Last updated: 2021-08-03
Checks: 7 0
Knit directory: emlr_obs_v_XXX/
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 4d7bb5a | jens-daniel-mueller | 2021-08-03 | test rlm model fitting |
| html | a53656d | jens-daniel-mueller | 2021-08-03 | Build site. |
| Rmd | eb00453 | jens-daniel-mueller | 2021-08-03 | test with P predictors, and oxygen, but no P* |
| html | 88f7356 | jens-daniel-mueller | 2021-08-02 | Build site. |
| Rmd | 296fc33 | jens-daniel-mueller | 2021-08-02 | test without P predictors, but oxygen |
| html | d759279 | jens-daniel-mueller | 2021-08-02 | Build site. |
| Rmd | defe32c | jens-daniel-mueller | 2021-08-02 | test without P predictors, but oxygen |
| html | 127b801 | jens-daniel-mueller | 2021-07-24 | Build site. |
| Rmd | 414e9ff | jens-daniel-mueller | 2021-07-24 | test v_201 |
| html | 1f65ef1 | jens-daniel-mueller | 2021-07-23 | Build site. |
| Rmd | 56485c6 | jens-daniel-mueller | 2021-07-23 | rebuild: complete revision |
| html | 912d90e | jens-daniel-mueller | 2021-07-23 | Build site. |
| html | 2477316 | jens-daniel-mueller | 2021-07-23 | rebuild: surface dcant mapping seperate |
| html | c9ccc00 | jens-daniel-mueller | 2021-07-22 | Build site. |
| html | c75b2a0 | jens-daniel-mueller | 2021-07-22 | Build site. |
| Rmd | 7d6951d | jens-daniel-mueller | 2021-07-22 | surface dcant mapping seperate |
| html | 426b2df | jens-daniel-mueller | 2021-07-21 | Build site. |
| html | 78fe930 | jens-daniel-mueller | 2021-07-21 | Build site. |
| Rmd | ee0e941 | jens-daniel-mueller | 2021-07-21 | surface dcant mapping with preformed DIC |
| Rmd | 3ef0100 | jens-daniel-mueller | 2021-07-13 | complete revision |
| html | 971ce87 | jens-daniel-mueller | 2021-07-13 | Build site. |
| Rmd | 89d9fcb | jens-daniel-mueller | 2021-07-13 | complete revision |
| html | c18a8b1 | jens-daniel-mueller | 2021-07-09 | Build site. |
| Rmd | 795a3b0 | jens-daniel-mueller | 2021-07-09 | complete revision |
| html | 910d64a | jens-daniel-mueller | 2021-07-02 | Build site. |
| html | 1cbf907 | jens-daniel-mueller | 2021-07-02 | Build site. |
| Rmd | a2c1536 | jens-daniel-mueller | 2021-07-02 | testrun with CANYON-B NA filling |
| html | 749d84e | jens-daniel-mueller | 2021-06-30 | Build site. |
| Rmd | 7fa4dbd | jens-daniel-mueller | 2021-06-30 | added histogram |
| html | 955f5dc | jens-daniel-mueller | 2021-06-29 | Build site. |
| Rmd | b7747bd | jens-daniel-mueller | 2021-06-29 | update standard configuration |
| html | 9480f94 | jens-daniel-mueller | 2021-06-29 | Build site. |
| html | d054c39 | jens-daniel-mueller | 2021-06-24 | Build site. |
| Rmd | ce91a31 | jens-daniel-mueller | 2021-06-24 | test with merged slabs |
| html | 87e2739 | jens-daniel-mueller | 2021-06-24 | Build site. |
| Rmd | 6e94317 | jens-daniel-mueller | 2021-06-24 | test coarse grid rarefication |
| html | 4fcd066 | jens-daniel-mueller | 2021-06-24 | Build site. |
| Rmd | ee48dee | jens-daniel-mueller | 2021-06-24 | test coarse grid rarefication |
| html | b960d93 | jens-daniel-mueller | 2021-06-24 | Build site. |
| Rmd | 79ecdc5 | jens-daniel-mueller | 2021-06-24 | add observation grid to map |
| html | 00dcc97 | jens-daniel-mueller | 2021-06-23 | Build site. |
