Last updated: 2020-12-11
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Knit directory: emlr_obs_preprocessing/
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|---|---|---|---|---|
| html | ae7aa2e | jens-daniel-mueller | 2020-12-11 | Build site. |
| Rmd | ec6f803 | jens-daniel-mueller | 2020-12-11 | apply only lat max but not basinmak |
| html | 914159f | jens-daniel-mueller | 2020-12-11 | Build site. |
| Rmd | 30eb59a | jens-daniel-mueller | 2020-12-11 | created basin masks for analysis |
| html | 9c5d86d | jens-daniel-mueller | 2020-12-11 | Build site. |
| Rmd | 8a8db38 | jens-daniel-mueller | 2020-12-11 | renamed tem to temp |
| html | 5b02360 | jens-daniel-mueller | 2020-12-03 | Build site. |
| Rmd | ac9d747 | jens-daniel-mueller | 2020-12-03 | defined standard and sequence of inventory depth thresholds |
| html | 999cd9d | jens-daniel-mueller | 2020-12-02 | Build site. |
| html | e28cc90 | jens-daniel-mueller | 2020-11-30 | Build site. |
| Rmd | cd676e8 | jens-daniel-mueller | 2020-11-30 | created global parameterization file params_global.rds |
| html | 825309e | jens-daniel-mueller | 2020-11-27 | Build site. |
| html | 58359ac | jens-daniel-mueller | 2020-11-27 | Build site. |
| Rmd | 92e10aa | Jens Müller | 2020-11-27 | Initial commit |
| html | 92e10aa | Jens Müller | 2020-11-27 | Initial commit |
library(tidyverse)path_utilities <- "/nfs/kryo/work/updata/emlr_cant/utilities/"Following global parameterizations were chosen to run all analysis and display results:
depth_levels = c(0, 150, 500, 2000)
depth_levels_33 <- c(
0,
10,
20,
30,
50,
75,
100,
125,
150,
200,
250,
300,
400,
500,
600,
700,
800,
900,
1000,
1100,
1200,
1300,
1400,
1500,
1750,
2000,
2500,
3000,
3500,
4000,
4500,
5000,
5500
)
longitude_sections_basin <- c(335.5, 190.5, 70.5)
longitude_sections_regular <- seq(30.5, 380.5, 20)
params_global <-
lst(
lat_max = 65,
lat_min = -85,
lat_min_SO = -35,
lat_equator = 0,
lon_Atl_section = 335.5,
lon_Pac_section = 190.5,
lon_Ind_section = 70.5,
lat_Atl_profile = 40.5,
lat_section_N = 59.5,
lat_section_S = -59.5,
longitude_sections_basin = longitude_sections_basin,
longitude_sections_regular = longitude_sections_regular,
inventory_depth_standard = 3000,
inventory_depths = c(100, 500, 1000, 3000, 10000),
plotting_depth = 4500,
cruises_meridional = 1041,
depth_levels = depth_levels,
depth_levels_33 = depth_levels_33,
breaks_cant_pos_inv = c(seq(0,16,2),Inf),
breaks_cant_inv = c(-Inf,seq(-16,16,2),Inf),
breaks_cant_inv_offset = c(-Inf, seq(-15, 15, 3), Inf),
breaks_cant_pos = c(seq(0, 18, 1), Inf),
breaks_cant = c(-Inf,seq(-16,16,2),Inf),
breaks_cant_offset = c(-Inf,seq(-8,8,),Inf)
)
params_global$lat_max
[1] 65
$lat_min
[1] -85
$lat_min_SO
[1] -35
$lat_equator
[1] 0
$lon_Atl_section
[1] 335.5
$lon_Pac_section
[1] 190.5
$lon_Ind_section
[1] 70.5
$lat_Atl_profile
[1] 40.5
$lat_section_N
[1] 59.5
$lat_section_S
[1] -59.5
$longitude_sections_basin
[1] 335.5 190.5 70.5
$longitude_sections_regular
[1] 30.5 50.5 70.5 90.5 110.5 130.5 150.5 170.5 190.5 210.5 230.5 250.5
[13] 270.5 290.5 310.5 330.5 350.5 370.5
$inventory_depth_standard
[1] 3000
$inventory_depths
[1] 100 500 1000 3000 10000
$plotting_depth
[1] 4500
$cruises_meridional
[1] 1041
$depth_levels
[1] 0 150 500 2000
$depth_levels_33
[1] 0 10 20 30 50 75 100 125 150 200 250 300 400 500 600
[16] 700 800 900 1000 1100 1200 1300 1400 1500 1750 2000 2500 3000 3500 4000
[31] 4500 5000 5500
$breaks_cant_pos_inv
[1] 0 2 4 6 8 10 12 14 16 Inf
$breaks_cant_inv
[1] -Inf -16 -14 -12 -10 -8 -6 -4 -2 0 2 4 6 8 10
[16] 12 14 16 Inf
$breaks_cant_inv_offset
[1] -Inf -15 -12 -9 -6 -3 0 3 6 9 12 15 Inf
$breaks_cant_pos
[1] 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18
[20] Inf
$breaks_cant
[1] -Inf -16 -14 -12 -10 -8 -6 -4 -2 0 2 4 6 8 10
[16] 12 14 16 Inf
$breaks_cant_offset
[1] -Inf -8 -7 -6 -5 -4 -3 -2 -1 0 1 2 3 4 5
[16] 6 7 8 Infparams_global %>%
write_rds(
paste(path_utilities,
"files/params_global.rds",
sep = "")
)
sessionInfo()R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.1
Matrix products: default
BLAS: /usr/local/R-4.0.3/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.0.3/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] forcats_0.5.0 stringr_1.4.0 dplyr_1.0.2 purrr_0.3.4
[5] readr_1.4.0 tidyr_1.1.2 tibble_3.0.4 ggplot2_3.3.2
[9] tidyverse_1.3.0 workflowr_1.6.2
loaded via a namespace (and not attached):
[1] tidyselect_1.1.0 xfun_0.18 haven_2.3.1 colorspace_2.0-0
[5] vctrs_0.3.5 generics_0.0.2 htmltools_0.5.0 yaml_2.2.1
[9] blob_1.2.1 rlang_0.4.9 later_1.1.0.1 pillar_1.4.7
[13] withr_2.3.0 glue_1.4.2 DBI_1.1.0 dbplyr_1.4.4
[17] modelr_0.1.8 readxl_1.3.1 lifecycle_0.2.0 munsell_0.5.0
[21] gtable_0.3.0 cellranger_1.1.0 rvest_0.3.6 evaluate_0.14
[25] knitr_1.30 httpuv_1.5.4 fansi_0.4.1 broom_0.7.2
[29] Rcpp_1.0.5 promises_1.1.1 backports_1.1.10 scales_1.1.1
[33] jsonlite_1.7.1 fs_1.5.0 hms_0.5.3 digest_0.6.27
[37] stringi_1.5.3 rprojroot_2.0.2 grid_4.0.3 cli_2.2.0
[41] tools_4.0.3 magrittr_2.0.1 crayon_1.3.4 whisker_0.4
[45] pkgconfig_2.0.3 ellipsis_0.3.1 xml2_1.3.2 reprex_0.3.0
[49] lubridate_1.7.9 assertthat_0.2.1 rmarkdown_2.5 httr_1.4.2
[53] rstudioapi_0.13 R6_2.5.0 git2r_0.27.1 compiler_4.0.3