Extreme pH Profiles

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Last updated: 2023-11-24

Checks: 7 0

Knit directory: bgc_argo_r_argodata/

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---

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---

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/extreme_compound.Rmd) and HTML (docs/extreme_compound.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	3dc557d	ds2n19	2023-11-24	Switched to new profile details.
Rmd	59f5cc4	ds2n19	2023-11-23	Moved spatiotemporal analysis to use aligned profiles.
html	80c16c2	ds2n19	2023-11-15	Build site.
html	4b55c43	ds2n19	2023-10-12	Build site.
Rmd	ce19a66	ds2n19	2023-10-04	Revised version of OceanSODA product -v2023
html	7b3d8c5	pasqualina-vonlanthendinenna	2022-08-29	Build site.
html	bdd516d	pasqualina-vonlanthendinenna	2022-05-23	Build site.
html	4173c20	jens-daniel-mueller	2022-05-12	Build site.
html	dfe89d7	jens-daniel-mueller	2022-05-12	Build site.
html	710edd4	jens-daniel-mueller	2022-05-11	Build site.
Rmd	2f20a76	jens-daniel-mueller	2022-05-11	rebuild all after subsetting AB profiles and code cleaning

---

Task

Explore double extremes in the temp and pH anomaly fields

Load Data

library(tidyverse)
library(lubridate)
library(ggnewscale)

theme_set(theme_bw())

HNL_colors_map <- c('H' = 'red3',
                    'N' = 'gray90',
                    'L' = 'blue3')

# opt_min_profile_range
# profiles with profile_range >= opt_min_profile_range will be selected 
# 1 = profiles of at least pH = 614m temp = 600m, 2 = profiles of at least pH = 1225m temp = 1200m, 3 = profiles of at least pH = 1600m temp = 1500m
opt_min_profile_range = 3

path_argo <- '/nfs/kryo/work/updata/bgc_argo_r_argodata'
path_argo_preprocessed <- paste0(path_argo, "/preprocessed_bgc_data")
path_emlr_utilities <- "/nfs/kryo/work/jenmueller/emlr_cant/utilities/files/"

path_argo <- '/nfs/kryo/work/datasets/ungridded/3d/ocean/floats/bgc_argo'
# /nfs/kryo/work/datasets/ungridded/3d/ocean/floats/bgc_argo/preprocessed_bgc_data
path_argo_preprocessed <- paste0(path_argo, "/preprocessed_bgc_data")

map <-
  read_rds(paste(path_emlr_utilities,
                 "map_landmask_WOA18.rds",
                 sep = ""))

pH_extreme <- read_rds(file = paste0(path_argo_preprocessed, "/OceanSODA_pH_anomaly_field.rds"))

temp_extreme <- read_rds(file = paste0(path_argo_preprocessed, "/OceanSODA_SST_anomaly_field.rds"))

# load validated and vertically aligned pH profiles, 
argo_pH <- read_rds(file = paste0(path_argo_preprocessed, "/pH_bgc_va.rds")) %>%
  filter(profile_range >= opt_min_profile_range) %>%
  select(file_id,
         date,
         year,
         month,
         lat,
         lon,
         depth,
         profile_range_pH = profile_range,
         pH,
         h_plus)

argo_temp <- read_rds(file = paste0(path_argo_preprocessed, "/temp_bgc_va.rds")) %>%
  filter(profile_range >= opt_min_profile_range) %>%
  select(file_id,
         date,
         year,
         month,
         lat,
         lon,
         depth,
         profile_range_temp = profile_range,
         temp)

full_argo <- full_join(argo_pH, argo_temp)

# list where both pH and temp exist and apply to full_argo
argo_file_id <- inner_join(argo_pH %>% distinct(file_id), argo_temp %>% distinct(file_id))
full_argo <- left_join(argo_file_id, full_argo)

# change the date format for compatibility with OceanSODA pH data
full_argo <- full_argo %>%
  mutate(date = ymd(format(date, "%Y-%m-15")))

rm(argo_pH, argo_temp, argo_file_id)

Anomaly maps

pH

pH_extreme %>%
  filter(year >= 2013) %>% 
  group_split(month) %>%
  #head(1) %>%
  map(
    ~map +
      geom_tile(data = .x,
                aes(x = lon_raw,
                    y = lat_raw,
                    fill = ph_extreme))+
      scale_fill_manual(values = HNL_colors_map)+
      facet_wrap(~year, ncol = 2)+
      lims(y = c(-85, -32))+
      labs(title = paste('month:', unique(.x$month)),
           fill = 'pH')
  )

