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workflowr

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Last updated: 2023-01-08

Checks: 2 0

Knit directory: dgrp-starve/

This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

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R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 951799a

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 951799a. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:

Untracked files:
    Untracked:  code/aaaTest
    Untracked:  code/analysisSR.R
    Untracked:  code/geneGO.R
    Untracked:  code/multiPrep.R
    Untracked:  code/regress.81916.err
    Untracked:  code/regress.81916.out
    Untracked:  code/regress.81918.err
    Untracked:  code/regress.81918.out
    Untracked:  code/regress.R
    Untracked:  code/regress.sbatch
    Untracked:  code/regressF.81919.err
    Untracked:  code/regressF.81919.out
    Untracked:  code/regressF.R
    Untracked:  code/regressF.sbatch
    Untracked:  code/snpGene.77509.err
    Untracked:  code/snpGene.77509.out
    Untracked:  code/snpGene.77515.err
    Untracked:  code/snpGene.77515.out
    Untracked:  code/snpGene.sbatch
    Untracked:  data/eQTL_traits_females.csv
    Untracked:  data/eQTL_traits_males.csv
    Untracked:  data/fMeans.txt
    Untracked:  data/fRegress.txt
    Untracked:  data/goGroups.txt
    Untracked:  data/mMeans.txt
    Untracked:  data/mPart.txt
    Untracked:  data/mRegress.txt
    Untracked:  data/starve-f.txt
    Untracked:  data/starve-m.txt
    Untracked:  data/xp-f.txt
    Untracked:  data/xp-m.txt
    Untracked:  figure/
    Untracked:  scoreAnalysisMulticomp.R
    Untracked:  temp.Rmd

Unstaged changes:
    Deleted:    analysis/database.Rmd
    Modified:   code/baseScript-lineComp.R
    Modified:   code/fourLinePrep.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/about.Rmd) and HTML (docs/about.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
html	3751eb8	nklimko	2022-12-14	Build site.
html	88ee9ec	nklimko	2022-11-29	Build site.
html	37278c9	nklimko	2022-11-22	Build site.
html	f09779e	nklimko	2022-11-22	Build site.
html	f1d6437	nklimko	2022-11-15	Build site.
html	79e98ca	nklimko	2022-11-15	Build site.
html	d23d7f7	nklimko	2022-11-11	Build site.
Rmd	3a282f1	nklimko	2022-11-11	wflow_publish("analysis/*")
html	0ce7be4	nklimko	2022-11-10	code sync
Rmd	b90e540	nklimko	2022-11-09	wflow_git_commit(all = TRUE)
html	b90e540	nklimko	2022-11-09	wflow_git_commit(all = TRUE)
html	81037cc	nklimko	2022-11-09	html reworking, snp success
html	d2abea6	nklimko	2022-11-05	11/5 Phase plan, data prep/analysis nested steps and pseudo for script
Rmd	e9314ce	nklimko	2022-11-05	wflow_git_commit(all = TRUE)
html	e9314ce	nklimko	2022-11-05	wflow_git_commit(all = TRUE)
Rmd	3dab5a8	nklimko	2022-11-01	all files for me
html	3dab5a8	nklimko	2022-11-01	all files for me

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