Last updated: 2021-07-05
Checks: 7 0
Knit directory: emlr_mod_v_XXX/
This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.
The command set.seed(20200707) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.
Great job! Recording the operating system, R version, and package versions is critical for reproducibility.
Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.
Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version a843db0. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files:
Ignored: .Rhistory
Ignored: .Rproj.user/
Untracked files:
Untracked: docs_1982-1999_2000-2012_GC_0.5/
Untracked: docs_1982-1999_2000-2012_GV_1.0/
Untracked: docs_1982-1999_2000-2012_RC_3.3/
Untracked: docs_1982-1999_2000-2012_RC_SO_1.7/
Untracked: docs_1982-1999_2000-2012_RV_3.7/
Untracked: docs_1982-1999_2000-2012_RV_SO_1.8/
Untracked: docs_2000-2009_2010-2019_GV_1.5/
Unstaged changes:
Modified: data/auxillary/params_local.rds
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were made to the R Markdown (analysis/config_parameterization_local.Rmd) and HTML (docs/config_parameterization_local.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | a843db0 | Donghe-Zhu | 2021-07-05 | local rebuild |
| html | 85e0349 | Donghe-Zhu | 2021-07-05 | Build site. |
| Rmd | e08c21b | Donghe-Zhu | 2021-07-05 | local rebuild |
| html | 6ee0146 | Donghe-Zhu | 2021-07-05 | Build site. |
| Rmd | b3f5f33 | Donghe-Zhu | 2021-07-05 | local rebuild |
| html | a482a6b | Donghe-Zhu | 2021-07-05 | Build site. |
| Rmd | 004e07e | Donghe-Zhu | 2021-07-05 | local rebuild |
| html | f59f1b3 | Donghe-Zhu | 2021-07-05 | Build site. |
| Rmd | 2ae023d | Donghe-Zhu | 2021-07-04 | local rebuild |
| html | 116bcab | Donghe-Zhu | 2021-07-04 | Build site. |
| Rmd | 5254b21 | Donghe-Zhu | 2021-07-04 | local rebuild |
| html | cb1c8dc | Donghe-Zhu | 2021-07-04 | Build site. |
| Rmd | efea5af | Donghe-Zhu | 2021-07-04 | local rebuild |
| html | c9bdd83 | Donghe-Zhu | 2021-07-04 | Build site. |
| html | 1920ad9 | Donghe-Zhu | 2021-07-04 | Build site. |
| Rmd | c62d3c0 | Donghe-Zhu | 2021-07-04 | local rebuild |
| html | 0b02791 | Donghe-Zhu | 2021-06-25 | change random subset files |
| html | caf62d8 | Donghe-Zhu | 2021-06-25 | Build site. |
| Rmd | cc5e026 | Donghe-Zhu | 2021-06-25 | local rebuild |
| html | 90a9da5 | Donghe-Zhu | 2021-06-25 | Build site. |
| Rmd | 3b3f062 | Donghe-Zhu | 2021-06-25 | local rebuild |
| html | bb413c8 | Donghe-Zhu | 2021-06-25 | Build site. |
| Rmd | 62218ac | Donghe-Zhu | 2021-06-24 | local rebuild |
| html | e7a5266 | Donghe-Zhu | 2021-06-24 | Build site. |
| Rmd | 3597762 | Donghe-Zhu | 2021-06-24 | local rebuild |
| html | 7c57720 | Donghe-Zhu | 2021-06-24 | Build site. |
| Rmd | 5c78ac8 | Donghe-Zhu | 2021-06-24 | local rebuild |
| html | b5b95a9 | Donghe-Zhu | 2021-06-24 | Build site. |
| Rmd | 690fdc5 | Donghe-Zhu | 2021-06-24 | local rebuild |
| html | 472aad4 | Donghe-Zhu | 2021-06-24 | Build site. |
| Rmd | 76ce72b | Donghe-Zhu | 2021-06-24 | local rebuild |
| html | d517836 | Donghe-Zhu | 2021-06-24 | 0 |
| html | 9221bfe | Donghe-Zhu | 2021-06-24 | Build site. |
| Rmd | 826069f | Donghe-Zhu | 2021-06-24 | local rebuild |
| html | bff5fbf | Donghe-Zhu | 2021-06-23 | Build site. |
| Rmd | a302ba7 | Donghe-Zhu | 2021-06-23 | local rebuild |
| html | 256a616 | Donghe-Zhu | 2021-06-23 | Build site. |
| Rmd | 9215980 | Donghe-Zhu | 2021-06-23 | local rebuild |
| html | 00072e2 | Donghe-Zhu | 2021-06-23 | Build site. |
| Rmd | 71d2509 | Donghe-Zhu | 2021-06-23 | local rebuild |
| html | 61cae2b | Donghe-Zhu | 2021-06-20 | 1 |
| html | d20c383 | Donghe-Zhu | 2021-06-18 | Build site. |
| Rmd | 3726376 | Donghe-Zhu | 2021-06-18 | local rebuild |
| Rmd | 4bd2e6f | Donghe-Zhu | 2021-06-17 | local rebuild |
| html | b0874a2 | Donghe-Zhu | 2021-06-17 | Build site. |
| Rmd | 247820f | Donghe-Zhu | 2021-06-17 | local rebuild |
| html | 72c2f2e | Donghe-Zhu | 2021-06-15 | Build site. |
| html | d97dcb6 | Donghe-Zhu | 2021-06-08 | 1 |
| html | 25dda1d | Donghe-Zhu | 2021-06-08 | Build site. |
| Rmd | 0f0b9cc | Donghe-Zhu | 2021-06-08 | local rebuild |
| html | bd2bcc3 | Donghe-Zhu | 2021-06-08 | Build site. |
