Biomes

# keep only southern ocean biomes 

region_masks_all_1x1 <- region_masks_all_1x1 %>%
  filter(region == 'southern',
         biome != 0) %>% 
  select(-region)

# remove coastal data 

region_masks_all_1x1 <- region_masks_all_1x1 %>% 
  filter(coast == "0")

map +
  geom_tile(data = region_masks_all_1x1, 
            aes(x = lon, 
                y = lat, 
                fill = biome))+
  lims(y = c(-85, -30))+
  scale_fill_brewer(palette = 'Dark2')

Past versions of map_of_biomes-1.png

Basins

basinmask <- basinmask %>%
  filter(lat < -30)

map +
  geom_tile(data = basinmask, 
            aes(x = lon, 
                y = lat, 
                fill = basin_AIP))+
  lims(y = c(-85, -30))+
  scale_fill_brewer(palette = 'Dark2')

Past versions of map_of_basins-1.png

Profiles by longitude

# plot the argo temperature profiles according to their longitude, in each biome, basin, and year

full_argo_SO %>% 
  group_split(biome, basin_AIP, year) %>% 
  # head(6) %>% 
  map(
    ~ ggplot(data = .x,
             aes(x = temp_adjusted,
                 y = depth,
                 group = platform_cycle,
                 col = lon))+
      geom_path(data = .x,
                aes(x = temp_adjusted,
                    y = depth,
                    group = platform_cycle,
                    col = lon), 
                size = 0.3)+
      scale_y_reverse()+
      scale_color_viridis_c()+
      facet_wrap(~month, ncol = 6)+
      labs(title = paste0('biome: ', unique(.x$biome), '| basin: ', unique(.x$basin_AIP), ' |', unique(.x$year)),
           x = 'Argo temperature (ºC)',
           y = 'depth (m)',
           col = 'longitude')
  )

[[1]]

Past versions of plot_raw_profiles_by_longitude-1.png

[[2]]

Past versions of plot_raw_profiles_by_longitude-2.png

[[3]]

Past versions of plot_raw_profiles_by_longitude-3.png

[[4]]

Past versions of plot_raw_profiles_by_longitude-4.png

[[5]]

Past versions of plot_raw_profiles_by_longitude-5.png

[[6]]

Past versions of plot_raw_profiles_by_longitude-6.png

[[7]]

Past versions of plot_raw_profiles_by_longitude-7.png

[[8]]

Past versions of plot_raw_profiles_by_longitude-8.png

[[9]]

Past versions of plot_raw_profiles_by_longitude-9.png

[[10]]

Past versions of plot_raw_profiles_by_longitude-10.png

[[11]]

Past versions of plot_raw_profiles_by_longitude-11.png

[[12]]

Past versions of plot_raw_profiles_by_longitude-12.png

[[13]]

Past versions of plot_raw_profiles_by_longitude-13.png

[[14]]

Past versions of plot_raw_profiles_by_longitude-14.png

[[15]]

Past versions of plot_raw_profiles_by_longitude-15.png

[[16]]

Past versions of plot_raw_profiles_by_longitude-16.png

[[17]]

Past versions of plot_raw_profiles_by_longitude-17.png

[[18]]

Past versions of plot_raw_profiles_by_longitude-18.png

[[19]]

Past versions of plot_raw_profiles_by_longitude-19.png

[[20]]

Past versions of plot_raw_profiles_by_longitude-20.png

[[21]]

Past versions of plot_raw_profiles_by_longitude-21.png

[[22]]

Past versions of plot_raw_profiles_by_longitude-22.png

[[23]]

Past versions of plot_raw_profiles_by_longitude-23.png

[[24]]

Past versions of plot_raw_profiles_by_longitude-24.png

[[25]]

Past versions of plot_raw_profiles_by_longitude-25.png

[[26]]

Past versions of plot_raw_profiles_by_longitude-26.png

[[27]]

Past versions of plot_raw_profiles_by_longitude-27.png

[[28]]

Past versions of plot_raw_profiles_by_longitude-28.png

[[29]]

Past versions of plot_raw_profiles_by_longitude-29.png

[[30]]

Past versions of plot_raw_profiles_by_longitude-30.png

[[31]]

Past versions of plot_raw_profiles_by_longitude-31.png

[[32]]

Past versions of plot_raw_profiles_by_longitude-32.png

[[33]]

Past versions of plot_raw_profiles_by_longitude-33.png

[[34]]

Past versions of plot_raw_profiles_by_longitude-34.png

[[35]]

Past versions of plot_raw_profiles_by_longitude-35.png

[[36]]

Past versions of plot_raw_profiles_by_longitude-36.png

[[37]]

