Last updated: 2022-11-10

Checks: 2 0

Knit directory: dgrp-starve/

This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: fdbbbf0

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version fdbbbf0. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    code/.RData
    Ignored:    code/.Rhistory

Untracked files:
    Untracked:  analysis/starveBackup
    Untracked:  code/THEREISNOSTAT.R
    Untracked:  code/geneGO.R
    Untracked:  code/snpGene.77509.err
    Untracked:  code/snpGene.77509.out
    Untracked:  code/snpGene.77515.err
    Untracked:  code/snpGene.77515.out
    Untracked:  code/snpGene.sbatch
    Untracked:  dataPrep.Rmd
    Untracked:  tempDL

Unstaged changes:
    Modified:   analysis/_site.yml
    Deleted:    analysis/dataPrep.Rmd
    Modified:   analysis/starve.Rmd
    Modified:   code/snpGene.R

Staged changes:
    New:        code/snpGene.R
    New:        data/geneHits.txt

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/database.Rmd) and HTML (docs/database.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd fdbbbf0 nklimko 2022-11-09 database RMD/html, wflowR on secretariat
html fdbbbf0 nklimko 2022-11-09 database RMD/html, wflowR on secretariat

-– title: “Data and Scripts” output: workflowr::wflow_html: toc: false editor_options: chunk_output_type: console —

Raw Data

SNPs of interest