Last updated: 2020-09-08
Checks: 7 0
Knit directory: Cant_eMLR/
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Ignored files:
Ignored: .Rproj.user/
Ignored: data/GLODAPv1_1/
Ignored: data/GLODAPv2_2016b_MappedClimatologies/
Ignored: data/GLODAPv2_2020/
Ignored: data/Gruber_2019/
Ignored: data/WOCE/
Ignored: data/World_Ocean_Atlas_2013_Clement/
Ignored: data/World_Ocean_Atlas_2018/
Ignored: data/eMLR/
Ignored: data/mapping/
Ignored: data/pCO2_atmosphere/
Ignored: dump/
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Unstaged changes:
Modified: analysis/_site.yml
Modified: code/Workflowr_project_managment.R
Modified: code/plotting_functions.R
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1981-07-14_n_2108_cruise_237_.png
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Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1989-05-08_n_96_cruise_275_.png
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Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1991-06-22_n_211_cruise_284_.png
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Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1994-08-31_n_86_cruise_429_.png
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Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1994-12-28_n_1422_cruise_249_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1995-01-10_n_58_cruise_441_.png
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Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1995-02-13_n_1804_cruise_250_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1995-03-12_n_211_cruise_362_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1995-03-29_n_1450_cruise_251_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1995-05-13_n_1431_cruise_252_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1995-06-26_n_1064_cruise_253_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1995-08-01_n_1569_cruise_254_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1995-09-02_n_341_cruise_431_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1995-09-21_n_1384_cruise_255_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1995-10-10_n_1383_cruise_339_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1995-11-18_n_684_cruise_256_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1995-12-26_n_1338_cruise_257_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1996-02-12_n_1867_cruise_280_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1996-03-07_n_1097_cruise_374_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1996-06-05_n_733_cruise_288_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1996-09-09_n_549_cruise_68_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1996-11-17_n_738_cruise_258_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1997-04-26_n_20_cruise_648_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1997-05-26_n_1028_cruise_160_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1997-05-27_n_307_cruise_42_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1997-06-14_n_1454_cruise_259_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1997-07-30_n_1096_cruise_260_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1997-08-25_n_770_cruise_261_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1997-11-22_n_209_cruise_464_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1998-02-11_n_635_cruise_341_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1998-03-14_n_196_cruise_69_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1998-06-07_n_44_cruise_448_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1998-06-28_n_38_cruise_449_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1998-10-09_n_33_cruise_409_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1998-11-24_n_250_cruise_465_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1999-05-17_n_90_cruise_467_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1999-05-31_n_324_cruise_461_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1999-09-05_n_87_cruise_468_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_1999-10-14_n_33_cruise_410_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2000-01-20_n_179_cruise_472_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2000-05-22_n_431_cruise_24_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2000-10-14_n_26_cruise_411_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2000-10-16_n_375_cruise_437_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2000-10-26_n_603_cruise_82_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2001-06-15_n_1120_cruise_83_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2001-06-23_n_361_cruise_476_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2001-08-14_n_814_cruise_477_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2001-09-04_n_31_cruise_478_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2001-09-12_n_390_cruise_438_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2001-11-17_n_898_cruise_70_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2002-04-01_n_46_cruise_682_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2002-05-29_n_26_cruise_706_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2002-06-27_n_146_cruise_263_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2003-03-14_n_647_cruise_484_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2003-08-10_n_1036_cruise_56_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2003-09-07_n_2595_cruise_486_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2003-10-06_n_1050_cruise_264_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2003-10-10_n_102_cruise_633_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2003-11-03_n_975_cruise_265_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2003-11-19_n_1218_cruise_487_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2004-01-02_n_1630_cruise_488_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2004-04-06_n_61_cruise_489_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2004-04-23_n_801_cruise_695_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2004-05-22_n_200_cruise_167_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2004-05-26_n_9_cruise_463_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2004-07-20_n_3224_cruise_272_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2004-08-18_n_876_cruise_490_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2004-10-22_n_81_cruise_492_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2004-11-27_n_926_cruise_493_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-01-10_n_682_cruise_72_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-01-25_n_2237_cruise_350_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-03-08_n_66_cruise_494_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-05-25_n_889_cruise_683_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-05-30_n_240_cruise_168_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-06-11_n_1490_cruise_495_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-09-14_n_1833_cruise_266_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-09-21_n_499_cruise_666_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-09-30_n_175_cruise_496_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2005-12-09_n_2541_cruise_497_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-03-09_n_1553_cruise_306_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-06-16_n_1_cruise_602_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2006-06-22_n_844_cruise_498_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-02-28_n_1668_cruise_352_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-03-09_n_1006_cruise_501_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-04-11_n_1914_cruise_353_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-05-31_n_600_cruise_327_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-08-14_n_1167_cruise_502_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-09-16_n_477_cruise_667_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-09-18_n_299_cruise_503_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-10-30_n