Last updated: 2021-01-06

Checks: 6 1

Knit directory: globalIRmap/analysis/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


The R Markdown is untracked by Git. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.

The command set.seed(12345) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.

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Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 21b2992. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

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Ignored files:
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    Ignored:    .drake/config/
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Unstaged changes:
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    Modified:   interactive.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


There are no past versions. Publish this analysis with wflow_publish() to start tracking its development.



sessionInfo()
R version 4.0.2 (2020-06-22)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252 
[2] LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] visNetwork_2.0.9                 tidyhydat_0.5.0                 
 [3] raster_3.3-13                    quantreg_5.67                   
 [5] SparseM_1.78                     profvis_0.3.6                   
 [7] tictoc_1.0                       stringr_1.4.0                   
 [9] sf_0.9-6                         scales_1.1.0                    
[11] rnaturalearthdata_0.1.0          rnaturalearth_0.1.0             
[13] rgeos_0.5-5                      rgdal_1.5-16                    
[15] sp_1.4-2                         reprex_0.3.0                    
[17] rbin_0.2.0                       ranger_0.12.1                   
[19] qs_0.23.2                        poweRlaw_0.70.6                 
[21] plyr_1.8.6                       patchwork_1.1.0                 
[23] paradox_0.4.0                    olsrr_0.5.3                     
[25] mvtnorm_1.1-1                    mlr3viz_0.3.0                   
[27] mlr3tuning_0.3.0                 mlr3pipelines_0.3.0             
[29] mlr3learners_0.3.0               mlr3_0.6.0                      
[31] mgcv_1.8-33                      nlme_3.1-147                    
[33] maps_3.3.0                       lubridate_1.7.9                 
[35] kableExtra_1.2.1                 gstat_2.0-6                     
[37] gridExtra_2.3                    ggpubr_0.4.0                    
[39] ggnewscale_0.4.3                 ggalluvial_0.12.2               
[41] ggplot2_3.3.0                    gdalUtils_2.0.3.2               
[43] furrr_0.1.0                      future.callr_0.5.0              
[45] future.apply_1.6.0               future_1.18.0                   
[47] drake_7.12.5                     dplyr_1.0.2                     
[49] data.table_1.13.2                cowplot_1.0.0                   
[51] mandrake_1.0.0                   facetscales_0.1.0.9000          
[53] bigstatsr_1.2.3                  edarf_1.1.1                     
[55] mlr3learners.partykit_0.2.1.9000 mlr3spatiotempcv_0.0.0.9004     
[57] rprojroot_1.3-2                 

loaded via a namespace (and not attached):
  [1] R.utils_2.9.2       tidyselect_1.1.0    htmlwidgets_1.5.1  
  [4] mlr3misc_0.5.0      munsell_0.5.0       mmpf_0.0.5         
  [7] base64url_1.4       units_0.6-7         codetools_0.2-16   
 [10] bbotk_0.2.1         withr_2.2.0         colorspace_1.4-1   
 [13] filelock_1.0.2      knitr_1.29          uuid_0.1-4         
 [16] rstudioapi_0.11     Metrics_0.1.4       ggsignif_0.6.0     
 [19] listenv_0.8.0       git2r_0.27.1        lgr_0.3.4          
 [22] txtq_0.2.3          vctrs_0.3.4         generics_0.0.2     
 [25] xfun_0.17           R6_2.4.1            bigassertr_0.1.3   
 [28] doParallel_1.0.15   mlr3measures_0.2.0  assertthat_0.2.1   
 [31] promises_1.1.0      gtable_0.3.0        globals_0.12.5     
 [34] conquer_1.0.2       processx_3.4.2      goftest_1.2-2      
 [37] workflowr_1.6.2     MatrixModels_0.4-1  rlang_0.4.7        
 [40] flock_0.7           splines_4.0.2       rstatix_0.6.0      
 [43] broom_0.5.6         checkmate_2.0.0     yaml_2.2.1         
 [46] bigparallelr_0.2.3  abind_1.4-5         backports_1.1.10   
 [49] httpuv_1.5.4        inum_1.0-1          tools_4.0.2        
 [52] ellipsis_0.3.0      Rcpp_1.0.4.6        progress_1.2.2     
 [55] classInt_0.4-3      purrr_0.3.4         ps_1.3.3           
 [58] prettyunits_1.1.1   rpart_4.1-15        zoo_1.8-8          
 [61] haven_2.3.1         fs_1.5.0            magrittr_1.5       
 [64] openxlsx_4.1.5      spacetime_1.2-3     storr_1.2.1        
 [67] matrixStats_0.56.0  stringfish_0.14.2   hms_0.5.3          
 [70] evaluate_0.14       rio_0.5.16          readxl_1.3.1       
 [73] compiler_4.0.2      tibble_3.0.1        KernSmooth_2.23-16 
 [76] crayon_1.3.4        R.oo_1.23.0         htmltools_0.4.0    
 [79] later_1.0.0         Formula_1.2-3       libcoin_1.0-6      
 [82] tidyr_1.0.3         RcppParallel_5.0.2  DBI_1.1.0          
 [85] RApiSerialize_0.1.0 Matrix_1.2-18       car_3.0-9          
 [88] cli_2.0.2           R.methodsS3_1.8.0   parallel_4.0.2     
 [91] igraph_1.2.5        forcats_0.5.0       pkgconfig_2.0.3    
 [94] foreign_0.8-78      xml2_1.3.2          roxygen2_7.1.1     
 [97] foreach_1.5.0       webshot_0.5.2       rvest_0.3.6        
[100] callr_3.4.3         digest_0.6.25       pracma_2.2.9       
[103] rmarkdown_2.3       cellranger_1.1.0    intervals_0.15.2   
[106] nortest_1.0-4       curl_4.3            jsonlite_1.6.1     
[109] lifecycle_0.2.0     carData_3.0-4       viridisLite_0.3.0  
[112] fansi_0.4.1         pillar_1.4.4        lattice_0.20-41    
[115] survival_3.1-12     httr_1.4.2          glue_1.4.0         
[118] xts_0.12-0          zip_2.1.1           FNN_1.1.3          
[121] iterators_1.0.12    class_7.3-16        stringi_1.4.6      
[124] partykit_1.2-9      e1071_1.7-3