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Rmd	ca7205f	pat-s	2019-06-27	add new report
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Rmd	acfd762	pat-s	2019-06-26	wflow_publish(knitr_in(“analysis/filter-correlation.Rmd”), view =

Correlation of filter methods

Spearman’s rank correlation is used since we compare rankings against each other.

VI

Filter methods amongst each other

Warning in bind_rows_(x, .id): Unequal factor levels: coercing to character

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Version	Author	Date
2a058f1	pat-s	2019-06-26

Number of bins of `FSelectorRcpp::information.gain()`

Warning in bind_rows_(x, .id): Unequal factor levels: coercing to character

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Version	Author	Date
2a058f1	pat-s	2019-06-26

NRI

Warning in bind_rows_(x, .id): Unequal factor levels: coercing to character

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Version	Author	Date
2a058f1	pat-s	2019-06-26

HR

Warning in bind_rows_(x, .id): Unequal factor levels: coercing to character

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Warning in bind_rows_(x, .id): binding character and factor vector,
coercing into character vector

Version	Author	Date
2a058f1	pat-s	2019-06-26

R version 3.5.2 (2018-12-20)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

Matrix products: default
BLAS/LAPACK: /opt/spack/opt/spack/linux-centos7-x86_64/gcc-7.3.0/openblas-0.3.5-zncvk4jccaqyfl4z3vszaboeps6hyzta/lib/libopenblas_zen-r0.3.5.so

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8    
 [5] LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8   
 [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] tidyselect_0.2.5     ggcorrplot_0.1.3     kernlab_0.9-27      
 [4] mRMRe_2.0.9          igraph_1.2.4         survival_2.43-3     
 [7] praznik_5.0.0        workflowr_1.4.0      here_0.1            
[10] ggpubr_0.1.6         ggspatial_1.0.3      gdalUtils_2.0.1.7   
[13] getSpatialData_0.0.4 knitr_1.23           rgenoud_5.8-3.0     
[16] parallelMap_1.3      mlrMBO_1.1.2         smoof_1.5.1         
[19] checkmate_1.9.1      BBmisc_1.11          mapview_2.3.0       
[22] stringr_1.4.0        fs_1.2.6             curl_3.3            
[25] mlrCPO_0.3.4-2       mlr_2.14.0.9000      ParamHelpers_1.12   
[28] data.table_1.12.0    magrittr_1.5         future.apply_1.1.0  
[31] future.callr_0.4.0   furrr_0.1.0.9002     future_1.11.1.1     
[34] R.utils_2.8.0        R.oo_1.22.0          R.methodsS3_1.7.1   
[37] glue_1.3.0           purrr_0.3.0          sf_0.7-3            
[40] dplyr_0.8.0.1        hsdar_0.5.2          caret_6.0-81        
[43] ggplot2_3.1.0        lattice_0.20-38      signal_0.7-6        
[46] rootSolve_1.7        rgdal_1.4-3          raster_2.8-19       
[49] sp_1.3-1             drake_7.4.0.9000    

loaded via a namespace (and not attached):
  [1] backports_1.1.3    fastmatch_1.1-0    mapedit_0.4.3     
  [4] plyr_1.8.4         lazyeval_0.2.1     splines_3.5.2     
  [7] storr_1.2.1        crosstalk_1.0.0    listenv_0.7.0     
 [10] leaflet_2.0.2      usethis_1.4.0      digest_0.6.18     
 [13] foreach_1.4.4      htmltools_0.3.6    memoise_1.1.0     
 [16] base64url_1.4      remotes_2.0.2      recipes_0.1.4     
 [19] globals_0.12.4     gower_0.1.2        prettyunits_1.0.2 
 [22] colorspace_1.4-0   xfun_0.5           callr_3.1.1       
 [25] crayon_1.3.4       jsonlite_1.6       iterators_1.0.10  
 [28] gtable_0.2.0       ipred_0.9-8        webshot_0.5.1     
 [31] pkgbuild_1.0.2     scales_1.0.0       DBI_1.0.0         
 [34] Rcpp_1.0.0         viridisLite_0.3.0  xtable_1.8-3      
 [37] units_0.6-2        stats4_3.5.2       lava_1.6.5        
 [40] prodlim_2018.04.18 htmlwidgets_1.3    httr_1.4.0        
 [43] RColorBrewer_1.1-2 pkgconfig_2.0.2    nnet_7.3-12       
 [46] RJSONIO_1.3-1.1    labeling_0.3       rlang_0.3.4       
 [49] reshape2_1.4.3     later_0.8.0        munsell_0.5.0     
 [52] tools_3.5.2        cli_1.1.0          generics_0.0.2    
 [55] devtools_2.0.1     evaluate_0.13      yaml_2.2.0        
 [58] ModelMetrics_1.2.2 processx_3.2.1     satellite_1.0.1   
 [61] nlme_3.1-137       whisker_0.3-2      mime_0.6          
 [64] xml2_1.2.0         compiler_3.5.2     plotly_4.8.0      
 [67] png_0.1-7          e1071_1.7-0.1      testthat_2.0.1    
 [70] RPostgreSQL_0.6-2  tibble_2.0.1       lhs_1.0.1         
 [73] stringi_1.3.1      ps_1.3.0           desc_1.2.0        
 [76] plot3D_1.1.1       Matrix_1.2-15      classInt_0.3-1    
 [79] pillar_1.3.1       httpuv_1.4.5.1     R6_2.4.0          
 [82] promises_1.0.1     sessioninfo_1.1.1  codetools_0.2-16  
 [85] MASS_7.3-51.1      assertthat_0.2.0   pkgload_1.0.2     
 [88] rprojroot_1.3-2    withr_2.1.2        parallel_3.5.2    
 [91] grid_3.5.2         rpart_4.1-13       timeDate_3043.102 
 [94] tidyr_0.8.2        class_7.3-15       rmarkdown_1.13    
 [97] misc3d_0.8-4       mco_1.0-15.1       git2r_0.24.0      
[100] getPass_0.2-2      shiny_1.2.0        lubridate_1.7.4   
[103] base64enc_0.1-3

Correlation of filter methods

Patrick Schratz

Correlation of filter methods

VI

Filter methods amongst each other

Number of bins of FSelectorRcpp::information.gain()

NRI

HR

Number of bins of `FSelectorRcpp::information.gain()`