Last updated: 2024-10-07
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Knit directory: ATAC_learning/
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Unstaged changes:
Modified: analysis/CorMotif_data_n45.Rmd
Modified: analysis/Enhancer_files_ff.Rmd
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Modified: analysis/TE_analysis.Rmd
Modified: analysis/final_four_analysis.Rmd
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 85469bc | reneeisnowhere | 2024-10-07 | adding pdf |
| html | 6dfe33e | reneeisnowhere | 2024-09-23 | Build site. |
| Rmd | 365e557 | reneeisnowhere | 2024-09-23 | updated group of eight based on 4 individuals |
| html | 23374bd | reneeisnowhere | 2024-09-13 | Build site. |
| Rmd | 617aa1e | reneeisnowhere | 2024-09-13 | updated peaklist filtering fixed |
| Rmd | ff2f378 | reneeisnowhere | 2024-09-12 | fixing additional calculation problems |
| Rmd | b7f8719 | reneeisnowhere | 2024-09-12 | fixing additional calculation problems |
| Rmd | 1ae2a63 | reneeisnowhere | 2024-09-10 | updates |
| html | 6d65dd6 | reneeisnowhere | 2024-09-09 | Build site. |
| Rmd | cc49b3b | reneeisnowhere | 2024-09-09 | updated with new peak file |
| Rmd | 6e09040 | reneeisnowhere | 2024-09-08 | updated with new peaks |
library(tidyverse)
library(kableExtra)
library(broom)
library(RColorBrewer)
library(ChIPseeker)
library("TxDb.Hsapiens.UCSC.hg38.knownGene")
library("org.Hs.eg.db")
library(rtracklayer)
library(edgeR)
library(ggfortify)
library(limma)
library(readr)
library(BiocGenerics)
library(gridExtra)
library(VennDiagram)
library(scales)
library(BiocParallel)
library(ggpubr)
library(devtools)
library(biomaRt)
library(eulerr)
library(smplot2)
library(genomation)
library(ggsignif)
library(plyranges)
library(ggrepel)
library(epitools)This is where I pull in the repeatmasker file taken from UCSC
genomebrowser, the peaks assigned with the closest expressed genes as
‘neargenes’ by TSS, the same peaks list, only condensing to unique peaks
(some are assigned to two neargene), I call the collapsed_peaks and the
peaks assigned to each MRC (EAR, etc…).
With the TSS data and the collapsed data, I made granges objects. I also
separate out the LINEs, SINEs, LTRs, DNAs, and Retroposons from the
repeatmasker to make granges objects from those sets.
repeatmasker <- read.delim("data/other_papers/repeatmasker.tsv")### With new TSS_ngdata frame
TSS_NG_data <- read_delim("data/Final_four_data/TSS_assigned_NG.txt",
delim = "\t", escape_double = FALSE,
trim_ws = TRUE)
Collapsed_peaks <- read_delim("data/Final_four_data/collapsed_new_peaks.txt",
delim = "\t",
escape_double = FALSE,
trim_ws = TRUE)
reClass_list <- repeatmasker %>%
distinct(repClass)
Line_repeats <- repeatmasker %>%
dplyr::filter(repClass == "LINE") %>%
makeGRangesFromDataFrame(., keep.extra.columns = TRUE, seqnames.field = "genoName", start.field = "genoStart", end.field = "genoEnd",starts.in.df.are.0based=TRUE)
Sine_repeats <- repeatmasker %>%
dplyr::filter(repClass == "SINE") %>%
makeGRangesFromDataFrame(., keep.extra.columns = TRUE, seqnames.field = "genoName", start.field = "genoStart", end.field = "genoEnd",starts.in.df.are.0based=TRUE)
LTR_repeats <- repeatmasker %>%
dplyr::filter(repClass == "LTR") %>%
makeGRangesFromDataFrame(., keep.extra.columns = TRUE, seqnames.field = "genoName", start.field = "genoStart", end.field = "genoEnd",starts.in.df.are.0based=TRUE)
DNA_repeats <- repeatmasker %>%
dplyr::filter(repClass == "DNA") %>%
makeGRangesFromDataFrame(., keep.extra.columns = TRUE, seqnames.field = "genoName", start.field = "genoStart", end.field = "genoEnd",starts.in.df.are.0based=TRUE)
retroposon_repeats <- repeatmasker %>%
dplyr::filter(repClass == "Retroposon") %>%
makeGRangesFromDataFrame(., keep.extra.columns = TRUE, seqnames.field = "genoName", start.field = "genoStart", end.field = "genoEnd",starts.in.df.are.0based=TRUE)
all_TEs_gr <- repeatmasker %>%
makeGRangesFromDataFrame(., keep.extra.columns = TRUE, seqnames.field = "genoName", start.field = "genoStart", end.field = "genoEnd",starts.in.df.are.0based=TRUE)
peakAnnoList_ff_motif <- readRDS("data/Final_four_data/peakAnnoList_ff_motif.RDS")
background_peaks <- as.data.frame(peakAnnoList_ff_motif$background)
EAR_df <- as.data.frame(peakAnnoList_ff_motif$EAR)
# EAR_df_gr <- EAR_df %>% GRanges()
ESR_df <- as.data.frame(peakAnnoList_ff_motif$ESR)
# ESR_df_gr <-ESR_df %>% GRanges()
LR_df <- as.data.frame(peakAnnoList_ff_motif$LR)
# LR_df_gr <-LR_df %>% GRanges()
NR_df <- as.data.frame(peakAnnoList_ff_motif$NR)
# NR_df_gr <-NR_df %>% GRanges()
TSS_data_gr <- TSS_NG_data %>%
# dplyr::filter(chr != "chrX") %>%
dplyr::filter(chr != "chrY") %>%
dplyr::filter(Peakid %in% background_peaks$Peakid) %>%
GRanges()
Col_TSS_data_gr <- Collapsed_peaks %>%
# dplyr::filter(chr != "chrX") %>%
dplyr::filter(chr != "chrY") %>%
dplyr::filter(Peakid %in% background_peaks$Peakid) %>%
GRanges()this code contains the fill functions for each of the plots that needed similar colors.
# scale fill repeat, 2nd set ----------------------------------------------
rep_other_names<- repeatmasker %>%
distinct(repClass) %>%
rbind("Other")
scale_fill_repeat <- function(...){
ggplot2:::manual_scale(
'fill',
values = setNames(c( "#8DD3C7",
"#FFFFB3",
"#BEBADA" ,
"#FB8072",
"#80B1D3",
"#FDB462",
"#B3DE69",
"#FCCDE5",
"#D9D9D9",
"#BC80BD",
"#CCEBC5",
"pink4",
"cornflowerblue",
"chocolate",
"brown",
"green",
"yellow4",
"purple",
"darkorchid4",
"coral4",
"darkolivegreen4",
"darkorange",
"darkgrey"), unique(rep_other_names$repClass)),
...
)
}
# scale fill LTRs ---------------------------------------------------------
LTR_df <- LTR_repeats %>%
as.data.frame() %>%
mutate(repFamily=factor(repFamily))
scale_fill_LTRs <- function(...){
ggplot2:::manual_scale(
'fill',
values = setNames(c( "#8DD3C7",
"#FFFFB3",
"#BEBADA" ,
"#FB8072",
"#80B1D3",
"#FDB462",
"#B3DE69",
"#FCCDE5",
"#D9D9D9",
"#BC80BD",
"#CCEBC5",
"pink4",
"cornflowerblue",
"chocolate",
"brown",
"green",
"yellow4",
"purple",
"darkorchid4",
"coral4",
"darkolivegreen4",
"darkorange"), unique(LTR_df$repFamily)),
...
)
}
scale_fill_DNA_family <- function(...){
ggplot2:::manual_scale(
'fill',
values = setNames(c( "#8DD3C7", "#FFFFB3", "#BEBADA" ,"#FB8072", "#80B1D3", "#FDB462", "#B3DE69", "#FCCDE5", "purple4"), unique(DNA_family$repFamily)),
...
)
}
# # scale fill repeat first -------------------------------------------------
#
# scale_fill_repeat <- function(...){
# ggplot2:::manual_scale(
# 'fill',
# values = setNames(c( "#8DD3C7",
# "#FFFFB3",
# "#BEBADA" ,
# "#FB8072",
# "#80B1D3",
# "#FDB462",
# "#B3DE69",
# "#FCCDE5",
# "#D9D9D9",
# "#BC80BD",
# "#CCEBC5",
# "pink4",
# "cornflowerblue",
# "chocolate",
# "brown",
# "green",
# "yellow4",
# "purple",
# "darkorchid4",
# "coral4",
# "darkolivegreen4",
# "darkorange"), unique(repeatmasker$repClass)),
# ...
# )
# }
# scale lines -------------------------------------------------------------
Line_df <- Line_repeats %>%
as.data.frame() %>%
mutate(repFamily=factor(repFamily))
scale_fill_lines <- function(...){
ggplot2:::manual_scale(
'fill',
values = setNames(c( "#8DD3C7",
"#FFFFB3",
"#BEBADA" ,
"#FB8072",
"#80B1D3",
"#FDB462",
"#B3DE69",
"#FCCDE5",
"#D9D9D9",
"#BC80BD",
"#CCEBC5",
"pink4",
"cornflowerblue",
"chocolate",
"brown",
"green",
"yellow4",
"purple",
"darkorchid4",
"coral4",
"darkolivegreen4",
"darkorange"), unique(Line_df$repFamily)),
...
)
}
# scale fill L2 family ----------------------------------------------------
L2_line_df<- Line_df %>%
dplyr::filter(repFamily=="L2")
scale_fill_L2 <- function(...){
ggplot2:::manual_scale(
'fill',
values = setNames(c( "#8DD3C7",
"#FFFFB3",
"#BEBADA" ,
"#FB8072",
"#80B1D3",
"#FDB462",
"#B3DE69",
"#FCCDE5",
"#D9D9D9",
"#BC80BD",
"#CCEBC5",
"pink4",
"cornflowerblue",
"chocolate",
"brown",
"green",
"yellow4",
"purple",
"darkorchid4",
"coral4",
"darkolivegreen4",
"darkorange"), unique(L2_line_df$repName)),
...
