Last updated: 2025-07-09

Checks: 2 0

Knit directory: frascolla_chemoresistance/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 04f2e95

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 04f2e95. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/

Untracked files:
    Untracked:  _workflowr.yml
    Untracked:  analysis/
    Untracked:  data/
    Untracked:  frascolla_chemoresistance.Rproj
    Untracked:  output/
    Untracked:  src/

Unstaged changes:
    Modified:   .gitignore
    Modified:   README.md

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

There are no past versions. Publish this analysis with wflow_publish() to start tracking its development.

New label! The ‘new’ label denotes the most recently delivered report(s).

This website contains RNAseq data analyses for the chemoresistance project.

Bulk RNAseq data analysis

pooled shRNA vs scramble at day X

shRNA day X vs day 0

scramble day X vs day 0