GLODAPv2_2020 subsetting

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Last updated: 2021-07-30

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Knit directory: emlr_mod_v_XXX/

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Repository version: a62f33f

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    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/highlightjs-9.12.0/textmate.css
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jquery-1.11.3/jquery.min.js
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/README
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/images/ui-icons_444444_256x240.png
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/images/ui-icons_555555_256x240.png
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/images/ui-icons_777620_256x240.png
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/images/ui-icons_777777_256x240.png
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/images/ui-icons_cc0000_256x240.png
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/images/ui-icons_ffffff_256x240.png
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/index.html
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/jquery-ui.css
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/jquery-ui.js
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/jquery-ui.min.css
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/jquery-ui.min.js
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/jquery-ui.structure.css
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/jquery-ui.structure.min.css
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/jquery-ui.theme.css
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/jqueryui-1.11.4/jquery-ui.theme.min.css
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/kePrint-0.0.1/kePrint.js
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/lightable-0.0.1/lightable.css
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/navigation-1.1/codefolding.js
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/navigation-1.1/sourceembed.js
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/navigation-1.1/tabsets.js
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/tocify-1.9.1/jquery.tocify.css
    Deleted:    docs_RV_2021_2R_mon_standard/site_libs/tocify-1.9.1/jquery.tocify.js

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

---

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/eMLR_GLODAPv2_2020_subsetting.Rmd) and HTML (docs/eMLR_GLODAPv2_2020_subsetting.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
html	a3006cd	Donghe-Zhu	2021-07-30	Build site.
html	a55ffdc	Donghe-Zhu	2021-07-30	Build site.
html	d5e4458	Donghe-Zhu	2021-07-30	Build site.
html	10a97ef	Donghe-Zhu	2021-07-30	Build site.
html	1c501fd	Donghe-Zhu	2021-07-30	Build site.
html	68bce3f	Donghe-Zhu	2021-07-30	Build site.
html	400c457	Donghe-Zhu	2021-07-29	Build site.
html	3ba7852	Donghe-Zhu	2021-07-29	Build site.
html	422d5fd	Donghe-Zhu	2021-07-29	Build site.
html	ec68363	Donghe-Zhu	2021-07-28	Build site.
html	d3018f6	Donghe-Zhu	2021-07-28	Build site.
Rmd	480acc4	Donghe-Zhu	2021-07-28	local rebuild
html	b8ba2c4	Donghe-Zhu	2021-07-28	Build site.
html	a4ddd84	Donghe-Zhu	2021-07-27	Build site.
Rmd	20ba609	Donghe-Zhu	2021-07-27	local rebuild
html	7ef49ab	Donghe-Zhu	2021-07-27	Build site.
html	da818c0	Donghe-Zhu	2021-07-27	Build site.
html	8623898	Donghe-Zhu	2021-07-27	Build site.
html	f84b77c	Donghe-Zhu	2021-07-27	Build site.
html	70ad9a5	Donghe-Zhu	2021-07-27	Build site.
html	0d0b48d	Donghe-Zhu	2021-07-27	Build site.
Rmd	376ec48	Donghe-Zhu	2021-07-27	local rebuild
html	d0d97c6	Donghe-Zhu	2021-07-27	Build site.
Rmd	257f937	Donghe-Zhu	2021-07-27	local rebuild
html	829510d	Donghe-Zhu	2021-07-27	Build site.
html	780627d	Donghe-Zhu	2021-07-27	Build site.
html	e9838c9	Donghe-Zhu	2021-07-27	Build site.
html	2777f33	Donghe-Zhu	2021-07-27	Build site.
html	d19760f	Donghe-Zhu	2021-07-27	Build site.
html	cac5680	Donghe-Zhu	2021-07-23	Build site.
html	7bb279a	Donghe-Zhu	2021-07-23	Build site.
html	d52eac4	Donghe-Zhu	2021-07-23	Build site.
html	dcf34b1	Donghe-Zhu	2021-07-23	Build site.
html	419cb72	Donghe-Zhu	2021-07-22	Build site.
html	9447d10	Donghe-Zhu	2021-07-22	Build site.
html	639c9a0	Donghe-Zhu	2021-07-22	Build site.
html	25bb96f	Donghe-Zhu	2021-07-22	Build site.
html	cdc98a3	Donghe-Zhu	2021-07-22	Build site.
html	e4805a1	Donghe-Zhu	2021-07-22	Build site.
Rmd	573cc5d	Donghe-Zhu	2021-07-22	local rebuild
html	7957fd1	Donghe-Zhu	2021-07-21	Build site.
html	b94be4e	Donghe-Zhu	2021-07-21	Build site.
html	9950e70	Donghe-Zhu	2021-07-21	Build site.
html	698b6f0	Donghe-Zhu	2021-07-20	Build site.
html	d84a1cb	Donghe-Zhu	2021-07-20	Build site.
Rmd	ec15bf2	Donghe-Zhu	2021-07-20	local rebuild
html	4dce223	Donghe-Zhu	2021-07-20	Build site.
html	6f28c0c	Donghe-Zhu	2021-07-20	Build site.
html	db1e7b7	Donghe-Zhu	2021-07-19	Build site.
Rmd	38a8d51	Donghe-Zhu	2021-07-19	local rebuild
html	ff0575d	Donghe-Zhu	2021-07-19	Build site.
html	5d60eac	Donghe-Zhu	2021-07-19	Build site.
html	57d0420	Donghe-Zhu	2021-07-16	Build site.
html	c1be8f6	Donghe-Zhu	2021-07-16	1
html	26a7c15	Donghe-Zhu	2021-07-16	Build site.
Rmd	35e2f22	Donghe-Zhu	2021-07-16	local rebuild
html	046902b	Donghe-Zhu	2021-07-16	Build site.
Rmd	94e8460	Donghe-Zhu	2021-07-15	local rebuild
html	3d4ac14	Donghe-Zhu	2021-07-15	Build site.
html	be6fff9	Donghe-Zhu	2021-07-15	Build site.
Rmd	b8bd687	Donghe-Zhu	2021-07-15	local rebuild
html	b473472	Donghe-Zhu	2021-07-15	Build site.
html	363270a	Donghe-Zhu	2021-07-15	Build site.
Rmd	bb00951	Donghe-Zhu	2021-07-15	local rebuild
html	8b75a03	Donghe-Zhu	2021-07-15	Build site.
html	294f8ca	Donghe-Zhu	2021-07-15	Build site.
Rmd	663457c	Donghe-Zhu	2021-07-15	local rebuild
html	a01e135	Donghe-Zhu	2021-07-07	Build site.
html	bc83ef2	Donghe-Zhu	2021-07-07	Build site.
Rmd	0a4ac57	Donghe-Zhu	2021-07-07	local rebuild
html	75e7b07	Donghe-Zhu	2021-07-06	Build site.
html	697aa6d	Donghe-Zhu	2021-07-06	Build site.
html	d52e2de	Donghe-Zhu	2021-07-06	Build site.
html	f2bde6b	Donghe-Zhu	2021-07-06	Build site.
html	1133f28	Donghe-Zhu	2021-07-06	Build site.
html	fe3a1cd	Donghe-Zhu	2021-07-06	Build site.
html	d9cdf15	Donghe-Zhu	2021-07-06	Build site.
html	ee4cd2d	Donghe-Zhu	2021-07-06	Build site.
html	93821c1	Donghe-Zhu	2021-07-05	Build site.
html	d44db8e	Donghe-Zhu	2021-07-05	Build site.
html	20b3436	Donghe-Zhu	2021-07-05	Build site.
html	d982ea5	Donghe-Zhu	2021-07-05	Build site.
html	7397e53	Donghe-Zhu	2021-07-05	Build site.
html	f2e4805	Donghe-Zhu	2021-07-05	Build site.
Rmd	2f9b371	Donghe-Zhu	2021-07-05	local rebuild
html	e2d011a	Donghe-Zhu	2021-07-05	Build site.
html	85e0349	Donghe-Zhu	2021-07-05	Build site.
html	6ee0146	Donghe-Zhu	2021-07-05	Build site.
html	a482a6b	Donghe-Zhu	2021-07-05	Build site.
html	f59f1b3	Donghe-Zhu	2021-07-05	Build site.
html	116bcab	Donghe-Zhu	2021-07-04	Build site.
html	cb1c8dc	Donghe-Zhu	2021-07-04	Build site.
html	c9bdd83	Donghe-Zhu	2021-07-04	Build site.
Rmd	5693d9f	Donghe-Zhu	2021-07-04	local rebuild
html	1920ad9	Donghe-Zhu	2021-07-04	Build site.
Rmd	c62d3c0	Donghe-Zhu	2021-07-04	local rebuild
html	0b02791	Donghe-Zhu	2021-06-25	change random subset files
html	caf62d8	Donghe-Zhu	2021-06-25	Build site.
html	90a9da5	Donghe-Zhu	2021-06-25	Build site.
html	bb413c8	Donghe-Zhu	2021-06-25	Build site.
Rmd	62218ac	Donghe-Zhu	2021-06-24	local rebuild
html	e7a5266	Donghe-Zhu	2021-06-24	Build site.
html	7c57720	Donghe-Zhu	2021-06-24	Build site.
html	b5b95a9	Donghe-Zhu	2021-06-24	Build site.
Rmd	690fdc5	Donghe-Zhu	2021-06-24	local rebuild
html	472aad4	Donghe-Zhu	2021-06-24	Build site.
Rmd	76ce72b	Donghe-Zhu	2021-06-24	local rebuild
html	d517836	Donghe-Zhu	2021-06-24	0
html	9221bfe	Donghe-Zhu	2021-06-24	Build site.
html	bff5fbf	Donghe-Zhu	2021-06-23	Build site.
html	256a616	Donghe-Zhu	2021-06-23	Build site.
html	00072e2	Donghe-Zhu	2021-06-23	Build site.
Rmd	71d2509	Donghe-Zhu	2021-06-23	local rebuild
html	61cae2b	Donghe-Zhu	2021-06-20	1
html	d20c383	Donghe-Zhu	2021-06-18	Build site.
html	b0874a2	Donghe-Zhu	2021-06-17	Build site.
Rmd	247820f	Donghe-Zhu	2021-06-17	local rebuild
html	72c2f2e	Donghe-Zhu	2021-06-15	Build site.
Rmd	31757f3	Donghe-Zhu	2021-06-15	local rebuild
html	d97dcb6	Donghe-Zhu	2021-06-08	1
html	25dda1d	Donghe-Zhu	2021-06-08	Build site.
html	bd2bcc3	Donghe-Zhu	2021-06-08	Build site.
html	e9b27d7	Donghe-Zhu	2021-06-07	Build site.
Rmd	8aabff4	Donghe-Zhu	2021-06-07	local rebuild
html	7ae0d4b	Donghe-Zhu	2021-06-07	Build site.
html	325391f	Donghe-Zhu	2021-06-07	Build site.
html	ed89970	Donghe-Zhu	2021-06-07	Build site.
html	df37958	Donghe-Zhu	2021-06-07	1
html	812bf63	Donghe-Zhu	2021-06-06	Build site.
Rmd	8259730	Donghe-Zhu	2021-06-06	local rebuild
html	65c89c8	Donghe-Zhu	2021-06-06	Build site.
Rmd	8414e7c	Donghe-Zhu	2021-06-06	local rebuild
html	9baa3b2	Donghe-Zhu	2021-06-06	debug
html	b7d99cf	Donghe-Zhu	2021-06-06	Build site.
html	5d8fa90	Donghe-Zhu	2021-06-06	Build site.
html	dbe2a95	Donghe-Zhu	2021-05-28	Build site.
html	d50b039	Donghe-Zhu	2021-05-28	Build site.
html	441ebe5	Donghe-Zhu	2021-05-28	Build site.
html	6262ad3	Donghe-Zhu	2021-05-28	Build site.
html	a61aa77	Donghe-Zhu	2021-05-28	Build site.
html	b8dbce4	Donghe-Zhu	2021-05-28	Build site.
html	94a833e	Donghe-Zhu	2021-05-27	Build site.
html	5e0bd64	Donghe-Zhu	2021-05-27	Build site.
html	af1eadd	Donghe-Zhu	2021-05-27	Build site.
html	9179bfe	Donghe-Zhu	2021-05-27	Build site.
html	28cbe5e	Donghe-Zhu	2021-05-27	Build site.
html	a618f02	Donghe-Zhu	2021-05-27	Build site.
html	4623e38	Donghe-Zhu	2021-05-27	Build site.
html	b81bb49	Donghe-Zhu	2021-05-27	Build site.
html	951e188	Donghe-Zhu	2021-05-27	Build site.
html	e377833	Donghe-Zhu	2021-05-26	Build site.
Rmd	896faa0	Donghe-Zhu	2021-05-18	final
html	2705a04	Donghe-Zhu	2021-03-28	Build site.
html	cd5f759	Donghe-Zhu	2021-03-28	Build site.
html	75dda4d	Donghe-Zhu	2021-03-27	Build site.
html	0b19f6e	Donghe-Zhu	2021-03-27	Build site.
html	e2704ca	Donghe-Zhu	2021-03-27	Build site.
html	3061a0b	Donghe-Zhu	2021-03-27	Build site.
html	b883157	Donghe-Zhu	2021-03-27	Build site.
html	0c20513	Donghe-Zhu	2021-03-26	Build site.
html	d19654d	Donghe-Zhu	2021-03-26	Build site.
html	6c53dbf	Donghe-Zhu	2021-03-25	Build site.
html	1914a11	Donghe-Zhu	2021-03-24	Build site.
html	8be810e	Donghe-Zhu	2021-03-23	Build site.
html	bf19764	Donghe-Zhu	2021-03-22	Build site.
html	3ec9d3d	Donghe-Zhu	2021-03-22	Build site.
html	134ace1	Donghe-Zhu	2021-03-22	Build site.
html	f6d70a4	Donghe-Zhu	2021-03-22	Build site.
html	183443b	Donghe-Zhu	2021-03-21	Build site.
html	2e6976b	Donghe-Zhu	2021-03-21	Build site.
html	51a42bd	Donghe-Zhu	2021-03-16	Build site.
html	f745381	Donghe-Zhu	2021-03-16	Build site.
html	aecbf75	Donghe-Zhu	2021-03-14	Build site.
html	1b2a0c2	Donghe-Zhu	2021-03-14	Build site.
html	6733e48	Donghe-Zhu	2021-03-12	Build site.
html	ba71e6a	Donghe-Zhu	2021-03-12	Build site.
html	9dbf5bd	Donghe-Zhu	2021-03-11	Build site.
html	a49df30	Donghe-Zhu	2021-03-11	Build site.
html	b3348a5	Donghe-Zhu	2021-03-11	Build site.
html	1c24ff7	Donghe-Zhu	2021-03-10	Build site.
html	94ce5a8	Donghe-Zhu	2021-03-10	Build site.
html	db33928	Donghe-Zhu	2021-03-10	Build site.
html	3d1f470	Donghe-Zhu	2021-03-10	Build site.
html	9b7bc66	Donghe-Zhu	2021-03-10	Build site.
html	4168b43	Donghe-Zhu	2021-03-10	Build site.
html	5365f80	Donghe-Zhu	2021-03-10	Build site.
html	2b6c392	Donghe-Zhu	2021-03-10	Build site.
html	9f58753	Donghe-Zhu	2021-03-10	Build site.
html	f2a7146	Donghe-Zhu	2021-03-10	Build site.
html	fd528ed	Donghe-Zhu	2021-03-10	Build site.
html	9d5a62c	Donghe-Zhu	2021-03-10	Build site.
html	5d1e70b	Donghe-Zhu	2021-03-10	Build site.
html	2093979	Donghe-Zhu	2021-03-10	Build site.
html	b865899	Donghe-Zhu	2021-03-10	Build site.
html	cc2a956	Donghe-Zhu	2021-03-10	Build site.
html	60689fb	Donghe-Zhu	2021-03-10	Build site.
html	9230b52	Donghe-Zhu	2021-03-10	Build site.
html	dba33c8	Donghe-Zhu	2021-03-09	Build site.
html	17f1c4a	Donghe-Zhu	2021-03-09	Build site.
html	c024d1a	Donghe-Zhu	2021-03-09	Build site.
html	02f7242	Donghe-Zhu	2021-03-09	Build site.
html	6f50bc6	Donghe-Zhu	2021-03-09	Build site.
html	1691156	Donghe-Zhu	2021-03-08	Build site.
html	c0ceaf8	Donghe-Zhu	2021-03-08	Build site.
html	058e0a1	Donghe-Zhu	2021-03-08	Build site.
html	112dea0	Donghe-Zhu	2021-03-08	Build site.
html	1843412	Donghe-Zhu	2021-03-08	Build site.
html	65b0cef	Donghe-Zhu	2021-03-07	Build site.
html	4083a6c	Donghe-Zhu	2021-03-07	Build site.
html	3fbbfa4	Donghe-Zhu	2021-03-07	Build site.
html	627c8fb	Donghe-Zhu	2021-03-07	Build site.
html	3607f4d	Donghe-Zhu	2021-03-07	Build site.
html	9ef3222	Donghe-Zhu	2021-03-05	Build site.
html	8c1e978	Donghe-Zhu	2021-03-05	Build site.
html	865f68c	Donghe-Zhu	2021-03-05	Build site.
html	ee69bc1	Donghe-Zhu	2021-03-05	Build site.
html	a79291f	Donghe-Zhu	2021-03-05	Build site.
html	e8c6f30	Donghe-Zhu	2021-03-04	Build site.
html	59288fe	Donghe-Zhu	2021-03-04	Build site.
html	731abc8	Donghe-Zhu	2021-03-04	Build site.
html	e2a5a33	Donghe-Zhu	2021-03-04	Build site.
html	c7892c1	Donghe-Zhu	2021-03-04	Build site.
html	924430b	Donghe-Zhu	2021-03-03	Build site.
html	0d0bca1	Donghe-Zhu	2021-03-03	Build site.
html	cb63c16	Donghe-Zhu	2021-03-03	Build site.
html	ffda45a	Donghe-Zhu	2021-03-03	Build site.
html	691ba81	Donghe-Zhu	2021-03-03	Build site.
html	c5e45a2	Donghe-Zhu	2021-03-03	Build site.
html	89c3e58	Donghe-Zhu	2021-03-03	Build site.
html	c407a50	Donghe-Zhu	2021-03-03	Build site.
html	c911669	Donghe-Zhu	2021-03-03	Build site.
html	b71c719	Donghe-Zhu	2021-03-01	Build site.
html	13666ca	Donghe-Zhu	2021-03-01	Build site.
html	c6e60fe	Donghe-Zhu	2021-03-01	Build site.
html	7a388f7	Donghe-Zhu	2021-03-01	Build site.
html	799e913	Donghe-Zhu	2021-03-01	Build site.
html	66ff99f	Donghe-Zhu	2021-03-01	Build site.
html	ac9bb7a	Donghe-Zhu	2021-02-28	Build site.
html	efdc047	Donghe-Zhu	2021-02-28	Build site.
html	e9a7418	Donghe-Zhu	2021-02-28	Build site.
html	e152917	Donghe-Zhu	2021-02-28	Build site.
html	feb991c	Donghe-Zhu	2021-02-27	Build site.
html	287123c	Donghe-Zhu	2021-02-27	Build site.
html	54d5b5b	Donghe-Zhu	2021-02-27	Build site.
html	330f064	Donghe-Zhu	2021-02-27	Build site.
html	adbc9bc	Donghe-Zhu	2021-02-27	Build site.
html	5937141	Donghe-Zhu	2021-02-27	Build site.
html	4414bbf	Donghe-Zhu	2021-02-27	Build site.
html	a265efb	Donghe-Zhu	2021-02-27	Build site.
html	19edd1e	Donghe-Zhu	2021-02-27	Build site.
html	f20483f	Donghe-Zhu	2021-02-26	Build site.
html	6a2c7b3	Donghe-Zhu	2021-02-25	Build site.
html	02b976d	Donghe-Zhu	2021-02-24	Build site.
html	354c224	Donghe-Zhu	2021-02-24	Build site.
html	1a0a88a	Donghe-Zhu	2021-02-24	Build site.
html	57f701e	Donghe-Zhu	2021-02-24	Build site.
html	06f3149	Donghe-Zhu	2021-02-16	Build site.
html	401eab3	Donghe-Zhu	2021-02-15	Build site.
html	e3bba84	Donghe-Zhu	2021-02-15	Build site.
html	5dce4b1	Donghe-Zhu	2021-02-15	Build site.
html	4469a0c	Donghe-Zhu	2021-02-13	Build site.
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html	ac99ae5	jens-daniel-mueller	2021-01-29	code review
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html	5bad5c2	Donghe-Zhu	2021-01-27	Build site.
Rmd	c2c9529	Donghe-Zhu	2021-01-27	random subsetting based on lat
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Rmd	ac37e34	Donghe-Zhu	2021-01-11	add climate and subsetting condition
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Rmd	b5fedce	jens-daniel-mueller	2020-12-19	first build after creating model template
Rmd	8e8abf5	Jens Müller	2020-12-18	Initial commit