)
}
# scale fill sines --------------------------------------------------------
Sine_df <- Sine_repeats %>%
as.data.frame() %>%
mutate(repFamily=factor(repFamily))
scale_fill_sines <- function(...){
ggplot2:::manual_scale(
'fill',
values = setNames(c( "#8DD3C7",
"#FFFFB3",
"#BEBADA" ,
"#FB8072",
"#80B1D3",
"#FDB462",
"#B3DE69",
"#FCCDE5",
"#D9D9D9",
"#BC80BD",
"#CCEBC5",
"pink4",
"cornflowerblue",
"chocolate",
"brown",
"green",
"yellow4",
"purple",
"darkorchid4",
"coral4",
"darkolivegreen4",
"darkorange"), unique(Sine_df$repFamily)),
...
)
}
# scale fill DNAs ---------------------------------------------------------
DNA_df <- DNA_repeats %>%
as.data.frame() %>%
mutate(repFamily=factor(repFamily))
scale_fill_DNAs <- function(...){
ggplot2:::manual_scale(
'fill',
values = setNames(c( "#8DD3C7",
"#FFFFB3",
"#BEBADA" ,
"#FB8072",
"#80B1D3",
"#FDB462",
"#B3DE69",
"#FCCDE5",
"#D9D9D9",
"#BC80BD",
"#CCEBC5",
"pink4",
"cornflowerblue",
"chocolate",
"brown",
"green",
"yellow4",
"purple",
"darkorchid4",
"coral4",
"darkolivegreen4",
"darkorange",
"blue",
"grey",
"lightgrey"), unique(DNA_df$repFamily)),
...
)
}
# scale fill retroposons --------------------------------------------------
retroposon_df <- retroposon_repeats %>%
as.data.frame() %>%
mutate(repName=factor(repName))
scale_fill_retroposons <- function(...){
ggplot2:::manual_scale(
'fill',
values = setNames(c( "#8DD3C7",
"#FFFFB3",
"#BEBADA" ,
"#FB8072",
"#80B1D3",
"#FDB462",
"#B3DE69",
"#FCCDE5",
"#D9D9D9",
"#BC80BD",
"#CCEBC5",
"pink4",
"cornflowerblue",
"chocolate",
"brown",
"green",
"yellow4",
"purple",
"darkorchid4",
"coral4",
"darkolivegreen4",
"darkorange"), unique(retroposon_df$repName)),
...
)
}The code below uses the TE data sets to create dataframes that contain all peaks that overlap a TE. Additionally, I wanted to know size distribution of the overlaps(width) between TEs and my peaks, the size of the TEs and their size distribution, and the size distribution of my peaks. This was to determine a cutoff across TEs to minimize size bias. We used this data to apply a inclusion stringency cutoff for TEs of >50% of the full TE needed to be covered by a peak to call the peak “TE-containing”. In the plots, the median of each density distribution is shown by the dotted line.
all_TEs_gr %>%
as.data.frame() %>%
mutate(repClass=factor(repClass)) %>%
dplyr::filter(repClass=="LINE") %>%
ggplot(., aes(x=width))+
geom_density(aes(fill=repClass, alpha = 0.5))+
geom_vline(aes(xintercept = median(width)), linetype = 2)+
theme_classic()+
ggtitle("Distribution of lengths of all LINEs across human genome",subtitle = " limited x axis")+
coord_cartesian(xlim= c(0,2500))all_TEs_gr %>%
as.data.frame() %>%
mutate(repClass=factor(repClass)) %>%
dplyr::filter(repClass=="SINE") %>%
ggplot(., aes(x=width))+
geom_density(aes(fill=repClass, alpha = 0.5))+
geom_vline(aes(xintercept = median(width)), linetype = 2)+
theme_classic()+
ggtitle("Distribution of lengths of all SINEs across human genome")all_TEs_gr %>%
as.data.frame() %>%
mutate(repClass=factor(repClass)) %>%
dplyr::filter(repClass=="LTR") %>%
ggplot(., aes(x=width))+
geom_density(aes(fill=repClass, alpha = 0.5))+
geom_vline(aes(xintercept = median(width)), linetype = 2)+
theme_classic()+
ggtitle("Distribution of lengths of all LTRs across human genome",subtitle = " limited x axis")+
coord_cartesian(xlim= c(0,2500))all_TEs_gr %>%
as.data.frame() %>%
mutate(repClass=factor(repClass)) %>%
dplyr::filter(repClass=="DNA") %>%
ggplot(., aes(x=width))+
geom_density(aes(fill=repClass, alpha = 0.5))+
geom_vline(aes(xintercept = median(width)), linetype = 2)+
theme_classic()+
ggtitle("Distribution of lengths of all DNA-TEs across human genome",subtitle = " limited x axis")+
coord_cartesian(xlim= c(0,2500))all_TEs_gr %>%
as.data.frame() %>%
mutate(repClass=factor(repClass)) %>%
dplyr::filter(repClass=="Retroposon") %>%
ggplot(., aes(x=width))+
geom_density(aes(fill=repClass,alpha = 0.5))+
geom_vline(aes(xintercept = median(width)), linetype = 2)+
theme_classic()+
ggtitle("Distribution of lengths of all Retroposons across human genome",subtitle = " limited x axis")+
coord_cartesian(xlim= c(0,2500))all_TEs_gr %>%
as.data.frame() %>%
dplyr::select(repClass, width) %>%
# dplyr::filter(repClass=="LTR") %>%
group_by(repClass) %>%
summarise(med.width=median(width),mean.width=mean(width)) %>%
kable(., caption="Table 1: Summary of mean and median length of each TE Class") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14)| repClass | med.width | mean.width |
|---|---|---|
| DNA | 155.0 | 210.61264 |
| DNA? | 125.0 | 137.59542 |
| LINE | 219.0 | 421.99752 |
| LTR | 329.0 | 371.36349 |
| LTR? | 170.0 | 208.63493 |
| Low_complexity | 44.0 | 61.55669 |
| RC | 171.0 | 210.89231 |
| RC? | 144.0 | 150.47242 |
| RNA | 165.0 | 163.94730 |
| Retroposon | 646.0 | 776.24171 |
| SINE | 258.0 | 221.43075 |
| SINE? | 83.5 | 74.34211 |
| Satellite | 496.0 | 8741.48243 |
| Simple_repeat | 36.0 | 55.83912 |
| Unknown | 119.0 | 136.70621 |
| rRNA | 86.0 | 140.04608 |
| scRNA | 99.0 | 96.07143 |
| snRNA | 77.5 | 79.82394 |
| srpRNA | 136.0 | 169.81834 |
| tRNA | 69.0 | 60.12893 |
Col_TSS_data_gr %>%
as.data.frame %>%
ggplot(., aes(x=width))+
geom_density(color="darkblue",fill="lightblue",aes(alpha = 0.5))+
geom_vline(data=Col_TSS_data_gr$width., aes(xintercept = median(width)), linetype = 2)+
theme_classic()+
ggtitle("Distribution of peak length (bps) across all experimentally derived peaks",subtitle = " limited x axis")+
coord_cartesian(xlim= c(0,2500))fullDF_overlap <- join_overlap_intersect(TSS_data_gr,all_TEs_gr)
fullDF_overlap %>%
as.data.frame() %>%
group_by(repClass) %>%
tally %>%
kable(., caption="Table 2: Count of peaks by TE class; overlap 1 bp or greater") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14)
subsetByOverlaps(TSS_data_gr,all_TEs_gr) %>% as.data.frame %>%
ggplot(., aes(x=width))+
geom_density(color="darkblue",fill="lightblue",aes(alpha = 0.5))+
geom_vline(aes(xintercept = median(width)), linetype = 2)+
theme_classic()+
ggtitle("Distribution of overlaps between all TEs and all my peaks",subtitle = " limited x axis")+
coord_cartesian(xlim= c(0,2500))
### This is how I subset only those peaks who cover >50% of TEs
# hits <- findOverlaps(TSS_data_gr,all_TEs_gr)
# overlaps <- pintersect(TSS_data_gr[queryHits(hits)], all_TEs_gr[subjectHits(hits)])
# percentOverlap <- width(overlaps) / width(all_TEs_gr[subjectHits(hits)])
# hits <- hits[percentOverlap > 0.5]
# ### THis actually did not work well---I ended up losing data. What I wanted was a data frame that had metadata from both the TE overlap and the peak metadata, so I could easily sort and manipulation.
