Last updated: 2024-07-15

Checks: 7 0

Knit directory: MATHPOP/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

The command set.seed(20240702) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 79bc13d. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.DS_Store
    Ignored:    analysis/figure/
    Ignored:    code/.DS_Store
    Ignored:    data/.DS_Store
    Ignored:    data/GC_prob/.DS_Store
    Ignored:    data/point_source_data/.DS_Store
    Ignored:    data/prob_GC_data/.DS_Store
    Ignored:    data/sim/.DS_Store
    Ignored:    data/v10acs/.DS_Store
    Ignored:    data/v10wfc3/.DS_Store
    Ignored:    data/v11acs/.DS_Store
    Ignored:    data/v11wfc3/.DS_Store
    Ignored:    data/v12acs/.DS_Store
    Ignored:    data/v12wfc3/.DS_Store
    Ignored:    data/v13acs/.DS_Store
    Ignored:    data/v13wfc3/.DS_Store
    Ignored:    data/v14acs/.DS_Store
    Ignored:    data/v14wfc3/.DS_Store
    Ignored:    data/v15acs/.DS_Store
    Ignored:    data/v15wfc3/.DS_Store
    Ignored:    data/v6acs/.DS_Store
    Ignored:    data/v6wfc3/.DS_Store
    Ignored:    data/v7acs/.DS_Store
    Ignored:    data/v8acs/.DS_Store
    Ignored:    data/v9acs/.DS_Store
    Ignored:    data/v9wfc3/.DS_Store
    Ignored:    source/.DS_Store
    Ignored:    source/v8wfc3/

Untracked files:
    Untracked:  analysis/CMD_plot_2-1.aux
    Untracked:  analysis/CMD_plot_2-1.log
    Untracked:  analysis/CMD_plot_2-1.pdf
    Untracked:  analysis/plot_ps-1.aux

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the repository in which changes were made to the R Markdown (analysis/about.Rmd) and HTML (docs/about.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html 9a18c24 david.li 2024-07-12 Build site.
Rmd 29bc7ed david.li 2024-07-12 wflow_git_commit(all = T)
html 29bc7ed david.li 2024-07-12 wflow_git_commit(all = T)
html 91e8077 david.li 2024-07-08 Build site.
Rmd 02c5eb3 david.li 2024-07-08 wflow_publish("analysis/about.Rmd")
html e750655 david.li 2024-07-08 Build site.
html 8fb288d david.li 2024-07-07 Build site.
html 3dee3e9 david.li 2024-07-06 Build site.
html dc09c08 david.li 2024-07-06 Build site.
html 64686bd david.li 2024-07-06 Build site.
Rmd 0b7fd29 david.li 2024-07-06 wflow_git_commit(all = T)
html 0b7fd29 david.li 2024-07-06 wflow_git_commit(all = T)
html 0a9d403 david.li 2024-07-05 Build site.
html c1fd386 david.li 2024-07-04 Build site.
html a513a79 david.li 2024-07-04 Build site.
html 6ff1ccc david.li 2024-07-04 Build site.
html 0b819e1 david.li 2024-07-03 Build site.
html 44c0586 david.li 2024-07-03 Build site.
html 345edbd david.li 2024-07-03 Build site.
html 957c2e2 david.li 2024-07-03 Build site.
Rmd 199856c david.li 2024-07-03 wflow_publish(c("analysis/index.Rmd", "analysis/vignette.Rmd",
html 3030b0c david.li 2024-07-03 Build site.
Rmd db0f025 david.li 2024-07-03 Initial Build
html db0f025 david.li 2024-07-03 Initial Build

Introduction

This page gives a brief introduction of the assumptions and construction of the MATHPOP methodology to infer globular cluster (GCs) counts in LSBGs/UDGs. For more details, see the original paper by Li et al. (2024).

MATHPOP uses a marked point process model to jointly model the spatial location \(\mathbf{X}\) (point process) of observed GCs and their magnitudes \(\mathbf{M}\) (mark). It is assumed that the GC distribution in galaxies, either bright, normal galaxies or UDGs, are described by a Sersic profile, while the GC magnitude distribution is described by a Gaussian distribution, which is the GCLF. Moreover, the background GC population, i.e., GCs in the intergalatic medium (IGM), are uniformly distributed (a homogeneous Poisson process). Note that we assume that the GCLF of each GC sub-population (normal galaxy, UDG, or IGM) have their own GCLF, and we infer them using the data.

Below is a graphical model that illustrates the MATHPOP model framework:

In the above figure, the data generating process under the MATHPOP framework assumes that we have GC sub-populations from the IGM, normal, bright galaxies (ETGs), and UDGs. The observed GCs (the data) are assumed to be independent superposition of the GCs from these three sub-populations. The Sersic profiles (\(\lambda, R_h, n\)) generate the GC spatial distributions in galaxies while a homogeneous process (\(\beta\)) generates GCs from the IGM. The GCLFs (\(\mu_{\text{TO}}, \sigma\)) of each GC sub-populations then generate the true magnitude distribution. The true magnitudes are then convolved with the measurement uncertainties (\(\sigma_M\)) to give rise to the noisy GC magnitudes. Lastly, the completeness fraction \(f(M)\) is applied to remove faint GCs that are unobservable, which give rise to the observed data (\(\mathbf{x}, \mathbf{M}\)).

The summarized assumptions of the current implementation of MATHPOP are the following:


sessionInfo()
R version 4.3.2 (2023-10-31)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Sonoma 14.1.1

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.11.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: America/Toronto
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] workflowr_1.7.1

loaded via a namespace (and not attached):
 [1] vctrs_0.6.5       httr_1.4.7        cli_3.6.3         knitr_1.48       
 [5] rlang_1.1.4       xfun_0.45         stringi_1.8.4     processx_3.8.4   
 [9] promises_1.3.0    jsonlite_1.8.8    glue_1.7.0        rprojroot_2.0.4  
[13] git2r_0.33.0      htmltools_0.5.8.1 httpuv_1.6.12     ps_1.7.7         
[17] sass_0.4.9        fansi_1.0.6       rmarkdown_2.27    jquerylib_0.1.4  
[21] tibble_3.2.1      evaluate_0.24.0   fastmap_1.2.0     yaml_2.3.9       
[25] lifecycle_1.0.4   whisker_0.4.1     stringr_1.5.1     compiler_4.3.2   
[29] fs_1.6.4          pkgconfig_2.0.3   Rcpp_1.0.12       rstudioapi_0.16.0
[33] later_1.3.2       digest_0.6.36     R6_2.5.1          utf8_1.2.4       
[37] pillar_1.9.0      callr_3.7.6       magrittr_2.0.3    bslib_0.7.0      
[41] tools_4.3.2       cachem_1.1.0      getPass_0.2-4