| Rmd | 891392a | jens-daniel-mueller | 2021-06-23 | revised bias labels |
| html | 3b6387f | jens-daniel-mueller | 2021-06-18 | Build site. |
| html | 3052a6c | jens-daniel-mueller | 2021-06-15 | Build site. |
| html | 3cb64bd | jens-daniel-mueller | 2021-06-15 | Build site. |
| html | c6b3da6 | jens-daniel-mueller | 2021-06-14 | Build site. |
| html | 48c73fc | jens-daniel-mueller | 2021-06-14 | Build site. |
| html | 439ee80 | jens-daniel-mueller | 2021-06-11 | Build site. |
| html | 33ffcab | jens-daniel-mueller | 2021-06-10 | Build site. |
| html | 7e1f407 | jens-daniel-mueller | 2021-06-10 | Build site. |
| html | 2cbe18c | jens-daniel-mueller | 2021-06-10 | added zonal mean section control plots |
| html | 69c79d0 | jens-daniel-mueller | 2021-06-08 | Build site. |
| html | 1772903 | jens-daniel-mueller | 2021-06-07 | Build site. |
| html | 594ed9a | jens-daniel-mueller | 2021-06-04 | Build site. |
| html | db7df0e | jens-daniel-mueller | 2021-06-04 | rebuild without overlapping eras |
| Rmd | 71f97a3 | jens-daniel-mueller | 2021-06-04 | rebuild without overlapping eras |
| html | 2edc791 | jens-daniel-mueller | 2021-06-04 | Build site. |
| html | 207339d | jens-daniel-mueller | 2021-06-03 | Build site. |
| html | 315710b | jens-daniel-mueller | 2021-06-03 | include anomalous changes |
| html | be90356 | jens-daniel-mueller | 2021-06-02 | Build site. |
| Rmd | 12eeaa6 | jens-daniel-mueller | 2021-06-02 | test run with beta version of GLODAPv2.2021 |
| html | d37a85d | jens-daniel-mueller | 2021-05-31 | Build site. |
| Rmd | 1c2aff8 | jens-daniel-mueller | 2021-05-31 | test run with beta version of GLODAPv2.2021 |
| html | 4b7a5ee | jens-daniel-mueller | 2021-05-28 | Build site. |
| Rmd | a61014f | jens-daniel-mueller | 2021-05-28 | test run with cstar target variable |
| html | 12b455a | jens-daniel-mueller | 2021-05-27 | Build site. |
| Rmd | ee13efb | jens-daniel-mueller | 2021-05-27 | optional source of local params fully implemented |
| html | 8c736a6 | jens-daniel-mueller | 2021-05-27 | Build site. |
| html | 25bd183 | jens-daniel-mueller | 2021-05-26 | Build site. |
| Rmd | e2b3434 | jens-daniel-mueller | 2021-05-26 | generate seperate output |
| html | 5fe3035 | jens-daniel-mueller | 2021-05-26 | Build site. |
| html | 4c5302d | jens-daniel-mueller | 2021-05-26 | Build site. |
| html | 189f362 | jens-daniel-mueller | 2021-05-26 | Build site. |
| html | f314fc7 | jens-daniel-mueller | 2021-05-26 | Build site. |
| html | cf773c5 | jens-daniel-mueller | 2021-05-26 | Build site. |
| Rmd | 5b0e29c | jens-daniel-mueller | 2021-05-26 | generate seperate output |
| html | b79cb2d | jens-daniel-mueller | 2021-05-20 | Build site. |
| html | 62bd574 | jens-daniel-mueller | 2021-05-20 | Build site. |
| Rmd | 14a7aac | jens-daniel-mueller | 2021-05-20 | rerun overlapping eras |
| html | 7c56c39 | jens-daniel-mueller | 2021-05-19 | Build site. |
| html | 0de759e | jens-daniel-mueller | 2021-05-13 | Build site. |
| html | 0a84f2a | jens-daniel-mueller | 2021-05-12 | Build site. |
| html | 969e631 | jens-daniel-mueller | 2021-05-12 | Build site. |
| html | d2a83bc | jens-daniel-mueller | 2021-04-16 | Build site. |
