Last updated: 2022-11-08
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Knit directory: dgrp-starve/
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|---|---|---|---|---|
| Rmd | 41de4a8 | nklimko | 2022-11-08 | difMinus success, reframe for all four genotype analysis |
for each file,
#dupeCheck <- rbind(difMinus, difPlus, avgMinus, avgPlus)
#print(arrange(dupeCheck, dupeCheck$line), n=55)
#8 of them repeat between dif and avg
#broken with data.table formatFollowing analysis of trait difference by sex alone, I sought to compare groups of interest on SNP Difference
Data was taken from this table of SNP variations by line
Male > Female
Top 20 Mean
Top 20 Difference
sessionInfo()R version 4.0.3 (2020-10-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)
Matrix products: default
BLAS/LAPACK: /opt/ohpc/pub/Software/openblas_0.3.10/lib/libopenblas_haswellp-r0.3.10.dev.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] data.table_1.14.2 dplyr_1.0.8 tidyr_1.2.0
loaded via a namespace (and not attached):
[1] Rcpp_1.0.8.3 pillar_1.7.0 compiler_4.0.3 bslib_0.3.1
[5] later_1.3.0 jquerylib_0.1.4 git2r_0.30.1 workflowr_1.7.0
[9] tools_4.0.3 digest_0.6.29 jsonlite_1.8.0 evaluate_0.15
[13] lifecycle_1.0.1 tibble_3.1.6 pkgconfig_2.0.3 rlang_1.0.4
[17] DBI_1.1.2 cli_3.3.0 rstudioapi_0.13 yaml_2.3.5
[21] xfun_0.30 fastmap_1.1.0 stringr_1.4.0 knitr_1.38
[25] generics_0.1.2 fs_1.5.2 vctrs_0.4.1 sass_0.4.1
[29] tidyselect_1.1.2 rprojroot_2.0.3 glue_1.6.2 R6_2.5.1
[33] fansi_1.0.3 rmarkdown_2.16 purrr_0.3.4 magrittr_2.0.3
[37] whisker_0.4 promises_1.2.0.1 ellipsis_0.3.2 htmltools_0.5.2
[41] assertthat_0.2.1 httpuv_1.6.5 utf8_1.2.2 stringi_1.7.6
[45] crayon_1.5.1