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library(tidyverse)
library(knitr)
library(kableExtra)Following parameterizations were chosen to run analysis and display results:
depth_levels = c(0, 150, 500, 2000)
depth_levels_33 <- c(
0,
10,
20,
30,
50,
75,
100,
125,
150,
200,
250,
300,
400,
500,
600,
700,
800,
900,
1000,
1100,
1200,
1300,
1400,
1500,
1750,
2000,
2500,
3000,
3500,
4000,
4500,
5000,
5500
)
slabs_Atl <-
c(
-Inf,
26.00,
26.50,
26.75,
27.00,
27.25,
27.50,
27.75,
27.85,
27.95,
28.05,
28.10,
28.15,
28.20,
Inf
)
slabs_Ind_Pac <-
c(-Inf,
26.00,
26.50,
26.75,
27.00,
27.25,
27.50,
27.75,
27.85,
27.95,
28.05,
28.10,
Inf)
longitude_sections_basin <- c(335.5, 190.5, 70.5)
longitude_sections_regular <- seq(30.5, 380.5, 20)
parameters <-
lst(
flag_f = c(2, 0),
flag_qc = 1,
depth_min = 150,
depth_shallow_max = 500,
bottomdepth_min = 500,
lat_max = 65,
lat_min = -85,
gamma_min = 26,
year_JGOFS_start = 1981,
year_JGOFS_end = 1999,
year_GOSHIP_end = 2012,
lon_Atl_section = 335.5,
lon_Pac_section = 190.5,
lon_Ind_section = 70.5,
lat_Atl_profile = 40.5,
lat_section_N = 59.5,
lat_section_S = -59.5,
longitude_sections_basin = longitude_sections_basin,
longitude_sections_regular = longitude_sections_regular,
inventory_depth = 3000,
coarse_grid_resolution = 10,
cruises_meridional = 1041,
predictors_max = 5,
predictors_min = 2,
MLR_number = 10,
depth_levels = depth_levels,
depth_levels_33 = depth_levels_33,
slabs_Atl = slabs_Atl,
slabs_Ind_Pac = slabs_Ind_Pac
)
rm(
slabs_Ind_Pac,
slabs_Atl,
depth_levels,
longitude_sections_regular,
longitude_sections_basin,
depth_levels_33
)
parameters$flag_f
[1] 2 0
$flag_qc
[1] 1
$depth_min
[1] 150
$depth_shallow_max
[1] 500
$bottomdepth_min
[1] 500
$lat_max
[1] 65
$lat_min
[1] -85
$gamma_min
[1] 26
$year_JGOFS_start
[1] 1981
$year_JGOFS_end
[1] 1999
$year_GOSHIP_end
[1] 2012
$lon_Atl_section
[1] 335.5
$lon_Pac_section
[1] 190.5
$lon_Ind_section
[1] 70.5
$lat_Atl_profile
[1] 40.5
$lat_section_N
[1] 59.5
$lat_section_S
[1] -59.5
$longitude_sections_basin
[1] 335.5 190.5 70.5
$longitude_sections_regular
[1] 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5
[13] 270.5 290.5 310.5 330.5 350.5 370.5
$inventory_depth
[1] 3000
$coarse_grid_resolution
[1] 10
$cruises_meridional
[1] 1041
$predictors_max
[1] 5
$predictors_min
[1] 2
$MLR_number
[1] 10
$depth_levels
[1] 0 150 500 2000
$depth_levels_33
[1] 0 10 20 30 50 75 100 125 150 200 250 300 400 500 600
[16] 700 800 900 1000 1100 1200 1300 1400 1500 1750 2000 2500 3000 3500 4000
[31] 4500 5000 5500
$slabs_Atl
[1] -Inf 26.00 26.50 26.75 27.00 27.25 27.50 27.75 27.85 27.95 28.05 28.10
[13] 28.15 28.20 Inf
$slabs_Ind_Pac
[1] -Inf 26.00 26.50 26.75 27.00 27.25 27.50 27.75 27.85 27.95 28.05 28.10
[13] Infparameters %>%
write_rds(here::here("data",
"parameters.rds"))
rm(list = ls())
sessionInfo()R version 4.0.2 (2020-06-22)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)
Matrix products: default
locale:
[1] LC_COLLATE=English_Germany.1252 LC_CTYPE=English_Germany.1252
[3] LC_MONETARY=English_Germany.1252 LC_NUMERIC=C
[5] LC_TIME=English_Germany.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] kableExtra_1.1.0 knitr_1.29 forcats_0.5.0 stringr_1.4.0
[5] dplyr_1.0.0 purrr_0.3.4 readr_1.3.1 tidyr_1.1.0
[9] tibble_3.0.3 ggplot2_3.3.2 tidyverse_1.3.0 workflowr_1.6.2
loaded via a namespace (and not attached):
[1] tidyselect_1.1.0 xfun_0.16 haven_2.3.1 colorspace_1.4-1
[5] vctrs_0.3.2 generics_0.0.2 viridisLite_0.3.0 htmltools_0.5.0
[9] yaml_2.2.1 blob_1.2.1 rlang_0.4.7 later_1.1.0.1
[13] pillar_1.4.6 withr_2.2.0 glue_1.4.1 DBI_1.1.0
[17] dbplyr_1.4.4 modelr_0.1.8 readxl_1.3.1 lifecycle_0.2.0
[21] munsell_0.5.0 gtable_0.3.0 cellranger_1.1.0 rvest_0.3.6
[25] evaluate_0.14 httpuv_1.5.4 fansi_0.4.1 broom_0.7.0
[29] Rcpp_1.0.5 promises_1.1.1 backports_1.1.8 scales_1.1.1
[33] webshot_0.5.2 jsonlite_1.7.0 fs_1.4.2 hms_0.5.3
[37] digest_0.6.25 stringi_1.4.6 rprojroot_1.3-2 grid_4.0.2
[41] here_0.1 cli_2.0.2 tools_4.0.2 magrittr_1.5
[45] crayon_1.3.4 whisker_0.4 pkgconfig_2.0.3 ellipsis_0.3.1
[49] xml2_1.3.2 reprex_0.3.0 lubridate_1.7.9 assertthat_0.2.1
[53] rmarkdown_2.3 httr_1.4.2 rstudioapi_0.11 R6_2.4.1
[57] git2r_0.27.1 compiler_4.0.2