| Rmd | e5ff109 | Donghe-Zhu | 2021-06-07 | local rebuild |
| html | e9b27d7 | Donghe-Zhu | 2021-06-07 | Build site. |
| Rmd | 8aabff4 | Donghe-Zhu | 2021-06-07 | local rebuild |
| html | 7ae0d4b | Donghe-Zhu | 2021-06-07 | Build site. |
| Rmd | 4f1e11e | Donghe-Zhu | 2021-06-07 | local rebuild |
| html | 325391f | Donghe-Zhu | 2021-06-07 | Build site. |
| Rmd | c37cb62 | Donghe-Zhu | 2021-06-07 | local rebuild |
| html | ed89970 | Donghe-Zhu | 2021-06-07 | Build site. |
| Rmd | d0e337f | Donghe-Zhu | 2021-06-07 | local rebuild |
| html | df37958 | Donghe-Zhu | 2021-06-07 | 1 |
| html | 812bf63 | Donghe-Zhu | 2021-06-06 | Build site. |
| html | 65c89c8 | Donghe-Zhu | 2021-06-06 | Build site. |
| Rmd | 9baa3b2 | Donghe-Zhu | 2021-06-06 | debug |
| html | 9baa3b2 | Donghe-Zhu | 2021-06-06 | debug |
| html | b7d99cf | Donghe-Zhu | 2021-06-06 | Build site. |
| Rmd | 6ecd057 | Donghe-Zhu | 2021-06-06 | local rebuild |
| html | 5d8fa90 | Donghe-Zhu | 2021-06-06 | Build site. |
| Rmd | 0a2d9c1 | Donghe-Zhu | 2021-06-06 | local rebuild |
| html | dbe2a95 | Donghe-Zhu | 2021-05-28 | Build site. |
| Rmd | fa98c69 | Donghe-Zhu | 2021-05-28 | local rebuild |
| html | d50b039 | Donghe-Zhu | 2021-05-28 | Build site. |
| Rmd | 741349a | Donghe-Zhu | 2021-05-28 | local rebuild |
| html | 441ebe5 | Donghe-Zhu | 2021-05-28 | Build site. |
| Rmd | 43a3e33 | Donghe-Zhu | 2021-05-28 | local rebuild |
| html | 6262ad3 | Donghe-Zhu | 2021-05-28 | Build site. |
| Rmd | f6d11e2 | Donghe-Zhu | 2021-05-28 | local rebuild |
| html | a61aa77 | Donghe-Zhu | 2021-05-28 | Build site. |
| Rmd | b871bd5 | Donghe-Zhu | 2021-05-28 | local rebuild |
| html | b8dbce4 | Donghe-Zhu | 2021-05-28 | Build site. |
| Rmd | c29cc35 | Donghe-Zhu | 2021-05-28 | local rebuild |
| html | 94a833e | Donghe-Zhu | 2021-05-27 | Build site. |
| Rmd | 92eecbf | Donghe-Zhu | 2021-05-27 | local rebuild |
| html | 5e0bd64 | Donghe-Zhu | 2021-05-27 | Build site. |
| Rmd | d23f4f4 | Donghe-Zhu | 2021-05-27 | local rebuild |
| html | af1eadd | Donghe-Zhu | 2021-05-27 | Build site. |
| Rmd | 52fbb3f | Donghe-Zhu | 2021-05-27 | local rebuild |
| html | 9179bfe | Donghe-Zhu | 2021-05-27 | Build site. |
| Rmd | 9bbf8ac | Donghe-Zhu | 2021-05-27 | local rebuild |
| html | 28cbe5e | Donghe-Zhu | 2021-05-27 | Build site. |
| Rmd | 8fd4403 | Donghe-Zhu | 2021-05-27 | local rebuild |
| html | a618f02 | Donghe-Zhu | 2021-05-27 | Build site. |
| Rmd | ce2907e | Donghe-Zhu | 2021-05-27 | local rebuild |
| html | 4623e38 | Donghe-Zhu | 2021-05-27 | Build site. |
| Rmd | ae7d139 | Donghe-Zhu | 2021-05-27 | local rebuild |
| html | b81bb49 | Donghe-Zhu | 2021-05-27 | Build site. |
| Rmd | 7ad06e8 | Donghe-Zhu | 2021-05-27 | local rebuild |
| html | 951e188 | Donghe-Zhu | 2021-05-27 | Build site. |
| Rmd | 891c3bb | Donghe-Zhu | 2021-05-26 | local rebuild |
| html | e377833 | Donghe-Zhu | 2021-05-26 | Build site. |
| Rmd | d725834 | Donghe-Zhu | 2021-05-26 | local rebuild |
| Rmd | 896faa0 | Donghe-Zhu | 2021-05-18 | final |
| html | 2705a04 | Donghe-Zhu | 2021-03-28 | Build site. |
| Rmd | 6d188e2 | Donghe-Zhu | 2021-03-28 | local rebuild |
| html | cd5f759 | Donghe-Zhu | 2021-03-28 | Build site. |
| Rmd | 347fb44 | Donghe-Zhu | 2021-03-28 | local rebuild |
| html | 75dda4d | Donghe-Zhu | 2021-03-27 | Build site. |
| Rmd | 008583c | Donghe-Zhu | 2021-03-27 | local rebuild |
| html | 0b19f6e | Donghe-Zhu | 2021-03-27 | Build site. |
| Rmd | a52ad87 | Donghe-Zhu | 2021-03-27 | local rebuild |
| html | e2704ca | Donghe-Zhu | 2021-03-27 | Build site. |
| Rmd | b1706de | Donghe-Zhu | 2021-03-27 | local rebuild |
| html | 3061a0b | Donghe-Zhu | 2021-03-27 | Build site. |
| Rmd | 88206bb | Donghe-Zhu | 2021-03-27 | local rebuild |
| html | b883157 | Donghe-Zhu | 2021-03-27 | Build site. |
| Rmd | fff5f0d | Donghe-Zhu | 2021-03-27 | local rebuild |
| html | 0c20513 | Donghe-Zhu | 2021-03-26 | Build site. |
| Rmd | 003af00 | Donghe-Zhu | 2021-03-26 | local rebuild |
| html | d19654d | Donghe-Zhu | 2021-03-26 | Build site. |
| Rmd | 921c9db | Donghe-Zhu | 2021-03-26 | local rebuild |
| html | 6c53dbf | Donghe-Zhu | 2021-03-25 | Build site. |
| Rmd | 195db95 | Donghe-Zhu | 2021-03-24 | local rebuild |