---

1 Read files

Main data source for this project is the synthetic cmorized model subset based on preprocessed version of the GLODAPv2.2020_Merged_Master_File.csv downloaded from glodap.info in June 2020.

CAVEAT: This file still contains neutral densities gamma calculated with a preliminary method. However, this is consistent with the way gamma is currently calculated in this script and should therefore be maintained until changed on all levels.

if (params_local$model_runs == "AD") {
  if (params_local$nan_fill == "no") {
    GLODAP <-
      read_csv(
        paste(
          path_preprocessing,
          "GLODAPv2.2021_preprocessed_model_runA_final_ann.csv",
          sep = ""
        )
      )
  }
  if (params_local$nan_fill == "yes") {
    GLODAP <-
      read_csv(
        paste(
          path_preprocessing,
          "GLODAPv2.2021_preprocessed_model_runA_final_NA_filled_ann.csv",
          sep = ""
        )
      )
  }
  
  if (params_local$random == "grid") {
    random <- read_csv(
      paste(
        path_preprocessing,
        "GLODAPv2.2021_preprocessed_model_runA_random_subset_grid_ann.csv",
        sep = ""
      )
    )
  }
  
  if (params_local$random == "lat") {
    random <- read_csv(
      paste(
        path_preprocessing,
        "GLODAPv2.2021_preprocessed_model_runA_random_subset_lat_ann.csv",
        sep = ""
      )
    )
  }
  
}

if (params_local$model_runs == "CB") {
  GLODAP <-
    read_csv(
      paste(
        path_preprocessing,
        "GLODAPv2.2021_preprocessed_model_runC_final_ann.csv",
        sep = ""
      )
    )
  if (params_local$random == "grid") {
    random <- read_csv(
      paste(
        path_preprocessing,
        "GLODAPv2.2021_preprocessed_model_runC_random_subset_grid_ann.csv",
        sep = ""
      )
    )
  }
  
  if (params_local$random == "lat") {
    random <- read_csv(
      paste(
        path_preprocessing,
        "GLODAPv2.2021_preprocessed_model_runC_random_subset_lat_ann.csv",
        sep = ""
      )
    )
  }
  
}

2 Data preparation

2.1 Reference eras

Samples were assigned to following eras:

# create labels for era
labels_GLODAP <- bind_cols(
  start = params_local$era_breaks_GLODAP_start,
  end = params_local$era_breaks_GLODAP_end)

labels_GLODAP <- labels_GLODAP %>% 
  filter(!is.na(end)) %>% 
  mutate(end = if_else(end == Inf, max(GLODAP$year), end),
         label = paste(start, end, sep = "-")) %>% 
  select(label) %>% 
  pull()

labels_random <- bind_cols(
  start = params_local$era_breaks_random_start,
  end = params_local$era_breaks_random_end)

labels_random <- labels_random %>% 
  filter(!is.na(end)) %>% 
  mutate(end = if_else(end == Inf, max(random$year), end),
         label = paste(start, end, sep = "-")) %>% 
  select(label) %>% 
  pull()

# cut observation years into era applying the labels
GLODAP_e1 <- GLODAP %>%
  filter(year %in% c(params_local$era_breaks_GLODAP_start[1]:params_local$era_breaks_GLODAP_end[1])) %>% 
  mutate(era = labels_GLODAP[1])

GLODAP_e2 <- GLODAP %>%
  filter(year %in% c(params_local$era_breaks_GLODAP_start[2]:params_local$era_breaks_GLODAP_end[2])) %>% 
  mutate(era = labels_GLODAP[2])

GLODAP_e3 <- GLODAP %>%
  filter(year %in% c(params_local$era_breaks_GLODAP_start[3]:params_local$era_breaks_GLODAP_end[3])) %>% 
  mutate(era = labels_GLODAP[3])
  
GLODAP <- bind_rows(GLODAP_e1, GLODAP_e2, GLODAP_e3) %>%
  mutate(era = as.factor(era))

random_e1 <- random %>%
  filter(year %in% c(params_local$era_breaks_random_start[1]:params_local$era_breaks_random_end[1])) %>% 
  mutate(era = labels_random[1])

random_e2 <- random %>%
  filter(year %in% c(params_local$era_breaks_random_start[2]:params_local$era_breaks_random_end[2])) %>% 
  mutate(era = labels_random[2])

random_e3 <- random %>%
  filter(year %in% c(params_local$era_breaks_random_start[3]:params_local$era_breaks_random_end[3])) %>% 
  mutate(era = labels_random[3])
  
random <- bind_rows(random_e1, random_e2, random_e3) %>%
  mutate(era = as.factor(era))

levels(GLODAP$era)

[1] "1982-1999" "2000-2009" "2010-2019"

levels(random$era)

[1] "1982-1999" "2000-2009" "2010-2019"

rm(labels_GLODAP, labels_random)

2.2 Spatial boundaries

2.2.1 Basin mask

The basin mask from the World Ocean Atlas was used. For details consult the data base subsection for WOA18 data.

