Last updated: 2019-05-28

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Knit directory: 2018-model-comparison/

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Introduction

This reports is for debugging purposes only. Its purpose was to identify the predictors responsbile for the artifacts in the prediction maps.

“ph” was found to be the variable causing the artifacts.

Random Forest was used as the algorithm in this case.

Prediction Maps

No Temperature

No Precipitation

##No hail

No ph

No soil

No lithology

No slope

No pisr


R version 3.5.1 (2018-07-02)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

Matrix products: default
BLAS: /opt/spack/opt/spack/linux-centos7-x86_64/gcc-7.3.0/r-3.5.1-b4xhm3pook4yl4olk6ttnovnyttdpkhe/rlib/R/lib/libRblas.so
LAPACK: /opt/spack/opt/spack/linux-centos7-x86_64/gcc-7.3.0/r-3.5.1-b4xhm3pook4yl4olk6ttnovnyttdpkhe/rlib/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_GB.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_GB.UTF-8        LC_COLLATE=en_GB.UTF-8    
 [5] LC_MONETARY=en_GB.UTF-8    LC_MESSAGES=en_GB.UTF-8   
 [7] LC_PAPER=en_GB.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] tidyselect_0.2.5    workflowr_1.3.0     here_0.1           
 [4] kableExtra_1.1.0    ggExtra_0.8         ggrepel_0.8.0      
 [7] reporttools_1.1.2   xtable_1.8-3        cowplot_0.9.3      
[10] hrbrthemes_0.6.0    ggpubr_0.2          future.callr_0.4.0 
[13] furrr_0.1.0.9002    future_1.11.1.1     ggsci_2.9          
[16] clustermq_0.8.6     ggspatial_1.0.3     ggplot2_3.0.0      
[19] rgenoud_5.8-3.0     fs_1.2.6            curl_3.2           
[22] R.utils_2.7.0       R.oo_1.22.0         R.methodsS3_1.7.1  
[25] GSIF_0.5-5          stringr_1.3.1       RSAGA_1.3.0        
[28] plyr_1.8.4          shapefiles_0.7      foreign_0.8-71     
[31] gstat_1.1-6         glue_1.3.0          rasterVis_0.45     
[34] latticeExtra_0.6-28 RColorBrewer_1.1-2  lattice_0.20-35    
[37] raster_2.8-19       viridis_0.5.1       viridisLite_0.3.0  
[40] rgdal_1.4-3         sp_1.3-1            tibble_2.0.1       
[43] forcats_0.3.0       lwgeom_0.1-6        dplyr_0.8.0.1      
[46] sf_0.7-4            parallelMap_1.3     purrr_0.2.5        
[49] mlrMBO_1.1.2        smoof_1.5.1         checkmate_1.8.5    
[52] BBmisc_1.11         magrittr_1.5        mlr_2.13.9000      
[55] ParamHelpers_1.11   drake_7.3.0.9000   

loaded via a namespace (and not attached):
  [1] backports_1.1.2   Hmisc_4.2-0       fastmatch_1.1-0  
  [4] igraph_1.2.2      lazyeval_0.2.1    splines_3.5.1    
  [7] storr_1.2.1       listenv_0.7.0     digest_0.6.15    
 [10] htmltools_0.3.6   base64url_1.4     cluster_2.0.7-1  
 [13] readr_1.3.1       globals_0.12.4    extrafont_0.17   
 [16] extrafontdb_1.0   xts_0.11-0        colorspace_1.3-2 
 [19] rvest_0.3.2       pixmap_0.4-11     xfun_0.7         
 [22] callr_3.1.0       crayon_1.3.4      jsonlite_1.5     
 [25] hexbin_1.27.2     survival_2.42-3   zoo_1.8-3        
 [28] gtable_0.2.0      webshot_0.5.1     Rttf2pt1_1.3.7   
 [31] abind_1.4-5       scales_1.0.0      DBI_1.0.0        
 [34] miniUI_0.1.1.1    Rcpp_1.0.0        plotrix_3.7-4    
 [37] spData_0.2.9.0    htmlTable_1.12    units_0.6-2      
 [40] Formula_1.2-3     intervals_0.15.1  dismo_1.1-4      
 [43] htmlwidgets_1.3   httr_1.3.1        FNN_1.1          
 [46] aqp_1.17          acepack_1.4.1     pkgconfig_2.0.2  
 [49] reshape_0.8.8     XML_3.98-1.16     nnet_7.3-12      
 [52] RJSONIO_1.3-1.1   labeling_0.3      later_0.7.5      
 [55] rlang_0.3.1       munsell_0.5.0     tools_3.5.1      
 [58] cli_1.1.0         evaluate_0.13     yaml_2.2.0       
 [61] processx_3.2.1    knitr_1.23        mime_0.5         
 [64] whisker_0.3-2     xml2_1.2.0        compiler_3.5.1   
 [67] rstudioapi_0.10   png_0.1-7         prettymapr_0.2.2 
 [70] plotly_4.8.0      e1071_1.7-0       spacetime_1.2-2  
 [73] lhs_0.16          stringi_1.2.4     ps_1.2.1         
 [76] gdtools_0.1.7     plot3D_1.1.1      Matrix_1.2-14    
 [79] classInt_0.2-3    rosm_0.2.2        pillar_1.3.1     
 [82] plotKML_0.5-9     data.table_1.11.8 httpuv_1.4.5     
 [85] colorRamps_2.3    R6_2.2.2          promises_1.0.1   
 [88] gridExtra_2.3     codetools_0.2-15  MASS_7.3-50      
 [91] assertthat_0.2.0  rprojroot_1.3-2   withr_2.1.2      
 [94] hms_0.4.2         parallel_3.5.1    grid_3.5.1       
 [97] rpart_4.1-13      tidyr_0.8.2       class_7.3-14     
[100] rmarkdown_1.12    misc3d_0.8-4      mco_1.0-15.1     
[103] git2r_0.23.0      shiny_1.2.0       base64enc_0.1-3