| html | 1914a11 | Donghe-Zhu | 2021-03-24 | Build site. |
| Rmd | e32af14 | Donghe-Zhu | 2021-03-24 | local rebuild |
| html | 8be810e | Donghe-Zhu | 2021-03-23 | Build site. |
| Rmd | 85274db | Donghe-Zhu | 2021-03-23 | local rebuild |
| html | bf19764 | Donghe-Zhu | 2021-03-22 | Build site. |
| Rmd | 168e154 | Donghe-Zhu | 2021-03-22 | local rebuild |
| html | 3ec9d3d | Donghe-Zhu | 2021-03-22 | Build site. |
| Rmd | 073fa6a | Donghe-Zhu | 2021-03-22 | local rebuild |
| html | 134ace1 | Donghe-Zhu | 2021-03-22 | Build site. |
| Rmd | 787bf22 | Donghe-Zhu | 2021-03-22 | local rebuild |
| html | f6d70a4 | Donghe-Zhu | 2021-03-22 | Build site. |
| Rmd | 4ca606d | Donghe-Zhu | 2021-03-22 | local rebuild |
| html | 183443b | Donghe-Zhu | 2021-03-21 | Build site. |
| Rmd | adca794 | Donghe-Zhu | 2021-03-21 | local rebuild |
| html | 2e6976b | Donghe-Zhu | 2021-03-21 | Build site. |
| Rmd | 4e7de35 | Donghe-Zhu | 2021-03-21 | local rebuild |
| html | 51a42bd | Donghe-Zhu | 2021-03-16 | Build site. |
| Rmd | 49d7033 | Donghe-Zhu | 2021-03-16 | local rebuild |
| html | f745381 | Donghe-Zhu | 2021-03-16 | Build site. |
| Rmd | 323f626 | Donghe-Zhu | 2021-03-16 | local rebuild |
| html | aecbf75 | Donghe-Zhu | 2021-03-14 | Build site. |
| Rmd | e2a0ef4 | Donghe-Zhu | 2021-03-14 | local rebuild |
| html | 1b2a0c2 | Donghe-Zhu | 2021-03-14 | Build site. |
| Rmd | b0f7dfe | Donghe-Zhu | 2021-03-14 | local rebuild |
| html | 6733e48 | Donghe-Zhu | 2021-03-12 | Build site. |
| Rmd | 98f8522 | Donghe-Zhu | 2021-03-12 | local rebuild |
| html | ba71e6a | Donghe-Zhu | 2021-03-12 | Build site. |
| Rmd | 3ed96fb | Donghe-Zhu | 2021-03-12 | local rebuild |
| html | 9dbf5bd | Donghe-Zhu | 2021-03-11 | Build site. |
| Rmd | 632a43c | Donghe-Zhu | 2021-03-11 | local rebuild |
| html | a49df30 | Donghe-Zhu | 2021-03-11 | Build site. |
| Rmd | ed48139 | Donghe-Zhu | 2021-03-11 | local rebuild |
| html | b3348a5 | Donghe-Zhu | 2021-03-11 | Build site. |
| Rmd | 026c061 | Donghe-Zhu | 2021-03-11 | local rebuild |
| html | 1c24ff7 | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | dbd8ff8 | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | 94ce5a8 | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | 05657ed | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | db33928 | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | d12b395 | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | 3d1f470 | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | abf383e | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | 9b7bc66 | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | 498be1d | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | 4168b43 | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | f478e8a | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | 5365f80 | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | 853ef27 | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | 2b6c392 | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | fcd6530 | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | 9f58753 | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | e255177 | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | f2a7146 | Donghe-Zhu | 2021-03-10 | Build site. |
| html | fd528ed | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | bcf3031 | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | 9d5a62c | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | 09b27ef | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | 5d1e70b | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | 6125b2d | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | 2093979 | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | 558d285 | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | b865899 | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | 38fa816 | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | cc2a956 | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | 2a633bd | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | 60689fb | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | 2a92509 | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | 9230b52 | Donghe-Zhu | 2021-03-10 | Build site. |