Past versions of plot_raw_profiles_by_longitude-37.png

[[38]]

Past versions of plot_raw_profiles_by_longitude-38.png

[[39]]

Past versions of plot_raw_profiles_by_longitude-39.png

[[40]]

Past versions of plot_raw_profiles_by_longitude-40.png

[[41]]

Past versions of plot_raw_profiles_by_longitude-41.png

[[42]]

Past versions of plot_raw_profiles_by_longitude-42.png

[[43]]

Past versions of plot_raw_profiles_by_longitude-43.png

[[44]]

Past versions of plot_raw_profiles_by_longitude-44.png

[[45]]

Past versions of plot_raw_profiles_by_longitude-45.png

[[46]]

Past versions of plot_raw_profiles_by_longitude-46.png

[[47]]

Past versions of plot_raw_profiles_by_longitude-47.png

[[48]]

Past versions of plot_raw_profiles_by_longitude-48.png

[[49]]

Past versions of plot_raw_profiles_by_longitude-49.png

[[50]]

Past versions of plot_raw_profiles_by_longitude-50.png

[[51]]

Past versions of plot_raw_profiles_by_longitude-51.png

[[52]]

Past versions of plot_raw_profiles_by_longitude-52.png

[[53]]

Past versions of plot_raw_profiles_by_longitude-53.png

[[54]]

Past versions of plot_raw_profiles_by_longitude-54.png

[[55]]

Past versions of plot_raw_profiles_by_longitude-55.png

[[56]]

Past versions of plot_raw_profiles_by_longitude-56.png

[[57]]

Past versions of plot_raw_profiles_by_longitude-57.png

[[58]]

Past versions of plot_raw_profiles_by_longitude-58.png

[[59]]

Past versions of plot_raw_profiles_by_longitude-59.png

[[60]]

Past versions of plot_raw_profiles_by_longitude-60.png

[[61]]

Past versions of plot_raw_profiles_by_longitude-61.png

[[62]]

Past versions of plot_raw_profiles_by_longitude-62.png

[[63]]

Past versions of plot_raw_profiles_by_longitude-63.png

[[64]]

Past versions of plot_raw_profiles_by_longitude-64.png

[[65]]

Past versions of plot_raw_profiles_by_longitude-65.png

[[66]]

Past versions of plot_raw_profiles_by_longitude-66.png

[[67]]

Past versions of plot_raw_profiles_by_longitude-67.png

[[68]]

Past versions of plot_raw_profiles_by_longitude-68.png

[[69]]

Past versions of plot_raw_profiles_by_longitude-69.png

[[70]]

Past versions of plot_raw_profiles_by_longitude-70.png

[[71]]

Past versions of plot_raw_profiles_by_longitude-71.png

[[72]]

Past versions of plot_raw_profiles_by_longitude-72.png

[[73]]

Past versions of plot_raw_profiles_by_longitude-73.png

[[74]]

Past versions of plot_raw_profiles_by_longitude-74.png

[[75]]

Past versions of plot_raw_profiles_by_longitude-75.png

Profiles by latitude

# color the argo profiles according to their latitude, for each biome, basin, and year 

full_argo_SO %>% 
  group_split(biome, basin_AIP, year) %>% 
  # head(6) %>% 
  map(
    ~ ggplot(data = .x,
             aes(x = temp_adjusted,
                 y = depth,
                 group = platform_cycle,
                 col = lat))+
      geom_path(data = .x,
                aes(x = temp_adjusted,
                    y = depth,
                    group = platform_cycle,
                    col = lat), 
                size = 0.3)+
      scale_y_reverse()+
      scale_color_viridis_c()+
      facet_wrap(~month, ncol = 6)+
      labs(title = paste0('biome: ', unique(.x$biome), '| basin: ', unique(.x$basin_AIP), ' |', unique(.x$year)),
           x = 'Argo temperature (ºC)',
           y = 'depth (m)',
           col = 'latitude')
  )

[[1]]

Past versions of plot_raw_profiles_by_latitude-1.png

[[2]]

Past versions of plot_raw_profiles_by_latitude-2.png

[[3]]

Past versions of plot_raw_profiles_by_latitude-3.png

[[4]]

Past versions of plot_raw_profiles_by_latitude-4.png

[[5]]

Past versions of plot_raw_profiles_by_latitude-5.png

[[6]]

Past versions of plot_raw_profiles_by_latitude-6.png

[[7]]

Past versions of plot_raw_profiles_by_latitude-7.png

[[8]]

Past versions of plot_raw_profiles_by_latitude-8.png

[[9]]