| html | 84b1fe3 | jens-daniel-mueller | 2021-04-16 | Build site. |
| Rmd | d6b0b34 | jens-daniel-mueller | 2021-04-16 | use consistent tref |
| html | c0a47df | jens-daniel-mueller | 2021-04-16 | Build site. |
| html | 50290e8 | jens-daniel-mueller | 2021-04-16 | overlapping eras |
| Rmd | 934e795 | jens-daniel-mueller | 2021-04-16 | overlapping eras |
| html | a00ec94 | jens-daniel-mueller | 2021-04-16 | Build site. |
| html | 7e4f671 | jens-daniel-mueller | 2021-04-16 | Build site. |
| html | b6fe355 | jens-daniel-mueller | 2021-04-16 | Build site. |
| html | 97d2272 | jens-daniel-mueller | 2021-04-16 | Build site. |
| Rmd | f70f4dc | jens-daniel-mueller | 2021-04-16 | regular eras |
| html | 81b7c6d | jens-daniel-mueller | 2021-04-16 | Build site. |
| Rmd | 0b33708 | jens-daniel-mueller | 2021-04-16 | deep Pacific slabs |
| html | ddec5b7 | jens-daniel-mueller | 2021-04-15 | Build site. |
| Rmd | 7084d27 | jens-daniel-mueller | 2021-04-15 | overlapping breakpoints |
| html | 29edae5 | jens-daniel-mueller | 2021-04-14 | Build site. |
| Rmd | 3ab8145 | jens-daniel-mueller | 2021-04-14 | 2008 breakpoint |
| html | 099d566 | jens-daniel-mueller | 2021-04-14 | Build site. |
| Rmd | e76af46 | jens-daniel-mueller | 2021-04-14 | 2 basins, high VIF |
| html | bb44686 | jens-daniel-mueller | 2021-04-14 | Build site. |
| Rmd | 6fcc01e | jens-daniel-mueller | 2021-04-14 | AIP basins, low VIF |
| html | bf40480 | jens-daniel-mueller | 2021-04-13 | Build site. |
| Rmd | fdb5a55 | jens-daniel-mueller | 2021-04-13 | deeper slabs in Ind_Pac, higher VIF |
| html | 9f31fe3 | jens-daniel-mueller | 2021-04-13 | Build site. |
| Rmd | 80e1ee3 | jens-daniel-mueller | 2021-04-13 | rerun post-2000 with model data |
| html | c98be84 | jens-daniel-mueller | 2021-04-13 | Build site. |
| html | 338dd3c | jens-daniel-mueller | 2021-04-09 | Build site. |
| html | a79ca2c | jens-daniel-mueller | 2021-04-09 | included model data |
| html | 7831fd3 | jens-daniel-mueller | 2021-04-09 | Build site. |
| html | 20b26d4 | jens-daniel-mueller | 2021-04-08 | Build site. |
| html | c0895f8 | jens-daniel-mueller | 2021-04-07 | Build site. |
| html | 156d5b7 | jens-daniel-mueller | 2021-04-07 | Build site. |
| html | eb827c9 | jens-daniel-mueller | 2021-04-07 | Build site. |
| html | 857bad3 | jens-daniel-mueller | 2021-03-24 | Build site. |
| html | 03b6009 | jens-daniel-mueller | 2021-03-23 | removed before copying template |
| html | 555750f | jens-daniel-mueller | 2021-03-23 | Build site. |
| Rmd | 2021931 | jens-daniel-mueller | 2021-03-23 | restriction to two eras and new definition procedure |
| html | 685338e | jens-daniel-mueller | 2021-03-23 | Build site. |
| Rmd | 64b4756 | jens-daniel-mueller | 2021-03-23 | restriction to two eras and new definition procedure |
| html | 886f523 | jens-daniel-mueller | 2021-03-23 | Build site. |
| Rmd | 8a3a9dd | jens-daniel-mueller | 2021-03-23 | restriction to two eras and new definition procedure |
| html | 10c1346 | jens-daniel-mueller | 2021-03-23 | Build site. |
| Rmd | b697e7a | jens-daniel-mueller | 2021-03-23 | restriction to two eras and new definition procedure |
| html | f155edd | jens-daniel-mueller | 2021-03-23 | Build site. |