# testingol <- TSS_data_gr[queryHits(hits)]
# testingol %>% as.data.frame() %>%
# left_join(., (fullDF_overlap %>% as.data.frame(.)), by =c("seqnames"="seqnames","start"="start","end"="end","Peakid"="Peakid", "NG_start"="NG_start", "end_position"="end_position", "entrezgene_id"="entrezgene_id", "ensembl_gene_id"="ensembl_gene_id","dist_to_NG"="dist_to_NG", "width"="width", "strand"="strand", "hgnc_symbol" = "hgnc_symbol")) %>%
# group_by(repClass) %>%
# tally %>%
# kable(., caption=" Table 3: Count of peaks by TE class; overlap> 50%") %>%
# kable_paper("striped", full_width = TRUE) %>%
# kable_styling(full_width = FALSE, font_size = 14)The first dataframe to subset peaks that overlap >50% of a TE, was using the full neargene dataframe, where a peak is listed more than once because it was assigned more than one neargene ( one-to-many relationships). I changed the code to use the ‘collapsed’ data frame. This means the data frame was simplified to only include peaks one time, but those peaks that were assigned to more than one neargene had the assigned neargenes condensed and separated by a comma into the same column to create a one-to-one relationship dataframe. (yes, wordy I know)
######################################################
all_TEs_gr$TE_width <- width(all_TEs_gr)
Col_TSS_data_gr$peak_width <- width(Col_TSS_data_gr)
Col_fullDF_overlap <- join_overlap_intersect(Col_TSS_data_gr,all_TEs_gr)
Col_fullDF_overlap %>%
as.data.frame() %>%
group_by(repClass) %>%
tally %>%
kable(., caption=" Table 2: Count of peaks by TE class; overlap at least 1 bp; using one:one df ") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14)| repClass | n |
|---|---|
| DNA | 16960 |
| DNA? | 138 |
| LINE | 40440 |
| LTR | 27844 |
| LTR? | 257 |
| Low_complexity | 5731 |
| RC | 52 |
| RC? | 9 |
| RNA | 28 |
| Retroposon | 295 |
| SINE | 52755 |
| SINE? | 1 |
| Satellite | 191 |
| Simple_repeat | 30184 |
| Unknown | 288 |
| rRNA | 54 |
| scRNA | 32 |
| snRNA | 144 |
| srpRNA | 44 |
| tRNA | 302 |
Col_fullDF_overlap %>%
as.data.frame %>%
mutate(per_ol= width/TE_width) %>%
dplyr::filter(per_ol>0.5) %>%
group_by(repClass) %>%
tally() %>%
kable(., caption=" Table 3:Count of peaks by TE class; overlap of >50% of TE; newway ") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14)| repClass | n |
|---|---|
| DNA | 11821 |
| DNA? | 118 |
| LINE | 25548 |
| LTR | 18403 |
| LTR? | 199 |
| Low_complexity | 5305 |
| RC | 41 |
| RC? | 7 |
| RNA | 22 |
| Retroposon | 81 |
| SINE | 31936 |
| SINE? | 1 |
| Satellite | 81 |
| Simple_repeat | 28143 |
| Unknown | 242 |
| rRNA | 44 |
| scRNA | 24 |
| snRNA | 124 |
| srpRNA | 31 |
| tRNA | 291 |
Filter_TE_list <- Col_fullDF_overlap %>%
as.data.frame %>%
mutate(per_ol= width/TE_width)
# dplyr::filter(per_ol>0.5)
Unique_peak_overlap <- Col_fullDF_overlap %>%
as.data.frame() %>%
distinct(Peakid)
peak_overlap_50unique <- Filter_TE_list %>%
dplyr::filter(per_ol>0.5) %>%
distinct(Peakid)Note that the counts of peaks total to more than the total number of peaks that overlap a TE because many peaks overlap multiple elements (generally the very small TEs).
A summary of numbers of peaks is below:
Tables 3 above used the better way of sub-setting (keeping all metadata organized vs the sub-setting code I found on the internet).
Below are plots of the distribution of overlapping widths between peaks and TEs. The first plot is all TE Class, and the 2nd plot limits the classes to LINEs, SINEs, LTRs, DNAs, and Retroposons.
Col_fullDF_overlap %>%
as.data.frame %>%
ggplot(., aes(x=width, fill=repClass))+
geom_density(color="darkblue",aes(alpha = 0.5))+
theme_classic()+
ggtitle("Distribution of all overlapping widths in my data",subtitle = " limited x axis")+
coord_cartesian(xlim= c(0,750))+
scale_fill_repeat()Col_fullDF_overlap %>%
as.data.frame %>%
dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass =="LTR"|repClass=="DNA"|repClass =="Retroposon") %>%
ggplot(., aes(x=width, fill=repClass))+
geom_density(color="darkblue",aes(alpha = 0.5))+
theme_classic()+
ggtitle("Distribution of all overlapping peak-TE widths",subtitle = "Just LINE, SINE,LTR, DNA, Retroposons; limited x axis")+
coord_cartesian(xlim= c(0,1550))+
scale_fill_repeat()Getting the numbers of peaks containing an overlap of > 50% of the TE required creation of a data frame. The first step of the dataframe was to use all high confidence Peaks and join with the TE_Overlapping dataframe.
Peak_TE_overlapbreakdown <- Col_TSS_data_gr %>%
as.data.frame %>%
distinct(Peakid) %>%
left_join(.,(Col_fullDF_overlap %>% as.data.frame)) %>%
dplyr::select(Peakid, repName:repFamily,TE_width,width) %>%
left_join(.,(TSS_data_gr %>% as.data.frame), by=c("Peakid"="Peakid")) %>%
mutate(mrc=if_else(Peakid %in% NR_df$Peakid, "NR",
if_else(Peakid %in% ESR_df$Peakid,"ESR",
if_else(Peakid %in% LR_df$Peakid,"LR",
if_else(Peakid %in% EAR_df$Peakid, "EAR", "not_mrc"))))) %>% mutate(per_ol= width.x/TE_width)
Peak_TE_overlapbreakdown %>%
mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
distinct(Peakid,.keep_all = TRUE) %>%
group_by(mrc,TEstatus) %>% tally() # A tibble: 10 × 3
# Groups: mrc [5]
mrc TEstatus n
<chr> <chr> <int>
1 EAR TE_peak 4858
2 EAR not_TE_peak 2596
3 ESR TE_peak 10256
4 ESR not_TE_peak 5525
5 LR TE_peak 29288
6 LR not_TE_peak 13321
7 NR TE_peak 57561
8 NR not_TE_peak 28767
9 not_mrc TE_peak 2186
10 not_mrc not_TE_peak 1199# TE_mrc_status_list %>%
# distinct(Peakid, .keep_all = TRUE) %>%
# group_by(TEstatus, mrc) %>%
# tally #%>%
# dplyr::filter(n>=4&mrc=="EAR")
# Col_fullDF_cug_overlap %>% as.data.frame() %>% group_by(Peakid) %>% tally %>% dplyr::filter(n>=4)This increased the number of rows from 172481 to 232225 indicating
many peaks contained more than one TE. The column per_ol is
representing the proportion of TE covered within the peak. I next
decided to only count a peak to contain a TE, if it covered >50% of
the length of the TE.
per_cov=0.5
TE_mrc_status_list <- Peak_TE_overlapbreakdown %>%
mutate(repClass=if_else(per_ol>per_cov, repClass, if_else(per_ol<per_cov,NA,repClass))) %>%
mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
dplyr::select(Peakid,repName,repClass,repFamily,TEstatus, mrc, per_ol)
TE_mrc_status_list%>%
distinct(Peakid,TEstatus,.keep_all = TRUE) %>%
mutate(mrc="all_peaks")%>%
rbind((TE_mrc_status_list %>% distinct(Peakid,TEstatus,.keep_all = TRUE))) %>%
mutate(repClass=factor(repClass)) %>%
mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>%
dplyr::filter(mrc != "not_mrc") %>%
mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks"))) %>%
ggplot(., aes(x=mrc, fill= TEstatus))+
geom_bar(position="fill", col="black")+
theme_classic()+
ggtitle(paste("TE status by MRC and Family using the ",per_cov*100,"% cutoff"))The table below represents the numbers for each of the four groups when I include the >50% stringency cutoff filter.
per_cov=0.5
TE_mrc_status_list %>%
distinct(Peakid,.keep_all = TRUE) %>%
mutate(mrc="all_peaks")%>%
rbind((TE_mrc_status_list %>% distinct(Peakid,.keep_all = TRUE))) %>%
mutate(repClass=factor(repClass)) %>%
mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>%
dplyr::filter(mrc != "not_mrc") %>%
mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks"))) %>%
group_by(mrc, TEstatus) %>%
count() %>%
pivot_wider(., id_cols = mrc, names_from = TEstatus, values_from = n) %>%
rowwise() %>%
mutate(summary= sum(c_across(TE_peak:not_TE_peak))) %>%
ungroup() %>%
pivot_longer(., cols= c(TE_peak, not_TE_peak), names_to = c("TEstatus"), values_to = "n") %>%
mutate(percent_mrc= n/summary*100) %>%
kable(., caption="Table 4: Summary of peak numbers overlapping and not overlapping TEs by each basic MRC using strigency cutoff of 50%.") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14)| mrc | summary | TEstatus | n | percent_mrc |
|---|---|---|---|---|
| EAR | 7454 | TE_peak | 3126 | 41.93721 |
| EAR | 7454 | not_TE_peak | 4328 | 58.06279 |
| ESR | 15781 | TE_peak | 6594 | 41.78442 |
| ESR | 15781 | not_TE_peak | 9187 | 58.21558 |
| LR | 42609 | TE_peak | 18855 | 44.25121 |
| LR | 42609 | not_TE_peak | 23754 | 55.74879 |
| NR | 86328 | TE_peak | 37456 | 43.38801 |
| NR | 86328 | not_TE_peak | 48872 | 56.61199 |
| all_peaks | 155557 | TE_peak | 67439 | 43.35324 |
| all_peaks | 155557 | not_TE_peak | 88118 | 56.64676 |
Problem with summary of TE ## Human genome TE breakdown
I first wanted to know the distribution of TEs across the human genome compared to each other. Below are pie plots with all classes from repeatmasker, and then pie plots with ONLY the LINES, SINES, LTRs, DNAs, and Retroposon classes.
