peco

Last updated: 2019-09-06

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Knit directory: peco-paper/

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Introduction

Cell cycle phase and cell types - among many reasons - are argubly the most candidates driving differences in gene expression among cells.

peco is a supervised approach for predicting continuous cell cycle phase in single-cell RNA-seq (scRNA-seq) data analysis.

We developed peco in a study that combined fluorescence imaging with scRNA-seq to measure cell cycle phase and gene expression levels in human induced pluripotent stem cells (iPSCs).

Our paper: Characterizing and inferring quantitative cell-cycle phase in single-cell RNA-seq data analysis.
Our software:

peco

Introduction

Download peco

Access data

Reproduce analysis