Last updated: 2020-07-08
Checks: 2 0
Knit directory: neural_scRNAseq/
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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you've configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | d8bd339 | khembach | 2020-07-08 | NSC integration with NES from Lam et al. |
| html | 0afd60f | khembach | 2020-07-02 | Build site. |
| Rmd | 6d0742b | khembach | 2020-07-02 | wflow_publish(c("analysis/NSC-1-clustering.Rmd", "analysis/NSC-2-annotation.Rmd", |
| html | 06330b1 | khembach | 2020-06-22 | Build site. |
| Rmd | f349423 | khembach | 2020-06-21 | regress out number of UMIs and perc mitochondrial features; cyclone |
| html | a4d0e04 | khembach | 2020-05-29 | Build site. |
| Rmd | 97d5a52 | khembach | 2020-05-29 | cluster analysis |
| html | a94efaa | khembach | 2020-05-29 | Build site. |
| Rmd | 7f5c1f8 | khembach | 2020-05-29 | dimension reduction and clustering |
| html | 6d822af | khembach | 2020-05-28 | Build site. |
| Rmd | a7ced59 | khembach | 2020-05-28 | cell and gene filtering |
| html | 1230f08 | khembach | 2020-05-27 | Build site. |
| Rmd | 6be1a5a | khembach | 2020-05-27 | rebuild without cache and SampleQC report |
| html | bb957e8 | khembach | 2020-05-26 | Build site. |
| Rmd | 4acc3c4 | khembach | 2020-05-26 | Link to preprocessing and QC |
| html | 16fe492 | khembach | 2020-05-22 | Build site. |
| Rmd | e4c9cd1 | khembach | 2020-05-22 | Start workflowr project. |
This analysis includes following steps:
Analysis of the two NSC samples:
Integrated analysis of all 6 samples:
Integration with Lam et al. 2019. Neuroepithelial stem (NES) cells: