Last updated: 2019-02-15

workflowr checks: (Click a bullet for more information)

• ✖ R Markdown file: uncommitted changes

  The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

• ✔ Repository version: 1fc0c94

  Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.
  
  Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

  
  Ignored files:
      Ignored:    .Rhistory
      Ignored:    Makefile
      Ignored:    analysis/flash_cache/
      Ignored:    data/.DS_Store
      Ignored:    data/raw/
      Ignored:    output/admixture/
      Ignored:    output/flash_backfit/
      Ignored:    output/flash_greedy/
      Ignored:    output/softImpute/
  
  Untracked files:
      Untracked:  analysis/hoa_weurasia.Rmd
      Untracked:  code/viz.R
      Untracked:  docs/figure/hoa_global.Rmd/
      Untracked:  docs/figure/hoa_weurasia.Rmd/
  
  Unstaged changes:
      Modified:   analysis/flash.Rmd
      Modified:   analysis/hoa_global.Rmd
      Modified:   analysis/index.Rmd
      Modified:   data/meta/HumanOriginsPublic2068_weurasia_maf_geno.meta
      Modified:   data/meta/HumanOriginsPublic2068_weurasia_maf_geno_ldprune.meta
  
  

  Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

Expand here to see past versions:

File	Version	Author	Date	Message
html	31a16c6	jhmarcus	2019-02-14	added hists of factors
html	9538510	jhmarcus	2019-02-13	switched to struct style plot
html	63c2b75	jhmarcus	2019-02-13	added softimpute
html	7b6ecbc	jhmarcus	2019-02-12	made fig size bigger
Rmd	5c0f91a	jhmarcus	2019-02-12	init flash proof of principle
html	5c0f91a	jhmarcus	2019-02-12	init flash proof of principle
Rmd	46105ee	jhmarcus	2019-02-11	Start workflowr project.

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Welcome to my research website.

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This reproducible R Markdown analysis was created with workflowr 1.1.1

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