| Rmd | 6601b92 | jens-daniel-mueller | 2021-03-23 | rerun w/o post 2012 era |
| html | 380d215 | jens-daniel-mueller | 2021-03-21 | Build site. |
| Rmd | 30ed6c6 | jens-daniel-mueller | 2021-03-21 | rerun with stronger vif threshold |
| html | 33b385b | jens-daniel-mueller | 2021-03-20 | Build site. |
| html | 108d6b2 | jens-daniel-mueller | 2021-03-20 | Build site. |
| Rmd | 2b99ba0 | jens-daniel-mueller | 2021-03-20 | included vif removel option |
| html | 330dcd0 | jens-daniel-mueller | 2021-03-20 | Build site. |
| html | 83a13de | jens-daniel-mueller | 2021-03-20 | Build site. |
| Rmd | fdd3c0a | jens-daniel-mueller | 2021-03-20 | re-run standard slabs |
| html | cf98c6d | jens-daniel-mueller | 2021-03-16 | Build site. |
| Rmd | a9930ea | jens-daniel-mueller | 2021-03-16 | one thick slab |
| html | a1d52ff | jens-daniel-mueller | 2021-03-15 | Build site. |
| Rmd | 7e351c0 | jens-daniel-mueller | 2021-03-15 | re-run with quality filters and new eras |
| html | 0bade3b | jens-daniel-mueller | 2021-03-15 | Build site. |
| Rmd | 9ebb3f2 | jens-daniel-mueller | 2021-03-15 | re-run without quality filters |
| html | 27c1f4b | jens-daniel-mueller | 2021-03-14 | Build site. |
| Rmd | 381eb8e | jens-daniel-mueller | 2021-03-14 | re-run with quality filters |
| html | af75ebf | jens-daniel-mueller | 2021-03-14 | Build site. |
| Rmd | e3dde84 | jens-daniel-mueller | 2021-03-14 | test without filtering |
| html | 5017709 | jens-daniel-mueller | 2021-03-11 | Build site. |
| Rmd | 7a953b4 | jens-daniel-mueller | 2021-03-11 | test with weak filtering |
| html | 585b07f | jens-daniel-mueller | 2021-03-11 | Build site. |
| Rmd | f568b8e | jens-daniel-mueller | 2021-03-11 | cleaned cstar filtering |
| html | 6482ed7 | jens-daniel-mueller | 2021-03-11 | Build site. |
| Rmd | 0ad56e3 | jens-daniel-mueller | 2021-03-11 | cleaned filtering based on comparison to CANYON-B |
| html | 85a5ed2 | jens-daniel-mueller | 2021-03-10 | Build site. |
| html | 52a5ea4 | jens-daniel-mueller | 2021-03-10 | Build site. |
| html | 6b260df | jens-daniel-mueller | 2021-03-10 | Build site. |
| html | 00688a1 | jens-daniel-mueller | 2021-03-05 | Build site. |
| html | 6c0bec6 | jens-daniel-mueller | 2021-03-05 | Build site. |
| html | 3c2ec33 | jens-daniel-mueller | 2021-03-05 | Build site. |
| html | af70b94 | jens-daniel-mueller | 2021-03-04 | Build site. |
| html | 86406d5 | jens-daniel-mueller | 2021-02-24 | Build site. |
| html | 3d3b4cc | jens-daniel-mueller | 2021-02-23 | Build site. |
| html | 7b672f7 | jens-daniel-mueller | 2021-01-11 | Build site. |
| Rmd | ba7cb46 | jens-daniel-mueller | 2021-01-11 | run sensitivity test |
| html | 33ba23c | jens-daniel-mueller | 2021-01-07 | Build site. |
| Rmd | 0ad30ba | jens-daniel-mueller | 2021-01-07 | removed GLODAP gamma filter, target variable mapped by eras+era |
| Rmd | a8c4dce | jens-daniel-mueller | 2020-12-23 | manual activation of A16 switch |
| Rmd | cfef575 | jens-daniel-mueller | 2020-12-23 | Option to select era shift of A16 cruise |
| Rmd | 31b2f90 | jens-daniel-mueller | 2020-12-23 | corrected predictor label |
| Rmd | f489bc9 | jens-daniel-mueller | 2020-12-23 | switched back to regular predictors |