| Rmd | d0bdaf7 | Donghe-Zhu | 2021-03-10 | local rebuild |
| html | dba33c8 | Donghe-Zhu | 2021-03-09 | Build site. |
| html | 17f1c4a | Donghe-Zhu | 2021-03-09 | Build site. |
| Rmd | 4a4a400 | Donghe-Zhu | 2021-03-09 | local rebuild |
| html | c024d1a | Donghe-Zhu | 2021-03-09 | Build site. |
| html | 02f7242 | Donghe-Zhu | 2021-03-09 | Build site. |
| Rmd | 34e7be8 | Donghe-Zhu | 2021-03-09 | local rebuild |
| html | 6f50bc6 | Donghe-Zhu | 2021-03-09 | Build site. |
| Rmd | 88f0729 | Donghe-Zhu | 2021-03-09 | local rebuild |
| html | 1691156 | Donghe-Zhu | 2021-03-08 | Build site. |
| Rmd | 46e6d83 | Donghe-Zhu | 2021-03-08 | local rebuild |
| html | c0ceaf8 | Donghe-Zhu | 2021-03-08 | Build site. |
| Rmd | 89691d7 | Donghe-Zhu | 2021-03-08 | local rebuild |
| html | 058e0a1 | Donghe-Zhu | 2021-03-08 | Build site. |
| Rmd | 4dc08ab | Donghe-Zhu | 2021-03-08 | local rebuild |
| html | 112dea0 | Donghe-Zhu | 2021-03-08 | Build site. |
| Rmd | 958381f | Donghe-Zhu | 2021-03-08 | local rebuild |
| html | 1843412 | Donghe-Zhu | 2021-03-08 | Build site. |
| Rmd | d709f6c | Donghe-Zhu | 2021-03-08 | local rebuild |
| html | 65b0cef | Donghe-Zhu | 2021-03-07 | Build site. |
| Rmd | 60d6a00 | Donghe-Zhu | 2021-03-07 | local rebuild |
| html | 4083a6c | Donghe-Zhu | 2021-03-07 | Build site. |
| Rmd | 5f550ed | Donghe-Zhu | 2021-03-07 | local rebuild |
| html | 3fbbfa4 | Donghe-Zhu | 2021-03-07 | Build site. |
| Rmd | 6d09ab2 | Donghe-Zhu | 2021-03-07 | local rebuild |
| html | 627c8fb | Donghe-Zhu | 2021-03-07 | Build site. |
| Rmd | 1d44c60 | Donghe-Zhu | 2021-03-07 | local rebuild |
| html | 3607f4d | Donghe-Zhu | 2021-03-07 | Build site. |
| Rmd | 72982d7 | Donghe-Zhu | 2021-03-07 | local rebuild |
| html | 9ef3222 | Donghe-Zhu | 2021-03-05 | Build site. |
| html | 8c1e978 | Donghe-Zhu | 2021-03-05 | Build site. |
| Rmd | 9ae242d | Donghe-Zhu | 2021-03-05 | local rebuild |
| html | 865f68c | Donghe-Zhu | 2021-03-05 | Build site. |
| Rmd | d305e47 | Donghe-Zhu | 2021-03-05 | local rebuild |
| html | ee69bc1 | Donghe-Zhu | 2021-03-05 | Build site. |
| Rmd | 1fea243 | Donghe-Zhu | 2021-03-05 | local rebuild |
| html | a79291f | Donghe-Zhu | 2021-03-05 | Build site. |
| Rmd | cdcf407 | Donghe-Zhu | 2021-03-05 | local rebuild |
| html | e8c6f30 | Donghe-Zhu | 2021-03-04 | Build site. |
| Rmd | 96ab2df | Donghe-Zhu | 2021-03-04 | local rebuild |
| html | 59288fe | Donghe-Zhu | 2021-03-04 | Build site. |
| Rmd | 24ecd89 | Donghe-Zhu | 2021-03-04 | local rebuild |
| html | 731abc8 | Donghe-Zhu | 2021-03-04 | Build site. |
| Rmd | 698d743 | Donghe-Zhu | 2021-03-04 | local rebuild |
| html | e2a5a33 | Donghe-Zhu | 2021-03-04 | Build site. |
| Rmd | c87a098 | Donghe-Zhu | 2021-03-04 | local rebuild |
| html | c7892c1 | Donghe-Zhu | 2021-03-04 | Build site. |
| Rmd | 5fc5a0e | Donghe-Zhu | 2021-03-03 | local rebuild |
| html | 924430b | Donghe-Zhu | 2021-03-03 | Build site. |
| Rmd | 390075e | Donghe-Zhu | 2021-03-03 | local rebuild |
| html | 0d0bca1 | Donghe-Zhu | 2021-03-03 | Build site. |
| Rmd | 8d92471 | Donghe-Zhu | 2021-03-03 | local rebuild |
| html | cb63c16 | Donghe-Zhu | 2021-03-03 | Build site. |
| Rmd | 5bbf264 | Donghe-Zhu | 2021-03-03 | local rebuild |
| html | ffda45a | Donghe-Zhu | 2021-03-03 | Build site. |
| Rmd | 0bf88ab | Donghe-Zhu | 2021-03-03 | local rebuild |
| html | 691ba81 | Donghe-Zhu | 2021-03-03 | Build site. |
| Rmd | 681a18d | Donghe-Zhu | 2021-03-03 | local rebuild |
| html | c5e45a2 | Donghe-Zhu | 2021-03-03 | Build site. |
| Rmd | 8dc15b5 | Donghe-Zhu | 2021-03-03 | local rebuild |
| html | 89c3e58 | Donghe-Zhu | 2021-03-03 | Build site. |
| Rmd | b28742a | Donghe-Zhu | 2021-03-03 | local rebuild |
| html | c407a50 | Donghe-Zhu | 2021-03-03 | Build site. |
| Rmd | 34b37d8 | Donghe-Zhu | 2021-03-03 | local rebuild |
| html | c911669 | Donghe-Zhu | 2021-03-03 | Build site. |
| Rmd | e1f9d21 | Donghe-Zhu | 2021-03-03 | local rebuild |
| html | b71c719 | Donghe-Zhu | 2021-03-01 | Build site. |
| Rmd | 3d903f5 | Donghe-Zhu | 2021-03-01 | local rebuild |
| html | 13666ca | Donghe-Zhu | 2021-03-01 | Build site. |
| Rmd | c3195f4 | Donghe-Zhu | 2021-03-01 | local rebuild |
