Last updated: 2021-04-29

Checks: 2 0

Knit directory: Bio326/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 273fc86

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 273fc86. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .DS_Store

Untracked files:
    Untracked:  BIO326 URL genome annotatin computer lab_24_MAR_2021.docx
    Untracked:  BIO326-RNAseq.pptx
    Untracked:  BIO326-genome/
    Untracked:  BIO326.MS.10th_FEB_2021function.pptx
    Untracked:  BIO326_Introduction to sequence technology and protocols_3rd_FEB_2021.pdf
    Untracked:  BIO326_Introduction to sequence technology and protocols_3rd_FEB_2021.pptx
    Untracked:  BIO326_RNAseq_5th_FEB_2021.pptx
    Untracked:  BIO326_SQK-RAD004 DNA challenge.docx
    Untracked:  BIO326_visual_30_APR_2021.pptx
    Untracked:  Bio326.genome.html
    Untracked:  PCRdemo.R
    Untracked:  Pig_mutation_hist.csv
    Untracked:  RNAseq.Rplot.pdf
    Untracked:  Untitled.R
    Untracked:  samples.xlsx
    Untracked:  vis.xlsx
    Untracked:  workflowR.bio326.R
    Untracked:  ~$BIO326_visual_30_APR_2021.pptx

Unstaged changes:
    Modified:   analysis/Bio326.misc.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd 273fc86 mariesaitou 2021-04-29 Add my first analysis
html feb95d3 mariesaitou 2021-04-29 Build site.
Rmd ac62338 mariesaitou 2021-04-29 Add my first analysis
html 1efdc48 mariesaitou 2021-04-29 Build site.
Rmd cedda1a mariesaitou 2021-04-29 image data set
Rmd 720e7b2 mariesaitou 2021-04-29 Start workflowr project.
html 43ac0de mariesaitou 2021-02-04 Build site.
html 6272982 mariesaitou 2021-02-04 Build site.
Rmd b9d988a mariesaitou 2021-02-04 Add my first analysis
Rmd 6bb06a8 mariesaitou 2021-02-04 Start workflowr project.
html 74dd8e3 mariesaitou 2021-02-03 Build site.
html b425594 mariesaitou 2021-01-28 Build site.
html 067284e mariesaitou 2021-01-28 Build site.
html 1fa796d mariesaitou 2021-01-28 Build site.
html 5f38542 mariesaitou 2021-01-28 Build site.
html 2102442 mariesaitou 2021-01-28 Build site.
Rmd a446022 mariesaitou 2021-01-28 Publish the initial files for BIO326
html ae3dfb5 mariesaitou 2021-01-28 Build site.
html 2e5f89a mariesaitou 2021-01-28 Build site.
html a81d12e mariesaitou 2021-01-28 Build site.
Rmd 2d1b95b mariesaitou 2021-01-28 Start workflowr project.

** Welcome to Bio326 **

BIO326 Genome sequencing; tools and analysis (2021) This is the repository of MS’s part (Bioinformatics Analysis) of BIO326 at NMBU. https://www.nmbu.no/course/BIO326

Index