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Last updated: 2025-12-18

Checks: 1 1

Knit directory: SkinOptics/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: uncommitted changes

The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Repository version: 777c6d5

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 777c6d5. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .DS_Store

Untracked files:
    Untracked:  output/delta_comparison_log.pdf
    Untracked:  output/face_ei_face_mi_comparison.pdf
    Untracked:  output/mi_distribution.png
    Untracked:  output/palm_ei_face_mi_comparison.pdf
    Untracked:  output/peak_valley_distribution_comparison.pdf
    Untracked:  output/peak_valley_distribution_composite.pdf
    Untracked:  output/predicted_lines_peakvalley_delta.pdf
    Untracked:  output/predicted_lines_reflectance_delta.pdf

Unstaged changes:
    Modified:   analysis/JID_SkinOptics.Rmd
    Modified:   analysis/index.Rmd
    Deleted:    analysis/skin-map.Rmd
    Deleted:    output/README.md
    Modified:   output/absorbance_derivative_face.pdf
    Modified:   output/absorbance_derivative_palm.pdf
    Modified:   output/absorbance_derivative_palm_face.pdf
    Deleted:    output/absorbance_mi_sd.pdf
    Modified:   output/absorbance_mi_sd_log.pdf
    Modified:   output/composite_reflectance_derivatives.pdf
    Deleted:    output/ei_mi_correlation.pdf
    Modified:   output/ei_sd_mi_correlation.pdf
    Deleted:    output/face_ei_face_mi_correlation.pdf
    Deleted:    output/face_ei_face_mi_log.pdf
    Deleted:    output/facepalm_ei_mi_correlation.pdf
    Modified:   output/heatmap.pdf
    Modified:   output/mi_distribution.pdf
    Deleted:    output/palm_ei_face_mi_correlation.pdf
    Deleted:    output/palm_ei_face_mi_log.pdf
    Modified:   output/palm_ei_face_mi_sd_correlation.pdf
    Deleted:    output/peak_valley_delta_vs_mi.pdf
    Modified:   output/peak_valley_delta_vs_mi_log.pdf
    Deleted:    output/peak_valley_scatter.pdf
    Modified:   output/peak_valley_value_distribution.pdf
    Deleted:    output/peak_valley_value_vs_mi.pdf
    Modified:   output/peak_valley_value_vs_mi_log.pdf
    Modified:   output/peak_valley_wavelength_distribution.pdf
    Deleted:    output/peak_valley_wavelength_vs_mi.pdf
    Modified:   output/peak_valley_wavelength_vs_mi_log.pdf
    Modified:   output/reflectance_delta_vs_mi.pdf
    Modified:   output/reflectance_delta_vs_mi_log.pdf
    Modified:   output/reflectance_derivative_face.pdf
    Modified:   output/reflectance_derivative_palm.pdf
    Modified:   output/reflectance_derivative_palm_face.pdf
    Deleted:    output/reflectance_derivative_palmface.pdf
    Modified:   output/reflectance_face.pdf
    Deleted:    output/reflectance_mi_sd.pdf
    Modified:   output/reflectance_mi_sd_log.pdf
    Deleted:    output/reflectance_mi_sd_regression.pdf
    Modified:   output/reflectance_palm.pdf
    Modified:   output/reflectance_palm_face.pdf

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
html	32c3e8f	Junhui He	2025-12-11	Rebuild site to apply navbar layout
html	81580b5	Junhui He	2025-12-11	build workflowr
Rmd	25733b0	Junhui He	2025-12-11	create SkinOptics

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Analyses

Skin Optics Analysis using ISSA Data