| html | c6e60fe | Donghe-Zhu | 2021-03-01 | Build site. |
| html | 7a388f7 | Donghe-Zhu | 2021-03-01 | Build site. |
| Rmd | 5a38999 | Donghe-Zhu | 2021-03-01 | local rebuild |
| html | 799e913 | Donghe-Zhu | 2021-03-01 | Build site. |
| Rmd | aa780a7 | Donghe-Zhu | 2021-03-01 | local rebuild |
| html | 66ff99f | Donghe-Zhu | 2021-03-01 | Build site. |
| Rmd | 61c083d | Donghe-Zhu | 2021-03-01 | local rebuild |
| html | ac9bb7a | Donghe-Zhu | 2021-02-28 | Build site. |
| Rmd | bb7c896 | Donghe-Zhu | 2021-02-28 | local rebuild |
| html | efdc047 | Donghe-Zhu | 2021-02-28 | Build site. |
| Rmd | 2e4e69e | Donghe-Zhu | 2021-02-28 | local rebuild |
| html | e9a7418 | Donghe-Zhu | 2021-02-28 | Build site. |
| Rmd | eac1b0e | Donghe-Zhu | 2021-02-28 | local rebuild |
| html | e152917 | Donghe-Zhu | 2021-02-28 | Build site. |
| Rmd | 73658ed | Donghe-Zhu | 2021-02-28 | local rebuild |
| html | feb991c | Donghe-Zhu | 2021-02-27 | Build site. |
| html | 287123c | Donghe-Zhu | 2021-02-27 | Build site. |
| Rmd | 764a9c2 | Donghe-Zhu | 2021-02-27 | local rebuild |
| html | 54d5b5b | Donghe-Zhu | 2021-02-27 | Build site. |
| Rmd | 2e836bf | Donghe-Zhu | 2021-02-27 | local rebuild |
| html | 330f064 | Donghe-Zhu | 2021-02-27 | Build site. |
| Rmd | f360282 | Donghe-Zhu | 2021-02-27 | local rebuild |
| html | adbc9bc | Donghe-Zhu | 2021-02-27 | Build site. |
| Rmd | a8a8f9c | Donghe-Zhu | 2021-02-27 | local rebuild |
| html | 5937141 | Donghe-Zhu | 2021-02-27 | Build site. |
| Rmd | 5f0bfca | Donghe-Zhu | 2021-02-27 | local rebuild |
| html | 4414bbf | Donghe-Zhu | 2021-02-27 | Build site. |
| Rmd | d24665a | Donghe-Zhu | 2021-02-27 | local rebuild |
| html | a265efb | Donghe-Zhu | 2021-02-27 | Build site. |
| Rmd | b4d5c17 | Donghe-Zhu | 2021-02-27 | local rebuild |
| html | 19edd1e | Donghe-Zhu | 2021-02-27 | Build site. |
| Rmd | 1ae5bb4 | Donghe-Zhu | 2021-02-27 | local rebuild |
| html | f20483f | Donghe-Zhu | 2021-02-26 | Build site. |
| Rmd | b3920b1 | Donghe-Zhu | 2021-02-26 | local rebuild |
| html | 6a2c7b3 | Donghe-Zhu | 2021-02-25 | Build site. |
| Rmd | 25aa736 | Donghe-Zhu | 2021-02-25 | local rebuild |
| html | 02b976d | Donghe-Zhu | 2021-02-24 | Build site. |
| Rmd | 309010e | Donghe-Zhu | 2021-02-24 | local rebuild |
| html | 354c224 | Donghe-Zhu | 2021-02-24 | Build site. |
| Rmd | d910d39 | Donghe-Zhu | 2021-02-24 | local rebuild |
| html | 1a0a88a | Donghe-Zhu | 2021-02-24 | Build site. |
| Rmd | 663e891 | Donghe-Zhu | 2021-02-24 | local rebuild |
| html | 57f701e | Donghe-Zhu | 2021-02-24 | Build site. |
| Rmd | 4d9b2d1 | Donghe-Zhu | 2021-02-24 | local rebuild |
| html | 06f3149 | Donghe-Zhu | 2021-02-16 | Build site. |
| Rmd | 716c041 | Donghe-Zhu | 2021-02-15 | local rebuild |
| html | 401eab3 | Donghe-Zhu | 2021-02-15 | Build site. |
| Rmd | 5a31947 | Donghe-Zhu | 2021-02-15 | local rebuild |
| html | e3bba84 | Donghe-Zhu | 2021-02-15 | Build site. |
| Rmd | 9f346bd | Donghe-Zhu | 2021-02-15 | local rebuild |
| html | 5dce4b1 | Donghe-Zhu | 2021-02-15 | Build site. |
| Rmd | 35b0f2e | Donghe-Zhu | 2021-02-15 | local rebuild |
| html | 4469a0c | Donghe-Zhu | 2021-02-13 | Build site. |
| Rmd | c99d126 | Donghe-Zhu | 2021-02-13 | local rebuild |
| Rmd | 8186d57 | Donghe-Zhu | 2021-02-10 | apply nr_obs |
| html | 5ae6a69 | Donghe-Zhu | 2021-02-10 | Build site. |
| Rmd | 6d6aed8 | Donghe-Zhu | 2021-02-10 | 1 |
| html | 05385dc | Donghe-Zhu | 2021-02-10 | Build site. |
| Rmd | 67fa8d0 | Donghe-Zhu | 2021-02-09 | local rebuild |
| html | f791ae4 | Donghe-Zhu | 2021-02-09 | Build site. |
| Rmd | b18769b | Donghe-Zhu | 2021-02-09 | local rebuild |
| html | f71ae34 | Donghe-Zhu | 2021-02-09 | Build site. |
| Rmd | f433615 | Donghe-Zhu | 2021-02-09 | local rebuild |
| html | c011832 | Donghe-Zhu | 2021-02-09 | Build site. |
| Rmd | b7a2ab2 | Donghe-Zhu | 2021-02-09 | local rebuild |
| html | a145fa7 | Donghe-Zhu | 2021-02-09 | Build site. |
| Rmd | 37a41c8 | Donghe-Zhu | 2021-02-09 | local rebuild |
| html | c344e42 | Donghe-Zhu | 2021-02-08 | Build site. |
| Rmd | 8f5fa79 | Donghe-Zhu | 2021-02-08 | local rebuild |
| html | 2f095d7 | Donghe-Zhu | 2021-02-07 | Build site. |
