Last updated: 2023-07-28
Checks: 2 0
Knit directory: SuperCellCyto-analysis/
This reproducible R Markdown analysis was created with workflowr (version 1.7.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.
The results in this page were generated with repository version 402358b. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.
Note that you need to be careful to ensure that all relevant files for
the analysis have been committed to Git prior to generating the results
(you can use wflow_publish
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file, but you know if there are other scripts or data files that it
depends on. Below is the status of the Git repository when the results
were generated:
Ignored files:
Ignored: .DS_Store
Ignored: .Rproj.user/
Ignored: code/.DS_Store
Ignored: data/.DS_Store
Ignored: data/bodenmiller_cytof/
Ignored: data/explore_supercell_purity_clustering/
Ignored: data/haas_bm/
Ignored: data/oetjen_bm_dataset/
Ignored: data/trussart_cytofruv/
Ignored: output/.DS_Store
Ignored: output/bodenmiller_cytof/
Ignored: output/explore_supercell_purity_clustering/
Ignored: output/label_transfer/
Ignored: output/oetjen_b_cell_panel/
Ignored: output/trussart_cytofruv/
Untracked files:
Untracked: README.html
Untracked: analysis/ref.bib
Untracked: code/README.html
Untracked: code/b_cell_identification/
Untracked: code/batch_correction/
Untracked: code/bodenmiller_data/
Untracked: code/explore_supercell_purity_clustering/
Untracked: code/label_transfer/
Untracked: data/README.html
Untracked: output/README.html
Unstaged changes:
Modified: .gitignore
Modified: README.md
Modified: _workflowr.yml
Modified: analysis/_site.yml
Modified: code/README.md
Modified: data/README.md
Modified: output/README.md
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the repository in which changes were
made to the R Markdown (analysis/license.Rmd
) and HTML
(docs/license.html
) files. If you’ve configured a remote
Git repository (see ?wflow_git_remote
), click on the
hyperlinks in the table below to view the files as they were in that
past version.
File | Version | Author | Date | Message |
---|---|---|---|---|
Rmd | 402358b | Givanna Putri | 2023-07-28 | wflow_publish(c("analysis/*Rmd")) |
Rmd | aeae8b0 | Givanna Putri | 2023-07-28 | Start workflowr project. |
The code in this analysis is covered by the GPL3 license and the written content is covered by a Creative Commons CC-BY license.