repeatmasker %>%
mutate(repClass=factor(repClass)) %>%
count(repClass) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repClass = fct_rev(fct_inorder(repClass))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repClass)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repClass,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle("Human genome TE breakdown", subtitle=paste(length(repeatmasker$milliIns)))+
scale_fill_repeat()LiSiLTDNRe <- repeatmasker %>%
dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon")
repeatmasker %>%
mutate(repClass=factor(repClass)) %>%
dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon") %>%
count(repClass) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repClass = fct_rev(fct_inorder(repClass))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repClass)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repClass,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle("Human genome TE breakdown LINE/SINE/LTR/DNA/Retroposon only", subtitle=paste(length(LiSiLTDNRe$milliIns)))+
scale_fill_repeat()repeatmasker %>%
mutate(repClass_org=repClass) %>%
mutate(repClass=factor(repClass)) %>%
mutate(repClass=if_else(##relable repClass with other
repClass_org=="LINE", repClass_org,
if_else(repClass_org=="SINE",repClass_org,
if_else(repClass_org=="LTR", repClass_org,
if_else(repClass_org=="DNA", repClass_org, if_else(repClass_org=="Retroposon",repClass_org,"Other")))))) %>%
# dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon") %>%
count(repClass) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repClass = fct_rev(fct_inorder(repClass))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repClass)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repClass,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle("Human genome TE breakdown LINE/SINE/LTR/DNA/Retroposon focused with other", subtitle=paste(length(repeatmasker$milliIns)))+
scale_fill_repeat()# saveRDS(TE_mrc_status_list,"data/TE_info/TE_mrc_status_list.RDS")
# TE_ALL_count <- TE_mrc_status_list %>%
# dplyr::filter(TEstatus =="TE_peak") %>%
# dplyr::filter(mrc!="not_mrc") %>%
# distinct(Peakid) %>%
# count
# TE_ALL_count_filt <- TE_mrc_status_list %>%
# dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon") %>%
# dplyr::filter(TEstatus =="TE_peak") %>%
# dplyr::filter(mrc!="not_mrc") %>%
# distinct(Peakid) %>%
# count
TE_50_count <- TE_mrc_status_list %>%
dplyr::filter(TEstatus =="TE_peak") %>%
dplyr::filter(mrc!="not_mrc") %>%
distinct(Peakid) %>%
count
TE_50_count_filt <- TE_mrc_status_list %>%
dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon") %>%
# dplyr::filter(per_ol>per_cov) %>%
dplyr::filter(TEstatus =="TE_peak") %>%
dplyr::filter(mrc!="not_mrc") %>%
distinct(Peakid) %>%
count
TE_mrc_status_list %>%
mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
mutate(repClass=factor(repClass)) %>%
dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon") %>%
# group_by(repClass) %>%
dplyr::filter(TEstatus =="TE_peak") %>%
count(repClass) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repClass = fct_rev(fct_inorder(repClass))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repClass)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repClass,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35)+
# geom_label_repel(aes(label = paste(n,"\n", repClass)),
# position = position_stack(vjust = .3),
# show.legend = FALSE,max.overlaps = 50) +
theme_void()+
ggtitle("TE breakdown of Just LINEs, SINEs, LTRs, DNAs, and Retroposons",subtitle = paste(TE_50_count_filt$n))+
scale_fill_repeat()TE_mrc_status_list %>%
mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
mutate(repClass=factor(repClass)) %>%
distinct() %>%
dplyr::filter(TEstatus =="TE_peak") %>%
count(repClass) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repClass = fct_rev(fct_inorder(repClass))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repClass)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repClass,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
# geom_label_repel(aes(label = paste(n,"\n", repClass)),
# position = position_stack(vjust = .3),
# show.legend = FALSE,max.overlaps = 50) +
theme_void()+
ggtitle("TE breakdown of all peaks using 50% cutoff",subtitle = paste(TE_50_count$n))+
scale_fill_repeat()TE_mrc_status_list %>%
mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
mutate(repClass_org=repClass) %>%
mutate(repClass=factor(repClass)) %>%
mutate(repClass=if_else(##relable repClass with other
repClass_org=="LINE", repClass_org,
if_else(repClass_org=="SINE",repClass_org,
if_else(repClass_org=="LTR", repClass_org,
if_else(repClass_org=="DNA", repClass_org,
if_else(repClass_org=="Retroposon",repClass_org,"Other")))))) %>%
distinct() %>%
dplyr::filter(TEstatus =="TE_peak") %>%
count(repClass) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repClass = fct_rev(fct_inorder(repClass))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repClass)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repClass,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
# geom_label_repel(aes(label = paste(n,"\n", repClass)),
# position = position_stack(vjust = .3),
# show.legend = FALSE,max.overlaps = 50) +
theme_void()+
ggtitle("TE breakdown of all peaks using 50% cutoff",subtitle = paste(TE_50_count_filt$n, "peaks that contain LINEs, SINEs, LTRs, DNAs, or Retroposons"))+
scale_fill_repeat()### note the change in data frame Renee, this is where you flipped back to the original without filters.
Peak_TE_overlapbreakdown%>%
mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
dplyr::filter(TEstatus=="TE_peak") %>%
distinct() %>%
mutate(repClass=factor(repClass)) %>%
ggplot(., aes(x=width.x))+
geom_density(aes(fill=repClass, alpha = 0.5))+
theme_classic()+
ggtitle("Distribution of all overlapping peak-TE widths")+
scale_fill_repeat()Peak_TE_overlapbreakdown%>%
mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
dplyr::filter(TEstatus=="TE_peak") %>%
distinct() %>%
mutate(repClass=factor(repClass)) %>%
dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon") %>%
ggplot(., aes(x=width.x))+
geom_density(aes(fill=repClass, alpha = 0.5))+
theme_classic()+
ggtitle("Distribution of all overlapping peak-TE widths >50%")+
scale_fill_repeat()Peak_TE_overlapbreakdown%>%
mutate(repClass=if_else(per_ol>per_cov, repClass, if_else(per_ol<per_cov,NA,repClass))) %>%
mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
dplyr::filter(TEstatus=="TE_peak") %>%
distinct() %>%
mutate(repClass=factor(repClass)) %>%
ggplot(., aes(x=width.x))+
geom_density(aes(fill=repClass, alpha = 0.5))+
theme_classic()+
ggtitle("Distribution of all overlapping peak-TE widths >50% of TE length")+
scale_fill_repeat()Peak_TE_overlapbreakdown %>%
mutate(repClass=if_else(per_ol>per_cov, repClass, if_else(per_ol<per_cov,NA,repClass))) %>%
mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
distinct() %>%
dplyr::filter(TEstatus=="TE_peak") %>%
mutate(repClass=factor(repClass)) %>%
dplyr::filter(repClass=="LINE"|repClass=="SINE"|repClass=="LTR"|repClass=="DNA"|repClass=="Retroposon") %>%
ggplot(., aes(x=width.x))+
geom_density(aes(fill=repClass, alpha = 0.5))+
scale_fill_repeat()+
theme_classic()+
ggtitle("Filtered Distribution of all overlapping peak-TE widths >50 TE length%")Line_df %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle("Human genome LINE breakdown", subtitle=paste(length(Line_df$milliIns)))+
scale_fill_lines()TE_LINE_count <- TE_mrc_status_list %>%
dplyr::filter(TEstatus =="TE_peak"&repClass=="LINE") %>%
count
TE_mrc_status_list %>%
dplyr::filter(repClass == "LINE") %>%
mutate(repFamily=factor(repFamily)) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste0("LINE breakdown of peaks ",per_cov),subtitle=paste(TE_LINE_count$n))+
scale_fill_lines()EAR_LINE_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="EAR"&repClass=="LINE") %>%
count
ESR_LINE_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="ESR"&repClass=="LINE") %>%
count
LR_LINE_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="LR"&repClass=="LINE") %>%
count
NR_LINE_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="NR"&repClass=="LINE") %>%
count
TE_mrc_status_list %>%
dplyr::filter(mrc =="EAR"&repClass=="LINE") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste0("EAR LINE breakdown of peaks ",per_cov),subtitle=paste(EAR_LINE_count$n))+
scale_fill_lines()TE_mrc_status_list %>%
dplyr::filter(mrc =="ESR"&repClass=="LINE") %>%
mutate(repFamily=factor(repFamily)) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste0("ESR LINE breakdown of peaks ",per_cov),subtitle=paste(ESR_LINE_count$n))+
scale_fill_lines()TE_mrc_status_list %>%
dplyr::filter(mrc =="LR"&repClass=="LINE") %>%
mutate(repFamily=factor(repFamily)) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste0("LR LINE breakdown of peaks ",per_cov),subtitle=paste(LR_LINE_count$n))+
scale_fill_lines()TE_mrc_status_list %>%
dplyr::filter(mrc =="NR"&repClass=="LINE") %>%
mutate(repFamily=factor(repFamily)) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste0("NR LINE breakdown of peaks ",per_cov),subtitle=paste(NR_LINE_count$n))+
scale_fill_lines()all_L2_count <- TE_mrc_status_list %>%
dplyr::filter(repClass=="LINE"&repFamily=="L2") %>%
tally
EAR_L2_count <- TE_mrc_status_list %>%
dplyr::filter(repClass=="LINE"&repFamily=="L2", mrc=="EAR") %>%
tally
ESR_L2_count <- TE_mrc_status_list %>%
dplyr::filter(repClass=="LINE"&repFamily=="L2", mrc=="ESR") %>%
tally
LR_L2_count <- TE_mrc_status_list %>%
dplyr::filter(repClass=="LINE"&repFamily=="L2", mrc=="LR") %>%
tally
NR_L2_count <- TE_mrc_status_list %>%
dplyr::filter(repClass=="LINE"&repFamily=="L2", mrc=="NR") %>%
tally
TE_mrc_status_list %>%
dplyr::filter(repClass=="LINE"&repFamily=="L2")%>%
mutate(repName=factor(repName)) %>%
# group_by(repName) %>%
count(repName) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repName = fct_rev(fct_inorder(repName))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repName)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
# geom_label_repel(aes(label = n),
# position = position_stack(vjust = .3),
# show.legend = FALSE,max.overlaps = 50) +
theme_void()+
ggtitle(paste0("LINE-L2 breakdown for all peaks ",per_cov),subtitle=paste(all_L2_count," total LINEs"))+
scale_fill_L2()TE_mrc_status_list %>%
dplyr::filter(mrc =="EAR"&repClass=="LINE"&repFamily=="L2")%>%
mutate(repName=factor(repName)) %>%
# group_by(repName) %>%
count(repName) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repName = fct_rev(fct_inorder(repName))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repName)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
# geom_label_repel(aes(label = n),
# position = position_stack(vjust = .3),
# show.legend = FALSE,max.overlaps = 50) +
geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste0("LINE-L2 breakdown for EAR ",per_cov),subtitle=paste(EAR_L2_count$n," total L2s"))+
scale_fill_L2()TE_mrc_status_list %>%
dplyr::filter(mrc =="ESR"&repClass=="LINE"&repFamily=="L2")%>%
mutate(repName=factor(repName)) %>%
# group_by(repName) %>%
count(repName) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repName = fct_rev(fct_inorder(repName))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repName)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste0("LINE-L2 breakdown for ESR ",per_cov),subtitle=paste(ESR_L2_count$n," total L2s"))+
scale_fill_L2()TE_mrc_status_list %>%
dplyr::filter(mrc =="LR"&repClass=="LINE"&repFamily=="L2")%>%
mutate(repName=factor(repName)) %>%
count(repName) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repName = fct_rev(fct_inorder(repName))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repName)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste0("LINE-L2 breakdown for LR ",per_cov),subtitle=paste(LR_L2_count$n," total L2s"))+
scale_fill_L2()TE_mrc_status_list %>%
dplyr::filter(mrc =="NR"&repClass=="LINE"&repFamily=="L2")%>%
mutate(repName=factor(repName)) %>%
count(repName) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repName = fct_rev(fct_inorder(repName))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repName)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste0("LINE-L2 breakdown for NR ",per_cov),subtitle=paste(NR_L2_count$n," total L2s"))+