[[1]]

Past versions of pH_anomaly_map-1.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[2]]

Past versions of pH_anomaly_map-2.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[3]]

Past versions of pH_anomaly_map-3.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[4]]

Past versions of pH_anomaly_map-4.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[5]]

Past versions of pH_anomaly_map-5.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[6]]

Past versions of pH_anomaly_map-6.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[7]]

Past versions of pH_anomaly_map-7.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[8]]

Past versions of pH_anomaly_map-8.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[9]]

Past versions of pH_anomaly_map-9.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[10]]

Past versions of pH_anomaly_map-10.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[11]]

Past versions of pH_anomaly_map-11.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[12]]

Past versions of pH_anomaly_map-12.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

SST

temp_extreme %>%
  filter(year >= 2013) %>% 
  group_split(month) %>%
  #head(1) %>%
  map(
    ~map +
      geom_tile(data = .x,
                aes(x = lon_raw,
                    y = lat_raw,
                    fill = temp_extreme))+
      scale_fill_manual(values = HNL_colors_map)+
      facet_wrap(~year, ncol = 2)+
      lims(y = c(-85, -32))+
      labs(title = paste('month:', unique(.x$month)),
           fill = 'pH')
  )

[[1]]

Past versions of SST_anomaly_map-1.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[2]]

Past versions of SST_anomaly_map-2.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[3]]

Past versions of SST_anomaly_map-3.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[4]]

Past versions of SST_anomaly_map-4.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[5]]

Past versions of SST_anomaly_map-5.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[6]]

Past versions of SST_anomaly_map-6.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[7]]

Past versions of SST_anomaly_map-7.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[8]]

Past versions of SST_anomaly_map-8.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[9]]

Past versions of SST_anomaly_map-9.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[10]]

Past versions of SST_anomaly_map-10.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[11]]

Past versions of SST_anomaly_map-11.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[12]]

Past versions of SST_anomaly_map-12.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

Join data

anomaly_field <- full_join(pH_extreme %>% 
                             select(lon_raw, lat_raw, month, year, date, basin_AIP, biome_name, ph_extreme),
                           temp_extreme %>% 
                             select(lon_raw, lat_raw, month, year, date, basin_AIP, biome_name, temp_extreme))

# chisq.test(anomaly_field$ph_extreme, anomaly_field$temp_extreme, correct = FALSE)

anomaly_field <- anomaly_field %>%
  mutate(
    double_extreme = case_when(
      temp_extreme == 'H' & ph_extreme == 'H' ~ 'warm_HpH',
      temp_extreme == 'L' &
        ph_extreme == 'H' ~ 'cold_HpH',
      temp_extreme == 'H' &
        ph_extreme == 'L' ~ 'warm_LpH',
      temp_extreme == 'L' &
        ph_extreme == 'L' ~ 'cold_LpH',
      temp_extreme == 'H' &
        ph_extreme == 'N' ~ 'warm',
      temp_extreme == 'L' &
        ph_extreme == 'N' ~ 'cold',
      temp_extreme == 'N' &
        ph_extreme == 'H' ~ 'HpH',
      temp_extreme == 'N' &
        ph_extreme == 'L' ~ 'LpH',
      TRUE ~ 'N'
    )
  ) %>%
  mutate(
    double_extreme = fct_relevel(
      double_extreme,
      'warm_HpH',
      'cold_HpH',
      'warm_LpH',
      'cold_LpH',
      'warm',
      'cold',
      'HpH',
      'LpH',
      'N'
    )
  )

Compound extreme maps

HNL_colors_map_temp <- c('H' = "#CD534CFF",
                    'N' = 'transparent',
                    'L' = "#0073C2FF")