| html | 318609d | jens-daniel-mueller | 2020-12-23 | adapted more variable predictor selection |
| html | 6949b06 | jens-daniel-mueller | 2020-12-23 | Build site. |
| Rmd | d3ad704 | jens-daniel-mueller | 2020-12-23 | test 106 |
| Rmd | 16fa143 | jens-daniel-mueller | 2020-12-23 | changed standard config parameters in template |
| html | 0aa2b50 | jens-daniel-mueller | 2020-12-23 | remove html before duplication |
| html | 39113c3 | jens-daniel-mueller | 2020-12-23 | Build site. |
| html | 2886da0 | jens-daniel-mueller | 2020-12-19 | Build site. |
| html | 02f0ee9 | jens-daniel-mueller | 2020-12-18 | cleaned up for copying template |
| html | 965dba3 | jens-daniel-mueller | 2020-12-18 | Build site. |
| html | 5d452fe | jens-daniel-mueller | 2020-12-18 | Build site. |
| Rmd | ca65bf5 | jens-daniel-mueller | 2020-12-18 | rebuild after final cleaning |
| html | 7bcb4eb | jens-daniel-mueller | 2020-12-18 | Build site. |
| html | d397028 | jens-daniel-mueller | 2020-12-18 | Build site. |
| html | 7131186 | jens-daniel-mueller | 2020-12-17 | Build site. |
| html | 22b07fb | jens-daniel-mueller | 2020-12-17 | Build site. |
| html | a84ff3c | jens-daniel-mueller | 2020-12-17 | Build site. |
| Rmd | 40369db | jens-daniel-mueller | 2020-12-17 | model selection criterion added |
| html | f3a708f | jens-daniel-mueller | 2020-12-17 | Build site. |
| html | e4ca289 | jens-daniel-mueller | 2020-12-16 | Build site. |
| html | 158fe26 | jens-daniel-mueller | 2020-12-15 | Build site. |
| html | 7a9a4cb | jens-daniel-mueller | 2020-12-15 | Build site. |
| Rmd | d234226 | jens-daniel-mueller | 2020-12-15 | rebuild with cstar_tref |
| html | 61b263c | jens-daniel-mueller | 2020-12-15 | Build site. |
| Rmd | 48e9693 | jens-daniel-mueller | 2020-12-15 | test with target variable tco2 |
| html | 4d612dd | jens-daniel-mueller | 2020-12-15 | Build site. |
| Rmd | e7e5ff1 | jens-daniel-mueller | 2020-12-15 | rebuild with eMLR target variable selection |
| html | 953caf3 | jens-daniel-mueller | 2020-12-15 | Build site. |
| Rmd | 97dd0d6 | jens-daniel-mueller | 2020-12-14 | enabled auto path creation |
| html | 42daf5c | jens-daniel-mueller | 2020-12-14 | Build site. |
| html | 5cc68e2 | jens-daniel-mueller | 2020-12-14 | Build site. |
| Rmd | 00de567 | jens-daniel-mueller | 2020-12-14 | rebuild with new path |
| html | 984697e | jens-daniel-mueller | 2020-12-12 | Build site. |
| Rmd | 7648dbc | jens-daniel-mueller | 2020-12-12 | test 3 basins for MLR |
| html | 3ebff89 | jens-daniel-mueller | 2020-12-12 | Build site. |
| Rmd | a1aaa71 | jens-daniel-mueller | 2020-12-12 | selectable basinmask, rebuild |
| html | 7d82772 | jens-daniel-mueller | 2020-12-11 | Build site. |
| html | c8acfcb | jens-daniel-mueller | 2020-12-11 | Build site. |
| Rmd | 24e2c07 | jens-daniel-mueller | 2020-12-11 | selectable basinmask, try 5 |
| html | 2fd0a2a | jens-daniel-mueller | 2020-12-11 | Build site. |
| Rmd | cd436c1 | jens-daniel-mueller | 2020-12-11 | selectable basinmask |
| html | 7788175 | jens-daniel-mueller | 2020-12-09 | Build site. |
| Rmd | 64b795c | jens-daniel-mueller | 2020-12-09 | added histograms after data preparation |
| html | b01a367 | jens-daniel-mueller | 2020-12-09 | Build site. |
