Last updated: 2020-04-25

Checks: 2 0

Knit directory: BgeeCall_practical/

This reproducible R Markdown analysis was created with workflowr (version 1.6.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 1e84e4a

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 1e84e4a. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/

Untracked files:
    Untracked:  .~lock.dif_expressed_genes.tsv#
    Untracked:  PCA_dim_1vs2.png
    Untracked:  PCA_prop_explained_variance.png
    Untracked:  analyis.R
    Untracked:  dif_expressed_genes.tsv
    Untracked:  inputFile.tsv
    Untracked:  merge.R
    Untracked:  release.tsv

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd 1e84e4a Julien 2020-04-25 wflow_publish(files = c(“analysis/analysis.Rmd”, “analysis/classes_description.Rmd”,
html 3f5d76c Julien 2020-04-24 Build site.
html 64f7db8 Julien 2020-04-24 Build site.
Rmd 590e07d Julien 2020-04-24 wflow_publish(files = c(“analysis/analysis.Rmd”, “analysis/classes_description.Rmd”,
html 2c7601e Julien 2020-04-24 Build site.
html 1cd80ad Julien 2020-04-22 Build site.
html 36a91e1 Julien 2020-04-22 Build site.
Rmd 0779975 Julien 2020-04-22 wrote general part
html 0779975 Julien 2020-04-22 wrote general part
html d93bad7 Julien 2020-04-22 update all html files
Rmd 454071e Julien 2020-04-22 create backbone of the website
html 454071e Julien 2020-04-22 create backbone of the website
html e5b4b64 Julien 2020-04-21 Build site.
Rmd 9695c61 Julien 2020-04-21 Start workflowr project.