Please note that some GLODAP-based subsetting model data were outside the WOA18 basin mask (i.e. in marginal seas) and will be removed for further analysis.

# use only data inside basinmask
GLODAP <- inner_join(GLODAP, basinmask)
random <- inner_join(random, basinmask)

2.2.2 Depth

GLODAP-based subsetting model data with depth shallower than:

• minimum sampling depth: 150m

were excluded from the analysis to avoid seasonal bias.

GLODAP <- GLODAP %>% 
  filter(depth >= params_local$depth_min)

random <- random %>% 
  filter(depth >= params_local$depth_min)

2.2.3 Bottomdepth

GLODAP-based subsetting model data in an area with a:

• minimum bottom depth: 0m

were excluded from the analysis to avoid coastal impacts. Please note that minimum bottom depth criterion of 0m means that no filtering was applied here.

GLODAP <- GLODAP %>% 
  filter(bottomdepth >= params_local$bottomdepth_min)

2.3 Flags and missing data

Only rows (samples) for which all relevant parameters are available were selected, ie NA’s were removed.

According to Olsen et al (2020), flags within the merged master file identify:

• f:

  • 2: Acceptable
  • 0: Interpolated (nutrients/oxygen) or calculated (CO[2] variables)
  • 9: Data not used (so, only NA data should have this flag)

• qc:

  • 1: Adjusted or unadjusted data
  • 0: Data appear of good quality but have not been subjected to full secondary QC
  • data with poor or uncertain quality are excluded.

Following flagging criteria were taken into account:

• flag_f: 2, 0, 9
• flag_qc: 1, 0

The cleaning process was performed successively and the maps below represent the data coverage at various cleaning levels.

Summary statistics were calculated during cleaning process.

2.3.1 tco2

2.3.1.1 NA

Rows with missing tco2 in GLODAP-based subsetting model data were already removed in the preprocessing. The map below shows the coverage of preprocessed GLODAP-based subsetting model data.

GLODAP_stats <- GLODAP %>% 
  summarise(tco2_values = n())

GLODAP_obs_grid <- GLODAP %>% 
  count(lat, lon, era) %>% 
  mutate(cleaning_level = "tco2_values")

GLODAP_obs <- GLODAP %>% 
  group_by(lat, lon) %>% 
  summarise(n = n()) %>% 
  ungroup()

map +
  geom_raster(data = basinmask, aes(lon, lat, fill = basin)) +
  geom_raster(data = GLODAP_obs, aes(lon, lat)) +
  scale_fill_brewer(palette = "Dark2") +
  theme(legend.position = "top",
        legend.title = element_blank())

Past versions of WOA18_basin_mask_GLODAP-based_subsetting_model_data_map-1.png

Version	Author	Date
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
3ba7852	Donghe-Zhu	2021-07-29
ec68363	Donghe-Zhu	2021-07-28
d3018f6	Donghe-Zhu	2021-07-28
a4ddd84	Donghe-Zhu	2021-07-27
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
dcf34b1	Donghe-Zhu	2021-07-23
e4805a1	Donghe-Zhu	2021-07-22
7957fd1	Donghe-Zhu	2021-07-21
9950e70	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
ee4cd2d	Donghe-Zhu	2021-07-06
d44db8e	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
a482a6b	Donghe-Zhu	2021-07-05
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
90a9da5	Donghe-Zhu	2021-06-25
e7a5266	Donghe-Zhu	2021-06-24
7c57720	Donghe-Zhu	2021-06-24
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
256a616	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
d20c383	Donghe-Zhu	2021-06-18
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
25dda1d	Donghe-Zhu	2021-06-08
bd2bcc3	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
7ae0d4b	Donghe-Zhu	2021-06-07
325391f	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
9179bfe	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
75dda4d	Donghe-Zhu	2021-03-27
0b19f6e	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
b883157	Donghe-Zhu	2021-03-27
1914a11	Donghe-Zhu	2021-03-24
bf19764	Donghe-Zhu	2021-03-22
b3348a5	Donghe-Zhu	2021-03-11
5365f80	Donghe-Zhu	2021-03-10
cc2a956	Donghe-Zhu	2021-03-10
02f7242	Donghe-Zhu	2021-03-09
1691156	Donghe-Zhu	2021-03-08
c0ceaf8	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
627c8fb	Donghe-Zhu	2021-03-07
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
19edd1e	Donghe-Zhu	2021-02-27
f20483f	Donghe-Zhu	2021-02-26
57f701e	Donghe-Zhu	2021-02-24
06f3149	Donghe-Zhu	2021-02-16
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
1fad5f1	Donghe-Zhu	2021-02-07
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
59e006e	Donghe-Zhu	2021-01-31
a1c8f87	Donghe-Zhu	2021-01-31
ae5c18f	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
ceed31b	Donghe-Zhu	2021-01-27
61efb56	Donghe-Zhu	2021-01-25
48f638e	Donghe-Zhu	2021-01-25
a2f0d56	Donghe-Zhu	2021-01-23
28509fc	Donghe-Zhu	2021-01-23
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
fb8a752	Donghe-Zhu	2020-12-23

rm(GLODAP_obs)

2.3.1.2 f flag

GLODAP_obs_grid_temp <- GLODAP %>%
  count(lat, lon, era, tco2f)

map +
  geom_raster(data = GLODAP_obs_grid_temp, aes(lon, lat, fill = n)) +
  scale_fill_viridis_c(option = "magma",
                       direction = -1,
                       trans = "log10") +
  facet_grid(era ~ tco2f) +
  theme(legend.position = "top")

Past versions of tco2_f_subset-1.png

Version	Author	Date
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
e4805a1	Donghe-Zhu	2021-07-22
d84a1cb	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
f2bde6b	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
b883157	Donghe-Zhu	2021-03-27
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

rm(GLODAP_obs_grid_temp)

GLODAP <- GLODAP %>%
  filter(tco2f %in% params_local$flag_f)

2.3.1.3 qc flag

GLODAP_obs_grid_temp <- GLODAP %>%
  count(lat, lon, era, tco2qc)

map +
  geom_raster(data = GLODAP_obs_grid_temp, aes(lon, lat, fill = n)) +
  scale_fill_viridis_c(option = "magma",
                       direction = -1,
                       trans = "log10") +
  facet_grid(era ~ tco2qc) +
  theme(legend.position = "top")

Past versions of tco2_qc_subset-1.png

Version	Author	Date
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
e4805a1	Donghe-Zhu	2021-07-22
d84a1cb	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
f2bde6b	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
b883157	Donghe-Zhu	2021-03-27
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

##

GLODAP <- GLODAP %>%
  filter(tco2qc %in% params_local$flag_qc)

GLODAP_stats_temp <- GLODAP %>%
  summarise(tco2_flag = n())

GLODAP_stats <- cbind(GLODAP_stats, GLODAP_stats_temp)
rm(GLODAP_stats_temp)

##

GLODAP_obs_grid_temp <- GLODAP %>%
  count(lat, lon, era) %>%
  mutate(cleaning_level = "tco2_flag")

GLODAP_obs_grid <-
  bind_rows(GLODAP_obs_grid, GLODAP_obs_grid_temp)

rm(GLODAP_obs_grid_temp)

2.3.2 talk

2.3.2.1 NA

GLODAP <- GLODAP %>% 
  mutate(talkna = if_else(is.na(talk), "NA", "Value"))

GLODAP_obs_grid_temp <- GLODAP %>%
  count(lat, lon, era, talkna)

map +
  geom_raster(data = GLODAP_obs_grid_temp, aes(lon, lat, fill = n)) +
  scale_fill_viridis_c(option = "magma",
                       direction = -1,
                       trans = "log10") +
  facet_grid(era ~ talkna) +
  theme(legend.position = "top")

Past versions of talk_na_subset-1.png

Version	Author	Date
a55ffdc	Donghe-Zhu	2021-07-30
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
d3018f6	Donghe-Zhu	2021-07-28
b8ba2c4	Donghe-Zhu	2021-07-28
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
cac5680	Donghe-Zhu	2021-07-23
9447d10	Donghe-Zhu	2021-07-22
cdc98a3	Donghe-Zhu	2021-07-22
e4805a1	Donghe-Zhu	2021-07-22
b94be4e	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
6f28c0c	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
f2bde6b	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
b883157	Donghe-Zhu	2021-03-27
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

GLODAP <- GLODAP %>% 
  select(-talkna) %>% 
  filter(!is.na(talk))

##

GLODAP_stats_temp <- GLODAP %>% 
  summarise(talk_values = n())

GLODAP_stats <- cbind(GLODAP_stats, GLODAP_stats_temp)
rm(GLODAP_stats_temp)

##

GLODAP_obs_grid_temp <- GLODAP %>% 
  count(lat, lon, era) %>% 
  mutate(cleaning_level = "talk_values")

GLODAP_obs_grid <-
  bind_rows(GLODAP_obs_grid, GLODAP_obs_grid_temp)

rm(GLODAP_obs_grid_temp)

2.3.2.2 f flag

GLODAP_obs_grid_temp <- GLODAP %>%
  count(lat, lon, era, talkf)

map +
  geom_raster(data = GLODAP_obs_grid_temp, aes(lon, lat, fill = n)) +
  scale_fill_viridis_c(option = "magma",
                       direction = -1,
                       trans = "log10") +
  facet_grid(era ~ talkf) +
  theme(legend.position = "top",
        legend.title = element_blank())

Past versions of talk_f_subset-1.png

Version	Author	Date
a55ffdc	Donghe-Zhu	2021-07-30
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
d3018f6	Donghe-Zhu	2021-07-28
b8ba2c4	Donghe-Zhu	2021-07-28
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
cac5680	Donghe-Zhu	2021-07-23
9447d10	Donghe-Zhu	2021-07-22
cdc98a3	Donghe-Zhu	2021-07-22
e4805a1	Donghe-Zhu	2021-07-22
b94be4e	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
6f28c0c	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
f2bde6b	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
b883157	Donghe-Zhu	2021-03-27
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

# ###

GLODAP <- GLODAP %>%
  filter(talkf %in% params_local$flag_f)

2.3.2.3 qc flag

GLODAP_obs_grid_temp <- GLODAP %>%
  count(lat, lon, era, talkqc)

map +
  geom_raster(data = GLODAP_obs_grid_temp, aes(lon, lat, fill = n)) +
  scale_fill_viridis_c(option = "magma",
                       direction = -1,
                       trans = "log10") +
  facet_grid(era ~ talkqc) +
  theme(legend.position = "top",
        legend.title = element_blank())