| Rmd | 71c63b0 | jens-daniel-mueller | 2020-12-09 | rerun with variable predictor assignment |
| html | 24a632f | jens-daniel-mueller | 2020-12-07 | Build site. |
| Rmd | 6f8a606 | jens-daniel-mueller | 2020-12-07 | rerun standard config |
| html | 92dca91 | jens-daniel-mueller | 2020-12-07 | Build site. |
| html | 6a8004b | jens-daniel-mueller | 2020-12-07 | Build site. |
| Rmd | a4ec6a0 | jens-daniel-mueller | 2020-12-07 | Keppler comparison run |
| html | 70bf1a5 | jens-daniel-mueller | 2020-12-07 | Build site. |
| Rmd | fe4f9b0 | jens-daniel-mueller | 2020-12-07 | run standard config |
| html | 7555355 | jens-daniel-mueller | 2020-12-07 | Build site. |
| Rmd | 263f926 | jens-daniel-mueller | 2020-12-07 | run with qc flag alos 0 |
| html | 143d6fa | jens-daniel-mueller | 2020-12-07 | Build site. |
| Rmd | 33b1973 | jens-daniel-mueller | 2020-12-07 | run with WOCE flag 2 only |
| html | 3c8a83c | jens-daniel-mueller | 2020-12-04 | Build site. |
| html | abc6818 | jens-daniel-mueller | 2020-12-03 | Build site. |
| Rmd | 992ba15 | jens-daniel-mueller | 2020-12-03 | rebuild with variable inventory depth |
| html | 090e4d5 | jens-daniel-mueller | 2020-12-02 | Build site. |
| html | 37e9dac | jens-daniel-mueller | 2020-12-02 | Build site. |
| html | 7c25f7a | jens-daniel-mueller | 2020-12-02 | Build site. |
| Rmd | 5ffd065 | jens-daniel-mueller | 2020-12-02 | rebuild with nice era labels |
| html | 22b2b8e | jens-daniel-mueller | 2020-12-02 | Build site. |
| Rmd | fb05352 | jens-daniel-mueller | 2020-12-02 | editorial changes |
| html | ec8dc38 | jens-daniel-mueller | 2020-12-02 | Build site. |
| html | c987de1 | jens-daniel-mueller | 2020-12-02 | Build site. |
| html | 632c84f | jens-daniel-mueller | 2020-12-02 | Build site. |
| Rmd | 8f3d29d | jens-daniel-mueller | 2020-12-02 | code cleaning and commenting |
| html | 148f0f4 | jens-daniel-mueller | 2020-12-01 | Build site. |
| Rmd | 728d584 | jens-daniel-mueller | 2020-12-01 | unabled all plots generation |
| html | 22d0127 | jens-daniel-mueller | 2020-12-01 | Build site. |
| Rmd | 3c7ddc8 | jens-daniel-mueller | 2020-12-01 | rebuild with flexible eras, A16 shifted and all plots = y |
| html | 0ff728b | jens-daniel-mueller | 2020-12-01 | Build site. |
| Rmd | 6287a18 | jens-daniel-mueller | 2020-12-01 | auto eras naming |
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The following local parametrisations (i.e. relevant for this sensitivity run) were defined to run the analysis:
# neutral density thresholds to cut the Atlantic ocean into slabs
slabs_Atl <-
c(
-Inf,
26.00,
26.50,
26.75,
27.00,
27.25,
27.50,
27.75,
27.85,
27.95,
28.05,
28.10,
28.15,
28.20,
Inf
)
# neutral density thresholds to cut the Indo-Pacific ocean into slabs
slabs_Ind_Pac <-
c(-Inf,
26.00,
26.50,
26.75,
27.00,
27.25,
27.50,
27.75,
27.85,
27.95,
28.05,
28.10,
28.20,
28.30,
28.40,
Inf)
# Predictors for MLR model
MLR_predictors <- c(
"sal",
"temp",
"aou",
"oxygen",
"nitrate",
"silicate",
"phosphate")
params_local <-
lst(
# ID of current sensitivity run
Version_ID = "v_XXX",
# GLODAP version used
GLODAPv2_version = "2021",
# f flags accepted for GLODAP data
flag_f = c(0,2,9),