scale_fill_L2()Sine_df%>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle("Human genome SINE breakdown", subtitle=paste(length(Sine_df$milliIns)))+
scale_fill_sines()TE_SINE_count <- TE_mrc_status_list %>%
dplyr::filter(TEstatus =="TE_peak"&repClass=="SINE") %>%
count
TE_mrc_status_list %>%
dplyr::filter(repClass == "SINE") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
# geom_label_repel(aes(label = n),
# position = position_stack(vjust = .3),
# show.legend = FALSE,max.overlaps = 50) +
theme_void()+
ggtitle(paste0("SINE breakdown of peaks ",per_cov),subtitle=paste(TE_SINE_count$n," total SINEs found"))+
scale_fill_sines()EAR_SINE_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="EAR"&repClass=="SINE") %>%
count
ESR_SINE_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="ESR"&repClass=="SINE") %>%
count
LR_SINE_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="LR"&repClass=="SINE") %>%
count
NR_SINE_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="NR"&repClass=="SINE") %>%
count
TE_mrc_status_list %>%
dplyr::filter(mrc =="EAR"&repClass=="SINE") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
# geom_label_repel(aes(label = n),
# position = position_stack(vjust = .3),
# show.legend = FALSE,max.overlaps = 50) +
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste0("EAR SINE breakdown of peaks ",per_cov),subtitle=paste(EAR_SINE_count$n))+
scale_fill_sines()TE_mrc_status_list %>%
dplyr::filter(mrc =="ESR"&repClass=="SINE") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
# geom_label_repel(aes(label = n),
# position = position_stack(vjust = .3),
#
theme_void()+
ggtitle(paste0("ESR SINE breakdown of peaks ",per_cov),subtitle=paste(ESR_SINE_count$n))+
scale_fill_sines()TE_mrc_status_list %>%
dplyr::filter(mrc =="LR"&repClass=="SINE") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
# geom_label_repel(aes(label = n),
# position = position_stack(vjust = .3),
# show.legend = FALSE,max.overlaps = 50) +
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste0("LR SINE breakdown of peaks ",per_cov),subtitle=paste(LR_SINE_count$n))+
scale_fill_sines()TE_mrc_status_list %>%
dplyr::filter(mrc =="NR"&repClass=="SINE") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
# geom_label_repel(aes(label = n),
# position = position_stack(vjust = .3),
# show.legend = FALSE,max.overlaps = 50) +
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste0("NR SINE breakdown of peaks ",per_cov),subtitle=paste(NR_SINE_count$n))+
scale_fill_sines()per_cov <- 0.5
LTR_df%>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle("Human genome LTR breakdown", subtitle=paste(length(LTR_df$milliIns)))+
scale_fill_LTRs()LTR_count <- TE_mrc_status_list %>%
dplyr::filter(repClass=="LTR") %>%
count
EAR_LTR_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="EAR"&repClass=="LTR") %>%
count
ESR_LTR_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="ESR"&repClass=="LTR") %>%
count
LR_LTR_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="LR"&repClass=="LTR") %>%
count
NR_LTR_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="NR"&repClass=="LTR") %>%
count
TE_mrc_status_list %>%
dplyr::filter(repClass=="LTR") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste("All peaks LTR breakdown of peaks",per_cov),subtitle=paste(LTR_count$n))+
scale_fill_LTRs()TE_mrc_status_list %>%
dplyr::filter(mrc =="EAR"&repClass=="LTR") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste("EAR LTR breakdown of peaks",per_cov),subtitle=paste(EAR_LTR_count$n))+
scale_fill_LTRs()TE_mrc_status_list %>%
dplyr::filter(mrc =="ESR"&repClass=="LTR") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste("ESR LTR breakdown of peaks",per_cov),subtitle=paste(ESR_LTR_count$n))+
scale_fill_LTRs()TE_mrc_status_list %>%
dplyr::filter(mrc =="LR"&repClass=="LTR") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste("LR LTR breakdown of peaks ",per_cov),subtitle=paste(LR_LTR_count$n))+
scale_fill_LTRs()TE_mrc_status_list %>%
dplyr::filter(mrc =="NR"&repClass=="LTR") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste("NR LTR breakdown of peaks", per_cov),subtitle=paste(NR_LTR_count$n))+
scale_fill_LTRs()per_cov <- 0.5
DNA_df%>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 50) +
theme_void()+
ggtitle("Human genome DNA breakdown", subtitle=paste(length(DNA_df$milliIns)))+
scale_fill_DNAs()TE_DNA_count <- TE_mrc_status_list %>%
dplyr::filter(TEstatus =="TE_peak"&repClass=="DNA") %>%
count
TE_mrc_status_list %>%
dplyr::filter(repClass == "DNA") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
# geom_label(aes(label = repClass),
# position = position_stack(vjust = .8)) +
# geom_label(aes(label=repClass, y=text_y))
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste("DNA breakdown of peaks", per_cov),subtitle=paste(TE_DNA_count$n))+
scale_fill_DNAs()EAR_DNA_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="EAR"&repClass=="DNA") %>%
count
ESR_DNA_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="ESR"&repClass=="DNA") %>%
count
LR_DNA_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="LR"&repClass=="DNA") %>%
count
NR_DNA_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="NR"&repClass=="DNA") %>%
count
TE_mrc_status_list %>%
dplyr::filter(mrc =="EAR"&repClass=="DNA") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
# geom_label_repel(aes(label = n),
# position = position_stack(vjust = .3),
# show.legend = FALSE,max.overlaps = 50) +
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste("EAR DNA breakdown of peaks",per_cov),subtitle=paste(EAR_DNA_count$n))+
scale_fill_DNAs()TE_mrc_status_list %>%
dplyr::filter(mrc =="ESR"&repClass=="DNA") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste("ESR DNA breakdown of peaks",per_cov),subtitle=paste(ESR_DNA_count$n))+
scale_fill_DNAs()TE_mrc_status_list %>%
dplyr::filter(mrc =="LR"&repClass=="DNA") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste("LR DNA breakdown of peaks",per_cov),subtitle=paste(LR_DNA_count$n))+
scale_fill_DNAs()TE_mrc_status_list %>%
dplyr::filter(mrc =="NR"&repClass=="DNA") %>%
mutate(repFamily=factor(repFamily)) %>%
# group_by(repFamily) %>%
count(repFamily) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repFamily = fct_rev(fct_inorder(repFamily))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repFamily)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repFamily,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste("NR DNA breakdown of peaks", per_cov),subtitle=paste(NR_DNA_count$n))+
scale_fill_DNAs()per_cov <- 0.5
retroposon_df%>%
count(repName) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repName = fct_rev(fct_inorder(repName))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repName)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repName ,"\n", sprintf("%.2f", perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle("Human genome retroposon breakdown", subtitle= paste( length(retroposon_df$milliIns)))+
scale_fill_retroposons()TE_retroposon_count <- TE_mrc_status_list %>%
dplyr::filter(TEstatus =="TE_peak"&repClass=="Retroposon") %>%
count
TE_mrc_status_list %>%
dplyr::filter(repClass == "Retroposon") %>%
mutate(repName=factor(repName)) %>%
# group_by(repName) %>%
count(repName) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repName = fct_rev(fct_inorder(repName))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repName)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
# geom_label(aes(label = repClass),
# position = position_stack(vjust = .8)) +
geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste("retroposon breakdown of peaks",per_cov),subtitle=paste(TE_retroposon_count$n))+
scale_fill_retroposons()EAR_Retroposon_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="EAR"&repClass=="Retroposon") %>%
count
ESR_Retroposon_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="ESR"&repClass=="Retroposon") %>%
count
LR_Retroposon_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="LR"&repClass=="Retroposon") %>%
count
NR_Retroposon_count <- TE_mrc_status_list %>%
dplyr::filter(mrc =="NR"&repClass=="Retroposon") %>%
count
TE_mrc_status_list %>%
dplyr::filter(mrc =="ESR"&repClass=="Retroposon") %>%
mutate(repName=factor(repName)) %>%
# group_by(repName) %>%
count(repName) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repName = fct_rev(fct_inorder(repName))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repName)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste("ESR Retroposon breakdown of peaks",per_cov),subtitle=paste(ESR_Retroposon_count$n))+
scale_fill_retroposons()TE_mrc_status_list %>%
dplyr::filter(mrc =="LR"&repClass=="Retroposon") %>%
mutate(repName=factor(repName)) %>%
# group_by(repName) %>%
count(repName) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repName = fct_rev(fct_inorder(repName))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repName)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste("LR Retroposon breakdown of peaks",per_cov),subtitle=paste(LR_Retroposon_count$n))+
scale_fill_retroposons()TE_mrc_status_list %>%
dplyr::filter(mrc =="NR"&repClass=="Retroposon") %>%
mutate(repName=factor(repName)) %>%
# group_by(repName) %>%
count(repName) %>%
mutate(perc= n/sum(n)) %>%
arrange(desc(n)) %>%
mutate(repName = fct_rev(fct_inorder(repName))) %>%
mutate(text_y = cumsum(n) - n/2) %>%
ggplot(., aes(x = "", y = n, fill = repName)) +
geom_col(color = "black") +
coord_polar(theta = "y", start = 0)+
geom_label_repel(aes(label = paste0(repName,"\n",sprintf("%.2f",perc*100),"%")),
position = position_stack(vjust = .5),
force=.9,show.legend = FALSE,max.overlaps = 35) +
theme_void()+
ggtitle(paste("NR Retroposon breakdown of peaks",per_cov),subtitle=paste(NR_Retroposon_count$n))+
scale_fill_retroposons()TE_mrc_status_list %>%
mutate(repClass_org = repClass) %>% #copy repClass for storage
mutate(repClass=if_else(##relable repClass with other
repClass_org=="LINE", repClass_org,
if_else(repClass_org=="SINE",repClass_org,
if_else(repClass_org=="LTR", repClass_org,
if_else(repClass_org=="DNA", repClass_org,
if_else(repClass_org=="Retroposon",repClass_org,"Other")))))) %>%
dplyr::select(Peakid,repName,repClass,repFamily,TEstatus, mrc, per_ol) %>%
distinct(Peakid, .keep_all = TRUE) %>%
mutate(mrc="all_peaks") %>%
rbind((TE_mrc_status_list %>% distinct(Peakid,.keep_all = TRUE))) %>%
mutate(repClass=factor(repClass)) %>%
mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>%
dplyr::filter(mrc != "not_mrc") %>%
# dplyr::filter(is.na(per_ol)| per_ol>per_cov) %>%
mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks"))) %>%
ggplot(., aes(x=mrc, fill= TEstatus))+
geom_bar(position="fill", col="black")+
theme_classic()+
ggtitle(paste("TE status by MRC and Family",">", per_cov*100,"%"))# TE_counts_nofilt <- TE_mrc_status_list %>%
# mutate(repClass_org = repClass) %>% #copy repClass for storage
# mutate(repClass=if_else(##relable repClass with other
# repClass_org=="LINE", repClass_org,if_else(repClass_org=="SINE",repClass_org,if_else(repClass_org=="LTR", repClass_org, if_else(repClass_org=="DNA", repClass_org, if_else(repClass_org=="Retroposon",repClass_org,if_else(is.na(repClass_org),repClass_org,"Other"))))))) %>%
# dplyr::select(Peakid,repName,repClass,repFamily,TEstatus, mrc, per_ol) %>% distinct(Peakid, .keep_all = TRUE) %>%
# mutate(mrc="all_peaks") %>%
# rbind((TE_mrc_status_list %>% distinct(Peakid,.keep_all = TRUE))) %>%
# # mutate(repClass=factor(repClass)) %>%
# mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>%
# dplyr::filter(mrc != "not_mrc") %>%
# mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks"))) %>%
# group_by(mrc, TEstatus) %>%
# count() %>%
# pivot_wider(., id_cols = mrc, names_from = TEstatus, values_from = n) %>%
# rowwise() %>%
# mutate(summary= sum(c_across(TE_peak:not_TE_peak))) %>%
# ungroup() %>%
# pivot_longer(., cols= c(TE_peak, not_TE_peak), names_to = c("TEstatus"), values_to = "n") %>%
# mutate(percent_mrc= n/summary*100)
# notinterested_list <- c("Simple_repeat","Satellite","Low_complexity","DNA?","snRNA","tRNA","Unknown","RC","LTR?","srpRNA","scRNA","rRNA","RC?","SINE?")