HNL_colors_map_ph <- c('H' = "#009E73",
                    'N' = 'transparent',
                    'L' = "#EFC000FF")


anomaly_field %>%
  filter(year >= 2013,
         double_extreme != "N") %>%
  group_split(month) %>%
  # tail(1) %>%
  map(
    ~ map +
      geom_tile(data = .x,
                aes(
                  x = lon_raw,
                  y = lat_raw,
                  fill = ph_extreme
                ), alpha = 0.4) +
      scale_fill_manual(values = HNL_colors_map_ph) +
      new_scale_fill() +
      geom_tile(data = .x,
                aes(
                  x = lon_raw,
                  y = lat_raw,
                  fill = temp_extreme
                ), alpha = 0.4) +
      scale_fill_manual(values = HNL_colors_map_temp) +
      facet_wrap(~ year, ncol = 2) +
      lims(y = c(-85, -32)) +
      labs(title = paste0('month:', unique(.x$month)))
  )

[[1]]

Past versions of compound_extreme_maps_transparent_color_newscale-1.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[2]]

Past versions of compound_extreme_maps_transparent_color_newscale-2.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[3]]

Past versions of compound_extreme_maps_transparent_color_newscale-3.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[4]]

Past versions of compound_extreme_maps_transparent_color_newscale-4.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[5]]

Past versions of compound_extreme_maps_transparent_color_newscale-5.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

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Past versions of compound_extreme_maps_transparent_color_newscale-6.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

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Past versions of compound_extreme_maps_transparent_color_newscale-7.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

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Past versions of compound_extreme_maps_transparent_color_newscale-8.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

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Past versions of compound_extreme_maps_transparent_color_newscale-9.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

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Past versions of compound_extreme_maps_transparent_color_newscale-10.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[11]]

Past versions of compound_extreme_maps_transparent_color_newscale-11.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[12]]

Past versions of compound_extreme_maps_transparent_color_newscale-12.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

rm(HNL_colors_map_temp, HNL_colors_map_ph)

anomaly_field %>% 
  filter(year >= 2013) %>% 
  group_split(month) %>% 
  map(
    ~map+
      geom_tile(data = .x,
                aes(x = lon_raw,
                    y = lat_raw,
                    fill = double_extreme))+
      facet_wrap(~year, ncol = 2)+
      scale_fill_manual(values = c('warm_HpH' = 'brown',
                                   'warm_LpH' = 'yellow',
                                   'cold_HpH' = 'beige',
                                   'cold_LpH' = 'cyan',
                                   'cold' = 'blue',
                                   'warm' = 'red',
                                   'LpH' = 'orange',
                                   'HpH' = 'green',
                                   'N' = NA),
                        na.value = NA)+
      lims(y = c(-85, -32))+
      labs(title = paste0('month:', unique(.x$month)),
           fill = 'double extreme')
  )

[[1]]

Past versions of compound_extreme_maps-1.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[2]]

Past versions of compound_extreme_maps-2.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[3]]

Past versions of compound_extreme_maps-3.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[4]]

Past versions of compound_extreme_maps-4.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[5]]

Past versions of compound_extreme_maps-5.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

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Past versions of compound_extreme_maps-6.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

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Past versions of compound_extreme_maps-7.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

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Past versions of compound_extreme_maps-8.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

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Past versions of compound_extreme_maps-9.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

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Past versions of compound_extreme_maps-10.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

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Past versions of compound_extreme_maps-11.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[12]]

Past versions of compound_extreme_maps-12.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

Join Argo profile data

anomaly_field <- anomaly_field %>% 
  rename(lat = lat_raw,
         lon = lon_raw) %>% 
  filter(year >= 2013)
  
profile_double_extreme <- inner_join(full_argo, anomaly_field)

# profile_double_extreme <- profile_double_extreme %>% 
#   unite('platform_cycle', platform_number:cycle_number, sep = '_', remove = FALSE)

anomaly_field %>% 
  filter(year >= 2013) %>% 
  group_split(month) %>% 
  map(
    ~map+
      geom_tile(data = .x,
                aes(x = lon,
                    y = lat,
                    fill = double_extreme))+
      facet_wrap(~year, ncol = 2)+
      scale_fill_manual(values = c('warm_HpH' = 'brown',
                                   'warm_LpH' = 'yellow',
                                   'cold_HpH' = 'beige',
                                   'cold_LpH' = 'cyan',
                                   'cold' = 'blue',
                                   'warm' = 'red',
                                   'LpH' = 'orange',
                                   'HpH' = 'green',
                                   'N' = NA),
                        na.value = NA)+
      geom_point(data = profile_double_extreme, 
                 aes(x = lon,
                     y = lat),
                 size = 0.2)+
      lims(y = c(-85, -32))+
      labs(title = paste0('month:', unique(.x$month)),
           fill = 'double extreme')
  )