| Rmd | a923be1 | Donghe-Zhu | 2021-02-07 | local rebuild |
| html | 2305044 | Donghe-Zhu | 2021-02-07 | Build site. |
| Rmd | c3638c1 | Donghe-Zhu | 2021-02-07 | local rebuild |
| html | 1fad5f1 | Donghe-Zhu | 2021-02-07 | Build site. |
| Rmd | 3ddd358 | Donghe-Zhu | 2021-02-07 | local rebuild |
| html | ca03c39 | Donghe-Zhu | 2021-02-07 | Build site. |
| Rmd | b8981f0 | Donghe-Zhu | 2021-02-07 | local rebuild |
| html | e2ffc14 | Donghe-Zhu | 2021-02-05 | Build site. |
| Rmd | 55cdfe6 | Donghe-Zhu | 2021-02-05 | local rebuild |
| html | cd7c52c | Donghe-Zhu | 2021-02-04 | Build site. |
| Rmd | 8c4ddb3 | Donghe-Zhu | 2021-02-03 | plots |
| html | bcf84f4 | Donghe-Zhu | 2021-02-02 | Build site. |
| Rmd | fad137a | Donghe-Zhu | 2021-02-02 | local rebuild |
| html | a518739 | Donghe-Zhu | 2021-02-01 | Build site. |
| Rmd | ff9c7e6 | Donghe-Zhu | 2021-02-01 | local rebuild |
| html | 61666de | Donghe-Zhu | 2021-01-31 | Build site. |
| Rmd | 647c56d | Donghe-Zhu | 2021-01-31 | local rebuild |
| html | 865b582 | Donghe-Zhu | 2021-01-31 | Build site. |
| Rmd | d35a1fc | Donghe-Zhu | 2021-01-31 | local rebuild |
| html | 3e68089 | Donghe-Zhu | 2021-01-31 | Build site. |
| Rmd | 727f0d9 | Donghe-Zhu | 2021-01-31 | local rebuild |
| html | ecf335c | Donghe-Zhu | 2021-01-31 | Build site. |
| Rmd | 9781315 | Donghe-Zhu | 2021-01-31 | local rebuild |
| html | a618965 | Donghe-Zhu | 2021-01-31 | Build site. |
| Rmd | a815096 | Donghe-Zhu | 2021-01-31 | local rebuild |
| html | 59e006e | Donghe-Zhu | 2021-01-31 | Build site. |
| Rmd | 7829e3c | Donghe-Zhu | 2021-01-31 | local rebuild |
| html | a1c8f87 | Donghe-Zhu | 2021-01-31 | Build site. |
| Rmd | 66daaf4 | Donghe-Zhu | 2021-01-31 | local rebuild |
| html | ae5c18f | Donghe-Zhu | 2021-01-31 | Build site. |
| Rmd | 7385f2e | Donghe-Zhu | 2021-01-31 | local rebuild |
| html | b50fe52 | Donghe-Zhu | 2021-01-31 | Build site. |
| Rmd | a543fb2 | Donghe-Zhu | 2021-01-31 | local rebuild |
| Rmd | ac99ae5 | jens-daniel-mueller | 2021-01-29 | code review |
| html | ac99ae5 | jens-daniel-mueller | 2021-01-29 | code review |
| Rmd | 74d4c5f | Donghe-Zhu | 2021-01-29 | 1 |
| html | b5bdcaf | Donghe-Zhu | 2021-01-29 | Build site. |
| Rmd | b234505 | Donghe-Zhu | 2021-01-29 | MLR approach across all depth |
| html | 442010d | Donghe-Zhu | 2021-01-29 | Build site. |
| Rmd | e67e7dd | Donghe-Zhu | 2021-01-29 | surface equilibrium approach across all latitudes irrespective of gamma |
| Rmd | 8d1f5b5 | Donghe-Zhu | 2021-01-29 | para |
| html | 372adf5 | Donghe-Zhu | 2021-01-29 | Build site. |
| Rmd | 016597a | Donghe-Zhu | 2021-01-29 | local rebuild after revision |
| html | af8788e | Donghe-Zhu | 2021-01-29 | Build site. |
| Rmd | f5886d8 | Donghe-Zhu | 2021-01-29 | no aou |
| html | 21c91c9 | Donghe-Zhu | 2021-01-29 | Build site. |
| Rmd | 81cae7e | Donghe-Zhu | 2021-01-29 | no p_star |
| html | eded038 | Donghe-Zhu | 2021-01-29 | Build site. |
| Rmd | e943c60 | Donghe-Zhu | 2021-01-29 | no nitrate |
| html | 541d4dd | Donghe-Zhu | 2021-01-29 | Build site. |
| Rmd | 4fc08bc | Donghe-Zhu | 2021-01-28 | no phosphate |
| html | 6a75576 | Donghe-Zhu | 2021-01-28 | Build site. |
| Rmd | 3e2209f | Donghe-Zhu | 2021-01-28 | no silicate |
| html | 16fba40 | Donghe-Zhu | 2021-01-28 | Build site. |
| Rmd | ec42957 | Donghe-Zhu | 2021-01-28 | local rebuild |
| Rmd | 4584be9 | Donghe-Zhu | 2021-01-28 | latest |
| html | 12bc567 | Donghe-Zhu | 2021-01-27 | Build site. |
| Rmd | 9655866 | Donghe-Zhu | 2021-01-27 | SO with lat random |
| html | ceed31b | Donghe-Zhu | 2021-01-27 | Build site. |
| Rmd | 0098207 | Donghe-Zhu | 2021-01-27 | SO with grid random |
| html | 342402d | Donghe-Zhu | 2021-01-27 | Build site. |
| Rmd | 946d676 | Donghe-Zhu | 2021-01-27 | local rebuild after revision |
| html | 5bad5c2 | Donghe-Zhu | 2021-01-27 | Build site. |
| Rmd | c2c9529 | Donghe-Zhu | 2021-01-27 | random subsetting based on lat |
| html | 61efb56 | Donghe-Zhu | 2021-01-25 | Build site. |
| Rmd | 1f42a92 | Donghe-Zhu | 2021-01-25 | 2 x slabs |
| html | 48f638e | Donghe-Zhu | 2021-01-25 | Build site. |
| Rmd | 17a7d1a | Donghe-Zhu | 2021-01-25 | MLR = SO |
| html | c1cec47 | Donghe-Zhu | 2021-01-25 | Build site. |
