Last updated: 2021-03-11

Checks: 7 0

Knit directory: emlr_mod_v_XXX/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

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Environment: empty

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Seed: set.seed(20200707)

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Session information: recorded

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Cache: none

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File paths: relative

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Repository version: 632a43c

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The results in this page were generated with repository version 632a43c. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
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    Deleted:    a.png
    Modified:   data/auxillary/params_local.rds

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Rmd 8e8abf5 Jens Müller 2020-12-18 Initial commit

1 Required packages

Packages available on CRAN are not listed here.

Following packages need to be installed but are not available on CRAN:

  • None

Run the code below for installation from Github repositories.

Previously, following packages were required, but are not used currently:

# remotes::install_github("moodymudskipper/cutr")
# remotes::install_github("rsquaredacademy/olsrr", ref = "develop")

2 Python

2.1 Code

Python code used in this project is stored on updata and sourced from there, when required in .Rmd files.

2.2 Required packages

To install required python packages from within R-Studio, run the code below. On ETH servers, those packages are already installed.

# the commands below must only be run once, when you first run the python code and need to install required packages

py_install("pandas")
py_install("numpy")
py_install("shapely")
py_install("math")

sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.2

Matrix products: default
BLAS:   /usr/local/R-4.0.3/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.0.3/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] reticulate_1.18 workflowr_1.6.2

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.5      rstudioapi_0.13 whisker_0.4     knitr_1.30     
 [5] magrittr_2.0.1  lattice_0.20-41 R6_2.5.0        rlang_0.4.10   
 [9] stringr_1.4.0   tools_4.0.3     grid_4.0.3      xfun_0.20      
[13] git2r_0.27.1    htmltools_0.5.0 ellipsis_0.3.1  rprojroot_2.0.2
[17] yaml_2.2.1      digest_0.6.27   tibble_3.0.4    lifecycle_0.2.0
[21] crayon_1.3.4    Matrix_1.2-18   later_1.1.0.1   vctrs_0.3.6    
[25] promises_1.1.1  fs_1.5.0        glue_1.4.2      evaluate_0.14  
[29] rmarkdown_2.5   stringi_1.5.3   compiler_4.0.3  pillar_1.4.7   
[33] jsonlite_1.7.2  httpuv_1.5.4    pkgconfig_2.0.3