[[1]]

Past versions of anomaly_field_maps_with_argo_locations-1.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[2]]

Past versions of anomaly_field_maps_with_argo_locations-2.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[3]]

Past versions of anomaly_field_maps_with_argo_locations-3.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[4]]

Past versions of anomaly_field_maps_with_argo_locations-4.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[5]]

Past versions of anomaly_field_maps_with_argo_locations-5.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[6]]

Past versions of anomaly_field_maps_with_argo_locations-6.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[7]]

Past versions of anomaly_field_maps_with_argo_locations-7.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[8]]

Past versions of anomaly_field_maps_with_argo_locations-8.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[9]]

Past versions of anomaly_field_maps_with_argo_locations-9.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[10]]

Past versions of anomaly_field_maps_with_argo_locations-10.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[11]]

Past versions of anomaly_field_maps_with_argo_locations-11.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[12]]

Past versions of anomaly_field_maps_with_argo_locations-12.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

Plot Profiles

Raw

pH

profile_double_extreme %>% 
  group_split(biome_name, basin_AIP, year) %>% 
  map(
    ~ggplot(data = .x,
            aes(x = pH,
                y = depth,
                group = file_id,
                col = double_extreme))+
      geom_path(data = .x %>% filter(double_extreme == 'N'),
                aes(x = pH,
                    y = depth, 
                    group = file_id,
                    col = double_extreme),
                size = 0.3)+
      geom_path(data = .x %>% filter(double_extreme == 'E'),
                aes(x = pH,
                    y = depth, 
                    group = file_id,
                    col = double_extreme),
                size = 0.5)+
      scale_y_reverse()+
      scale_color_manual(values = c('N' = 'gray', 'E' = 'red'))+
      facet_wrap(~month, ncol = 6)+
      labs(title = paste0('biome: ', unique(.x$biome_name), '| ', unique(.x$basin_AIP), '| ', unique(.x$year)),
           col = 'double extreme',
           x = 'Argo pH',
           y = 'depth')
  )

[[1]]

Past versions of plot_raw_pH_profiles-1.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[2]]

Past versions of plot_raw_pH_profiles-2.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[3]]

Past versions of plot_raw_pH_profiles-3.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[4]]

Past versions of plot_raw_pH_profiles-4.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[5]]

Past versions of plot_raw_pH_profiles-5.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[6]]

Past versions of plot_raw_pH_profiles-6.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[7]]

Past versions of plot_raw_pH_profiles-7.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[8]]

Past versions of plot_raw_pH_profiles-8.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[9]]

Past versions of plot_raw_pH_profiles-9.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[10]]

Past versions of plot_raw_pH_profiles-10.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[11]]

Past versions of plot_raw_pH_profiles-11.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[12]]

Past versions of plot_raw_pH_profiles-12.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[13]]

Past versions of plot_raw_pH_profiles-13.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[14]]

Past versions of plot_raw_pH_profiles-14.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[15]]

Past versions of plot_raw_pH_profiles-15.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[16]]

Past versions of plot_raw_pH_profiles-16.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[17]]

Past versions of plot_raw_pH_profiles-17.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[18]]

Past versions of plot_raw_pH_profiles-18.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[19]]

Past versions of plot_raw_pH_profiles-19.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[20]]

Past versions of plot_raw_pH_profiles-20.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[21]]

Past versions of plot_raw_pH_profiles-21.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[22]]

Past versions of plot_raw_pH_profiles-22.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[23]]

Past versions of plot_raw_pH_profiles-23.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[24]]

Past versions of plot_raw_pH_profiles-24.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[25]]

Past versions of plot_raw_pH_profiles-25.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[26]]

Past versions of plot_raw_pH_profiles-26.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[27]]

Past versions of plot_raw_pH_profiles-27.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[28]]

Past versions of plot_raw_pH_profiles-28.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[29]]

Past versions of plot_raw_pH_profiles-29.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[30]]

Past versions of plot_raw_pH_profiles-30.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[31]]

Past versions of plot_raw_pH_profiles-31.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[32]]

Past versions of plot_raw_pH_profiles-32.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[33]]

