Last updated: 2020-04-16

Checks: 7 0

Knit directory: globalIRmap/

This reproducible R Markdown analysis was created with workflowr (version 1.6.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


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    Ignored:    .Rhistory
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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/about.Rmd) and HTML (docs/about.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html 4797458 Mathis Loïc Messager 2020-04-16 Build site.
html 28d8bfd Mathis Loïc Messager 2020-04-16 Build site.
html 80008f7 Mathis Loïc Messager 2020-04-14 Build site.
Rmd ce60469 Mathis Loïc Messager 2020-04-14 First publication
Rmd b8ce7d1 unknown 2020-04-14 change to workflowr project structure
Rmd b206686 Mathis Loïc Messager 2020-04-14 Start workflowr project.

Global mapping of intermittent rivers and ephemeral streams

# Authors

Mathis Loïc Messager ()
Charlotte Cockburn Thibault Datry Bernhard Lehner

Contents

This repository contains the research compendium of the above mentioned paper.

How to use

Read the code, access the data

See the code directory on GitHub for the source code that generated the figures and statistical results contained in the manuscript. The raw data is stored on Zenodo and HydroSHEDS and will be downloaded when starting the analysis.

Install the R package

Build Status

This repository is organized as an R package, providing functions and raw data to reproduce and extend the analysis reported in the publication. Note that this package has been written explicitly for this project and may not be suitable for general use.

This project is setup with a drake workflow, ensuring reproducibility. Intermediate targets/objects will be stored in a hidden .drake directory.

The R library of this project is managed by packrat. This makes sure that the exact same package versions are used when recreating the project. When calling packrat::restore(), all required packages will be installed with their specific version.

Please note that this project was built with R version X.X.X on a Windows 10 operating system. The packrat packages from this project are not compatible with R versions prior version 3.5.0. (In general, it should be possible to reproduce the analysis on any other operating system.)

To clone the project, a working installation of git is required. Open a terminal in the directory of your choice and execute:

git clone git@github.com:messamat/globalIRmap.git

Then start R in this directory and run

packrat::restore() # restores all R packages with their specific version
r_make() # recreates the analysis

Structure of the analysis

In the drake philosophy, every R object is a “target” with dependencies. This repository contains more targets than actually needed to replicate the associated publication.

If you want to replicate the publication, you need to build the following targets: - - - -

Other practical notes

Notes and resources


sessionInfo()
R version 3.6.2 (2019-12-12)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252 
[2] LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

loaded via a namespace (and not attached):
 [1] workflowr_1.6.1 Rcpp_1.0.3      rprojroot_1.3-2 packrat_0.5.0  
 [5] digest_0.6.25   later_1.0.0     R6_2.4.1        backports_1.1.5
 [9] git2r_0.26.1    magrittr_1.5    evaluate_0.14   stringi_1.4.6  
[13] rlang_0.4.4     fs_1.4.0        promises_1.1.0  whisker_0.4    
[17] rmarkdown_2.1   tools_3.6.2     stringr_1.4.0   glue_1.3.1     
[21] httpuv_1.5.2    xfun_0.12       yaml_2.2.1      compiler_3.6.2 
[25] htmltools_0.4.0 knitr_1.28