_1748_cruise_504_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2007-12-07_n_1627_cruise_505_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-01-09_n_543_cruise_74_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-01-17_n_2443_cruise_345_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-02-20_n_1284_cruise_354_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-03-02_n_957_cruise_385_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-03-14_n_846_cruise_19_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-04-06_n_820_cruise_75_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-05-28_n_411_cruise_171_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2008-10-21_n_311_cruise_506_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-01-07_n_343_cruise_674_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-02-16_n_652_cruise_675_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-02-27_n_1162_cruise_84_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-03-29_n_1062_cruise_676_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-04-17_n_3549_cruise_355_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-05-18_n_2644_cruise_507_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-05-23_n_312_cruise_172_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-07-13_n_143_cruise_635_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-08-02_n_120_cruise_26_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-11-10_n_316_cruise_63_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2009-12-27_n_2668_cruise_273_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-01-25_n_928_cruise_699_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-03-30_n_2265_cruise_346_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-04-03_n_367_cruise_703_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-05-26_n_161_cruise_1085_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-06-26_n_157_cruise_1063_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-07-26_n_1203_cruise_609_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-08-19_n_80_cruise_1064_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-10-17_n_136_cruise_2028_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-11-15_n_83_cruise_2029_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2010-12-22_n_1296_cruise_20_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-01-17_n_107_cruise_1065_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-01-30_n_269_cruise_1087_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-02-18_n_116_cruise_1066_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-03-21_n_1930_cruise_295_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-05-18_n_510_cruise_174_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-06-25_n_249_cruise_1067_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-07-07_n_2107_cruise_517_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-10-09_n_617_cruise_347_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2011-10-26_n_204_cruise_2031_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-02-06_n_144_cruise_1090_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-02-06_n_586_cruise_1002_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-02-19_n_235_cruise_1069_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-04-04_n_1059_cruise_329_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-04-15_n_99_cruise_2033_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-05-01_n_1379_cruise_330_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-06-07_n_141_cruise_1029_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-06-26_n_386_cruise_1092_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-07-20_n_784_cruise_1071_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-08-15_n_1114_cruise_518_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-11-12_n_161_cruise_1073_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-12-05_n_200_cruise_2071_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-12-12_n_113_cruise_1074_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2012-12-15_n_775_cruise_1050_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-01-23_n_823_cruise_1051_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-01-29_n_350_cruise_1093_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-02-19_n_217_cruise_1076_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-03-14_n_208_cruise_2072_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-05-03_n_2792_cruise_1035_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-05-06_n_288_cruise_2073_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-06-09_n_213_cruise_1078_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-07-23_n_668_cruise_1079_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-08-21_n_830_cruise_1096_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-09-03_n_1824_cruise_1041_.png
Modified: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-10-11_n_140_cruise_2035_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-11-09_n_121_cruise_2036_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2013-12-06_n_135_cruise_2074_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-01-12_n_1650_cruise_1042_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-01-24_n_281_cruise_2075_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-02-22_n_251_cruise_2038_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-03-13_n_183_cruise_2076_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-04-18_n_2200_cruise_1036_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-04-29_n_75_cruise_2039_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-05-04_n_265_cruise_2077_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-05-18_n_257_cruise_2040_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-06-16_n_181_cruise_2078_.png
Deleted: output/figure/eMLR/data_preparation/all_cruises_clean/GLODAP_cruise_date_2014-07-08_n_358_cruise_1098_.png
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Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were made to the R Markdown (analysis/mapping_cstar_calculation.Rmd) and HTML (docs/mapping_cstar_calculation.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 04ee730 | jens-daniel-mueller | 2020-09-08 | rebuild after revision |
library(tidyverse)
library(metR)basinmask <-
read_csv(
here::here(
"data/World_Ocean_Atlas_2018/_summarized_files",
"basin_mask_WOA18.csv"
)
)
basinmask_AIP <-
read_csv(
here::here(
"data/World_Ocean_Atlas_2018/_summarized_files",
"basin_mask_WOA18_AIP.csv"
)
)
landmask <-
read_csv(
here::here(
"data/World_Ocean_Atlas_2018/_summarized_files",
"land_mask_WOA18.csv"
)
)Currently, we use combined predictor fields:
predictors <-
read_csv(here::here("data/mapping/predictor_fields",
"W18_st_G16_opsn.csv"))lm_all_wide_Cstar <-
read_csv(here::here("data/eMLR",
"lm_all_wide_Cstar.csv"))lm_all_wide_Cstar <- lm_all_wide_Cstar %>%
mutate(model = str_remove(model, "Cstar ~ "))
Cstar <- full_join(predictors, lm_all_wide_Cstar)
rm(predictors, lm_all_wide_Cstar)Cstar <- Cstar %>%
mutate(Cstar =
`coeff_(Intercept)` +
coeff_aou * aou +
coeff_oxygen * oxygen +
coeff_phosphate * phosphate +
coeff_phosphate_star * phosphate_star +
coeff_silicate * silicate +
coeff_sal * sal +
coeff_tem * tem)
Cstar <- Cstar %>%
select(lon, lat, depth, era, basin, Cstar, gamma)Cstar_average <- Cstar %>%
group_by(lon, lat, depth, era, basin) %>%
summarise(Cstar_mean = mean(Cstar, na.rm = TRUE),
Cstar_sd = sd(Cstar, na.rm = TRUE),
gamma_mean = mean(gamma, na.rm = TRUE)) %>%
ungroup()
rm(Cstar)
Cstar_average_Atl <- Cstar_average %>%
filter(basin == "Atlantic") %>%
mutate(gamma_slab = cut(gamma_mean, parameters$slabs_Atl))
Cstar_average_Ind_Pac <- Cstar_average %>%
filter(basin == "Indo-Pacific") %>%
mutate(gamma_slab = cut(gamma_mean, parameters$slabs_Ind_Pac))
Cstar_average <- bind_rows(Cstar_average_Atl, Cstar_average_Ind_Pac)
rm(Cstar_average_Atl, Cstar_average_Ind_Pac)For each basin and era combination, the zonal mean Cstar is calculated. Likewise, sd is calculated for the averaging of the mean basin fields.
