Last updated: 2020-06-07

Checks: 2 0

Knit directory: bioinformatics_tips/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: a36c1e8

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version a36c1e8. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/

Unstaged changes:
    Modified:   analysis/_site.yml

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd a36c1e8 davetang 2020-06-07 Security basics
html b45e21b davetang 2020-05-23 Build site.
Rmd 3a4d719 davetang 2020-05-23 Workflow management system
html 17994b6 davetang 2020-05-16 Build site.
Rmd 5e7606d davetang 2020-05-16 Use APIs
html 04be0ae davetang 2020-05-09 Build site.
Rmd f8b797f davetang 2020-05-09 No TOC
html 60d127f davetang 2020-05-09 Build site.
html 169cfdf davetang 2020-05-09 Build site.
Rmd 83ae7f7 davetang 2020-05-09 Command line arguments
html 93e2a64 davetang 2020-05-09 Build site.
html 7225a50 davetang 2020-05-03 Build site.
Rmd 7d290c0 davetang 2020-05-03 Start workflowr project.