Past versions of plot_raw_pH_profiles-33.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[34]]

Past versions of plot_raw_pH_profiles-34.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[35]]

Past versions of plot_raw_pH_profiles-35.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[36]]

Past versions of plot_raw_pH_profiles-36.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[37]]

Past versions of plot_raw_pH_profiles-37.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[38]]

Past versions of plot_raw_pH_profiles-38.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[39]]

Past versions of plot_raw_pH_profiles-39.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[40]]

Past versions of plot_raw_pH_profiles-40.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[41]]

Past versions of plot_raw_pH_profiles-41.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[42]]

Past versions of plot_raw_pH_profiles-42.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[43]]

Past versions of plot_raw_pH_profiles-43.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[44]]

Past versions of plot_raw_pH_profiles-44.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[45]]

Past versions of plot_raw_pH_profiles-45.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[46]]

Past versions of plot_raw_pH_profiles-46.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[47]]

Past versions of plot_raw_pH_profiles-47.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[48]]

Past versions of plot_raw_pH_profiles-48.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[49]]

Past versions of plot_raw_pH_profiles-49.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[50]]

Past versions of plot_raw_pH_profiles-50.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[51]]

Past versions of plot_raw_pH_profiles-51.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[52]]

Past versions of plot_raw_pH_profiles-52.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[53]]

Past versions of plot_raw_pH_profiles-53.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[54]]

Past versions of plot_raw_pH_profiles-54.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[55]]

Past versions of plot_raw_pH_profiles-55.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[56]]

Past versions of plot_raw_pH_profiles-56.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[57]]

Past versions of plot_raw_pH_profiles-57.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[58]]

Past versions of plot_raw_pH_profiles-58.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[59]]

Past versions of plot_raw_pH_profiles-59.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[60]]

Past versions of plot_raw_pH_profiles-60.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12

[[61]]

Past versions of plot_raw_pH_profiles-61.png

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80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12

[[62]]

Past versions of plot_raw_pH_profiles-62.png

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80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12

[[63]]

Past versions of plot_raw_pH_profiles-63.png

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80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12

[[64]]

Past versions of plot_raw_pH_profiles-64.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12

[[65]]

Past versions of plot_raw_pH_profiles-65.png

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80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12

[[66]]

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80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12

[[67]]

Past versions of plot_raw_pH_profiles-67.png

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80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12

[[68]]

Past versions of plot_raw_pH_profiles-68.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12

Temperature

profile_double_extreme %>% 
  group_split(biome_name, basin_AIP, year) %>% 
  map(
    ~ggplot(data = .x,
            aes(x = temp,
                y = depth,
                group = file_id,
                col = double_extreme))+
      geom_path(data = .x %>% filter(double_extreme == 'N'),
                aes(x = temp,
                    y = depth, 
                    group = file_id,
                    col = double_extreme),
                size = 0.3)+
      geom_path(data = .x %>% filter(double_extreme == 'E'),
                aes(x = temp,
                    y = depth, 
                    group = file_id,
                    col = double_extreme),
                size = 0.5)+
      scale_y_reverse()+
      scale_color_manual(values = c('N' = 'gray', 'E' = 'red'))+
      facet_wrap(~month, ncol = 6)+
      labs(title = paste0('biome: ', unique(.x$biome_name), '| ', unique(.x$basin_AIP), '| ', unique(.x$year)),
           col = 'double extreme',
           x = 'Argo temperature',
           y = 'depth')
  )

[[1]]

Past versions of plot_raw_temperature_profiles_double_extreme-1.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[2]]

Past versions of plot_raw_temperature_profiles_double_extreme-2.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[3]]

Past versions of plot_raw_temperature_profiles_double_extreme-3.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

[[4]]

Past versions of plot_raw_temperature_profiles_double_extreme-4.png

Version	Author	Date
80c16c2	ds2n19	2023-11-15
4b55c43	ds2n19	2023-10-12
710edd4	jens-daniel-mueller	2022-05-11

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Pacific basin, STSS biome, December 2017

Pacific_STSS_2017 <- profile_double_extreme %>% 
  filter(date == '2017-12-15',
         basin_AIP == 'Pacific',
         biome_name == 'STSS')

