Last updated: 2019-07-10

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Knit directory: 2019-feature-selection/

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Aggregated performances

(Table) All leaner/filter/task combinations ordered by performance.

Warning: Expected 2 pieces. Additional pieces discarded in 9 rows [6, 15,
24, 35, 44, 53, 64, 73, 82].
Warning: Expected 2 pieces. Missing pieces filled with `NA` in 15 rows [1,
10, 19, 28, 29, 30, 39, 48, 57, 58, 59, 68, 77, 86, 87].
learner_group task.id filter best
SVM VI PCA 1.822990e+00
SVM VI CMIM 1.828968e+00
SVM VI Relief 1.829052e+00
SVM VI Info 1.832112e+00
SVM HR Pearson 1.835110e+00
SVM VI No Filter 1.837101e+00
SVM HR No Filter 1.837101e+00
SVM NRI CMIM 1.837772e+00
SVM HR Borda 1.838642e+00
SVM NRI PCA 1.839763e+00
SVM HR CMIM 1.839929e+00
SVM HR MRMR 1.839938e+00
SVM HR Car 1.840133e+00
SVM VI Pearson 1.841647e+00
SVM HR Info 1.845974e+00
SVM NRI No Filter 1.862812e+00
SVM NRI Car 1.864166e+00
SVM NRI Relief 1.864614e+00
SVM NRI MRMR 1.870250e+00
SVM HR PCA 1.870688e+00
SVM VI Borda 1.872476e+00
SVM NRI Pearson 1.879307e+00
SVM HR Relief 1.894857e+00
SVM NRI Info 1.903714e+00
SVM VI Car 1.920964e+00
SVM VI MRMR 1.934234e+00
SVM NRI Borda 1.976663e+00
RIDGE NRI No Filter 2.116192e+00
XG HR Info 2.141743e+00
XG HR CMIM 2.159212e+00
XG HR MRMR 2.163146e+00
XG HR Car 2.195092e+00
RF NRI Borda 2.260054e+00
XG NRI MRMR 2.284767e+00
RF NRI Car 2.288120e+00
XG NRI Relief 2.296078e+00
XG NRI Car 2.317280e+00
XG NRI No Filter 2.324032e+00
XG NRI Info 2.353680e+00
XG VI Borda 2.357035e+00
XG NRI CMIM 2.359601e+00
RIDGE HR No Filter 2.362227e+00
RF NRI Info 2.383427e+00
XG HR PCA 2.387424e+00
XG VI Relief 2.409191e+00
RF HR Info 2.423537e+00
XG VI PCA 2.435016e+00
RF NRI Pearson 2.454691e+00
RF NRI MRMR 2.476900e+00
RF HR Borda 2.477372e+00
XG NRI PCA 2.479044e+00
RF VI Info 2.479226e+00
RF NRI PCA 2.486899e+00
XG NRI Pearson 2.499908e+00
RF VI CMIM 2.505334e+00
XG VI CMIM 2.507646e+00
RF HR PCA 2.508722e+00
RF VI MRMR 2.512445e+00
RF VI PCA 2.534520e+00
RF HR Relief 2.550136e+00
RF HR Pearson 2.555868e+00
RF NRI Relief 2.557534e+00
RF NRI CMIM 2.563138e+00
RF NRI No Filter 2.568671e+00
XG HR Borda 2.570526e+00
RF VI No Filter 2.585326e+00
RF HR Car 2.588946e+00
RF VI Borda 2.594228e+00
XG VI MRMR 2.597668e+00
RF VI Relief 2.600838e+00
XG HR Pearson 2.614220e+00
RF HR CMIM 2.616294e+00
RF VI Pearson 2.616360e+00
XG VI Pearson 2.643068e+00
XG HR Relief 2.644360e+00
XG VI Info 2.644628e+00
RF VI Car 2.662560e+00
RF HR MRMR 2.664423e+00
XG HR No Filter 2.682939e+00
XG VI No Filter 2.690225e+00
XG VI Car 2.699897e+00
XG NRI Borda 2.768898e+00
RF HR No Filter 2.815297e+00
LASSO HR No Filter 3.145344e+00
LASSO NRI No Filter 3.283980e+00
LASSO VI No Filter 3.797710e+00
RIDGE VI No Filter 1.803087e+06

(Table) Best learner/filter/task combination

Warning: Expected 2 pieces. Additional pieces discarded in 9 rows [6, 15,
24, 35, 44, 53, 64, 73, 82].
Warning: Expected 2 pieces. Missing pieces filled with `NA` in 15 rows [1,
10, 19, 28, 29, 30, 39, 48, 57, 58, 59, 68, 77, 86, 87].
task.id learner.id learner_group filter rmse.test.rmse
defoliation-all-plots-VI SVM PCA SVM PCA 1.822990
defoliation-all-plots-NRI RIDGE RIDGE No Filter 2.116192
defoliation-all-plots-HR XG Info Gain XG Info 2.141743
defoliation-all-plots-NRI RF Borda RF Borda 2.260054
defoliation-all-plots-HR LASSO LASSO No Filter 3.145344

(Plot) Best learner/filter combs for all tasks

Warning: Expected 1 pieces. Additional pieces discarded in 72 rows [2, 3,
4, 5, 6, 7, 8, 9, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, ...].
Warning: Removed 1 rows containing missing values (geom_point).
Warning: Removed 1 rows containing missing values (geom_label_repel).

Version Author Date
c238ce4 pat-s 2019-07-10

R version 3.5.2 (2018-12-20)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

Matrix products: default
BLAS: /opt/R/3.5.2/lib64/R/lib/libRblas.so
LAPACK: /usr/lib64/libopenblaso-r0.3.3.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] ggpubr_0.1.6      ggsci_2.9         ggrepel_0.8.0     ggplot2_3.1.0    
[5] dplyr_0.8.0.1     magrittr_1.5      mlr_2.14.0.9000   ParamHelpers_1.12
[9] tidyselect_0.2.5 

loaded via a namespace (and not attached):
 [1] storr_1.2.1       xfun_0.5          purrr_0.3.0      
 [4] splines_3.5.2     lattice_0.20-38   colorspace_1.4-0 
 [7] htmltools_0.3.6   yaml_2.2.0        survival_2.43-3  
[10] rlang_0.3.4       R.oo_1.22.0       pillar_1.3.1     
[13] glue_1.3.0        withr_2.1.2       R.utils_2.8.0    
[16] plyr_1.8.4        stringr_1.4.0     munsell_0.5.0    
[19] gtable_0.2.0      workflowr_1.4.0   R.methodsS3_1.7.1
[22] evaluate_0.13     labeling_0.3      knitr_1.23       
[25] parallelMap_1.3   parallel_3.5.2    highr_0.7        
[28] Rcpp_1.0.0        scales_1.0.0      backports_1.1.3  
[31] checkmate_1.9.1   fs_1.2.6          fastmatch_1.1-0  
[34] digest_0.6.18     stringi_1.3.1     BBmisc_1.11      
[37] grid_3.5.2        rprojroot_1.3-2   cli_1.1.0        
[40] tools_3.5.2       base64url_1.4     lazyeval_0.2.1   
[43] tibble_2.0.1      crayon_1.3.4      whisker_0.3-2    
[46] tidyr_0.8.2       pkgconfig_2.0.2   Matrix_1.2-15    
[49] data.table_1.12.0 drake_7.4.0.9000  assertthat_0.2.0 
[52] rmarkdown_1.13    R6_2.4.0          igraph_1.2.4     
[55] git2r_0.24.0      compiler_3.5.2