| Rmd | 560dcf7 | Donghe-Zhu | 2021-01-25 | no temp |
| html | 05ffb0c | Donghe-Zhu | 2021-01-25 | Build site. |
| Rmd | bc7b183 | Donghe-Zhu | 2021-01-25 | no sal |
| html | 8b97165 | Donghe-Zhu | 2021-01-25 | Build site. |
| Rmd | c41c01f | Donghe-Zhu | 2021-01-25 | OXYGEN REPLACE AOU |
| html | c569946 | Donghe-Zhu | 2021-01-24 | Build site. |
| Rmd | 846bfc0 | Donghe-Zhu | 2021-01-24 | no nitrate |
| html | a2f0d56 | Donghe-Zhu | 2021-01-23 | Build site. |
| Rmd | 0819197 | Donghe-Zhu | 2021-01-23 | local rebuild after revision |
| html | 28509fc | Donghe-Zhu | 2021-01-23 | Build site. |
| Rmd | 550f399 | Donghe-Zhu | 2021-01-23 | local rebuild after revision |
| html | 4c28e4a | Donghe-Zhu | 2021-01-22 | Build site. |
| Rmd | a703e37 | Donghe-Zhu | 2021-01-22 | local rebuild after revision |
| html | 24cc264 | jens-daniel-mueller | 2021-01-22 | cleaned /docs before creating copies |
| html | 88eb28f | Donghe-Zhu | 2021-01-21 | Build site. |
| Rmd | 14827d0 | Donghe-Zhu | 2021-01-21 | generate diagnostic plots |
| html | 2679490 | Donghe-Zhu | 2021-01-21 | Build site. |
| html | 7891955 | Donghe-Zhu | 2021-01-21 | Build site. |
| Rmd | 13c3031 | Donghe-Zhu | 2021-01-21 | Test with nitrate replace oxygen as predictor, atmospheric equilibrium and plot set to n |
| html | d4cf1cb | Donghe-Zhu | 2021-01-21 | Build site. |
| Rmd | 167eeec | Donghe-Zhu | 2021-01-21 | surface DIC calculation with atmospheric equilibrium option |
| html | 1f3e5b6 | jens-daniel-mueller | 2021-01-20 | Build site. |
| Rmd | 30afcd9 | jens-daniel-mueller | 2021-01-20 | local rebuild after revision |
| Rmd | d76b436 | Donghe-Zhu | 2021-01-19 | model quality check |
| html | 0e7bdf1 | jens-daniel-mueller | 2021-01-15 | cleaning template repository |
| html | 73cbef3 | jens-daniel-mueller | 2021-01-15 | Build site. |
| html | 4571843 | jens-daniel-mueller | 2021-01-14 | revision and html deleted for template copying |
| html | 23151cd | jens-daniel-mueller | 2021-01-14 | Build site. |
| html | b3564aa | jens-daniel-mueller | 2021-01-14 | Build site. |
| Rmd | 88db051 | jens-daniel-mueller | 2021-01-14 | local rebuild after revision |
| html | 8d032c3 | jens-daniel-mueller | 2021-01-14 | Build site. |
| Rmd | 8931f13 | Donghe-Zhu | 2021-01-13 | rebuild web |
| html | 022871c | Donghe-Zhu | 2021-01-13 | Build site. |
| Rmd | d44f36f | Donghe-Zhu | 2021-01-13 | reorder analysis final |
| html | 17dee1d | jens-daniel-mueller | 2021-01-13 | Build site. |
| html | a076226 | Donghe-Zhu | 2021-01-11 | Build site. |
| Rmd | 52eff18 | Donghe-Zhu | 2021-01-09 | Implemet model_run and subsetting |
| html | 7cdea0c | jens-daniel-mueller | 2021-01-06 | Build site. |
| html | fa85b93 | jens-daniel-mueller | 2021-01-06 | Build site. |
| html | e5cb81a | Donghe-Zhu | 2021-01-05 | Build site. |
| Rmd | 608cc45 | Donghe-Zhu | 2021-01-05 | modification of analysis |
| html | a499f10 | Donghe-Zhu | 2021-01-05 | Build site. |
| Rmd | 715bdb4 | Donghe-Zhu | 2021-01-02 | model modification |
| html | fb8a752 | Donghe-Zhu | 2020-12-23 | Build site. |
| html | 8fae0b2 | Donghe-Zhu | 2020-12-21 | Build site. |
| html | c8b76b3 | jens-daniel-mueller | 2020-12-19 | Build site. |
| Rmd | b5fedce | jens-daniel-mueller | 2020-12-19 | first build after creating model template |
| Rmd | 8e8abf5 | Jens Müller | 2020-12-18 | Initial commit |
The following local parametrisations (i.e. relevant for this sensitivity run) were defined to run the analysis:
# neutral density thresholds to cut the Atlantic ocean into slabs
slabs_Atl <-
c(
-Inf,
26.00,
26.50,
26.75,
27.00,
27.25,
27.50,
27.75,
27.85,
27.95,
28.05,
28.10,
28.15,
28.20,
Inf
)
# neutral density thresholds to cut the Indo-Pacific ocean into slabs [increase 28.20, 28.30]
slabs_Ind_Pac <-
c(-Inf,
26.00,
26.50,
26.75,
27.00,
27.25,
27.50,
27.75,
27.85,
27.95,
28.05,
28.10,
28.20,
28.30,
Inf)
# Predictors for MLR model
MLR_predictors <- c(
"sal",
"temp",
# "oxygen",
"aou",
"nitrate",
"silicate",
# "silicate_star",
"phosphate",
"phosphate_star")
params_local <-
lst(
# the GOBM used for subsetting, currently with options of CESM ("") or NorESM ("NorESM/") or FESOM_REcoM_LR ("FESOM_REcoM_LR/")
