Last updated: 2020-10-13
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Knit directory: BloomSail/
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| Rmd | 2c35703 | jens-daniel-mueller | 2020-10-13 | knit parameterization with kable |
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| Rmd | 2e0f902 | jens-daniel-mueller | 2020-09-29 | all parameters separate, rebuild |
library(tidyverse)
library(lubridate)Following parameterizations were chosen to run analysis and display results:
parameters <-
lst(
HC_flush_duration = 600,
HC_mixing_duration = 20,
pump_switch = ymd_hms("2018-07-17;13:08:34"),
duration_intervals = seq(150,500,50),
pCO2_resid_lim = 1,
example_ID = "180802",
example_station = "P03",
smoothing_duration = 30,
tau_factors = seq(0.8, 1.6, 0.2),
tau_factor_used = 1,
dep_grid = 1,
max_dep = 25,
max_dep_gap = 20,
max_gap = 3,
RT_stats_dep_max = 30,
RT_stats_pCO2_max = 300,
RT_stats_dep = 20,
surface_dep = 6,
i_dep_lim = 12,
i_dep_mix_lim = 17,
fixed_integration_depths = seq(9,13,1),
stations_out = c("PX1", "PX2", "P14", "P13", "P01"),
dates_out = c("180616","180820"),
phases_in = c("down", "up"),
fm_box_lon = c(18.9, 19.5, 19.5, 18.9),
fm_box_lat = c(57.4, 57.2, 57.45, 57.61),
map_lat_lo = 57.25,
map_lat_hi = 57.6,
map_lon_lo = 18.6,
map_lon_hi = 19.7,
herrvik_lat = 57.421658,
herrvik_lon = 18.914558,
ostergarn_lat = 57.430544,
ostergarn_lon = 18.984387,
stations_in_phytoplankton = c("P07", "P10"),
class_in_phytoplankton = "t",
getm_select_route = "E",
getm_low_lat = 57.3,
getm_high_lat = 57.5,
getm_start_date = "2018-06-20",
getm_end_date = "2018-08-25",
getm_i_dep = 19
)
parameters$HC_flush_duration
[1] 600
$HC_mixing_duration
[1] 20
$pump_switch
[1] "2018-07-17 13:08:34 UTC"
$duration_intervals
[1] 150 200 250 300 350 400 450 500
$pCO2_resid_lim
[1] 1
$example_ID
[1] "180802"
$example_station
[1] "P03"
$smoothing_duration
[1] 30
$tau_factors
[1] 0.8 1.0 1.2 1.4 1.6
$tau_factor_used
[1] 1
$dep_grid
[1] 1
$max_dep
[1] 25
$max_dep_gap
[1] 20
$max_gap
[1] 3
$RT_stats_dep_max
[1] 30
$RT_stats_pCO2_max
[1] 300
$RT_stats_dep
[1] 20
$surface_dep
[1] 6
$i_dep_lim
[1] 12
$i_dep_mix_lim
[1] 17
$fixed_integration_depths
[1] 9 10 11 12 13
$stations_out
[1] "PX1" "PX2" "P14" "P13" "P01"
$dates_out
[1] "180616" "180820"
$phases_in
[1] "down" "up"
$fm_box_lon
[1] 18.9 19.5 19.5 18.9
$fm_box_lat
[1] 57.40 57.20 57.45 57.61
$map_lat_lo
[1] 57.25
$map_lat_hi
[1] 57.6
$map_lon_lo
[1] 18.6
$map_lon_hi
[1] 19.7
$herrvik_lat
[1] 57.42166
$herrvik_lon
[1] 18.91456
$ostergarn_lat
[1] 57.43054
$ostergarn_lon
[1] 18.98439
$stations_in_phytoplankton
[1] "P07" "P10"
$class_in_phytoplankton
[1] "t"
$getm_select_route
[1] "E"
$getm_low_lat
[1] 57.3
$getm_high_lat
[1] 57.5
$getm_start_date
[1] "2018-06-20"
$getm_end_date
[1] "2018-08-25"
$getm_i_dep
[1] 19parameters %>%
write_rds(here::here("data",
"parameters.rds"))
sessionInfo()R version 4.0.2 (2020-06-22)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)
Matrix products: default
locale:
[1] LC_COLLATE=English_Germany.1252 LC_CTYPE=English_Germany.1252
[3] LC_MONETARY=English_Germany.1252 LC_NUMERIC=C
[5] LC_TIME=English_Germany.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] lubridate_1.7.9 forcats_0.5.0 stringr_1.4.0 dplyr_1.0.0
[5] purrr_0.3.4 readr_1.3.1 tidyr_1.1.0 tibble_3.0.3
[9] ggplot2_3.3.2 tidyverse_1.3.0 workflowr_1.6.2
loaded via a namespace (and not attached):
[1] tidyselect_1.1.0 xfun_0.16 haven_2.3.1 colorspace_1.4-1
[5] vctrs_0.3.2 generics_0.0.2 htmltools_0.5.0 yaml_2.2.1
[9] blob_1.2.1 rlang_0.4.7 later_1.1.0.1 pillar_1.4.6
[13] withr_2.2.0 glue_1.4.1 DBI_1.1.0 dbplyr_1.4.4
[17] modelr_0.1.8 readxl_1.3.1 lifecycle_0.2.0 munsell_0.5.0
[21] gtable_0.3.0 cellranger_1.1.0 rvest_0.3.6 evaluate_0.14
[25] knitr_1.30 httpuv_1.5.4 fansi_0.4.1 broom_0.7.0
[29] Rcpp_1.0.5 promises_1.1.1 backports_1.1.8 scales_1.1.1
[33] jsonlite_1.7.0 fs_1.4.2 hms_0.5.3 digest_0.6.25
[37] stringi_1.4.6 rprojroot_1.3-2 grid_4.0.2 here_0.1
[41] cli_2.0.2 tools_4.0.2 magrittr_1.5 crayon_1.3.4
[45] whisker_0.4 pkgconfig_2.0.3 ellipsis_0.3.1 xml2_1.3.2
[49] reprex_0.3.0 assertthat_0.2.1 rmarkdown_2.3 httr_1.4.2
[53] rstudioapi_0.11 R6_2.4.1 git2r_0.27.1 compiler_4.0.2