Last updated: 2022-03-10
Checks: 2 0
Knit directory: Amphibolis_Posidonia_Comparison/
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 02708fd | Philipp Bayer | 2022-03-10 | New: fancy MSAs!! |
| html | 1425b09 | Philipp Bayer | 2022-03-09 | Build site. |
| Rmd | 45b4b42 | Philipp Bayer | 2022-03-09 | add better groups |
| html | 2243fa6 | Philipp Bayer | 2022-02-23 | muh files |
| html | 1a19f93 | Philipp Bayer | 2022-02-23 | Build site. |
| html | 9b59467 | Philipp Bayer | 2022-02-23 | Rewrite Orthofinder analysis |
| html | b8c0df3 | Philipp Bayer | 2022-02-22 | Build site. |
| Rmd | 709a40d | Philipp Bayer | 2022-02-22 | wflow_publish(“analysis/index.Rmd”) |
| html | c0db4a5 | Philipp Bayer | 2021-10-07 | Build site. |
| Rmd | 08b28ea | Philipp Bayer | 2021-10-07 | wflow_publish(files = c("analysis/*")) |
| html | 76c8918 | Philipp Bayer | 2021-04-15 | Build site. |
| Rmd | 49dcbb8 | Philipp Bayer | 2021-04-15 | wflow_publish(files = list.files(“analysis/”, pattern = "*Rmd", |
| Rmd | 9e449bb | Philipp Bayer | 2021-04-14 | Add missing files |
| html | 9e449bb | Philipp Bayer | 2021-04-14 | Add missing files |
| html | 9e91425 | Philipp Bayer | 2021-04-14 | Build site. |
| Rmd | fa39572 | Philipp Bayer | 2021-04-14 | wflow_publish(c(“analysis/plot.Rmd”, "analysis/_site.yml“,”analysis/index.Rmd"), |
| Rmd | a5be915 | Philipp Bayer | 2021-04-14 | Start workflowr project. |
This website collects comparisons of Amphibolis and Posidonia comparative analyses.
Repeat comparison plots - Comparing genome sizes and repeat/TE content
Phylogenies - plotting just phylogenies
Clustering results - analysing Orthofinder clustering results
R gene plotting - making phylogenies and showing R-gene number differences
Gene Loss comparison by reads - making heatmaps and barcharts to compare read alignments
GO enrichment - running topGO and REVIGO to make nice plots of GO-enrichment
GO and Ortho - merging plots from GO enrichment and Orthofinder analysis
MSA visualisation - visualising MSAs and phylogenies for gene clusters of interest (SOS3)