# pH: 
Pacific_STSS_2017 %>% 
  ggplot()+
  geom_path(data = Pacific_STSS_2017 %>% filter(double_extreme == 'N'),
            aes(x = pH,
                y = depth,
                group = file_id, 
                col = double_extreme),
            size = 0.3)+
  geom_path(data = Pacific_STSS_2017 %>% filter(double_extreme == 'E'),
            aes(x = pH,
                y = depth,
                group = file_id, 
                col = double_extreme),
            size = 0.5)+
  scale_y_reverse()+
  scale_color_manual(values = c('E' = 'red', 'N' = 'grey'))+
  labs(title = 'Pacific, STSS biome, December 2017',
       col = 'double extreme',
       x = 'Argo pH',
       y = 'depth')

Past versions of pacific_STSS_dec_2017-1.png

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80c16c2	ds2n19	2023-11-15
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710edd4	jens-daniel-mueller	2022-05-11

# Temperature 

Pacific_STSS_2017 %>% 
  ggplot()+
  geom_path(data = Pacific_STSS_2017 %>% filter(double_extreme == 'N'),
            aes(x = temp,
                y = depth,
                group = file_id, 
                col = double_extreme),
            size = 0.3)+
  geom_path(data = Pacific_STSS_2017 %>% filter(double_extreme == 'E'),
            aes(x = temp,
                y = depth,
                group = file_id, 
                col = double_extreme),
            size = 0.5)+
  scale_y_reverse()+
  scale_color_manual(values = c('E' = 'red', 'N' = 'grey'))+
  labs(title = 'Pacific, STSS biome, December 2017',
       col = 'double extreme',
       x = 'Argo pH',
       y = 'depth')

Past versions of pacific_STSS_dec_2017-2.png

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80c16c2	ds2n19	2023-11-15
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710edd4	jens-daniel-mueller	2022-05-11

rm(Pacific_STSS_2017)

Pacific basin, STSS biome, December 2019

No profiles for December 2019 in SPSS or STSS Pacific

Session information

sessionInfo()

R version 4.2.2 (2022-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.5

Matrix products: default
BLAS:   /usr/local/R-4.2.2/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.2.2/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] ggnewscale_0.4.8 lubridate_1.9.0  timechange_0.1.1 forcats_0.5.2   
 [5] stringr_1.5.0    dplyr_1.1.3      purrr_1.0.2      readr_2.1.3     
 [9] tidyr_1.3.0      tibble_3.2.1     ggplot2_3.4.4    tidyverse_1.3.2 

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.10         assertthat_0.2.1    rprojroot_2.0.3    
 [4] digest_0.6.30       utf8_1.2.2          R6_2.5.1           
 [7] cellranger_1.1.0    backports_1.4.1     reprex_2.0.2       
[10] evaluate_0.18       highr_0.9           httr_1.4.4         
[13] pillar_1.9.0        rlang_1.1.1         googlesheets4_1.0.1
[16] readxl_1.4.1        rstudioapi_0.15.0   whisker_0.4        
[19] jquerylib_0.1.4     rmarkdown_2.18      labeling_0.4.2     
[22] googledrive_2.0.0   munsell_0.5.0       broom_1.0.5        
[25] compiler_4.2.2      httpuv_1.6.6        modelr_0.1.10      
[28] xfun_0.35           pkgconfig_2.0.3     htmltools_0.5.3    
[31] tidyselect_1.2.0    workflowr_1.7.0     fansi_1.0.3        
[34] crayon_1.5.2        withr_2.5.0         tzdb_0.3.0         
[37] dbplyr_2.2.1        later_1.3.0         grid_4.2.2         
[40] jsonlite_1.8.3      gtable_0.3.1        lifecycle_1.0.3    
[43] DBI_1.1.3           git2r_0.30.1        magrittr_2.0.3     
[46] scales_1.2.1        cli_3.6.1           stringi_1.7.8      
[49] cachem_1.0.6        farver_2.1.1        fs_1.5.2           
[52] promises_1.2.0.1    xml2_1.3.3          bslib_0.4.1        
[55] ellipsis_0.3.2      generics_0.1.3      vctrs_0.6.4        
[58] tools_4.2.2         glue_1.6.2          hms_1.1.2          
[61] fastmap_1.1.0       yaml_2.3.6          colorspace_2.0-3   
[64] gargle_1.2.1        rvest_1.0.3         knitr_1.41         
[67] haven_2.5.1         sass_0.4.4