Mapping - target variable

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Last updated: 2021-08-01

Checks: 7 0

Knit directory: emlr_mod_v_XXX/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

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R Markdown file: up-to-date

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Seed: set.seed(20200707)

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Session information: recorded

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Repository version: a426124

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Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

---

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/mapping_target_variable.Rmd) and HTML (docs/mapping_target_variable.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
html	2666bd7	Donghe-Zhu	2021-08-01	Build site.
html	e51cfa2	Donghe-Zhu	2021-08-01	Build site.
html	78cbc18	Donghe-Zhu	2021-08-01	Build site.
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html	af832ef	Donghe-Zhu	2021-07-31	Build site.
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html	3ba7852	Donghe-Zhu	2021-07-29	Build site.
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html	7bb279a	Donghe-Zhu	2021-07-23	Build site.
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html	419cb72	Donghe-Zhu	2021-07-22	Build site.
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html	4dce223	Donghe-Zhu	2021-07-20	Build site.
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html	db1e7b7	Donghe-Zhu	2021-07-19	Build site.
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html	57d0420	Donghe-Zhu	2021-07-16	Build site.
html	c1be8f6	Donghe-Zhu	2021-07-16	1
html	26a7c15	Donghe-Zhu	2021-07-16	Build site.
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html	fe3a1cd	Donghe-Zhu	2021-07-06	Build site.
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html	7397e53	Donghe-Zhu	2021-07-05	Build site.
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html	f59f1b3	Donghe-Zhu	2021-07-05	Build site.
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html	cb1c8dc	Donghe-Zhu	2021-07-04	Build site.
html	c9bdd83	Donghe-Zhu	2021-07-04	Build site.
html	1920ad9	Donghe-Zhu	2021-07-04	Build site.
html	0b02791	Donghe-Zhu	2021-06-25	change random subset files
html	caf62d8	Donghe-Zhu	2021-06-25	Build site.
html	90a9da5	Donghe-Zhu	2021-06-25	Build site.
html	bb413c8	Donghe-Zhu	2021-06-25	Build site.
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Rmd	76ce72b	Donghe-Zhu	2021-06-24	local rebuild
html	d517836	Donghe-Zhu	2021-06-24	0
html	9221bfe	Donghe-Zhu	2021-06-24	Build site.
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html	61cae2b	Donghe-Zhu	2021-06-20	1
html	d20c383	Donghe-Zhu	2021-06-18	Build site.
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html	65c89c8	Donghe-Zhu	2021-06-06	Build site.
html	9baa3b2	Donghe-Zhu	2021-06-06	debug
html	b7d99cf	Donghe-Zhu	2021-06-06	Build site.
html	5d8fa90	Donghe-Zhu	2021-06-06	Build site.
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html	2705a04	Donghe-Zhu	2021-03-28	Build site.
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---

1 Scope

Map 3d fields of the predicted target variable (either tco2, cstar or cstar_tref) based on fitted MLRs and climatological fields of predictor variables. In contrast to the direct Cant calculation based on coefficient differences, we apply here the fitted coefficients directly. Cant could also be estimates as the differences between the target variable fields mapped here.

2 Required data

2.1 Predictor fields

Currently, we use following cmorized climatology predictor fields in 2007:

predictors <-
  read_csv(paste(path_version_data,
                 "predictors_M2007.csv",
                 sep = ""))

2.2 MLR models

lm_best_target <-
  read_csv(paste(path_version_data,
                 "lm_best_target.csv",
                 sep = ""))

3 Join MLR + climatologies

# remove predictor variable from model
lm_best_target <- lm_best_target %>%
  mutate(model = str_remove(model, paste(params_local$MLR_target, "~ ")))

# join predictors and MLR
target <- full_join(predictors, lm_best_target)

rm(predictors, lm_best_target)

4 Map target variable

4.1 Apply MLRs to predictor

target <- b_target_model(target)

target <- target %>%
  select(lon,
         lat,
         depth,
         era,
         eras,
         basin,
         basin_AIP,
         gamma,
         params_local$MLR_target)

4.2 Average model target variable

target_average <- m_target_model_average(target)
target_average <- m_cut_gamma(target_average, "gamma")

rm(target)

4.3 Zonal mean sections

For each basin and era combination, the zonal mean of the target variable is calculated. Likewise, sd is calculated for the averaging of the mean basin fields.

target_average_zonal <- m_target_zonal_mean(target_average)
target_average_zonal <- m_cut_gamma(target_average_zonal, "gamma_mean")

5 Write csv

target_average %>%
  write_csv(paste(path_version_data,
                  "target_3d.csv",
                  sep = ""))

target_average_zonal %>%
  write_csv(paste(path_version_data,
                  "target_zonal.csv",
                  sep = ""))

Session information

sessionInfo()

R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.2

Matrix products: default
BLAS:   /usr/local/R-4.0.3/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.0.3/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] ggforce_0.3.3   metR_0.9.0      scico_1.2.0     patchwork_1.1.1
 [5] collapse_1.5.0  forcats_0.5.0   stringr_1.4.0   dplyr_1.0.5    
 [9] purrr_0.3.4     readr_1.4.0     tidyr_1.1.2     tibble_3.0.4   
[13] ggplot2_3.3.3   tidyverse_1.3.0 workflowr_1.6.2

loaded via a namespace (and not attached):
 [1] httr_1.4.2               jsonlite_1.7.2           here_1.0.1              
 [4] modelr_0.1.8             assertthat_0.2.1         blob_1.2.1              
 [7] cellranger_1.1.0         yaml_2.2.1               pillar_1.4.7            
[10] backports_1.1.10         lattice_0.20-41          glue_1.4.2              
[13] RcppEigen_0.3.3.9.1      digest_0.6.27            promises_1.1.1          
[16] polyclip_1.10-0          checkmate_2.0.0          rvest_0.3.6             
[19] colorspace_2.0-0         htmltools_0.5.0          httpuv_1.5.4            
[22] Matrix_1.2-18            pkgconfig_2.0.3          broom_0.7.5             
[25] haven_2.3.1              scales_1.1.1             tweenr_1.0.2            
[28] whisker_0.4              later_1.1.0.1            git2r_0.27.1            
[31] generics_0.1.0           farver_2.0.3             ellipsis_0.3.1          
[34] withr_2.3.0              cli_2.2.0                magrittr_2.0.1          
[37] crayon_1.3.4             readxl_1.3.1             evaluate_0.14           
[40] fs_1.5.0                 fansi_0.4.1              MASS_7.3-53             
[43] xml2_1.3.2               RcppArmadillo_0.10.1.2.2 tools_4.0.3             
[46] data.table_1.13.6        hms_0.5.3                lifecycle_1.0.0         
[49] munsell_0.5.0            reprex_0.3.0             compiler_4.0.3          
[52] rlang_0.4.10             grid_4.0.3               rstudioapi_0.13         
[55] rmarkdown_2.5            gtable_0.3.0             DBI_1.1.0               
[58] R6_2.5.0                 lubridate_1.7.9          knitr_1.30              
[61] rprojroot_2.0.2          stringi_1.5.3            parallel_4.0.3          
[64] Rcpp_1.0.5               vctrs_0.3.6              dbplyr_1.4.4            
[67] tidyselect_1.1.0         xfun_0.20