Last updated: 2024-04-12

Checks: 2 0

Knit directory: ATAC_learning/

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R Markdown file: up-to-date

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Repository version: caecf0b

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Ignored files:
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    Ignored:    data/All_merged_peaks.tsv
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    Ignored:    data/n45_bedfiles/
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    Ignored:    data/other_papers/
    Ignored:    data/peakAnnoList_1.RDS
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    Ignored:    data/peakAnnoList_24_full.RDS
    Ignored:    data/peakAnnoList_24_n45.RDS
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Untracked files:
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    Untracked:  ESR_1_plot.pdf
    Untracked:  Firstcorr plotATAC.pdf
    Untracked:  IND1_2_3_6_corrplot.pdf
    Untracked:  LR_3_plot.pdf
    Untracked:  NR_1_plot.pdf
    Untracked:  analysis/my_hc_filt_counts.csv
    Untracked:  code/IGV_snapshot_code.R
    Untracked:  code/TSSE.R
    Untracked:  code/corMotifcustom.R
    Untracked:  code/just_for_Fun.R
    Untracked:  code/toplist_assembly.R
    Untracked:  lcpm_filtered_corplot.pdf
    Untracked:  log2cpmfragcount.pdf
    Untracked:  output/cormotif_probability_45_list.csv
    Untracked:  output/cormotif_probability_all_6_list.csv
    Untracked:  splited/
    Untracked:  trimmed_Ind1_75DA24h_S7.nodup.fragment.size.distribution.pdf
    Untracked:  trimmed_Ind1_75DA3h_S1.nodup.fragment.size.distribution.pdf

Unstaged changes:
    Modified:   analysis/CorMotif_data_n45.Rmd
    Modified:   analysis/Peak_analysis.Rmd
    Modified:   analysis/Smaller_set_DAR.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd caecf0b reneeisnowhere 2024-04-12 adding new page
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Rmd d455684 reneeisnowhere 2024-03-21 update to index
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Rmd 2b7231d reneeisnowhere 2024-03-19 new links
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Rmd e9a7e59 reneeisnowhere 2024-02-27 adding new pages
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Rmd 0301e92 reneeisnowhere 2023-10-16 making a new project
Rmd 701c573 reneeisnowhere 2023-10-16 Start workflowr project.

ATAC-seq of iPSC-derived cardiomyocytes

This page is often under construction, due to the long list of analysis I am doing.