Past versions of talk_qc_subset-1.png

Version	Author	Date
a55ffdc	Donghe-Zhu	2021-07-30
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
d3018f6	Donghe-Zhu	2021-07-28
b8ba2c4	Donghe-Zhu	2021-07-28
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
cac5680	Donghe-Zhu	2021-07-23
9447d10	Donghe-Zhu	2021-07-22
cdc98a3	Donghe-Zhu	2021-07-22
e4805a1	Donghe-Zhu	2021-07-22
b94be4e	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
6f28c0c	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
f2bde6b	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
b883157	Donghe-Zhu	2021-03-27
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

###

GLODAP <- GLODAP %>%
  filter(talkqc %in% params_local$flag_qc)

##

GLODAP_stats_temp <- GLODAP %>%
  summarise(talk_flag = n())

GLODAP_stats <- cbind(GLODAP_stats, GLODAP_stats_temp)
rm(GLODAP_stats_temp)

##

GLODAP_obs_grid_temp <- GLODAP %>%
  count(lat, lon, era) %>%
  mutate(cleaning_level = "talk_flag")

GLODAP_obs_grid <-
  bind_rows(GLODAP_obs_grid, GLODAP_obs_grid_temp)

rm(GLODAP_obs_grid_temp)

2.3.3 Phosphate

2.3.3.1 NA

if ("phosphate" %in% params_local$MLR_predictors || "phosphate_star" %in% params_local$MLR_predictors) {

GLODAP <- GLODAP %>% 
  mutate(phosphatena = if_else(is.na(phosphate), "NA", "Value"))

GLODAP_obs_grid_temp <- GLODAP %>%
  count(lat, lon, era, phosphatena)

print(map +
  geom_raster(data = GLODAP_obs_grid_temp, aes(lon, lat, fill = n)) +
  scale_fill_viridis_c(option = "magma",
                       direction = -1,
                       trans = "log10") +
  facet_grid(era ~ phosphatena) +
  theme(legend.position = "top"))

GLODAP <- GLODAP %>% 
  select(-phosphatena) %>% 
  filter(!is.na(phosphate))

##

GLODAP_stats_temp <- GLODAP %>% 
  summarise(phosphate_values = n())

GLODAP_stats <- cbind(GLODAP_stats, GLODAP_stats_temp)
rm(GLODAP_stats_temp)

##

GLODAP_obs_grid_temp <- GLODAP %>% 
  count(lat, lon, era) %>% 
  mutate(cleaning_level = "phosphate_values")

GLODAP_obs_grid <-
  bind_rows(GLODAP_obs_grid, GLODAP_obs_grid_temp)

rm(GLODAP_obs_grid_temp)

}

Past versions of phosphate_na_subset-1.png

Version	Author	Date
a3006cd	Donghe-Zhu	2021-07-30
d5e4458	Donghe-Zhu	2021-07-30
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
d3018f6	Donghe-Zhu	2021-07-28
b8ba2c4	Donghe-Zhu	2021-07-28
a4ddd84	Donghe-Zhu	2021-07-27
7ef49ab	Donghe-Zhu	2021-07-27
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
d0d97c6	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
cac5680	Donghe-Zhu	2021-07-23
9447d10	Donghe-Zhu	2021-07-22
cdc98a3	Donghe-Zhu	2021-07-22
e4805a1	Donghe-Zhu	2021-07-22
b94be4e	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
6f28c0c	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
bc83ef2	Donghe-Zhu	2021-07-07
f2bde6b	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
b883157	Donghe-Zhu	2021-03-27
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

2.3.3.2 f flag

if ("phosphate" %in% params_local$MLR_predictors || "phosphate_star" %in% params_local$MLR_predictors) {

GLODAP_obs_grid_temp <- GLODAP %>%
  count(lat, lon, era, phosphatef)

print(map +
  geom_raster(data = GLODAP_obs_grid_temp, aes(lon, lat, fill = n)) +
    scale_fill_viridis_c(option = "magma",
                       direction = -1,
                       trans = "log10") +
  facet_grid(era~phosphatef) +
  theme(legend.position = "top",
        legend.title = element_blank()))

###

GLODAP <- GLODAP %>%
  filter(phosphatef %in% params_local$flag_f)

}

Past versions of phosphate_f_subset-1.png

Version	Author	Date
a3006cd	Donghe-Zhu	2021-07-30
d5e4458	Donghe-Zhu	2021-07-30
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
d3018f6	Donghe-Zhu	2021-07-28
b8ba2c4	Donghe-Zhu	2021-07-28
a4ddd84	Donghe-Zhu	2021-07-27
7ef49ab	Donghe-Zhu	2021-07-27
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
d0d97c6	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
cac5680	Donghe-Zhu	2021-07-23
9447d10	Donghe-Zhu	2021-07-22
cdc98a3	Donghe-Zhu	2021-07-22
e4805a1	Donghe-Zhu	2021-07-22
b94be4e	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
6f28c0c	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
bc83ef2	Donghe-Zhu	2021-07-07
f2bde6b	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
f2e4805	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
b883157	Donghe-Zhu	2021-03-27
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

2.3.3.3 qc flag

if ("phosphate" %in% params_local$MLR_predictors || "phosphate_star" %in% params_local$MLR_predictors) {

GLODAP_obs_grid_temp <- GLODAP %>%
  count(lat, lon, era, phosphateqc)

print(map +
  geom_raster(data = GLODAP_obs_grid_temp, aes(lon, lat, fill = n)) +
    scale_fill_viridis_c(option = "magma",
                       direction = -1,
                       trans = "log10") +
  facet_grid(era~phosphateqc) +
  theme(legend.position = "top",
        legend.title = element_blank()))


###

GLODAP <- GLODAP %>%
  filter(phosphateqc %in% params_local$flag_qc)

##

GLODAP_stats_temp <- GLODAP %>%
  summarise(phosphate_flag = n())

GLODAP_stats <- cbind(GLODAP_stats, GLODAP_stats_temp)
rm(GLODAP_stats_temp)

##

GLODAP_obs_grid_temp <- GLODAP %>%
  count(lat, lon, era) %>%
  mutate(cleaning_level = "phosphate_flag")

GLODAP_obs_grid <-
  bind_rows(GLODAP_obs_grid, GLODAP_obs_grid_temp)

rm(GLODAP_obs_grid_temp)

}

Past versions of phosphate_qc_subset-1.png

Version	Author	Date
a3006cd	Donghe-Zhu	2021-07-30
d5e4458	Donghe-Zhu	2021-07-30
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
d3018f6	Donghe-Zhu	2021-07-28
b8ba2c4	Donghe-Zhu	2021-07-28
a4ddd84	Donghe-Zhu	2021-07-27
7ef49ab	Donghe-Zhu	2021-07-27
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
d0d97c6	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
cac5680	Donghe-Zhu	2021-07-23
9447d10	Donghe-Zhu	2021-07-22
cdc98a3	Donghe-Zhu	2021-07-22
e4805a1	Donghe-Zhu	2021-07-22
b94be4e	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
6f28c0c	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
bc83ef2	Donghe-Zhu	2021-07-07
f2bde6b	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
f2e4805	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
b883157	Donghe-Zhu	2021-03-27
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

2.3.4 eMLR variables

Variables required as predictors for the MLR fits, are subsetted for NAs and flags.

if ("temp" %in% params_local$MLR_predictors) {
  GLODAP <- GLODAP %>%
    filter(!is.na(temp))
}

##

if ("sal" %in% params_local$MLR_predictors) {
  GLODAP <- GLODAP %>%
    filter(!is.na(sal))
  
  GLODAP <- GLODAP %>%
    filter(salinityf %in% params_local$flag_f)
  
  GLODAP <- GLODAP %>%
    filter(salinityqc %in% params_local$flag_qc)
}

##

if ("silicate" %in% params_local$MLR_predictors || "silicate_star" %in% params_local$MLR_predictors) {
  GLODAP <- GLODAP %>%
    filter(!is.na(silicate))
  
  GLODAP <- GLODAP %>%
    filter(silicatef %in% params_local$flag_f)
  
  GLODAP <- GLODAP %>%
    filter(silicateqc %in% params_local$flag_qc)
}

##

if ("oxygen" %in% params_local$MLR_predictors) {
  GLODAP <- GLODAP %>%
    filter(!is.na(oxygen))
  
  GLODAP <- GLODAP %>%
    filter(oxygenf %in% params_local$flag_f)
  
  GLODAP <- GLODAP %>%
    filter(oxygenqc %in% params_local$flag_qc)
}

##

if ("aou" %in% params_local$MLR_predictors) {
  GLODAP <- GLODAP %>%
    filter(!is.na(aou))
  
  GLODAP <- GLODAP %>%
    filter(aouf %in% params_local$flag_f)
}

##

if ("nitrate" %in% params_local$MLR_predictors) {
  GLODAP <- GLODAP %>%
    filter(!is.na(nitrate))
  
  GLODAP <- GLODAP %>%
    filter(nitratef %in% params_local$flag_f)
  
  GLODAP <- GLODAP %>%
    filter(nitrateqc %in% params_local$flag_qc)
}

##

GLODAP <- GLODAP %>%
  filter(!is.na(depth))

GLODAP <- GLODAP %>%
  filter(!is.na(gamma))

##

GLODAP_stats_temp <- GLODAP %>%
  summarise(eMLR_variables = n())

GLODAP_stats <- cbind(GLODAP_stats, GLODAP_stats_temp)

rm(GLODAP_stats_temp)

##

GLODAP_obs_grid_temp <- GLODAP %>%
  count(lat, lon, era) %>%
  mutate(cleaning_level = "eMLR_variables")

GLODAP_obs_grid <-
  bind_rows(GLODAP_obs_grid, GLODAP_obs_grid_temp)

rm(GLODAP_obs_grid_temp)

GLODAP <- GLODAP %>% 
  select(-ends_with(c("f", "qc")))

2.4 Manual adjustment A16 cruise

For harmonization with Gruber et al. (2019), cruises 1041 (A16N) and 1042 (A16S) were grouped into the 2000-2009 era despite taking place in 2013/14.

GLODAP_cruises <- GLODAP %>% 
  filter(basin_AIP == "Atlantic",
         year %in% c(2013, 2014)) %>% 
  count(lat, lon, cruise)

map +
  geom_raster(data = GLODAP_cruises, aes(lon, lat, fill = as.factor(cruise))) +
  scale_fill_brewer(palette = "Dark2") +
  theme(legend.position = "top",
        legend.title = element_blank())

Past versions of GLODAP_Atl_cruises_2013_2014_map-1.png

Version	Author	Date
a55ffdc	Donghe-Zhu	2021-07-30
d5e4458	Donghe-Zhu	2021-07-30
10a97ef	Donghe-Zhu	2021-07-30
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
d3018f6	Donghe-Zhu	2021-07-28
b8ba2c4	Donghe-Zhu	2021-07-28
a4ddd84	Donghe-Zhu	2021-07-27
7ef49ab	Donghe-Zhu	2021-07-27
da818c0	Donghe-Zhu	2021-07-27
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
d0d97c6	Donghe-Zhu	2021-07-27
829510d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
cac5680	Donghe-Zhu	2021-07-23
9447d10	Donghe-Zhu	2021-07-22
cdc98a3	Donghe-Zhu	2021-07-22
e4805a1	Donghe-Zhu	2021-07-22
b94be4e	Donghe-Zhu	2021-07-21
6f28c0c	Donghe-Zhu	2021-07-20
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
e377833	Donghe-Zhu	2021-05-26
b883157	Donghe-Zhu	2021-03-27
d19654d	Donghe-Zhu	2021-03-26
1914a11	Donghe-Zhu	2021-03-24
8be810e	Donghe-Zhu	2021-03-23
3ec9d3d	Donghe-Zhu	2021-03-22
134ace1	Donghe-Zhu	2021-03-22
f6d70a4	Donghe-Zhu	2021-03-22
2e6976b	Donghe-Zhu	2021-03-21
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
db33928	Donghe-Zhu	2021-03-10
9b7bc66	Donghe-Zhu	2021-03-10
9d5a62c	Donghe-Zhu	2021-03-10
5d1e70b	Donghe-Zhu	2021-03-10
17f1c4a	Donghe-Zhu	2021-03-09
8c1e978	Donghe-Zhu	2021-03-05
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
66ff99f	Donghe-Zhu	2021-03-01
ac9bb7a	Donghe-Zhu	2021-02-28
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
21c91c9	Donghe-Zhu	2021-01-29
eded038	Donghe-Zhu	2021-01-29
8b97165	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
c8b76b3	jens-daniel-mueller	2020-12-19

rm(GLODAP_cruises)

if (params_local$A16_GO_SHIP == "y") {

GLODAP <- GLODAP %>%
   mutate(era = if_else(cruise %in% c(1041, 1042),
                        sort(unique(GLODAP$era))[2], era))

}

2.5 Create clean observations grid

Grid containing all grid cells where at least one synthetic subsetting remains available after cleaning.