GOBM = "",
# model climate forcing with options of variable ("AD") or constant ("CB")
model_runs = "CB",
# model subsetting with options of "GLODAP" or "random"
subsetting = "GLODAP",
# random subsetting with options of "grid" or "lat"
random = "lat",
# ID of current sensitivity run
Version_ID = "v_XXX",
# f flags accepted for GLODAP data
flag_f = c(2, 0),
# qc flags accepted for GLODAP data
flag_qc = c(1, 0),
# Should A16 cruise from 2013/14 be included in middle era (y/n)
A16_GO_SHIP = "n",
# Shallowest depth for data to be included in MLR fitting
depth_min = 150,
# Shallowest water depth for data to be included in MLR fitting
bottomdepth_min = 0,
# Lowest neutral density to map Cant with eMLR approach (in surface layer?)
gamma_min = 26,
# break years for eras, numbers indicate the upper end of the respective era
era_breaks_GLODAP_start = c(1982, 2000, 2010),
era_breaks_GLODAP_end = c(1999, 2009, 2019),
era_breaks_random_start = c(1982, 2000, 2010),
era_breaks_random_end = c(1999, 2009, 2019),
# era_breaks_GLODAP = c(1981, 1999, 2009, Inf),
# era_breaks_random = c(1981, 1999, 2009, Inf),
# whether use median year as the tref
median_tref = "y",
# ID for basins for MLR fits: 2, 5, SO, AIP
MLR_basins = "2",
# Select the target variable for MLR, either "tco2", "cstar" or "cstar_tref"
MLR_target = "cstar_tref",
# see above
MLR_predictors = MLR_predictors,
# Maximum number of MLR predictors
MLR_predictors_max = 5,
# Minimum number of MLR predictors
MLR_predictors_min = 2,
# Total number of MLR fits taken into account
MLR_number = 10,
# Fitted model type rlm or lm
MLR_type = "lm",
# Criterion to select best MLR fits, either "rmse" or "aic" or "rank"
MLR_criterion = "rmse",
# VIF threshold (set vif = 1000 to apply slightly vif filter)
vif_max = 1000,
# see above
slabs_Atl = slabs_Atl,
# see above
slabs_Ind_Pac = slabs_Ind_Pac,
# Stoichiometric ratio of C to P
rCP = 117,
# Stoichiometric ratio of N to P
rNP = 16,
# Stoichiometric ratio of P to O (PO4* calculation)
rPO = 170,
# Offset P to O (PO4* calculation)
rPO_offset = 1.95,
# surface DIC calculation with options of "revelle factor" or "atmospheric equilibrium" or "atmospheric pCO2 increase"
surface_DIC_calculation = "revelle factor",
# Preindustrial atmospheric pCO2
preind_atm_pCO2 = 280,
# generate a high number of diagnostic plots while running the analysis (y/n)
plot_all_figures = "n"
)Parameterization criteria are locally stored and used throughout this sensitivty case.
params_local %>%
write_rds(here::here("data/auxillary",
"params_local.rds"))Folders for each new sensitivity run are automatically created.
sessionInfo()R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.2
Matrix products: default
BLAS: /usr/local/R-4.0.3/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.0.3/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] forcats_0.5.0 stringr_1.4.0 dplyr_1.0.5 purrr_0.3.4
[5] readr_1.4.0 tidyr_1.1.2 tibble_3.0.4 ggplot2_3.3.3
[9] tidyverse_1.3.0 workflowr_1.6.2
loaded via a namespace (and not attached):
[1] tidyselect_1.1.0 xfun_0.20 haven_2.3.1 colorspace_2.0-0
[5] vctrs_0.3.6 generics_0.1.0 htmltools_0.5.0 yaml_2.2.1
[9] blob_1.2.1 rlang_0.4.10 later_1.1.0.1 pillar_1.4.7
[13] withr_2.3.0 glue_1.4.2 DBI_1.1.0 dbplyr_1.4.4
[17] readxl_1.3.1 modelr_0.1.8 lifecycle_1.0.0 cellranger_1.1.0
[21] munsell_0.5.0 gtable_0.3.0 rvest_0.3.6 evaluate_0.14
[25] knitr_1.30 httpuv_1.5.4 fansi_0.4.1 broom_0.7.5
[29] Rcpp_1.0.5 promises_1.1.1 backports_1.1.10 scales_1.1.1
[33] jsonlite_1.7.2 fs_1.5.0 hms_0.5.3 digest_0.6.27
[37] stringi_1.5.3 rprojroot_2.0.2 grid_4.0.3 here_1.0.1
[41] cli_2.2.0 tools_4.0.3 magrittr_2.0.1 crayon_1.3.4
[45] whisker_0.4 pkgconfig_2.0.3 ellipsis_0.3.1 xml2_1.3.2
[49] reprex_0.3.0 lubridate_1.7.9 assertthat_0.2.1 rmarkdown_2.5
[53] httr_1.4.2 rstudioapi_0.13 R6_2.5.0 git2r_0.27.1
[57] compiler_4.0.3