Last updated: 2020-04-25

Checks: 1 1

Knit directory: social_immunity/

This reproducible R Markdown analysis was created with workflowr (version 1.6.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: uncommitted changes

The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Repository version: e6f52d0

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    code/notes from old analysis of movement.R
    Ignored:    data/.DS_Store
    Ignored:    data/movement data - not used/
    Ignored:    output/exp1_model.rds
    Ignored:    output/exp1_post_prob.rds
    Ignored:    output/exp2_model.rds
    Ignored:    output/exp2_post_prob.rds
    Ignored:    output/exp3_model.rds
    Ignored:    output/exp3_post_prob.rds

Unstaged changes:
    Modified:   .gitignore
    Modified:   analysis/index.Rmd
    Modified:   figures/fig1.pdf
    Modified:   figures/fig2.pdf
    Modified:   figures/fig3.pdf

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.

File Version Author Date Message
html e58e720 lukeholman 2020-04-25 Build site.
html 384d5b5 lukeholman 2020-04-25 tweaks
html bca7891 lukeholman 2020-04-25 Build site.
Rmd 54a96ac lukeholman 2020-04-25 tweaks
html 54a96ac lukeholman 2020-04-25 tweaks
Rmd aae65cf lukeholman 2019-10-17 First commit
html aae65cf lukeholman 2019-10-17 First commit
Rmd 023a508 lukeholman 2019-10-17 Start workflowr project.

This website accompanies the paper ‘Honeybees detect and evict sick nestmates using chemical cues’ by Tarli Conroy and Luke Holman. Click the links below or use the navigation button to browse to view the analyses for Experiments 1-3.

1. Analysis of Experiment 1

2. Analysis of Experiment 2

3. Analysis of Experiment 3