GLODAP_obs_grid_clean <- GLODAP %>% 
  count(lat, lon) %>% 
  select(-n)

random_obs_grid_clean <- random %>% 
  count(lat, lon) %>% 
  select(-n)

2.6 Write summary file

GLODAP_obs_grid_clean  %>%  write_csv(paste(
  path_version_data,
  "GLODAPv2.2020_clean_GLODAP_obs_grid.csv",
  sep = ""
))

# select relevant columns for further analysis
if (!("phosphate" %in% params_local$MLR_predictors || "phosphate_star" %in% params_local$MLR_predictors) && ("silicate" %in% params_local$MLR_predictors || "silicate_star" %in% params_local$MLR_predictors)) {
  GLODAP <- GLODAP %>%
    select(
      year,
      date,
      era,
      basin,
      basin_AIP,
      lat,
      lon,
      cruise,
      bottomdepth,
      depth,
      temp,
      sal,
      gamma,
      tco2,
      talk,
      oxygen,
      # phosphate,
      aou,
      nitrate,
      silicate
    )
  
} else if (("phosphate" %in% params_local$MLR_predictors || "phosphate_star" %in% params_local$MLR_predictors) && !("silicate" %in% params_local$MLR_predictors || "silicate_star" %in% params_local$MLR_predictors)) {
  GLODAP <- GLODAP %>%
    select(
      year,
      date,
      era,
      basin,
      basin_AIP,
      lat,
      lon,
      cruise,
      bottomdepth,
      depth,
      temp,
      sal,
      gamma,
      tco2,
      talk,
      oxygen,
      phosphate,
      aou,
      nitrate
      # silicate
    )
} else if (("phosphate" %in% params_local$MLR_predictors || "phosphate_star" %in% params_local$MLR_predictors) && ("silicate" %in% params_local$MLR_predictors || "silicate_star" %in% params_local$MLR_predictors)) {
  GLODAP <- GLODAP %>%
    select(
      year,
      date,
      era,
      basin,
      basin_AIP,
      lat,
      lon,
      cruise,
      bottomdepth,
      depth,
      temp,
      sal,
      gamma,
      tco2,
      talk,
      oxygen,
      phosphate,
      aou,
      nitrate,
      silicate
    )
} else {
  
  GLODAP <- GLODAP %>%
    select(
      year,
      date,
      era,
      basin,
      basin_AIP,
      lat,
      lon,
      cruise,
      bottomdepth,
      depth,
      temp,
      sal,
      gamma,
      tco2,
      talk,
      oxygen,
   #   phosphate,
      aou,
      nitrate
    #  silicate
    )
}

GLODAP  %>%  write_csv(paste(path_version_data,
                             "GLODAPv2.2020_clean_GLODAP.csv",
                             sep = ""))

random_obs_grid_clean  %>%  write_csv(paste(
  path_version_data,
  "GLODAPv2.2020_clean_random_obs_grid.csv",
  sep = ""
))

random  %>%  write_csv(paste(path_version_data,
                             "GLODAPv2.2020_clean_random.csv",
                             sep = ""))

3 Overview plots

3.1 Cleaning stats

Number of GLODAP-based subsetting model data at various steps of data cleaning.

GLODAP_stats_long <- GLODAP_stats %>%
  pivot_longer(1:length(GLODAP_stats),
               names_to = "parameter",
               values_to = "n")

GLODAP_stats_long <- GLODAP_stats_long %>%
  mutate(parameter = fct_reorder(parameter, n))

GLODAP_stats_long %>% 
  ggplot(aes(parameter, n/1000)) +
  geom_col() +
  coord_flip() +
  theme(axis.title.y = element_blank())

Past versions of GLODAP-based_subsetting_data_cleaning_stats-1.png

Version	Author	Date
a3006cd	Donghe-Zhu	2021-07-30
a55ffdc	Donghe-Zhu	2021-07-30
d5e4458	Donghe-Zhu	2021-07-30
10a97ef	Donghe-Zhu	2021-07-30
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
d3018f6	Donghe-Zhu	2021-07-28
b8ba2c4	Donghe-Zhu	2021-07-28
a4ddd84	Donghe-Zhu	2021-07-27
7ef49ab	Donghe-Zhu	2021-07-27
da818c0	Donghe-Zhu	2021-07-27
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
d0d97c6	Donghe-Zhu	2021-07-27
829510d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
cac5680	Donghe-Zhu	2021-07-23
9447d10	Donghe-Zhu	2021-07-22
cdc98a3	Donghe-Zhu	2021-07-22
e4805a1	Donghe-Zhu	2021-07-22
b94be4e	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
6f28c0c	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
f2bde6b	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
d19654d	Donghe-Zhu	2021-03-26
1914a11	Donghe-Zhu	2021-03-24
8be810e	Donghe-Zhu	2021-03-23
3ec9d3d	Donghe-Zhu	2021-03-22
134ace1	Donghe-Zhu	2021-03-22
f6d70a4	Donghe-Zhu	2021-03-22
183443b	Donghe-Zhu	2021-03-21
2e6976b	Donghe-Zhu	2021-03-21
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
db33928	Donghe-Zhu	2021-03-10
9b7bc66	Donghe-Zhu	2021-03-10
9d5a62c	Donghe-Zhu	2021-03-10
5d1e70b	Donghe-Zhu	2021-03-10
cc2a956	Donghe-Zhu	2021-03-10
17f1c4a	Donghe-Zhu	2021-03-09
8c1e978	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
89c3e58	Donghe-Zhu	2021-03-03
13666ca	Donghe-Zhu	2021-03-01
7a388f7	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
ac9bb7a	Donghe-Zhu	2021-02-28
efdc047	Donghe-Zhu	2021-02-28
19edd1e	Donghe-Zhu	2021-02-27
354c224	Donghe-Zhu	2021-02-24
5dce4b1	Donghe-Zhu	2021-02-15
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
af8788e	Donghe-Zhu	2021-01-29
21c91c9	Donghe-Zhu	2021-01-29
eded038	Donghe-Zhu	2021-01-29
541d4dd	Donghe-Zhu	2021-01-29
6a75576	Donghe-Zhu	2021-01-28
c1cec47	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
fb8a752	Donghe-Zhu	2020-12-23

rm(GLODAP_stats_long)

3.2 Assign coarse spatial grid

For the following plots, the cleaned data set was re-opened and GLODAP-based subsetting data were gridded spatially to intervals of:

• 5° x 5°

GLODAP <- m_grid_horizontal_coarse(GLODAP)
random <- m_grid_horizontal_coarse(random)

3.3 Histogram Zonal coverage

GLODAP_histogram_lat <- GLODAP %>%
  group_by(era, lat_grid, basin) %>%
  tally() %>%
  ungroup()

GLODAP_histogram_lat %>%
  ggplot(aes(lat_grid, n, fill = era)) +
  geom_col() +
  scale_fill_brewer(palette = "Dark2") +
  facet_wrap( ~ basin) +
  coord_flip() +
  theme(legend.position = "top",
        legend.title = element_blank())

Past versions of coverage_histogram_zonal-1.png

Version	Author	Date
a55ffdc	Donghe-Zhu	2021-07-30
d5e4458	Donghe-Zhu	2021-07-30
10a97ef	Donghe-Zhu	2021-07-30
1c501fd	Donghe-Zhu	2021-07-30
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
3ba7852	Donghe-Zhu	2021-07-29
ec68363	Donghe-Zhu	2021-07-28
d3018f6	Donghe-Zhu	2021-07-28
b8ba2c4	Donghe-Zhu	2021-07-28
a4ddd84	Donghe-Zhu	2021-07-27
7ef49ab	Donghe-Zhu	2021-07-27
da818c0	Donghe-Zhu	2021-07-27
8623898	Donghe-Zhu	2021-07-27
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
d0d97c6	Donghe-Zhu	2021-07-27
829510d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
cac5680	Donghe-Zhu	2021-07-23
dcf34b1	Donghe-Zhu	2021-07-23
9447d10	Donghe-Zhu	2021-07-22
cdc98a3	Donghe-Zhu	2021-07-22
e4805a1	Donghe-Zhu	2021-07-22
7957fd1	Donghe-Zhu	2021-07-21
b94be4e	Donghe-Zhu	2021-07-21
9950e70	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
6f28c0c	Donghe-Zhu	2021-07-20
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
f2bde6b	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
d44db8e	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
a482a6b	Donghe-Zhu	2021-07-05
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
90a9da5	Donghe-Zhu	2021-06-25
e7a5266	Donghe-Zhu	2021-06-24
7c57720	Donghe-Zhu	2021-06-24
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
256a616	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
d20c383	Donghe-Zhu	2021-06-18
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
25dda1d	Donghe-Zhu	2021-06-08
bd2bcc3	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
7ae0d4b	Donghe-Zhu	2021-06-07
325391f	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
75dda4d	Donghe-Zhu	2021-03-27
0b19f6e	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
b883157	Donghe-Zhu	2021-03-27
0c20513	Donghe-Zhu	2021-03-26
d19654d	Donghe-Zhu	2021-03-26
1914a11	Donghe-Zhu	2021-03-24
8be810e	Donghe-Zhu	2021-03-23
bf19764	Donghe-Zhu	2021-03-22
3ec9d3d	Donghe-Zhu	2021-03-22
134ace1	Donghe-Zhu	2021-03-22
f6d70a4	Donghe-Zhu	2021-03-22
183443b	Donghe-Zhu	2021-03-21
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
db33928	Donghe-Zhu	2021-03-10
9b7bc66	Donghe-Zhu	2021-03-10
5365f80	Donghe-Zhu	2021-03-10
9d5a62c	Donghe-Zhu	2021-03-10
5d1e70b	Donghe-Zhu	2021-03-10
cc2a956	Donghe-Zhu	2021-03-10
17f1c4a	Donghe-Zhu	2021-03-09
02f7242	Donghe-Zhu	2021-03-09
1691156	Donghe-Zhu	2021-03-08
c0ceaf8	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
627c8fb	Donghe-Zhu	2021-03-07
3607f4d	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
89c3e58	Donghe-Zhu	2021-03-03
13666ca	Donghe-Zhu	2021-03-01
7a388f7	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
ac9bb7a	Donghe-Zhu	2021-02-28
efdc047	Donghe-Zhu	2021-02-28
19edd1e	Donghe-Zhu	2021-02-27
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
354c224	Donghe-Zhu	2021-02-24
57f701e	Donghe-Zhu	2021-02-24
06f3149	Donghe-Zhu	2021-02-16
5dce4b1	Donghe-Zhu	2021-02-15
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
1fad5f1	Donghe-Zhu	2021-02-07
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
59e006e	Donghe-Zhu	2021-01-31
a1c8f87	Donghe-Zhu	2021-01-31
ae5c18f	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
af8788e	Donghe-Zhu	2021-01-29
21c91c9	Donghe-Zhu	2021-01-29
eded038	Donghe-Zhu	2021-01-29
541d4dd	Donghe-Zhu	2021-01-29
6a75576	Donghe-Zhu	2021-01-28
16fba40	Donghe-Zhu	2021-01-28
ceed31b	Donghe-Zhu	2021-01-27
61efb56	Donghe-Zhu	2021-01-25
48f638e	Donghe-Zhu	2021-01-25
c1cec47	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
a2f0d56	Donghe-Zhu	2021-01-23
28509fc	Donghe-Zhu	2021-01-23
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

rm(GLODAP_histogram_lat)

random_histogram_lat <- random %>%
  group_by(era, lat_grid, basin) %>%
  tally() %>%
  ungroup()

random_histogram_lat %>%
  ggplot(aes(lat_grid, n, fill = era)) +
  geom_col() +
  scale_fill_brewer(palette = "Dark2") +
  facet_wrap( ~ basin) +
  coord_flip() +
  theme(legend.position = "top",
        legend.title = element_blank())

