Home

Last updated: 2021-12-06

Checks: 2 0

Knit directory: cacoaAnalysis/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 20c18c5

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 20c18c5. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.Rhistory
    Ignored:    analysis/de_figure_ep.nb.html
    Ignored:    analysis/preprocess.nb.html
    Ignored:    analysis/simulation_distances.nb.html
    Ignored:    analysis/simulation_note.nb.html
    Ignored:    analysis/simulation_variance.nb.html
    Ignored:    analysis/site_libs/
    Ignored:    cache/
    Ignored:    data/ASD/
    Ignored:    data/AZ/
    Ignored:    data/EP/
    Ignored:    data/MS/
    Ignored:    data/PF/
    Ignored:    data/SCC/
    Ignored:    man/

Untracked files:
    Untracked:  analysis/cluster_free_de_pf.Rmd
    Untracked:  analysis/de_figure_ep.Rmd
    Untracked:  analysis/fig_cluster_free_de.Rmd
    Untracked:  analysis/prepare_cacoa_results.Rmd
    Untracked:  analysis/simulation_note.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you've configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	20c18c5	viktor_petukhov	2021-12-06	Distance simulation notebook
html	697edea	viktor_petukhov	2021-11-30	Build structure notebooks
Rmd	269c679	viktor_petukhov	2021-11-30	Structure Rmds
Rmd	5e70bd6	viktor_petukhov	2021-11-23	Start workflowr project.