Representation and Risk
Tina Lasisi
2024-03-03 20:03:35
Last updated: 2024-03-03
Checks: 7 0
Knit directory: PODFRIDGE/
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| html | 48acb9f | Tina Lasisi | 2024-03-02 | Build site. |
| html | aa3ff5c | Tina Lasisi | 2024-03-01 | Build site. |
| html | 9e71347 | Tina Lasisi | 2024-01-22 | Build site. |
| Rmd | aca0182 | Tina Lasisi | 2023-08-07 | Update FPR |
| html | 10423d8 | Tina Lasisi | 2023-05-18 | Update to add IBD page |
| Rmd | 64da0c3 | Tina Lasisi | 2023-04-30 | Update representation-risk.Rmd |
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| html | fea1021 | Tina Lasisi | 2023-04-16 | Build site. |
| Rmd | 7ae2686 | Tina Lasisi | 2023-04-16 | update Representation risk |
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| Rmd | 5f8febb | Tina Lasisi | 2023-04-16 | update Representation risk |
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| Rmd | 5ef241f | Tina Lasisi | 2023-04-16 | update everything |
# Load required packages
library(tidyverse)── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ──
✔ dplyr 1.1.4 ✔ readr 2.1.5
✔ forcats 1.0.0 ✔ stringr 1.5.1
✔ ggplot2 3.4.4 ✔ tibble 3.2.1
✔ lubridate 1.9.3 ✔ tidyr 1.3.0
✔ purrr 1.0.2
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::filter() masks stats::filter()
✖ dplyr::lag() masks stats::lag()
ℹ Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errorslibrary(patchwork)
knitr::opts_knit$set(root.dir = "..")
knitr::opts_chunk$set(eval = TRUE, echo = FALSE, fig.width = 7, fig.height = 6)European American vs African American probability of match
Population size vs. risk
Raw DB size vs. Raw pop - Cousin panel
This code generates four line plots that show the relationship between population size, database size, and the probability of finding a genetic match for different degrees of relatedness (1C, 2C, 3C, 4C).
Lines represent African American and European American population sizes, respectively.
Match vs. population size - Rel DB size gradient
Match vs. Cousin distance - Rel DB size gradient - population panel
Match vs. Rel DB size - pop size panel
Match vs. Rel DB size, over/under-representation panel
Match vs. Rel DB size vs - cousin panel, pop gradient
| Version | Author | Date |
|---|---|---|
| 9e71347 | Tina Lasisi | 2024-01-22 |
Final - Match vs. Rel DB size - cousin gradient (IBD not accounted)
| Version | Author | Date |
|---|---|---|
| 9e71347 | Tina Lasisi | 2024-01-22 |
R version 4.3.2 (2023-10-31)
Platform: aarch64-apple-darwin20 (64-bit)
Running under: macOS Sonoma 14.3.1
Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
time zone: America/Detroit
tzcode source: internal
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] ggrepel_0.9.5 patchwork_1.2.0 lubridate_1.9.3 forcats_1.0.0
[5] stringr_1.5.1 dplyr_1.1.4 purrr_1.0.2 readr_2.1.5
[9] tidyr_1.3.0 tibble_3.2.1 ggplot2_3.4.4 tidyverse_2.0.0
[13] workflowr_1.7.1
loaded via a namespace (and not attached):
[1] sass_0.4.8 utf8_1.2.4 generics_0.1.3 stringi_1.8.3
[5] hms_1.1.3 digest_0.6.34 magrittr_2.0.3 timechange_0.2.0
[9] evaluate_0.23 grid_4.3.2 fastmap_1.1.1 rprojroot_2.0.4
[13] jsonlite_1.8.8 processx_3.8.3 whisker_0.4.1 ps_1.7.5
[17] promises_1.2.1 httr_1.4.7 fansi_1.0.6 scales_1.3.0
[21] jquerylib_0.1.4 cli_3.6.2 rlang_1.1.3 munsell_0.5.0
[25] withr_2.5.2 cachem_1.0.8 yaml_2.3.8 tools_4.3.2
[29] tzdb_0.4.0 colorspace_2.1-0 httpuv_1.6.13 vctrs_0.6.5
[33] R6_2.5.1 lifecycle_1.0.4 git2r_0.33.0 fs_1.6.3
[37] pkgconfig_2.0.3 callr_3.7.3 pillar_1.9.0 bslib_0.6.1
[41] later_1.3.2 gtable_0.3.4 glue_1.7.0 Rcpp_1.0.12
[45] highr_0.10 xfun_0.41 tidyselect_1.2.0 rstudioapi_0.15.0
[49] knitr_1.45 farver_2.1.1 htmltools_0.5.7 labeling_0.4.3
[53] rmarkdown_2.25 compiler_4.3.2 getPass_0.2-4