# qc flags accepted for GLODAP data
flag_qc = c(1,0),
# Shallowest depth for data to be included in MLR fitting
depth_min = 100,
# Shallowest water depth for data to be included in MLR fitting
bottomdepth_min = 0,
# Lowest neutral density to map dcant with eMLR approach
gamma_min = 26,
# CANYON-B offset threshold
# (factor applied to standard deviation of all cruise offsets)
CANYON_B_max = 10,
# break years for eras, numbers indicate the upper end of the respective era
c_star_rmse_max = 50,
# start years for eras
era_start = c(2000, 2010),
# end years for eras
era_end = c(2009, 2019),
# manually define tref1, set to NULL to use median year
tref1 = 2004,
# manually define tref2, set to NULL to use median year
tref2 = 2014,
# ID for basins for MLR fits (options: "2", "AIP", "5", "SO")
MLR_basins = "AIP",
# gap filling of NA values in GLODAP
gap_filling = "CANYON-B",
# rarefication approach
rarefication = "coarse_grid",
# rarefication approach threshold
rarefication_threshold = 25,
# Select the target variable for MLR, either "tco2", "cstar" or "cstar_tref"
MLR_target = "cstar_tref",
# see above
MLR_predictors = MLR_predictors,
# Maxmimum number of MLR predictors
MLR_predictors_max = 5,
# Minimum number of MLR predictors
MLR_predictors_min = 2,
# Total number of MLR fits taken into account
MLR_number = 10,
# function used to fit linear regression models: "lm", "rlm"
MLR_function = "rlm",
# Maximum VIF of fitted MLR models to be included
vif_max = 500,
# Criterion to select best MLR fits, either "rmse" or "aic"
MLR_criterion = "rmse",
# see above
slabs_Atl = slabs_Atl,
# see above
slabs_Ind_Pac = slabs_Ind_Pac,
# nutrient for cstar calculation
cstar_nutrient = "phosphate",
# Stoichiometric ratio of C to P
rCP = 117,
# Stoichiometric ratio of N to P
rNP = 16,
# Stoichiometric ratio of P to O (PO4* calculation)
rPO = 170,
# Offset P to O (PO4* calculation)
rPO_offset = 1.95,
# Preindustrial atmospheric pCO2
preind_atm_pCO2 = 280,
# generate a high number of diagnostic plots while running the analysis (y/n)
plot_all_figures = "n"
)# neutral density thresholds to cut the Atlantic ocean into slabs
slabs_Atl <-
c(
-Inf,
26.00,
26.50,
26.75,
27.00,
27.25,
27.50,
27.75,
27.85,
27.95,
28.05,
28.10,
28.15,
28.20,
Inf
)
# neutral density thresholds to cut the Indo-Pacific ocean into slabs
slabs_Ind_Pac <-
c(-Inf,
26.00,
26.50,
26.75,
27.00,
27.25,
27.50,
27.75,
27.85,
27.95,
28.05,
28.10,
28.20,
28.30,
28.40,
Inf)
# Predictors for MLR model
MLR_predictors <- c(
"sal",
"temp",
"aou",
"nitrate",
"silicate",
"phosphate",
"phosphate_star")
params_local <-
lst(
# ID of current sensitivity run
Version_ID = "v_214",
# GLODAP version used
GLODAPv2_version = "2021",
# f flags accepted for GLODAP data
flag_f = c(0,2,9),
# qc flags accepted for GLODAP data
flag_qc = c(1,0),
# Shallowest depth for data to be included in MLR fitting
depth_min = 150,
# Shallowest water depth for data to be included in MLR fitting
bottomdepth_min = 0,
# Lowest neutral density to map dcant with eMLR approach
gamma_min = 26,
# CANYON-B offset threshold
# (factor applied to standard deviation of all cruise offsets)
CANYON_B_max = 10,