Lines_Etc <- TE_mrc_status_list %>%
mutate(repClass_org = repClass) %>%
# dplyr::filter(!repClass %in% notinterested_list) %>%
mutate(repClass=if_else(##relable repClass with other
repClass_org=="LINE", repClass_org,
if_else(repClass_org=="SINE",repClass_org,
if_else(repClass_org=="LTR", repClass_org,
if_else(repClass_org=="DNA", repClass_org,
if_else(repClass_org=="Retroposon",repClass_org,
if_else(is.na(repClass_org),repClass_org,"Other"))))))) %>%
dplyr::select(Peakid,repName,repClass,repFamily,TEstatus, mrc, per_ol)%>%
distinct(Peakid,mrc, .keep_all = TRUE) %>%
mutate(mrc="all_peaks")LiSiLTDNRe_TE <-TE_mrc_status_list %>%
mutate(repClass_org = repClass) %>%
mutate(repClass=if_else(##relable repClass with other
repClass_org=="LINE", repClass_org,
if_else(repClass_org=="SINE",repClass_org,
if_else(repClass_org=="LTR", repClass_org,
if_else(repClass_org=="DNA", repClass_org,
if_else(repClass_org=="Retroposon",repClass_org,
if_else(is.na(repClass_org),repClass_org,"Other"))))))) %>%
dplyr::select(Peakid,repName,repClass,repFamily,TEstatus, mrc, per_ol) %>%
distinct(Peakid, .keep_all = TRUE) %>%
rbind(Lines_Etc) %>%
mutate(repClass=factor(repClass)) %>%
mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>%
dplyr::filter(mrc != "not_mrc") %>%
mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks"))) %>%
group_by(mrc, TEstatus) %>%
count() %>%
pivot_wider(., id_cols = mrc, names_from = TEstatus, values_from = n) %>%
rowwise() %>%
mutate(summary= sum(c_across(TE_peak:not_TE_peak))) %>%
ungroup() %>%
pivot_longer(., cols= c(TE_peak, not_TE_peak), names_to = c("TEstatus"), values_to = "n") %>%
mutate(percent_mrc= n/summary*100)
LiSiLTDNRe_TE %>%
kable(., caption="Table 5: Summary of peak numbers overlapping and not overlapping TEs by each basic MRC in TE_peak count") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14) %>%
scroll_box(height = "500px")| mrc | summary | TEstatus | n | percent_mrc |
|---|---|---|---|---|
| EAR | 7454 | TE_peak | 3126 | 41.93721 |
| EAR | 7454 | not_TE_peak | 4328 | 58.06279 |
| ESR | 15781 | TE_peak | 6594 | 41.78442 |
| ESR | 15781 | not_TE_peak | 9187 | 58.21558 |
| LR | 42609 | TE_peak | 18855 | 44.25121 |
| LR | 42609 | not_TE_peak | 23754 | 55.74879 |
| NR | 86328 | TE_peak | 37456 | 43.38801 |
| NR | 86328 | not_TE_peak | 48872 | 56.61199 |
| all_peaks | 155557 | TE_peak | 67439 | 43.35324 |
| all_peaks | 155557 | not_TE_peak | 88118 | 56.64676 |
# TE_mrc_status_list %>%
# mutate(repClass_org = repClass) %>%
# mutate(repClass=if_else(##relable repClass with other
# repClass_org=="LINE", repClass_org,
# if_else(repClass_org=="SINE",repClass_org,
# if_else(repClass_org=="LTR", repClass_org,
# if_else(repClass_org=="DNA", repClass_org, if_else(repClass_org=="Retroposon",repClass_org,"Other")))))) %>%
# dplyr::select(Peakid,repName,repClass,repFamily,TEstatus, mrc, per_ol) %>%
# distinct(Peakid, .keep_all = TRUE) %>%
# rbind(Lines_Etc) %>%
# dplyr::filter(is.na(per_ol)| per_ol > per_cov) %>%
# mutate(repClass=factor(repClass)) %>%
# mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>%
# dplyr::filter(mrc != "not_mrc") %>%
# mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks"))) %>%
# ggplot(., aes(x=mrc, fill= TEstatus))+
# geom_bar(position="fill", col="black")+
# theme_classic()+
# ggtitle(paste("TE status by MRC and Family", per_cov), subtitle = "Just LINEs, SINEs,LTRs, DNAs, Retroposons, and all peaks in the MRC families")# ##complete counts()
# print("Chi square tests without filtering")
# chitest_LRvNRTE_nf <- matrix(c(TE_counts_nofilt$n[5],TE_counts_nofilt$n[6],TE_counts_nofilt$n[7],TE_counts_nofilt$n[8]), ncol=2, byrow=TRUE)
# chisq.test(chitest_LRvNRTE_nf)
#
# chitest_EARvNRTE_nf <- matrix(c(TE_counts_nofilt$n[1],TE_counts_nofilt$n[2],TE_counts_nofilt$n[7],TE_counts_nofilt$n[8]), ncol=2, byrow=TRUE)
# chisq.test(chitest_EARvNRTE_nf)
#
# chitest_ESRvNRTE_nf <- matrix(c(TE_counts_nofilt$n[3],TE_counts_nofilt$n[4],TE_counts_nofilt$n[7],TE_counts_nofilt$n[8]), ncol=2, byrow=TRUE)
# chisq.test(chitest_ESRvNRTE_nf)
### just subsets
# print("chi test on subsets without >50% overlap cut off")
# chitest_LRvNRTE_nc <- matrix(c(LiSiLTDNRe_TE_no_cut$n[5],LiSiLTDNRe_TE_no_cut$n[6],LiSiLTDNRe_TE_no_cut$n[7],LiSiLTDNRe_TE_no_cut$n[8]), ncol=2, byrow=TRUE)
# chisq.test(chitest_LRvNRTE_nc)
#
# chitest_EARvNRTE_nc <- matrix(c(LiSiLTDNRe_TE_no_cut$n[1],LiSiLTDNRe_TE_no_cut$n[2],LiSiLTDNRe_TE_no_cut$n[7],LiSiLTDNRe_TE_no_cut$n[8]), ncol=2, byrow=TRUE)
# chisq.test(chitest_EARvNRTE_nc)
#
# chitest_ESRvNRTE_nc <- matrix(c(LiSiLTDNRe_TE_no_cut$n[3],LiSiLTDNRe_TE_no_cut$n[4],LiSiLTDNRe_TE_no_cut$n[7],LiSiLTDNRe_TE_no_cut$n[8]), ncol=2, byrow=TRUE)
# chisq.test(chitest_ESRvNRTE_nc)
##### JUst using the .5 overlap cutoff
print(" chi tests using >50% cutoff")[1] " chi tests using >50% cutoff"chitest_LRvNRTE <- matrix(c(LiSiLTDNRe_TE$n[5],LiSiLTDNRe_TE$n[6],LiSiLTDNRe_TE$n[7],LiSiLTDNRe_TE$n[8]), ncol=2, byrow=TRUE)
chisq.test(chitest_LRvNRTE)
Pearson's Chi-squared test with Yates' continuity correction
data: chitest_LRvNRTE
X-squared = 8.6061, df = 1, p-value = 0.00335chitest_EARvNRTE <- matrix(c(LiSiLTDNRe_TE$n[1],LiSiLTDNRe_TE$n[2],LiSiLTDNRe_TE$n[7],LiSiLTDNRe_TE$n[8]), ncol=2, byrow=TRUE)
chisq.test(chitest_EARvNRTE)
Pearson's Chi-squared test with Yates' continuity correction
data: chitest_EARvNRTE
X-squared = 5.8244, df = 1, p-value = 0.01581chitest_ESRvNRTE <- matrix(c(LiSiLTDNRe_TE$n[3],LiSiLTDNRe_TE$n[4],LiSiLTDNRe_TE$n[7],LiSiLTDNRe_TE$n[8]), ncol=2, byrow=TRUE)
chisq.test(chitest_ESRvNRTE)
Pearson's Chi-squared test with Yates' continuity correction
data: chitest_ESRvNRTE
X-squared = 13.922, df = 1, p-value = 0.0001906per_cov <- 0.5
# ggline_df <- Line_repeats %>%
# as.data.frame() %>%
# tidyr::unite(Peakid,seqnames:end, sep= ".") %>%
# dplyr::select(Peakid,repName,repClass, repFamily) %>%
# mutate(TEstatus ="TE_peak", mrc="h.genome", per_ol = "NA") %>%
ggline_df <- TE_mrc_status_list %>%
mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
dplyr::filter(repClass=="LINE") %>%
distinct(Peakid, TEstatus,repClass,.keep_all = TRUE) %>%
mutate(mrc="all_peaks")
ggsine_df <-TE_mrc_status_list %>%
mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
dplyr::filter(repClass=="SINE") %>%
distinct(Peakid, TEstatus,repClass,.keep_all = TRUE) %>%
mutate(mrc="all_peaks")
# Sine_repeats %>%
# as.data.frame() %>%
# tidyr::unite(Peakid,seqnames:end, sep= ".") %>%
# dplyr::select(Peakid,repName,repClass, repFamily) %>%
# mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA") %>%
# rbind((TE_mrc_status_list %>%
# mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
# dplyr::filter(repClass=="SINE"))) %>%
# mutate(mrc="all_peaks")
ggLTR_df <- TE_mrc_status_list %>%
mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
dplyr::filter(repClass=="LTR") %>%
distinct(Peakid, TEstatus,repClass,.keep_all = TRUE) %>%
mutate(mrc="all_peaks")
# LTR_repeats %>%
# as.data.frame() %>%
# tidyr::unite(Peakid,seqnames:end, sep= ".") %>%
# dplyr::select(Peakid,repName,repClass, repFamily) %>%
# mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA")%>%
# rbind((TE_mrc_status_list %>%
# mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
# dplyr::filter(repClass=="LTR"))) %>%
# mutate(mrc="all_peaks")
ggDNA_df <-TE_mrc_status_list %>%
mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
dplyr::filter(repClass=="DNA") %>%
distinct(Peakid, TEstatus,repClass,.keep_all = TRUE) %>%
mutate(mrc="all_peaks")
# DNA_repeats %>%
# as.data.frame() %>%
# tidyr::unite(Peakid,seqnames:end, sep= ".") %>%
# dplyr::select(Peakid,repName,repClass, repFamily) %>%
# mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA")%>%
# rbind((TE_mrc_status_list %>%
# mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
# dplyr::filter(repClass=="DNA"))) %>%
# mutate(mrc="all_peaks")
ggretroposon_df <-TE_mrc_status_list %>%
mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
dplyr::filter(repClass=="Retroposons") %>%
distinct(Peakid, TEstatus,repClass,.keep_all = TRUE) %>%
mutate(mrc="all_peaks")
# retroposon_repeats %>%
# as.data.frame() %>%
# tidyr::unite(Peakid,seqnames:end, sep= ".") %>%
# dplyr::select(Peakid,repName,repClass, repFamily) %>%
# mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA")%>%
# rbind((TE_mrc_status_list %>%
# mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
# dplyr::filter(repClass=="Retroposon"))) %>%
# mutate(mrc="all_peaks")
plot1 <- TE_mrc_status_list %>%
dplyr::filter(repClass=="LINE") %>%
dplyr::filter(mrc != "not_mrc") %>%
rbind(., ggline_df) %>%
mutate(repFamily=factor(repFamily)) %>%
mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks","h.genome"))) %>%
ggplot(., aes(x=mrc, fill= repFamily))+
geom_bar(position="fill", col="black")+
theme_bw()+
ggtitle(paste("LINE breakdown by MRC and Family", per_cov))+
scale_fill_lines()
plot1plot2 <- TE_mrc_status_list %>%
dplyr::filter(repClass=="SINE") %>%
dplyr::filter(mrc != "not_mrc") %>%
rbind(., ggsine_df) %>%
mutate(repFamily=factor(repFamily)) %>%
mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks","h.genome"))) %>%
ggplot(., aes(x=mrc, fill= repFamily))+
geom_bar(position="fill", col="black")+
theme_bw()+
ggtitle(paste("SINE breakdown by MRC and Family",per_cov))+
scale_fill_sines()
plot2TE_mrc_status_list %>%
dplyr::filter(repClass=="LTR") %>%
dplyr::filter(mrc != "not_mrc") %>%
rbind(., ggLTR_df) %>%
mutate(repFamily=factor(repFamily)) %>%
mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks","h.genome"))) %>%
ggplot(., aes(x=mrc, fill= repFamily))+
geom_bar(position="fill", col="black")+
theme_bw()+
ggtitle(paste("LTR breakdown by MRC and Family",per_cov))+
scale_fill_LTRs()TE_mrc_status_list %>%
dplyr::filter(repClass=="DNA") %>%
dplyr::filter(mrc != "not_mrc") %>%
rbind(., ggDNA_df) %>%
mutate(repFamily=factor(repFamily)) %>%
mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks","h.genome"))) %>%
ggplot(., aes(x=mrc, fill= repFamily))+
geom_bar(position="fill", col="black")+
theme_classic()+
ggtitle(paste("DNA breakdown by MRC and Family",per_cov))+
scale_fill_DNAs()TE_mrc_status_list %>%
dplyr::filter(repClass=="Retroposon") %>%
dplyr::filter(mrc != "not_mrc") %>%
rbind(., ggretroposon_df) %>%
mutate(repName=factor(repName)) %>%
mutate(mrc=factor(mrc, levels = c("EAR","ESR", "LR", "NR","all_peaks","h.genome"))) %>%
ggplot(., aes(x=mrc, fill= repName))+
geom_bar(position="fill", col="black")+
theme_classic()+
ggtitle(paste("Retroposon breakdown by MRC and Family",per_cov))+
scale_fill_retroposons()Here I break up the categories using median LFC
per_cov=0.5
median_24_lfc <- read_csv("data/Final_four_data/median_24_lfc.csv")
median_3_lfc <- read_csv("data/Final_four_data/median_3_lfc.csv")
open_3med <- median_3_lfc %>%
dplyr::filter(med_3h_lfc > 0)
close_3med <- median_3_lfc %>%
dplyr::filter(med_3h_lfc < 0)
open_24med <- median_24_lfc %>%
dplyr::filter(med_24h_lfc > 0)
close_24med <- median_24_lfc %>%
dplyr::filter(med_24h_lfc < 0)
medA <- median_3_lfc %>%
left_join(median_24_lfc, by=c("peak"="peak")) %>%
dplyr::filter(med_3h_lfc > 0 & med_24h_lfc>0)
medB <- median_3_lfc %>%
left_join(median_24_lfc, by=c("peak"="peak")) %>%
dplyr::filter(med_3h_lfc < 0 & med_24h_lfc < 0)
medC <- median_3_lfc %>%
left_join(median_24_lfc, by=c("peak"="peak")) %>%
dplyr::filter(med_3h_lfc > 0& med_24h_lfc <0)
medD <- median_3_lfc %>%
left_join(median_24_lfc, by=c("peak"="peak"))%>%
dplyr::filter(med_3h_lfc < 0 & med_24h_lfc > 0)
EAR_open <- EAR_df %>%
dplyr::filter(Peakid %in% open_3med$peak)
EAR_open_gr <- EAR_open %>% GRanges()
EAR_close <- EAR_df %>%
dplyr::filter(Peakid %in% close_3med$peak)
EAR_close_gr <- EAR_close %>% GRanges()
LR_open <- LR_df %>%
dplyr::filter(Peakid %in% open_24med$peak)
LR_open_gr <- LR_open %>% GRanges()
LR_close <- LR_df %>%
dplyr::filter(Peakid %in% close_24med$peak)
LR_close_gr <- LR_close %>% GRanges()
NR_gr <- NR_df %>%
GRanges()
ESR_open <- ESR_df %>%
dplyr::filter(Peakid %in% medA$peak)
ESR_open_gr <- ESR_open %>% GRanges()
ESR_close <- ESR_df %>%
dplyr::filter(Peakid %in% medB$peak)
ESR_close_gr <- ESR_close %>% GRanges()
ESR_C <- ESR_df %>%
dplyr::filter(Peakid %in% medC$peak)
ESR_D <- ESR_df %>%
dplyr::filter(Peakid %in% medD$peak)
ESR_OC <- ESR_C %>%
rbind(ESR_D)
ESR_OC_gr <- ESR_OC %>% GRanges()
Eight_group_TE <- Col_TSS_data_gr %>%
as.data.frame %>%
dplyr::select(Peakid) %>%
left_join(.,(Col_fullDF_overlap %>%
as.data.frame)) %>%
# mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
mutate(mrc=if_else(Peakid %in% EAR_open$Peakid, "EAR_open",
if_else(Peakid %in% EAR_close$Peakid, "EAR_close",
if_else(Peakid %in% ESR_open$Peakid,"ESR_open",
if_else(Peakid %in% ESR_close$Peakid,"ESR_close",
if_else(Peakid %in% ESR_OC$Peakid,"ESR_OC",
if_else(Peakid %in% LR_open$Peakid, "LR_open",
if_else(Peakid %in% LR_close$Peakid, "LR_close",
if_else(Peakid %in% NR_df$Peakid, "NR", "not_mrc"))))))))) %>%
mutate(per_ol= width/TE_width) %>%
mutate(repClass_org=repClass) %>%
mutate(repClass=if_else(per_ol>per_cov, repClass, if_else(per_ol<per_cov,NA,repClass))) %>%
mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
mutate(repClass=factor(repClass)) %>%
mutate(repClass=if_else(##relable repClass with other
repClass_org=="LINE", repClass_org,
if_else(repClass_org=="SINE",repClass_org,
if_else(repClass_org=="LTR", repClass_org,
if_else(repClass_org=="DNA", repClass_org,
if_else(repClass_org=="Retroposon",repClass_org,
if_else(is.na(repClass_org), repClass_org, "Other"))))))) %>%
dplyr::select(Peakid, repName,repClass,repClass_org, repFamily, width, TEstatus, mrc, per_ol)
Eight_group_TE %>% distinct(Peakid,.keep_all = TRUE) %>%
group_by(mrc, TEstatus) %>%
tally# A tibble: 18 × 3
# Groups: mrc [9]
mrc TEstatus n
<chr> <chr> <int>
1 EAR_close TE_peak 1728
2 EAR_close not_TE_peak 2568
3 EAR_open TE_peak 1398
4 EAR_open not_TE_peak 1760
5 ESR_OC TE_peak 496
6 ESR_OC not_TE_peak 664
7 ESR_close TE_peak 3657
8 ESR_close not_TE_peak 5692
9 ESR_open TE_peak 2441
10 ESR_open not_TE_peak 2831
11 LR_close TE_peak 5833
12 LR_close not_TE_peak 8239
13 LR_open TE_peak 13022
14 LR_open not_TE_peak 15515
15 NR TE_peak 37456
16 NR not_TE_peak 48872
17 not_mrc TE_peak 1408
18 not_mrc not_TE_peak 1977This section reclassifies any TE that is NOT a LINE, SINE, LTR, DNA, or retroposon as “other”. Still using > 50% coverage cutoff
per_cov <- 0.5
subsetall_df <- Eight_group_TE %>%
dplyr::filter(mrc != "not_mrc") %>%