Past versions of plot_raw_profiles_by_latitude-9.png

[[10]]

Past versions of plot_raw_profiles_by_latitude-10.png

[[11]]

Past versions of plot_raw_profiles_by_latitude-11.png

[[12]]

Past versions of plot_raw_profiles_by_latitude-12.png

[[13]]

Past versions of plot_raw_profiles_by_latitude-13.png

[[14]]

Past versions of plot_raw_profiles_by_latitude-14.png

[[15]]

Past versions of plot_raw_profiles_by_latitude-15.png

[[16]]

Past versions of plot_raw_profiles_by_latitude-16.png

[[17]]

Past versions of plot_raw_profiles_by_latitude-17.png

[[18]]

Past versions of plot_raw_profiles_by_latitude-18.png

[[19]]

Past versions of plot_raw_profiles_by_latitude-19.png

[[20]]

Past versions of plot_raw_profiles_by_latitude-20.png

[[21]]

Past versions of plot_raw_profiles_by_latitude-21.png

[[22]]

Past versions of plot_raw_profiles_by_latitude-22.png

[[23]]

Past versions of plot_raw_profiles_by_latitude-23.png

[[24]]

Past versions of plot_raw_profiles_by_latitude-24.png

[[25]]

Past versions of plot_raw_profiles_by_latitude-25.png

[[26]]

Past versions of plot_raw_profiles_by_latitude-26.png

[[27]]

Past versions of plot_raw_profiles_by_latitude-27.png

[[28]]

Past versions of plot_raw_profiles_by_latitude-28.png

[[29]]

Past versions of plot_raw_profiles_by_latitude-29.png

[[30]]

Past versions of plot_raw_profiles_by_latitude-30.png

[[31]]

Past versions of plot_raw_profiles_by_latitude-31.png

[[32]]

Past versions of plot_raw_profiles_by_latitude-32.png

[[33]]

Past versions of plot_raw_profiles_by_latitude-33.png

[[34]]

Past versions of plot_raw_profiles_by_latitude-34.png

[[35]]

Past versions of plot_raw_profiles_by_latitude-35.png

[[36]]

Past versions of plot_raw_profiles_by_latitude-36.png

[[37]]

Past versions of plot_raw_profiles_by_latitude-37.png

[[38]]

Past versions of plot_raw_profiles_by_latitude-38.png

[[39]]

Past versions of plot_raw_profiles_by_latitude-39.png

[[40]]

Past versions of plot_raw_profiles_by_latitude-40.png

[[41]]

Past versions of plot_raw_profiles_by_latitude-41.png

[[42]]

Past versions of plot_raw_profiles_by_latitude-42.png

[[43]]

Past versions of plot_raw_profiles_by_latitude-43.png

[[44]]

Past versions of plot_raw_profiles_by_latitude-44.png

[[45]]

Past versions of plot_raw_profiles_by_latitude-45.png

[[46]]

Past versions of plot_raw_profiles_by_latitude-46.png

[[47]]

Past versions of plot_raw_profiles_by_latitude-47.png

[[48]]

Past versions of plot_raw_profiles_by_latitude-48.png

[[49]]

Past versions of plot_raw_profiles_by_latitude-49.png

[[50]]

Past versions of plot_raw_profiles_by_latitude-50.png

[[51]]

Past versions of plot_raw_profiles_by_latitude-51.png

[[52]]

Past versions of plot_raw_profiles_by_latitude-52.png

[[53]]

Past versions of plot_raw_profiles_by_latitude-53.png

[[54]]

Past versions of plot_raw_profiles_by_latitude-54.png

[[55]]

Past versions of plot_raw_profiles_by_latitude-55.png

[[56]]

Past versions of plot_raw_profiles_by_latitude-56.png

[[57]]

Past versions of plot_raw_profiles_by_latitude-57.png

[[58]]

Past versions of plot_raw_profiles_by_latitude-58.png

[[59]]

Past versions of plot_raw_profiles_by_latitude-59.png

[[60]]

Past versions of plot_raw_profiles_by_latitude-60.png

[[61]]

Past versions of plot_raw_profiles_by_latitude-61.png

[[62]]

Past versions of plot_raw_profiles_by_latitude-62.png

[[63]]

Past versions of plot_raw_profiles_by_latitude-63.png

[[64]]

Past versions of plot_raw_profiles_by_latitude-64.png

[[65]]

Past versions of plot_raw_profiles_by_latitude-65.png

[[66]]

Past versions of plot_raw_profiles_by_latitude-66.png

[[67]]

Past versions of plot_raw_profiles_by_latitude-67.png

[[68]]

