Last updated: 2020-11-30

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Knit directory: emlr_obs_preprocessing/

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File Version Author Date Message
Rmd cd676e8 jens-daniel-mueller 2020-11-30 created global parameterization file params_global.rds
html 825309e jens-daniel-mueller 2020-11-27 Build site.
html 58359ac jens-daniel-mueller 2020-11-27 Build site.
Rmd 2f37595 jens-daniel-mueller 2020-11-27 first rebuild after splitting the preprocessing part
Rmd 92e10aa Jens Müller 2020-11-27 Initial commit
html 92e10aa Jens Müller 2020-11-27 Initial commit

path_functions      <- "/nfs/kryo/work/updata/emlr_cant/utilities/functions/"
path_files          <- "/nfs/kryo/work/updata/emlr_cant/utilities/files/"
path_atm_pCO2    <- "/nfs/kryo/work/updata/atm_pco2_noaa/"
path_preprocessing  <- "/nfs/kryo/work/updata/emlr_cant/observations/preprocessing/"

1 Read data

  • Data source: Globally averaged marine surface annual mean data from ESRL-NOAA
co2_atm <- read_table2(
  paste(path_atm_pCO2,
        "co2_annmean_gl.txt",
        sep = ""),
  col_names = FALSE,
  comment = "#"
)

co2_atm <- co2_atm %>% 
  select(-X3)

names(co2_atm) <- c("year", "pCO2")

2 Time series

co2_atm %>% 
  ggplot(aes(year, pCO2)) +
  geom_path() +
  geom_point()

Version Author Date
58359ac jens-daniel-mueller 2020-11-27
92e10aa Jens Müller 2020-11-27

3 Write clean file

co2_atm %>%
  write_csv(paste(path_preprocessing,
                  "co2_atm.csv",
                  sep = ""))

sessionInfo()
R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.1

Matrix products: default
BLAS:   /usr/local/R-4.0.3/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.0.3/lib64/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] metR_0.9.0      scico_1.2.0     patchwork_1.1.0 collapse_1.4.2 
 [5] forcats_0.5.0   stringr_1.4.0   dplyr_1.0.2     purrr_0.3.4    
 [9] readr_1.4.0     tidyr_1.1.2     tibble_3.0.4    ggplot2_3.3.2  
[13] tidyverse_1.3.0 workflowr_1.6.2

loaded via a namespace (and not attached):
 [1] Rcpp_1.0.5               lubridate_1.7.9          lattice_0.20-41         
 [4] assertthat_0.2.1         rprojroot_1.3-2          digest_0.6.27           
 [7] R6_2.5.0                 cellranger_1.1.0         backports_1.1.10        
[10] reprex_0.3.0             evaluate_0.14            httr_1.4.2              
[13] pillar_1.4.6             rlang_0.4.8              readxl_1.3.1            
[16] data.table_1.13.2        rstudioapi_0.11          whisker_0.4             
[19] blob_1.2.1               Matrix_1.2-18            checkmate_2.0.0         
[22] rmarkdown_2.5            labeling_0.4.2           RcppEigen_0.3.3.7.0     
[25] munsell_0.5.0            broom_0.7.2              compiler_4.0.3          
[28] httpuv_1.5.4             modelr_0.1.8             xfun_0.18               
[31] pkgconfig_2.0.3          htmltools_0.5.0          tidyselect_1.1.0        
[34] fansi_0.4.1              crayon_1.3.4             dbplyr_1.4.4            
[37] withr_2.3.0              later_1.1.0.1            grid_4.0.3              
[40] jsonlite_1.7.1           gtable_0.3.0             lifecycle_0.2.0         
[43] DBI_1.1.0                git2r_0.27.1             magrittr_1.5            
[46] scales_1.1.1             cli_2.1.0                stringi_1.5.3           
[49] farver_2.0.3             fs_1.5.0                 promises_1.1.1          
[52] RcppArmadillo_0.10.1.0.0 xml2_1.3.2               ellipsis_0.3.1          
[55] generics_0.0.2           vctrs_0.3.4              tools_4.0.3             
[58] glue_1.4.2               hms_0.5.3                parallel_4.0.3          
[61] yaml_2.2.1               colorspace_1.4-1         rvest_0.3.6             
[64] knitr_1.30               haven_2.3.1