Last updated: 2018-10-17

workflowr checks: (Click a bullet for more information)

• ✔ R Markdown file: up-to-date

  Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

• ✔ Repository version: 73690eb

  Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.
  
  Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

  
  Ignored files:
      Ignored:    .Rhistory
      Ignored:    .Rproj.user/
  
  Untracked files:
      Untracked:  X.RDS
      Untracked:  analysis/ldl_cad_cache/
      Untracked:  data/CAD_META.gz
      Untracked:  data/genome_wide_pruned_vars.1.RDS
      Untracked:  data/glg_ldl__vanderHarst_cad_cause.RDS
      Untracked:  data/glg_ldl__vanderHarst_cad_data.RDS
      Untracked:  data/glg_ldl__vanderHarst_cad_grid.RDS
      Untracked:  data/jointGwasMc_LDL.txt.gz
      Untracked:  data/ld_data.tar.gz
      Untracked:  data/ld_data/
      Untracked:  data/ldl_cad_cause.RDS
      Untracked:  data/ldl_cad_cause.old_grid.RDS
      Untracked:  data/ldl_cad_params.RDS
      Untracked:  data/snp_overlap.txt
      Untracked:  data/snp_overlap_ldpruned.txt
      Untracked:  data/top_ldl_pruned_vars.1.RDS
      Untracked:  ll_v7_notes.Rmd
      Untracked:  matrix_lik.RDS
      Untracked:  src/RcppExports.o
      Untracked:  src/log_likelihood_functions.o
      Untracked:  test_cause.R
      Untracked:  test_data/
      Untracked:  test_mixSQP.R
  
  Unstaged changes:
      Modified:   src/cause.so
  
  

  Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

Expand here to see past versions:

File	Version	Author	Date	Message
Rmd	19edfa4	Jean Morrison	2018-10-17	wflow_git_commit(“analysis/index.Rmd”)
html	f15238b	Jean Morrison	2018-10-14	Build site.
Rmd	d163752	Jean Morrison	2018-10-14	update about and index
Rmd	efc43ef	Jean Morrison	2018-10-14	Start workflowr project.

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Weclome to the CAUSE website!

This website is intended to contain supporting information for the CAUSE R package which you can find at github.com/jean997/cause. We are currently adding to it frequently so check back for more.

Find a walk-through of how to use CAUSE with genome-wide summary statistics here

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This reproducible R Markdown analysis was created with workflowr 1.1.1

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