# break years for eras, numbers indicate the upper end of the respective era
c_star_rmse_max = 50,
# start years for eras
era_start = c(1982, 2000),
# end years for eras
era_end = c(1999, 2009),
# manually define tref1, set to NULL to use median year
tref1 = 1994,
# manually define tref2, set to NULL to use median year
tref2 = 2004,
# ID for basins for MLR fits (options: "2", "AIP", "5", "SO")
MLR_basins = "SO",
# gap filling of NA values in GLODAP
gap_filling = "none",
# rarefication approach
rarefication = "coarse_grid",
# rarefication approach threshold
rarefication_threshold = 25,
# Select the target variable for MLR, either "tco2", "cstar" or "cstar_tref"
MLR_target = "cstar_tref",
# see above
MLR_predictors = MLR_predictors,
# Maxmimum number of MLR predictors
MLR_predictors_max = 5,
# Minimum number of MLR predictors
MLR_predictors_min = 2,
# Total number of MLR fits taken into account
MLR_number = 10,
# Maximum VIF of fitted MLR models to be included
vif_max = 500,
# Criterion to select best MLR fits, either "rmse" or "aic"
MLR_criterion = "rmse",
# see above
slabs_Atl = slabs_Atl,
# see above
slabs_Ind_Pac = slabs_Ind_Pac,
# nutrient for cstar calculation
cstar_nutrient = "phosphate",
# Stoichiometric ratio of C to P
rCP = 117,
# Stoichiometric ratio of N to P
rNP = 16,
# Stoichiometric ratio of P to O (PO4* calculation)
rPO = 170,
# Offset P to O (PO4* calculation)
rPO_offset = 1.95,
# Preindustrial atmospheric pCO2
preind_atm_pCO2 = 280,
# generate a high number of diagnostic plots while running the analysis (y/n)
plot_all_figures = "n"
)library(tidyverse)
expand_grid(version = c("GLO", "DAP"),
year = c(2021, 2022),
era = seq(23,25,1),
pred = c(MLR_predictors, MLR_predictors))
params_local %>%
cross()
hoist()Folders for each new sensitivity run are automatically created.
Parametrisation criteria are locally stored and used throughout this sensitivity case.
params_local %>%
write_rds(here::here("data/auxillary",
"params_local.rds"))
sessionInfo()R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: openSUSE Leap 15.2
Matrix products: default
BLAS: /usr/local/R-4.0.3/lib64/R/lib/libRblas.so
LAPACK: /usr/local/R-4.0.3/lib64/R/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] forcats_0.5.0 stringr_1.4.0 dplyr_1.0.5 purrr_0.3.4
[5] readr_1.4.0 tidyr_1.1.2 tibble_3.0.4 ggplot2_3.3.3
[9] tidyverse_1.3.0 workflowr_1.6.2
loaded via a namespace (and not attached):
[1] tidyselect_1.1.0 xfun_0.18 haven_2.3.1 colorspace_1.4-1
[5] vctrs_0.3.5 generics_0.0.2 htmltools_0.5.0 yaml_2.2.1
[9] blob_1.2.1 rlang_0.4.10 later_1.1.0.1 pillar_1.4.7
[13] withr_2.3.0 glue_1.4.2 DBI_1.1.0 dbplyr_1.4.4
[17] readxl_1.3.1 modelr_0.1.8 lifecycle_1.0.0 cellranger_1.1.0
[21] munsell_0.5.0 gtable_0.3.0 rvest_0.3.6 evaluate_0.14
[25] knitr_1.30 httpuv_1.5.4 fansi_0.4.1 broom_0.7.5
[29] Rcpp_1.0.5 promises_1.1.1 backports_1.1.10 scales_1.1.1
[33] jsonlite_1.7.1 fs_1.5.0 hms_0.5.3 digest_0.6.27
[37] stringi_1.5.3 rprojroot_2.0.2 grid_4.0.3 here_0.1
[41] cli_2.1.0 tools_4.0.3 magrittr_1.5 crayon_1.3.4
[45] whisker_0.4 pkgconfig_2.0.3 ellipsis_0.3.1 xml2_1.3.2
[49] reprex_0.3.0 lubridate_1.7.9 assertthat_0.2.1 rmarkdown_2.5
[53] httr_1.4.2 rstudioapi_0.11 R6_2.5.0 git2r_0.27.1
[57] compiler_4.0.3