Cstar_average <- full_join(Cstar_average,
basinmask_AIP %>% select(-basin))
Cstar_average_zonal <- Cstar_average %>%
group_by(lat, depth, era, basin, basin_AIP) %>%
summarise(across(
c(
"Cstar_mean",
"Cstar_sd",
"gamma_mean"
),
list(mean = ~ mean(.x, na.rm = TRUE),
sd = ~ sd(.x, na.rm = TRUE))
)) %>%
ungroup()
Cstar_average_zonal_Atl <- Cstar_average_zonal %>%
filter(basin == "Atlantic") %>%
mutate(gamma_slab = cut(gamma_mean_mean, parameters$slabs_Atl))
Cstar_average_zonal_Ind_Pac <- Cstar_average_zonal %>%
filter(basin == "Indo-Pacific") %>%
mutate(gamma_slab = cut(gamma_mean_mean, parameters$slabs_Ind_Pac))
Cstar_average_zonal <- bind_rows(Cstar_average_zonal_Atl, Cstar_average_zonal_Ind_Pac)
rm(Cstar_average_zonal_Atl, Cstar_average_zonal_Ind_Pac)Cstar_average %>%
write_csv(here::here("data/mapping/_summarized_files",
"Cstar_average.csv"))
Cstar_average_zonal %>%
write_csv(here::here("data/mapping/_summarized_files",
"Cstar_average_zonal.csv"))
sessionInfo()R version 4.0.2 (2020-06-22)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)
Matrix products: default
locale:
[1] LC_COLLATE=English_Germany.1252 LC_CTYPE=English_Germany.1252
[3] LC_MONETARY=English_Germany.1252 LC_NUMERIC=C
[5] LC_TIME=English_Germany.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] metR_0.7.0 forcats_0.5.0 stringr_1.4.0 dplyr_1.0.0
[5] purrr_0.3.4 readr_1.3.1 tidyr_1.1.0 tibble_3.0.3
[9] ggplot2_3.3.2 tidyverse_1.3.0 workflowr_1.6.2
loaded via a namespace (and not attached):
[1] tidyselect_1.1.0 xfun_0.16 haven_2.3.1 colorspace_1.4-1
[5] vctrs_0.3.2 generics_0.0.2 htmltools_0.5.0 yaml_2.2.1
[9] blob_1.2.1 rlang_0.4.7 later_1.1.0.1 pillar_1.4.6
[13] withr_2.2.0 glue_1.4.1 DBI_1.1.0 dbplyr_1.4.4
[17] modelr_0.1.8 readxl_1.3.1 lifecycle_0.2.0 munsell_0.5.0
[21] gtable_0.3.0 cellranger_1.1.0 rvest_0.3.6 evaluate_0.14
[25] knitr_1.29 httpuv_1.5.4 fansi_0.4.1 broom_0.7.0
[29] Rcpp_1.0.5 checkmate_2.0.0 promises_1.1.1 backports_1.1.8
[33] scales_1.1.1 jsonlite_1.7.0 fs_1.4.2 hms_0.5.3
[37] digest_0.6.25 stringi_1.4.6 rprojroot_1.3-2 grid_4.0.2
[41] here_0.1 cli_2.0.2 tools_4.0.2 magrittr_1.5
[45] crayon_1.3.4 whisker_0.4 pkgconfig_2.0.3 ellipsis_0.3.1
[49] data.table_1.13.0 xml2_1.3.2 reprex_0.3.0 lubridate_1.7.9
[53] assertthat_0.2.1 rmarkdown_2.3 httr_1.4.2 rstudioapi_0.11
[57] R6_2.4.1 git2r_0.27.1 compiler_4.0.2