Last updated: 2021-01-11

Checks: 2 0

Knit directory: social_immunity/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 36cb008

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 36cb008. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    code/notes from old analysis of movement.R
    Ignored:    data/.DS_Store
    Ignored:    data/movement data - not used/
    Ignored:    output/exp1_model.rds
    Ignored:    output/exp2_model.rds
    Ignored:    output/exp2_post_prob.rds
    Ignored:    output/exp3_model.rds
    Ignored:    output/exp3_post_prob.rds

Unstaged changes:
    Modified:   analysis/experiment2.Rmd
    Modified:   figures/fig1.pdf
    Modified:   figures/fig2.pdf
    Modified:   figures/fig3.pdf
    Modified:   figures/tableS1.rds
    Modified:   figures/tableS2.rds
    Modified:   figures/tableS3.rds
    Modified:   figures/tableS4.rds
    Modified:   figures/tableS5.rds
    Modified:   figures/tableS6.rds

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/about.Rmd) and HTML (docs/about.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html 939ecd0 lukeholman 2021-01-11 Build site.
html eeb5a09 lukeholman 2020-11-30 Build site.
html 7bf607f lukeholman 2020-05-02 Build site.
html 3df58c2 lukeholman 2020-05-02 Build site.
html 2994a41 lukeholman 2020-05-02 Build site.
html d166566 lukeholman 2020-05-02 Build site.
html fedef8f lukeholman 2020-05-02 Build site.
html 2227713 lukeholman 2020-05-02 Build site.
html 1c9a1c3 lukeholman 2020-05-02 Build site.
html d56c18f lukeholman 2020-04-30 Build site.
html 93c487a lukeholman 2020-04-30 Build site.
html 5c45197 lukeholman 2020-04-30 Build site.
html 4bd75dc lukeholman 2020-04-30 Build site.
html d6437a5 lukeholman 2020-04-25 Build site.
html e58e720 lukeholman 2020-04-25 Build site.
html bca7891 lukeholman 2020-04-25 Build site.
Rmd 54a96ac lukeholman 2020-04-25 tweaks
html aae65cf lukeholman 2019-10-17 First commit
Rmd 023a508 lukeholman 2019-10-17 Start workflowr project.

These analyses accompany an in-prep manuscript.

You can read more about Luke Holman’s research or get in contact with him at lukeholman.org.