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Last updated: 2019-03-06
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Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.Ignored files: Ignored: .Rhistory Ignored: .Rproj.user/ Untracked files: Untracked: code/alldata_compiler.R Untracked: code/contab_maker.R Untracked: code/mut_excl_genes_datapoints.R Untracked: code/mut_excl_genes_generator.R Untracked: code/quadratic_solver.R Untracked: code/simresults_generator.R Untracked: data/All_Data_V2.csv Untracked: data/alkati_growthcurvedata.csv Untracked: data/alkati_growthcurvedata_popdoublings.csv Untracked: data/alkati_melanoma_vemurafenib_figure_data.csv Untracked: data/all_data.csv Untracked: data/tcga_luad_expression/ Untracked: data/tcga_skcm_expression/ Untracked: docs/figure/Filteranalysis.Rmd/ Untracked: docs/figure/baf3_alkati_transformations.Rmd/ Untracked: output/alkati_filtercutoff_allfilters.csv Untracked: output/alkati_luad_exonimbalance.pdf Untracked: output/alkati_mtn_pval_fig2B.pdf Untracked: output/alkati_skcm_exonimbalance.pdf Untracked: output/all_data_luad.csv Untracked: output/all_data_luad_egfr.csv Untracked: output/all_data_skcm.csv Untracked: output/baf3_alkati_figure_deltaadjusted_doublings.pdf Untracked: output/baf3_barplot.pdf Untracked: output/baf3_elisa_barplot.pdf Untracked: output/egfr_luad_exonimbalance.pdf Untracked: output/fig2b2_filtercutoff_atinras_totalalk.pdf Untracked: output/fig2b_filtercutoff_atibraf.pdf Untracked: output/fig2b_filtercutoff_atinras.pdf Untracked: output/luad_alk_exon_expression.csv Untracked: output/luad_egfr_exon_expression.csv Untracked: output/melanoma_vemurafenib_fig.pdf Untracked: output/skcm_alk_exon_expression.csv
Expand here to see past versions:
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| html | 755da19 | haiderinam | 2019-02-20 | Build site. |
| html | 6a85fdc | haiderinam | 2019-02-20 | Build site. |
| Rmd | ead5e6b | haiderinam | 2019-02-20 | Fixed link for EGFR Expression Analysis |
| html | aff917b | haiderinam | 2019-02-20 | Build site. |
| Rmd | 6fec622 | haiderinam | 2019-02-20 | Added EGFR Expression Analysis |
| html | 227aa37 | haiderinam | 2019-02-20 | Build site. |
| Rmd | d60f046 | haiderinam | 2019-02-20 | Changed theme # 2 |
| html | 4d0be94 | haiderinam | 2019-02-20 | Build site. |
| html | be5169a | haiderinam | 2019-02-20 | Build site. |
| Rmd | 66533e8 | haiderinam | 2019-02-20 | Added images attempt #2 |
| html | 5ce6384 | haiderinam | 2019-02-19 | Build site. |
| Rmd | d5d11e6 | haiderinam | 2019-02-19 | Added images #2 |
| html | 5f668d9 | haiderinam | 2019-02-19 | Build site. |
| Rmd | efc8178 | haiderinam | 2019-02-19 | Added images and descriptions |
| html | 0b5f5cb | haiderinam | 2019-02-19 | Build site. |
| html | 4b082e4 | haiderinam | 2019-02-19 | Build site. |
| html | 08e9438 | haiderinam | 2019-02-17 | Build site. |
| Rmd | 33e1acb | haiderinam | 2019-02-17 | Published Analysis on ALK expression levels #3 |
| html | dfdb600 | haiderinam | 2019-02-17 | Build site. |
| html | 0cad4ec | haiderinam | 2019-02-16 | Build site. |
| html | 5d432fb | haiderinam | 2019-02-11 | Build site. |
| Rmd | 4c89be3 | haiderinam | 2019-02-11 | Publish the initial files for myproject |
| html | d46a9cb | haiderinam | 2019-02-11 | Build site. |
| Rmd | 644865d | haiderinam | 2019-02-11 | Start workflowr project. |
Pairwise Comparisons of Conditional Selection
Click here to see subsampling simulations on ALKATI data.
Click here to see my results on ALKATI filter cutoff analyses.
Click here to see my results on ALK-expression in SKCM.
Or click here to see my analysis code for ALK-expression in SKCM.
Click here to see my results on ALK expression in LUAD.
Click here to see my results on EGFR expression in LUAD.
Click here to see ALKATI transformation data in Ba/F3s showing that it is not sufficient in melanoma.
Click here to see ALKATI melanoma cell line expression data analysis showing that ALKATI is necessary in melanoma.
Click here to be redirected to the github page that contains all my data.
What’s in each directory:
- Data: contains data downloaded from internet
- Output: contains data that your code makes
- Analysis: contains your Rmarkdown files that are converted to PDFs
- Code: contains .R files that are functions that your Rmd files in the analysis folder goes off of.
This reproducible R Markdown analysis was created with workflowr 1.1.1