Last updated: 2019-11-19

Checks: 6 1

Knit directory: STUtility_web_site/

This reproducible R Markdown analysis was created with workflowr (version 1.5.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: uncommitted changes

The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

Seed: set.seed(20191031)

The command set.seed(20191031) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

Cache: none

Nice! There were no cached chunks for this analysis, so you can be confident that you successfully produced the results during this run.

File paths: relative

Great job! Using relative paths to the files within your workflowr project makes it easier to run your code on other machines.

Repository version: a3a1f1f

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/getting_started_cache/

Unstaged changes:
    Modified:   analysis/getting_started.Rmd
    Modified:   analysis/installation.Rmd
    Modified:   analysis/license.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.

File Version Author Date Message
html be8be1d Ludvig Larsson 2019-10-31 Build site.
html f42af97 Ludvig Larsson 2019-10-31 Build site.
html 0754921 Ludvig Larsson 2019-10-31 Build site.
html 908fe2c Ludvig Larsson 2019-10-31 Build site.
html 54787b5 Ludvig Larsson 2019-10-31 Build site.
html d96da86 Ludvig Larsson 2019-10-31 Build site.
html 7a20e6c Ludvig Larsson 2019-10-31 Build site.
Rmd 19ba86c Ludvig Larsson 2019-10-31 Added theme
html a3cff7a Ludvig Larsson 2019-10-31 Build site.
Rmd ec49ddf Ludvig Larsson 2019-10-31 Added theme
html 1a8c056 Ludvig Larsson 2019-10-31 Build site.
html a53305c Ludvig Larsson 2019-10-31 Build site.
html 6f61b95 Ludvig Larsson 2019-10-31 Build site.
Rmd 429c12c Ludvig Larsson 2019-10-31 Publish the initial files for myproject
html f0363a2 Ludvig Larsson 2019-10-31 Build site.
Rmd fab503b Ludvig Larsson 2019-10-31 Publish the initial files for myproject
html 41209f8 Ludvig Larsson 2019-10-31 Build site.
html d778f61 Ludvig Larsson 2019-10-31 Build site.
Rmd 77ea122 Ludvig Larsson 2019-10-31 Publish the initial files for myproject

Installation

Using devtools, execute the following from the R console: 

devtools::install_github(
    "jbergenstrahle/STUtility"
   , build_opts = c("--no-resave-data", "--no-manual")
)

Note on MacOS

If you run into Error in dyn.load(file, DLLpath = DLLpath, ...):, make sure you have XQuartz installed, which can be downloaded from xquartz.org

 

A work by Joseph Bergenstråhle and Ludvig Larsson

 


sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Antergos Linux

Matrix products: default
BLAS:   /usr/lib/libblas.so.3.8.0
LAPACK: /usr/lib/liblapack.so.3.8.0

locale:
 [1] LC_CTYPE=sv_SE.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=sv_SE.UTF-8        LC_COLLATE=sv_SE.UTF-8    
 [5] LC_MONETARY=sv_SE.UTF-8    LC_MESSAGES=sv_SE.UTF-8   
 [7] LC_PAPER=sv_SE.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=sv_SE.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] workflowr_1.5.0 Rcpp_1.0.2      rprojroot_1.3-2 digest_0.6.21  
 [5] later_0.8.0     R6_2.4.0        backports_1.1.5 git2r_0.26.1   
 [9] magrittr_1.5    evaluate_0.14   stringi_1.4.3   fs_1.3.1       
[13] promises_1.0.1  whisker_0.3-2   rmarkdown_1.15  tools_3.6.1    
[17] stringr_1.4.0   glue_1.3.1      httpuv_1.5.1    xfun_0.9       
[21] yaml_2.2.0      compiler_3.6.1  htmltools_0.3.6 knitr_1.24