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Last updated: 2020-06-23

Checks: 1 1

Knit directory: genes-to-foodweb-stability/

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Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    code/.Rhistory

Unstaged changes:
    Modified:   analysis/about.Rmd
    Modified:   analysis/index.Rmd
    Modified:   analysis/license.Rmd
    Deleted:    figures/conceptual.key
    Deleted:    figures/conceptual.pdf
    Deleted:    figures/initial-foodweb-structural-stability-v5-gimp.png
    Deleted:    figures/initial-foodweb-structural-stability-v5-gimp.xcf
    Deleted:    figures/rich-geno-critical-transitions-images-v2.key
    Deleted:    figures/rich-geno-critical-transitions-images-v2.pdf
    Deleted:    figures/rich-state-transitions-images-v3.key
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    Deleted:    figures/rich-structural-stability-images-v2.key
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Staged changes:
    Modified:   README.md
    New:        analysis/critical-transitions.Rmd
    Modified:   analysis/index.Rmd
    Modified:   analysis/license.Rmd
    New:        analysis/plant-growth-no-insects.Rmd
    New:        analysis/structural-stability.Rmd
    Modified:   code/README.md
    New:        code/glm-ftest.R
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    New:        code/prep-time-series.R
    New:        code/simulate-community-dynamics.R
    New:        code/temperature-structural-stability-fig.R
    New:        data/ExperimentPlantBiomass.csv
    New:        data/PreExperimentNoInsectsPlantBiomass.csv
    Modified:   data/README.md
    New:        data/arabidopsis_clean_df.csv
    New:        figures/conceptual.key
    New:        figures/conceptual.pdf
    New:        figures/initial-foodweb-structural-stability-v2.png
    New:        figures/initial-foodweb-structural-stability-v5-gimp.png
    New:        figures/initial-foodweb-structural-stability-v5-gimp.xcf
    New:        figures/rich-geno-critical-transition-v4.pdf
    New:        figures/rich-geno-critical-transitions-images-v2.key
    New:        figures/rich-geno-critical-transitions-images-v2.pdf
    New:        figures/rich-state-transitions-images-v3.key
    New:        figures/rich-state-transitions-images-v3.pdf
    New:        figures/rich-structural-stability-R-v2.pdf
    New:        figures/rich-structural-stability-images-v2.key
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    Modified:   output/README.md
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    New:        output/plant-growth-no-insects.RData
    New:        output/reduced.1.brm.rds
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    New:        output/structural-stability.RData
    New:        output/timeseries_df.csv

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File	Version	Author	Date	Message
html	28c2a9f	mabarbour	2020-02-05	Build site.
Rmd	27ad8e2	mabarbour	2020-02-05	Start workflowr project.

All data within this repository is under a CC0 License, everything else is under a MIT License.

To the extent possible under law, Matthew A. Barbour has waived all copyright and related or neighboring rights to this work. This work is published from: Switzerland.

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

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