Past versions of plot_raw_profiles_by_latitude-68.png

[[69]]

Past versions of plot_raw_profiles_by_latitude-69.png

[[70]]

Past versions of plot_raw_profiles_by_latitude-70.png

[[71]]

Past versions of plot_raw_profiles_by_latitude-71.png

[[72]]

Past versions of plot_raw_profiles_by_latitude-72.png

[[73]]

Past versions of plot_raw_profiles_by_latitude-73.png

[[74]]

Past versions of plot_raw_profiles_by_latitude-74.png

[[75]]

Past versions of plot_raw_profiles_by_latitude-75.png

Profiles by year

# plot all years in each month 
full_argo_SO %>% 
  group_split(biome, basin_AIP) %>% 
  # head(2) %>% 
  map(
    ~ ggplot(data = .x,
             aes(x = temp_adjusted,
                 y = depth,
                 group = platform_cycle,
                 col = as.character(year)))+
      geom_path(data = .x,
                aes(x = temp_adjusted,
                    y = depth,
                    group = platform_cycle,
                    col = as.character(year)), 
                size = 0.3)+
      scale_y_reverse()+
      facet_wrap(~month, ncol = 6)+
      labs(title = paste0('biome: ', unique(.x$biome), '| basin: ', unique(.x$basin_AIP)),
           x = 'Argo temperature (ºC)',
           y = 'depth (m)',
           col = 'year')
  )

Session information

sessionInfo()

R version 4.1.2 (2021-11-01)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.3

Matrix products: default
BLAS:   /usr/local/R-4.1.2/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.1.2/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] ggforce_0.3.3     metR_0.11.0       scico_1.3.0       ggOceanMaps_1.2.6
 [5] ggspatial_1.1.5   broom_0.7.11      lubridate_1.8.0   forcats_0.5.1    
 [9] stringr_1.4.0     dplyr_1.0.7       purrr_0.3.4       readr_2.1.1      
[13] tidyr_1.1.4       tibble_3.1.6      ggplot2_3.3.5     tidyverse_1.3.1  
[17] workflowr_1.7.0  

loaded via a namespace (and not attached):
 [1] fs_1.5.2           sf_1.0-5           bit64_4.0.5        RColorBrewer_1.1-2
 [5] httr_1.4.2         rprojroot_2.0.2    tools_4.1.2        backports_1.4.1   
 [9] bslib_0.3.1        utf8_1.2.2         rgdal_1.5-28       R6_2.5.1          
[13] KernSmooth_2.23-20 rgeos_0.5-9        DBI_1.1.2          colorspace_2.0-2  
[17] raster_3.5-11      withr_2.4.3        sp_1.4-6           tidyselect_1.1.1  
[21] processx_3.5.2     bit_4.0.4          compiler_4.1.2     git2r_0.29.0      
[25] cli_3.1.1          rvest_1.0.2        xml2_1.3.3         labeling_0.4.2    
[29] sass_0.4.0         checkmate_2.0.0    scales_1.1.1       classInt_0.4-3    
[33] callr_3.7.0        proxy_0.4-26       digest_0.6.29      rmarkdown_2.11    
[37] pkgconfig_2.0.3    htmltools_0.5.2    highr_0.9          dbplyr_2.1.1      
[41] fastmap_1.1.0      rlang_1.0.2        readxl_1.3.1       rstudioapi_0.13   
[45] farver_2.1.0       jquerylib_0.1.4    generics_0.1.1     jsonlite_1.7.3    
[49] vroom_1.5.7        magrittr_2.0.1     Rcpp_1.0.8         munsell_0.5.0     
[53] fansi_1.0.2        lifecycle_1.0.1    terra_1.5-12       stringi_1.7.6     
[57] whisker_0.4        yaml_2.2.1         MASS_7.3-55        grid_4.1.2        
[61] parallel_4.1.2     promises_1.2.0.1   crayon_1.4.2       lattice_0.20-45   
[65] haven_2.4.3        hms_1.1.1          knitr_1.37         ps_1.6.0          
[69] pillar_1.6.4       codetools_0.2-18   reprex_2.0.1       glue_1.6.0        
[73] evaluate_0.14      getPass_0.2-2      data.table_1.14.2  modelr_0.1.8      
[77] tweenr_1.0.2       vctrs_0.3.8        tzdb_0.2.0         httpuv_1.6.5      
[81] cellranger_1.1.0   polyclip_1.10-0    gtable_0.3.0       assertthat_0.2.1  
[85] xfun_0.29          e1071_1.7-9        later_1.3.0        viridisLite_0.4.0 
[89] class_7.3-20       units_0.7-2        ellipsis_0.3.2