Past versions of coverage_histogram_zonal-2.png

Version	Author	Date
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
3ba7852	Donghe-Zhu	2021-07-29
ec68363	Donghe-Zhu	2021-07-28
d3018f6	Donghe-Zhu	2021-07-28
a4ddd84	Donghe-Zhu	2021-07-27
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
dcf34b1	Donghe-Zhu	2021-07-23
e4805a1	Donghe-Zhu	2021-07-22
7957fd1	Donghe-Zhu	2021-07-21
9950e70	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
d44db8e	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
a482a6b	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
90a9da5	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
e7a5266	Donghe-Zhu	2021-06-24
7c57720	Donghe-Zhu	2021-06-24
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
256a616	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
d20c383	Donghe-Zhu	2021-06-18
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
25dda1d	Donghe-Zhu	2021-06-08
bd2bcc3	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
7ae0d4b	Donghe-Zhu	2021-06-07
325391f	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
75dda4d	Donghe-Zhu	2021-03-27
0b19f6e	Donghe-Zhu	2021-03-27
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
b883157	Donghe-Zhu	2021-03-27
1914a11	Donghe-Zhu	2021-03-24
bf19764	Donghe-Zhu	2021-03-22
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
5365f80	Donghe-Zhu	2021-03-10
cc2a956	Donghe-Zhu	2021-03-10
02f7242	Donghe-Zhu	2021-03-09
1691156	Donghe-Zhu	2021-03-08
c0ceaf8	Donghe-Zhu	2021-03-08
112dea0	Donghe-Zhu	2021-03-08
65b0cef	Donghe-Zhu	2021-03-07
4083a6c	Donghe-Zhu	2021-03-07
3fbbfa4	Donghe-Zhu	2021-03-07
627c8fb	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
19edd1e	Donghe-Zhu	2021-02-27
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
57f701e	Donghe-Zhu	2021-02-24
06f3149	Donghe-Zhu	2021-02-16
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
1fad5f1	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
59e006e	Donghe-Zhu	2021-01-31
a1c8f87	Donghe-Zhu	2021-01-31
ae5c18f	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
ceed31b	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
61efb56	Donghe-Zhu	2021-01-25
48f638e	Donghe-Zhu	2021-01-25
a2f0d56	Donghe-Zhu	2021-01-23
28509fc	Donghe-Zhu	2021-01-23
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a076226	Donghe-Zhu	2021-01-11

rm(random_histogram_lat)

3.4 Median years (tref)

Median years of each era (tref) were determined as:

era_median_year_GLODAP <- GLODAP %>%
  group_by(era) %>%
  summarise(t_ref = median(year)) %>%
  ungroup()

era_median_year_GLODAP

# A tibble: 3 x 2
  era       t_ref
  <fct>     <dbl>
1 1982-1999  1994
2 2000-2009  2005
3 2010-2019  2014

era_median_year_random <- random %>%
  group_by(era) %>%
  summarise(t_ref = median(year)) %>%
  ungroup()

era_median_year_random

# A tibble: 3 x 2
  era       t_ref
  <fct>     <dbl>
1 1982-1999  1991
2 2000-2009  2004
3 2010-2019  2014

3.5 Histogram temporal coverage

GLODAP_histogram_year <- GLODAP %>%
  group_by(year, basin) %>%
  tally() %>%
  ungroup()

GLODAP_histogram_year %>%
  ggplot() +
  geom_vline(xintercept = c(
    params_local$era_breaks + 0.5
  )) +
  geom_col(aes(year, n, fill = basin)) +
  geom_point(
    data = era_median_year_GLODAP,
    aes(t_ref, 0, shape = "Median year"),
    size = 2,
    fill = "white"
  ) +
  scale_fill_brewer(palette = "Dark2") +
  scale_shape_manual(values = 24, name = "") +
  scale_y_continuous() +
  coord_cartesian() +
  theme(
    legend.position = "top",
    legend.direction = "vertical",
    legend.title = element_blank(),
    axis.title.x = element_blank()
  )

Past versions of coverage_histogram_temporal-1.png

Version	Author	Date
a55ffdc	Donghe-Zhu	2021-07-30
d5e4458	Donghe-Zhu	2021-07-30
10a97ef	Donghe-Zhu	2021-07-30
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
3ba7852	Donghe-Zhu	2021-07-29
ec68363	Donghe-Zhu	2021-07-28
d3018f6	Donghe-Zhu	2021-07-28
b8ba2c4	Donghe-Zhu	2021-07-28
a4ddd84	Donghe-Zhu	2021-07-27
7ef49ab	Donghe-Zhu	2021-07-27
da818c0	Donghe-Zhu	2021-07-27
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
d0d97c6	Donghe-Zhu	2021-07-27
829510d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
cac5680	Donghe-Zhu	2021-07-23
dcf34b1	Donghe-Zhu	2021-07-23
9447d10	Donghe-Zhu	2021-07-22
cdc98a3	Donghe-Zhu	2021-07-22
e4805a1	Donghe-Zhu	2021-07-22
7957fd1	Donghe-Zhu	2021-07-21
b94be4e	Donghe-Zhu	2021-07-21
9950e70	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
6f28c0c	Donghe-Zhu	2021-07-20
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
f2bde6b	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
d44db8e	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
a482a6b	Donghe-Zhu	2021-07-05
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
90a9da5	Donghe-Zhu	2021-06-25
e7a5266	Donghe-Zhu	2021-06-24
7c57720	Donghe-Zhu	2021-06-24
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
256a616	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
d20c383	Donghe-Zhu	2021-06-18
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
25dda1d	Donghe-Zhu	2021-06-08
bd2bcc3	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
7ae0d4b	Donghe-Zhu	2021-06-07
325391f	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
75dda4d	Donghe-Zhu	2021-03-27
0b19f6e	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
b883157	Donghe-Zhu	2021-03-27
d19654d	Donghe-Zhu	2021-03-26
1914a11	Donghe-Zhu	2021-03-24
8be810e	Donghe-Zhu	2021-03-23
bf19764	Donghe-Zhu	2021-03-22
3ec9d3d	Donghe-Zhu	2021-03-22
134ace1	Donghe-Zhu	2021-03-22
f6d70a4	Donghe-Zhu	2021-03-22
183443b	Donghe-Zhu	2021-03-21
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
db33928	Donghe-Zhu	2021-03-10
9b7bc66	Donghe-Zhu	2021-03-10
5365f80	Donghe-Zhu	2021-03-10
9d5a62c	Donghe-Zhu	2021-03-10
5d1e70b	Donghe-Zhu	2021-03-10
cc2a956	Donghe-Zhu	2021-03-10
17f1c4a	Donghe-Zhu	2021-03-09
02f7242	Donghe-Zhu	2021-03-09
1691156	Donghe-Zhu	2021-03-08
c0ceaf8	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
627c8fb	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
89c3e58	Donghe-Zhu	2021-03-03
13666ca	Donghe-Zhu	2021-03-01
7a388f7	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
ac9bb7a	Donghe-Zhu	2021-02-28
efdc047	Donghe-Zhu	2021-02-28
19edd1e	Donghe-Zhu	2021-02-27
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
354c224	Donghe-Zhu	2021-02-24
57f701e	Donghe-Zhu	2021-02-24
06f3149	Donghe-Zhu	2021-02-16
5dce4b1	Donghe-Zhu	2021-02-15
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
1fad5f1	Donghe-Zhu	2021-02-07
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
59e006e	Donghe-Zhu	2021-01-31
a1c8f87	Donghe-Zhu	2021-01-31
ae5c18f	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
af8788e	Donghe-Zhu	2021-01-29
21c91c9	Donghe-Zhu	2021-01-29
eded038	Donghe-Zhu	2021-01-29
541d4dd	Donghe-Zhu	2021-01-29
6a75576	Donghe-Zhu	2021-01-28
16fba40	Donghe-Zhu	2021-01-28
ceed31b	Donghe-Zhu	2021-01-27
61efb56	Donghe-Zhu	2021-01-25
48f638e	Donghe-Zhu	2021-01-25
c1cec47	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
a2f0d56	Donghe-Zhu	2021-01-23
28509fc	Donghe-Zhu	2021-01-23
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

rm(GLODAP_histogram_year,
   era_median_year_GLODAP)

random_histogram_year <- random %>%
  group_by(year, basin) %>%
  tally() %>%
  ungroup()

random_histogram_year %>%
  ggplot() +
  geom_vline(xintercept = c(
    params_local$era_breaks + 0.5
  )) +
  geom_col(aes(year, n, fill = basin)) +
  geom_point(
    data = era_median_year_random,
    aes(t_ref, 0, shape = "Median year"),
    size = 2,
    fill = "white"
  ) +
  scale_fill_brewer(palette = "Dark2") +
  scale_shape_manual(values = 24, name = "") +
  scale_y_continuous() +
  coord_cartesian() +
  theme(
    legend.position = "top",
    legend.direction = "vertical",
    legend.title = element_blank(),
    axis.title.x = element_blank()
  )

Past versions of coverage_histogram_temporal-2.png

Version	Author	Date
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
3ba7852	Donghe-Zhu	2021-07-29
ec68363	Donghe-Zhu	2021-07-28
d3018f6	Donghe-Zhu	2021-07-28
a4ddd84	Donghe-Zhu	2021-07-27
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
dcf34b1	Donghe-Zhu	2021-07-23
e4805a1	Donghe-Zhu	2021-07-22
7957fd1	Donghe-Zhu	2021-07-21
9950e70	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
d44db8e	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
a482a6b	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
90a9da5	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
e7a5266	Donghe-Zhu	2021-06-24
7c57720	Donghe-Zhu	2021-06-24
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
256a616	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
d20c383	Donghe-Zhu	2021-06-18
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
25dda1d	Donghe-Zhu	2021-06-08
bd2bcc3	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
7ae0d4b	Donghe-Zhu	2021-06-07
325391f	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
75dda4d	Donghe-Zhu	2021-03-27
0b19f6e	Donghe-Zhu	2021-03-27
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
b883157	Donghe-Zhu	2021-03-27
1914a11	Donghe-Zhu	2021-03-24
bf19764	Donghe-Zhu	2021-03-22
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
5365f80	Donghe-Zhu	2021-03-10
cc2a956	Donghe-Zhu	2021-03-10
02f7242	Donghe-Zhu	2021-03-09
1691156	Donghe-Zhu	2021-03-08
c0ceaf8	Donghe-Zhu	2021-03-08
112dea0	Donghe-Zhu	2021-03-08
65b0cef	Donghe-Zhu	2021-03-07
4083a6c	Donghe-Zhu	2021-03-07
3fbbfa4	Donghe-Zhu	2021-03-07
627c8fb	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
19edd1e	Donghe-Zhu	2021-02-27
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
57f701e	Donghe-Zhu	2021-02-24
06f3149	Donghe-Zhu	2021-02-16
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
1fad5f1	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
59e006e	Donghe-Zhu	2021-01-31
a1c8f87	Donghe-Zhu	2021-01-31
ae5c18f	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
ceed31b	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
61efb56	Donghe-Zhu	2021-01-25
48f638e	Donghe-Zhu	2021-01-25
a2f0d56	Donghe-Zhu	2021-01-23
28509fc	Donghe-Zhu	2021-01-23
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a076226	Donghe-Zhu	2021-01-11

rm(random_histogram_year,
   era_median_year_random)

3.6 Zonal temporal coverage (Hovmoeller)

GLODAP_hovmoeller_year <- GLODAP %>%
  group_by(year, lat_grid, basin) %>%
  tally() %>%
  ungroup()

GLODAP_hovmoeller_year %>%
  ggplot(aes(year, lat_grid, fill = n)) +
  geom_tile() +
  geom_vline(xintercept = c(1999.5, 2012.5)) +
  scale_fill_viridis_c(option = "magma",
                       direction = -1,
                       trans = "log10") +
  facet_wrap( ~ basin, ncol = 1) +
  theme(legend.position = "top",
        axis.title.x = element_blank())

