Last updated: 2022-11-09

Checks: 1 1

Knit directory: dgrp-starve/

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    Modified:   analysis/about.Rmd
    Modified:   analysis/dataPrep.Rmd
    Modified:   analysis/index.Rmd
    Modified:   analysis/license.Rmd
    Modified:   analysis/starve.Rmd
    Modified:   code/combineSNP.R
    Modified:   code/fourLinePrep.R
    Deleted:    code/largeDataManip.R
    Deleted:    code/rowMean.R
    Deleted:    code/sort.R
    Modified:   code/starveDataPrep.R
    Deleted:    code/tempWFR.R
    Modified:   data/
    Deleted:    data/g1-result.txt
    Deleted:    data/group1.txt
    Deleted:    data/testComp.txt
    Deleted:    jobs/line_comp.76967.err
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File Version Author Date Message
html 81037cc nklimko 2022-11-09 html reworking, snp success
html e9314ce nklimko 2022-11-05 wflow_git_commit(all = TRUE)
Rmd 3dab5a8 nklimko 2022-11-01 all files for me
html 3dab5a8 nklimko 2022-11-01 all files for me

Welcome to my research website.

link testing

data folder


details background information and the premise of this project

Starvation Resistance Curation

Gathering of starvation resistance data from female and male lines and column calculation

Analysis of SR by Sex

Selecting Ingroups

Manual selection of groups of interest for futher comparison using additional data layers

SNP Extraction

Selection of SNPs by comparison of prevalence in chosen sample versus remaining lines

SNP Curation

Combination of all sample SNPs to streamline analysis

Gene Extraction

Mapping extracted SNPs to genes using flybase annotations

GO Term Extraction

Compilation of GO terms from affected genes to measure impact