Last updated: 2020-08-12

Checks: 2 0

Knit directory: jesslyn_ovca/analysis/

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R Markdown file: up-to-date

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Repository version: b5bbe6d

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Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.DS_Store
    Ignored:    code/.DS_Store
    Ignored:    data/.DS_Store
    Ignored:    data/HTAPP/
    Ignored:    data/Izar_2020/
    Ignored:    data/gene_lists/.DS_Store
    Ignored:    data/gene_lists/cellcycle/.DS_Store
    Ignored:    data/gene_lists/extra/.DS_Store
    Ignored:    jesslyn_plots/
    Ignored:    mike_plots/
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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html 84edf85 jgoh2 2020-08-12 Build site.
html a3ddf54 jgoh2 2020-08-07 Build site.
html d801a7a jgoh2 2020-08-04 Build site.
html 26f64a3 jgoh2 2020-08-03 Build site.
html 2dc1bee jgoh2 2020-07-31 Build site.
Rmd 284aad4 jgoh2 2020-07-31 workflowr::wflow_publish(files = files)
html 5c5305b jgoh2 2020-07-30 Build site.
Rmd c8bb9fc jgoh2 2020-07-30 PDX Exploratory + DE + Cell Cycle Analyses
html 6be6c85 jgoh2 2020-07-28 Build site.
Rmd cdd10f9 jgoh2 2020-07-28 SS2 DE Analysis
html cdd10f9 jgoh2 2020-07-28 SS2 DE Analysis
html 35c7947 jgoh2 2020-07-27 SS2 Analysis Part 1 and 2
html f1acd7b jgoh2 2020-07-24 Move PDX_choices.Rmd to old
Rmd 2b6116d Mike Cuoco 2020-07-24 added 03.1_Izar2020_PDX_DEAnalysis
html 0058815 Mike Cuoco 2020-07-15 Build site.
html a526dc6 Mike Cuoco 2020-07-15 add workflowr website
Rmd 086db99 Mike Cuoco 2020-07-15 add project description
Rmd e407c2d Mike Cuoco 2020-07-14 Start workflowr project.

Project Overview

The purpose of this project is to identify gene expression signatures from ovarian cancer RNA-seq data that are associated with a drug tolerant state that is characteristic of cancer persister cells.

  1. A summary of the data from Izar 2020 et al.
  2. PDX Data Analysis
    1. PDX Exploratory analysis
    2. PDX DE analysis
    3. PDX Cell Cycle analysis
  3. SS2 Data Analysis
    1. SS2 Exploratory analysis
    2. SS2 DE analysis
    3. SS2 Cell Cycle analysis

Credits

Developed by Jesslyn Goh and Mike Cuoco