Past versions of coverage_hovmoeller-1.png

Version	Author	Date
a55ffdc	Donghe-Zhu	2021-07-30
d5e4458	Donghe-Zhu	2021-07-30
10a97ef	Donghe-Zhu	2021-07-30
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
3ba7852	Donghe-Zhu	2021-07-29
ec68363	Donghe-Zhu	2021-07-28
d3018f6	Donghe-Zhu	2021-07-28
b8ba2c4	Donghe-Zhu	2021-07-28
a4ddd84	Donghe-Zhu	2021-07-27
7ef49ab	Donghe-Zhu	2021-07-27
da818c0	Donghe-Zhu	2021-07-27
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
d0d97c6	Donghe-Zhu	2021-07-27
829510d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
cac5680	Donghe-Zhu	2021-07-23
dcf34b1	Donghe-Zhu	2021-07-23
9447d10	Donghe-Zhu	2021-07-22
cdc98a3	Donghe-Zhu	2021-07-22
e4805a1	Donghe-Zhu	2021-07-22
7957fd1	Donghe-Zhu	2021-07-21
b94be4e	Donghe-Zhu	2021-07-21
9950e70	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
6f28c0c	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
f2bde6b	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
d44db8e	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
a482a6b	Donghe-Zhu	2021-07-05
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
90a9da5	Donghe-Zhu	2021-06-25
e7a5266	Donghe-Zhu	2021-06-24
7c57720	Donghe-Zhu	2021-06-24
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
256a616	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
d20c383	Donghe-Zhu	2021-06-18
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
25dda1d	Donghe-Zhu	2021-06-08
bd2bcc3	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
7ae0d4b	Donghe-Zhu	2021-06-07
325391f	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
75dda4d	Donghe-Zhu	2021-03-27
0b19f6e	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
b883157	Donghe-Zhu	2021-03-27
d19654d	Donghe-Zhu	2021-03-26
1914a11	Donghe-Zhu	2021-03-24
8be810e	Donghe-Zhu	2021-03-23
bf19764	Donghe-Zhu	2021-03-22
3ec9d3d	Donghe-Zhu	2021-03-22
134ace1	Donghe-Zhu	2021-03-22
f6d70a4	Donghe-Zhu	2021-03-22
183443b	Donghe-Zhu	2021-03-21
2e6976b	Donghe-Zhu	2021-03-21
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
db33928	Donghe-Zhu	2021-03-10
9b7bc66	Donghe-Zhu	2021-03-10
5365f80	Donghe-Zhu	2021-03-10
9d5a62c	Donghe-Zhu	2021-03-10
5d1e70b	Donghe-Zhu	2021-03-10
cc2a956	Donghe-Zhu	2021-03-10
17f1c4a	Donghe-Zhu	2021-03-09
02f7242	Donghe-Zhu	2021-03-09
1691156	Donghe-Zhu	2021-03-08
c0ceaf8	Donghe-Zhu	2021-03-08
3fbbfa4	Donghe-Zhu	2021-03-07
627c8fb	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
89c3e58	Donghe-Zhu	2021-03-03
13666ca	Donghe-Zhu	2021-03-01
7a388f7	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
ac9bb7a	Donghe-Zhu	2021-02-28
efdc047	Donghe-Zhu	2021-02-28
19edd1e	Donghe-Zhu	2021-02-27
f20483f	Donghe-Zhu	2021-02-26
354c224	Donghe-Zhu	2021-02-24
57f701e	Donghe-Zhu	2021-02-24
06f3149	Donghe-Zhu	2021-02-16
5dce4b1	Donghe-Zhu	2021-02-15
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
a145fa7	Donghe-Zhu	2021-02-09
1fad5f1	Donghe-Zhu	2021-02-07
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
59e006e	Donghe-Zhu	2021-01-31
a1c8f87	Donghe-Zhu	2021-01-31
ae5c18f	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
af8788e	Donghe-Zhu	2021-01-29
21c91c9	Donghe-Zhu	2021-01-29
eded038	Donghe-Zhu	2021-01-29
541d4dd	Donghe-Zhu	2021-01-29
6a75576	Donghe-Zhu	2021-01-28
16fba40	Donghe-Zhu	2021-01-28
ceed31b	Donghe-Zhu	2021-01-27
61efb56	Donghe-Zhu	2021-01-25
48f638e	Donghe-Zhu	2021-01-25
c1cec47	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
a2f0d56	Donghe-Zhu	2021-01-23
28509fc	Donghe-Zhu	2021-01-23
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

rm(GLODAP_hovmoeller_year)

random_hovmoeller_year <- random %>%
  group_by(year, lat_grid, basin) %>%
  tally() %>%
  ungroup()

random_hovmoeller_year %>%
  ggplot(aes(year, lat_grid, fill = n)) +
  geom_tile() +
  geom_vline(xintercept = c(1999.5, 2012.5)) +
  scale_fill_viridis_c(option = "magma",
                       direction = -1,
                       trans = "log10") +
  facet_wrap( ~ basin, ncol = 1) +
  theme(legend.position = "top",
        axis.title.x = element_blank())

Past versions of coverage_hovmoeller-2.png

Version	Author	Date
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
3ba7852	Donghe-Zhu	2021-07-29
ec68363	Donghe-Zhu	2021-07-28
d3018f6	Donghe-Zhu	2021-07-28
a4ddd84	Donghe-Zhu	2021-07-27
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
dcf34b1	Donghe-Zhu	2021-07-23
e4805a1	Donghe-Zhu	2021-07-22
7957fd1	Donghe-Zhu	2021-07-21
9950e70	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
75e7b07	Donghe-Zhu	2021-07-06
697aa6d	Donghe-Zhu	2021-07-06
d52e2de	Donghe-Zhu	2021-07-06
f2bde6b	Donghe-Zhu	2021-07-06
1133f28	Donghe-Zhu	2021-07-06
fe3a1cd	Donghe-Zhu	2021-07-06
d9cdf15	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
93821c1	Donghe-Zhu	2021-07-05
d44db8e	Donghe-Zhu	2021-07-05
20b3436	Donghe-Zhu	2021-07-05
d982ea5	Donghe-Zhu	2021-07-05
7397e53	Donghe-Zhu	2021-07-05
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
a482a6b	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
90a9da5	Donghe-Zhu	2021-06-25
bb413c8	Donghe-Zhu	2021-06-25
e7a5266	Donghe-Zhu	2021-06-24
7c57720	Donghe-Zhu	2021-06-24
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
9221bfe	Donghe-Zhu	2021-06-24
bff5fbf	Donghe-Zhu	2021-06-23
256a616	Donghe-Zhu	2021-06-23
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
d20c383	Donghe-Zhu	2021-06-18
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
25dda1d	Donghe-Zhu	2021-06-08
bd2bcc3	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
7ae0d4b	Donghe-Zhu	2021-06-07
325391f	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
a618f02	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
2705a04	Donghe-Zhu	2021-03-28
cd5f759	Donghe-Zhu	2021-03-28
75dda4d	Donghe-Zhu	2021-03-27
0b19f6e	Donghe-Zhu	2021-03-27
e2704ca	Donghe-Zhu	2021-03-27
3061a0b	Donghe-Zhu	2021-03-27
b883157	Donghe-Zhu	2021-03-27
1914a11	Donghe-Zhu	2021-03-24
bf19764	Donghe-Zhu	2021-03-22
2e6976b	Donghe-Zhu	2021-03-21
1b2a0c2	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
5365f80	Donghe-Zhu	2021-03-10
cc2a956	Donghe-Zhu	2021-03-10
02f7242	Donghe-Zhu	2021-03-09
1691156	Donghe-Zhu	2021-03-08
c0ceaf8	Donghe-Zhu	2021-03-08
112dea0	Donghe-Zhu	2021-03-08
65b0cef	Donghe-Zhu	2021-03-07
4083a6c	Donghe-Zhu	2021-03-07
3fbbfa4	Donghe-Zhu	2021-03-07
627c8fb	Donghe-Zhu	2021-03-07
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
19edd1e	Donghe-Zhu	2021-02-27
f20483f	Donghe-Zhu	2021-02-26
57f701e	Donghe-Zhu	2021-02-24
06f3149	Donghe-Zhu	2021-02-16
4469a0c	Donghe-Zhu	2021-02-13
5ae6a69	Donghe-Zhu	2021-02-10
05385dc	Donghe-Zhu	2021-02-10
f791ae4	Donghe-Zhu	2021-02-09
f71ae34	Donghe-Zhu	2021-02-09
a145fa7	Donghe-Zhu	2021-02-09
c344e42	Donghe-Zhu	2021-02-08
1fad5f1	Donghe-Zhu	2021-02-07
ca03c39	Donghe-Zhu	2021-02-07
cd7c52c	Donghe-Zhu	2021-02-04
bcf84f4	Donghe-Zhu	2021-02-02
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
59e006e	Donghe-Zhu	2021-01-31
a1c8f87	Donghe-Zhu	2021-01-31
ae5c18f	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
16fba40	Donghe-Zhu	2021-01-28
12bc567	Donghe-Zhu	2021-01-27
ceed31b	Donghe-Zhu	2021-01-27
342402d	Donghe-Zhu	2021-01-27
5bad5c2	Donghe-Zhu	2021-01-27
61efb56	Donghe-Zhu	2021-01-25
48f638e	Donghe-Zhu	2021-01-25
a2f0d56	Donghe-Zhu	2021-01-23
28509fc	Donghe-Zhu	2021-01-23
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
d4cf1cb	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
b3564aa	jens-daniel-mueller	2021-01-14
8d032c3	jens-daniel-mueller	2021-01-14
a076226	Donghe-Zhu	2021-01-11

rm(random_hovmoeller_year)

3.7 Coverage maps by era

3.7.1 Subsetting process

The following plots show the remaining data after individual cleaning steps, separately for each era.

GLODAP_obs_grid <- GLODAP_obs_grid %>%
  mutate(cleaning_level = factor(
           cleaning_level,
           unique(GLODAP_obs_grid$cleaning_level)
         ))

map +
  geom_raster(data = GLODAP_obs_grid %>%
                filter(cleaning_level == "tco2_values") %>%
                select(-cleaning_level),
              aes(lon, lat, fill = "tco2_values")) +
  geom_raster(data = GLODAP_obs_grid %>%
                filter(cleaning_level != "tco2_values"),
              aes(lon, lat, fill = "subset")) +
  scale_fill_brewer(palette = "Set1", name = "") +
  facet_grid(cleaning_level ~ era) +
  theme(legend.position = "top",
        axis.title = element_blank())

Past versions of coverage_maps_era_subsetting_era_cleaning_level-1.png

Version	Author	Date
a3006cd	Donghe-Zhu	2021-07-30
a55ffdc	Donghe-Zhu	2021-07-30
d5e4458	Donghe-Zhu	2021-07-30
10a97ef	Donghe-Zhu	2021-07-30
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
d3018f6	Donghe-Zhu	2021-07-28
b8ba2c4	Donghe-Zhu	2021-07-28
a4ddd84	Donghe-Zhu	2021-07-27
7ef49ab	Donghe-Zhu	2021-07-27
da818c0	Donghe-Zhu	2021-07-27
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
d0d97c6	Donghe-Zhu	2021-07-27
829510d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
cac5680	Donghe-Zhu	2021-07-23
9447d10	Donghe-Zhu	2021-07-22
cdc98a3	Donghe-Zhu	2021-07-22
e4805a1	Donghe-Zhu	2021-07-22
b94be4e	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
6f28c0c	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
f2bde6b	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
f2e4805	Donghe-Zhu	2021-07-05
e2d011a	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
6ee0146	Donghe-Zhu	2021-07-05
f59f1b3	Donghe-Zhu	2021-07-05
116bcab	Donghe-Zhu	2021-07-04
cb1c8dc	Donghe-Zhu	2021-07-04
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
b883157	Donghe-Zhu	2021-03-27
d19654d	Donghe-Zhu	2021-03-26
1914a11	Donghe-Zhu	2021-03-24
8be810e	Donghe-Zhu	2021-03-23
3ec9d3d	Donghe-Zhu	2021-03-22
134ace1	Donghe-Zhu	2021-03-22
f6d70a4	Donghe-Zhu	2021-03-22
183443b	Donghe-Zhu	2021-03-21
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
db33928	Donghe-Zhu	2021-03-10
9b7bc66	Donghe-Zhu	2021-03-10
9d5a62c	Donghe-Zhu	2021-03-10
5d1e70b	Donghe-Zhu	2021-03-10
cc2a956	Donghe-Zhu	2021-03-10
17f1c4a	Donghe-Zhu	2021-03-09
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
89c3e58	Donghe-Zhu	2021-03-03
13666ca	Donghe-Zhu	2021-03-01
7a388f7	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
ac9bb7a	Donghe-Zhu	2021-02-28
efdc047	Donghe-Zhu	2021-02-28
19edd1e	Donghe-Zhu	2021-02-27
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
354c224	Donghe-Zhu	2021-02-24
5dce4b1	Donghe-Zhu	2021-02-15
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
af8788e	Donghe-Zhu	2021-01-29
21c91c9	Donghe-Zhu	2021-01-29
eded038	Donghe-Zhu	2021-01-29
541d4dd	Donghe-Zhu	2021-01-29
6a75576	Donghe-Zhu	2021-01-28
c1cec47	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

3.7.2 Final input data

The following plots show the remaining data density in each grid cell after all cleaning steps, separately for each era.

