Last updated: 2018-11-02

workflowr checks: (Click a bullet for more information)

  • ✔ R Markdown file: up-to-date

    Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

  • ✔ Repository version: 42be16c

    Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.

    Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 
    
Untracked files:
    Untracked:  plots/180504_alignment.pdf

Unstaged changes:
    Modified:   plots/180504_pca_tsne.pdf
    Modified:   plots/supplementary_figures/sfig_180504_alignment-discardedcells.pdf
    Modified:   plots/supplementary_figures/sfig_180504_biweightplots.pdf
    Modified:   plots/supplementary_figures/sfig_180504_pcelbow.pdf
    Modified:   plots/supplementary_figures/sfig_180504_qcplots.pdf
    Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
Expand here to see past versions:
    File Version Author Date Message
    Rmd 42be16c PytrikFolkertsma 2018-11-02 wflow_publish(c(“analysis/index.Rmd”))
    html 17b0321 PytrikFolkertsma 2018-11-02 Build site.
    Rmd 20adbe0 PytrikFolkertsma 2018-11-02 wflow_publish(c(“analysis/index.Rmd”))
    html 91f2c9c PytrikFolkertsma 2018-11-02 Build site.
    Rmd f8fe591 PytrikFolkertsma 2018-11-02 wflow_publish(c(“analysis/index.Rmd”))
    html eaa7e4a PytrikFolkertsma 2018-11-02 Build site.
    Rmd 120215c PytrikFolkertsma 2018-11-02 general analysis + alignment
    html d810265 PytrikFolkertsma 2018-10-31 Build site.
    html 57c44d6 PytrikFolkertsma 2018-10-31 Build site.
    html 1f7e0da PytrikFolkertsma 2018-10-30 Build site.
    html 3395a74 PytrikFolkertsma 2018-10-26 first commit
    Rmd cf98ea8 PytrikFolkertsma 2018-10-26 Start workflowr project.

Notebooks for 180504 analysis:   1. General analysis   2. Alignment  

This reproducible R Markdown analysis was created with workflowr 1.1.1