GLODAP_tco2_grid <- GLODAP %>%
  count(lat, lon)

map +
  # geom_raster(data = GLODAP_tco2_grid, aes(lon, lat), fill = "grey80") +
  geom_bin2d(data = GLODAP,
             aes(lon, lat),
             binwidth = c(1,1)) +
  scale_fill_viridis_c(option = "magma", direction = -1, trans = "log10") +
  facet_wrap(~era, ncol = 1) +
  labs(title = "Cleaned GLODAP-based model subsetting",
       subtitle = paste("Version:", params_local$Version_ID)) +
  theme(axis.title = element_blank())

Past versions of coverage_maps_era_clean-1.png

Version	Author	Date
a55ffdc	Donghe-Zhu	2021-07-30
d5e4458	Donghe-Zhu	2021-07-30
10a97ef	Donghe-Zhu	2021-07-30
1c501fd	Donghe-Zhu	2021-07-30
68bce3f	Donghe-Zhu	2021-07-30
400c457	Donghe-Zhu	2021-07-29
d3018f6	Donghe-Zhu	2021-07-28
b8ba2c4	Donghe-Zhu	2021-07-28
a4ddd84	Donghe-Zhu	2021-07-27
7ef49ab	Donghe-Zhu	2021-07-27
da818c0	Donghe-Zhu	2021-07-27
8623898	Donghe-Zhu	2021-07-27
f84b77c	Donghe-Zhu	2021-07-27
70ad9a5	Donghe-Zhu	2021-07-27
0d0b48d	Donghe-Zhu	2021-07-27
d0d97c6	Donghe-Zhu	2021-07-27
829510d	Donghe-Zhu	2021-07-27
780627d	Donghe-Zhu	2021-07-27
e9838c9	Donghe-Zhu	2021-07-27
2777f33	Donghe-Zhu	2021-07-27
d19760f	Donghe-Zhu	2021-07-27
cac5680	Donghe-Zhu	2021-07-23
9447d10	Donghe-Zhu	2021-07-22
cdc98a3	Donghe-Zhu	2021-07-22
e4805a1	Donghe-Zhu	2021-07-22
b94be4e	Donghe-Zhu	2021-07-21
d84a1cb	Donghe-Zhu	2021-07-20
6f28c0c	Donghe-Zhu	2021-07-20
db1e7b7	Donghe-Zhu	2021-07-19
ff0575d	Donghe-Zhu	2021-07-19
5d60eac	Donghe-Zhu	2021-07-19
57d0420	Donghe-Zhu	2021-07-16
c1be8f6	Donghe-Zhu	2021-07-16
26a7c15	Donghe-Zhu	2021-07-16
046902b	Donghe-Zhu	2021-07-16
3d4ac14	Donghe-Zhu	2021-07-15
be6fff9	Donghe-Zhu	2021-07-15
363270a	Donghe-Zhu	2021-07-15
8b75a03	Donghe-Zhu	2021-07-15
bc83ef2	Donghe-Zhu	2021-07-07
f2bde6b	Donghe-Zhu	2021-07-06
ee4cd2d	Donghe-Zhu	2021-07-06
f2e4805	Donghe-Zhu	2021-07-05
85e0349	Donghe-Zhu	2021-07-05
c9bdd83	Donghe-Zhu	2021-07-04
1920ad9	Donghe-Zhu	2021-07-04
0b02791	Donghe-Zhu	2021-06-25
caf62d8	Donghe-Zhu	2021-06-25
b5b95a9	Donghe-Zhu	2021-06-24
472aad4	Donghe-Zhu	2021-06-24
d517836	Donghe-Zhu	2021-06-24
00072e2	Donghe-Zhu	2021-06-23
7431530	Donghe-Zhu	2021-06-20
b0874a2	Donghe-Zhu	2021-06-17
72c2f2e	Donghe-Zhu	2021-06-15
d97dcb6	Donghe-Zhu	2021-06-08
e9b27d7	Donghe-Zhu	2021-06-07
ed89970	Donghe-Zhu	2021-06-07
df37958	Donghe-Zhu	2021-06-07
812bf63	Donghe-Zhu	2021-06-06
65c89c8	Donghe-Zhu	2021-06-06
9baa3b2	Donghe-Zhu	2021-06-06
b7d99cf	Donghe-Zhu	2021-06-06
5d8fa90	Donghe-Zhu	2021-06-06
d50b039	Donghe-Zhu	2021-05-28
b8dbce4	Donghe-Zhu	2021-05-28
9179bfe	Donghe-Zhu	2021-05-27
e377833	Donghe-Zhu	2021-05-26
b883157	Donghe-Zhu	2021-03-27
0c20513	Donghe-Zhu	2021-03-26
d19654d	Donghe-Zhu	2021-03-26
1914a11	Donghe-Zhu	2021-03-24
8be810e	Donghe-Zhu	2021-03-23
3ec9d3d	Donghe-Zhu	2021-03-22
134ace1	Donghe-Zhu	2021-03-22
f6d70a4	Donghe-Zhu	2021-03-22
183443b	Donghe-Zhu	2021-03-21
2e6976b	Donghe-Zhu	2021-03-21
51a42bd	Donghe-Zhu	2021-03-16
f745381	Donghe-Zhu	2021-03-16
aecbf75	Donghe-Zhu	2021-03-14
6733e48	Donghe-Zhu	2021-03-12
ba71e6a	Donghe-Zhu	2021-03-12
9dbf5bd	Donghe-Zhu	2021-03-11
a49df30	Donghe-Zhu	2021-03-11
b3348a5	Donghe-Zhu	2021-03-11
db33928	Donghe-Zhu	2021-03-10
9b7bc66	Donghe-Zhu	2021-03-10
9d5a62c	Donghe-Zhu	2021-03-10
5d1e70b	Donghe-Zhu	2021-03-10
cc2a956	Donghe-Zhu	2021-03-10
17f1c4a	Donghe-Zhu	2021-03-09
627c8fb	Donghe-Zhu	2021-03-07
3607f4d	Donghe-Zhu	2021-03-07
8c1e978	Donghe-Zhu	2021-03-05
865f68c	Donghe-Zhu	2021-03-05
59288fe	Donghe-Zhu	2021-03-04
731abc8	Donghe-Zhu	2021-03-04
e2a5a33	Donghe-Zhu	2021-03-04
c7892c1	Donghe-Zhu	2021-03-04
924430b	Donghe-Zhu	2021-03-03
0d0bca1	Donghe-Zhu	2021-03-03
cb63c16	Donghe-Zhu	2021-03-03
ffda45a	Donghe-Zhu	2021-03-03
89c3e58	Donghe-Zhu	2021-03-03
13666ca	Donghe-Zhu	2021-03-01
7a388f7	Donghe-Zhu	2021-03-01
66ff99f	Donghe-Zhu	2021-03-01
ac9bb7a	Donghe-Zhu	2021-02-28
efdc047	Donghe-Zhu	2021-02-28
19edd1e	Donghe-Zhu	2021-02-27
f20483f	Donghe-Zhu	2021-02-26
6a2c7b3	Donghe-Zhu	2021-02-25
354c224	Donghe-Zhu	2021-02-24
5dce4b1	Donghe-Zhu	2021-02-15
865b582	Donghe-Zhu	2021-01-31
3e68089	Donghe-Zhu	2021-01-31
ecf335c	Donghe-Zhu	2021-01-31
a618965	Donghe-Zhu	2021-01-31
b50fe52	Donghe-Zhu	2021-01-31
ac99ae5	jens-daniel-mueller	2021-01-29
b5bdcaf	Donghe-Zhu	2021-01-29
372adf5	Donghe-Zhu	2021-01-29
af8788e	Donghe-Zhu	2021-01-29
21c91c9	Donghe-Zhu	2021-01-29
eded038	Donghe-Zhu	2021-01-29
541d4dd	Donghe-Zhu	2021-01-29
6a75576	Donghe-Zhu	2021-01-28
c1cec47	Donghe-Zhu	2021-01-25
05ffb0c	Donghe-Zhu	2021-01-25
8b97165	Donghe-Zhu	2021-01-25
c569946	Donghe-Zhu	2021-01-24
4c28e4a	Donghe-Zhu	2021-01-22
24cc264	jens-daniel-mueller	2021-01-22
7891955	Donghe-Zhu	2021-01-21
1f3e5b6	jens-daniel-mueller	2021-01-20
0e7bdf1	jens-daniel-mueller	2021-01-15
4571843	jens-daniel-mueller	2021-01-14
e5cb81a	Donghe-Zhu	2021-01-05
a499f10	Donghe-Zhu	2021-01-05
8fae0b2	Donghe-Zhu	2020-12-21
c8b76b3	jens-daniel-mueller	2020-12-19

ggsave(path = path_version_figures,
       filename = "data_distribution_era.png",
       height = 8,
       width = 5)

Session information

sessionInfo()

R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.2

Matrix products: default
BLAS:   /usr/local/R-4.0.3/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.0.3/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] lubridate_1.7.9 ggforce_0.3.3   metR_0.9.0      scico_1.2.0    
 [5] patchwork_1.1.1 collapse_1.5.0  forcats_0.5.0   stringr_1.4.0  
 [9] dplyr_1.0.5     purrr_0.3.4     readr_1.4.0     tidyr_1.1.2    
[13] tibble_3.0.4    ggplot2_3.3.3   tidyverse_1.3.0 workflowr_1.6.2

loaded via a namespace (and not attached):
 [1] httr_1.4.2               viridisLite_0.3.0        jsonlite_1.7.2          
 [4] here_1.0.1               modelr_0.1.8             assertthat_0.2.1        
 [7] blob_1.2.1               cellranger_1.1.0         yaml_2.2.1              
[10] pillar_1.4.7             backports_1.1.10         lattice_0.20-41         
[13] glue_1.4.2               RcppEigen_0.3.3.9.1      digest_0.6.27           
[16] RColorBrewer_1.1-2       promises_1.1.1           polyclip_1.10-0         
[19] checkmate_2.0.0          rvest_0.3.6              colorspace_2.0-0        
[22] htmltools_0.5.0          httpuv_1.5.4             Matrix_1.2-18           
[25] pkgconfig_2.0.3          broom_0.7.5              haven_2.3.1             
[28] scales_1.1.1             tweenr_1.0.2             whisker_0.4             
[31] later_1.1.0.1            git2r_0.27.1             generics_0.1.0          
[34] farver_2.0.3             ellipsis_0.3.1           withr_2.3.0             
[37] cli_2.2.0                magrittr_2.0.1           crayon_1.3.4            
[40] readxl_1.3.1             evaluate_0.14            fs_1.5.0                
[43] fansi_0.4.1              MASS_7.3-53              xml2_1.3.2              
[46] RcppArmadillo_0.10.1.2.2 tools_4.0.3              data.table_1.13.6       
[49] hms_0.5.3                lifecycle_1.0.0          munsell_0.5.0           
[52] reprex_0.3.0             compiler_4.0.3           rlang_0.4.10            
[55] grid_4.0.3               rstudioapi_0.13          labeling_0.4.2          
[58] rmarkdown_2.5            gtable_0.3.0             DBI_1.1.0               
[61] R6_2.5.0                 knitr_1.30               utf8_1.1.4              
[64] rprojroot_2.0.2          stringi_1.5.3            parallel_4.0.3          
[67] Rcpp_1.0.5               vctrs_0.3.6              dbplyr_1.4.4            
[70] tidyselect_1.1.0         xfun_0.20