mutate(mrc="all_peaks")
# h.genome_df <- LiSiLTDNRe %>%
h.genome_df <- repeatmasker %>%
mutate(repClass_org = repClass) %>% #copy repClass for storage
mutate(repClass=if_else(##relable repClass with other
repClass_org=="LINE", repClass_org,if_else(repClass_org=="SINE",repClass_org,if_else(repClass_org=="LTR", repClass_org, if_else(repClass_org=="DNA", repClass_org, if_else(repClass_org=="Retroposon",repClass_org,"Other")))))) %>%
mutate(Peakid=paste0(rownames(.),"_TE")) %>%
dplyr::select(Peakid,repName,repClass, repFamily,repClass_org) %>%
mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA", width="NA")
Eight_group_TE %>%
dplyr::filter(mrc != "not_mrc") %>%
# dplyr::filter(per_ol>per_cov) %>%
rbind(subsetall_df) %>%
mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks"))) %>%
dplyr::filter(TEstatus=="TE_peak") %>%
ggplot(., aes(x=mrc, fill= repClass))+
geom_bar(position="fill", col="black")+
theme_bw()+
ggtitle(paste("Repeat breakdown across eight clusters", per_cov))+
scale_fill_repeat()Now I will display without the “other” and regraph with new groups
Eight_group_TE %>%
dplyr::filter(mrc != "not_mrc") %>%
dplyr::filter(per_ol>per_cov) %>%
rbind(subsetall_df) %>%
mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks"))) %>%
dplyr::filter(TEstatus=="TE_peak") %>%
dplyr::filter(is.na(repClass)|repClass != "Other") %>%
ggplot(., aes(x=mrc, fill= repClass))+
geom_bar(position="fill", col="black")+
theme_bw()+
ggtitle(paste("Repeat breakdown across eight clusters without 'Other'", per_cov))+
scale_fill_repeat()Eight_group_TE %>%
mutate(repClass_org = repClass) %>%
# mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>%
dplyr::select(Peakid,repName,repClass,repFamily,repClass_org,width,TEstatus, mrc, per_ol)%>%
distinct(Peakid, .keep_all = TRUE)%>%
rbind((subsetall_df %>% distinct(Peakid,TEstatus,.keep_all = TRUE))) %>%
mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>%
mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
mutate(repClass=factor(repClass)) %>%
mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>%
dplyr::filter(mrc != "not_mrc") %>%
mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks"))) %>%
dplyr::filter(is.na(repClass)|repClass != "Other") %>%
ggplot(., aes(x=mrc, fill= TEstatus))+
geom_bar(position="fill", col="black")+
theme_classic()+
ggtitle(paste("TE status for eight MRCs and Family > 50 %"))Eight_group_TE %>%
mutate(repClass_org = repClass) %>%
mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>%
dplyr::select(Peakid,repName,repClass,repFamily,repClass_org,width,TEstatus, mrc, per_ol)%>%
distinct(Peakid, .keep_all = TRUE)%>%
rbind((subsetall_df %>% distinct(Peakid,TEstatus, .keep_all = TRUE))) %>%
mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>%
mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
mutate(repClass=factor(repClass)) %>%
dplyr::filter(mrc != "not_mrc") %>%
dplyr::filter(is.na(repClass)|repClass != "Other") %>%
group_by(TEstatus, mrc) %>%
tally %>%
pivot_wider(., id_cols = mrc, names_from = TEstatus, values_from = n) %>%
rowwise() %>%
mutate(perc_TE= (TE_peak/sum(c_across(TE_peak:not_TE_peak)))*100) %>%
kable(., caption = "Unique Peak TE status counts for each using >50% of TE LINEs,SINEs, LTRs,DNAs,and Retroposons") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14)%>%
scroll_box(height = "500px")| mrc | TE_peak | not_TE_peak | perc_TE |
|---|---|---|---|
| EAR_close | 1415 | 2574 | 35.47255 |
| EAR_open | 878 | 1761 | 33.27018 |
| ESR_OC | 433 | 667 | 39.36364 |
| ESR_close | 2739 | 5698 | 32.46415 |
| ESR_open | 1648 | 2841 | 36.71196 |
| LR_close | 4581 | 8251 | 35.69981 |
| LR_open | 10659 | 15560 | 40.65372 |
| NR | 26417 | 48978 | 35.03813 |
| all_peaks | 59855 | 97170 | 38.11813 |
Eight_group_TE %>%
mutate(repClass_org = repClass) %>%
# mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>%
dplyr::select(Peakid,repName,repClass,repFamily,repClass_org,width,TEstatus, mrc, per_ol)%>%
distinct(Peakid, .keep_all = TRUE)%>%
rbind(subsetall_df ) %>%
mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>%
mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
mutate(repClass=factor(repClass)) %>%
mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>%
dplyr::filter(mrc != "not_mrc") %>%
mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks"))) %>%
ggplot(., aes(x=mrc, fill= TEstatus))+
geom_bar(position="fill", col="black")+
theme_classic()+
ggtitle(paste("TE status for eight MRCs and Family > 50 %"))Eight_group_TE %>%
mutate(repClass_org = repClass) %>%
mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>%
dplyr::select(Peakid,repName,repClass,repFamily,repClass_org,width,TEstatus, mrc, per_ol)%>%
distinct(Peakid, .keep_all = TRUE)%>%
rbind(subsetall_df) %>%
mutate(repClass=if_else(per_ol>0.5, repClass,NA)) %>%
mutate(TEstatus= if_else(is.na(repClass), "not_TE_peak","TE_peak")) %>%
mutate(repClass=factor(repClass)) %>%
dplyr::filter(mrc != "not_mrc") %>%
group_by(TEstatus, mrc) %>%
tally %>%
pivot_wider(., id_cols = mrc, names_from = TEstatus, values_from = n) %>%
rowwise() %>%
mutate(perc_TE= (TE_peak/sum(c_across(TE_peak:not_TE_peak)))*100) %>%
kable(., caption = "Unique Peak TE status counts for each using >50% of TE") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14)%>%
scroll_box(height = "500px")| mrc | TE_peak | not_TE_peak | perc_TE |
|---|---|---|---|
| EAR_close | 1722 | 2574 | 40.08380 |
| EAR_open | 1397 | 1761 | 44.23686 |
| ESR_OC | 493 | 667 | 42.50000 |
| ESR_close | 3651 | 5698 | 39.05231 |
| ESR_open | 2431 | 2841 | 46.11153 |
| LR_close | 5821 | 8251 | 41.36583 |
| LR_open | 12977 | 15560 | 45.47430 |
| NR | 37350 | 48978 | 43.26522 |
| all_peaks | 120003 | 102381 | 53.96207 |
Class_status_df <-
Eight_group_TE %>%
dplyr::filter(mrc != "not_mrc") %>%
# mutate(mrc="all_peaks") %>%
# rbind(subsetall_df) %>%
mutate(Sine_status = if_else(is.na(repClass),"not_sine",
if_else(repClass=="SINE","sine_peak", "not_sine"))) %>%
mutate(Line_status = if_else(is.na(repClass),"not_line",
if_else(repClass=="LINE","line_peak", "not_line"))) %>%
mutate(LTR_status = if_else(is.na(repClass),"not_LTR",
if_else(repClass=="LTR","LTR_peak", "not_LTR"))) %>%
mutate(DNA_status = if_else(is.na(repClass),"not_DNA",
if_else(repClass=="DNA","DNA_peak", "not_DNA"))) %>%
mutate(Retro_status = if_else(is.na(repClass)&is.na(per_ol),"not_Retro",
if_else(repClass=="Retroposon","Retro_peak", "not_Retro"))) %>%
# mutate(TEstatus=if_else(is.na(repClass),"not_TE_peak","TE_peak")) %>%
mutate(TEstatus=factor(TEstatus, levels = c("TE_peak","not_TE_peak")))%>%
# dplyr::filter(mrc != "not_mrc") %>%
mutate(Sine_status=factor(Sine_status, levels = c("sine_peak","not_sine")),
Line_status=factor(Line_status, levels =c("line_peak","not_line")),
LTR_status=factor(LTR_status, levels =c("LTR_peak","not_LTR")),
DNA_status=factor(DNA_status, levels =c("DNA_peak","not_DNA")),
Retro_status=factor(Retro_status, levels =c("Retro_peak","not_Retro"))) %>%
# dplyr::filter(per_ol>per_cov|is.na(per_ol)) %>%
mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks")))Class_status_df %>% distinct(Peakid,.keep_all = TRUE) %>%
group_by(mrc, TEstatus) %>%
tally# A tibble: 16 × 3
# Groups: mrc [8]
mrc TEstatus n
<fct> <fct> <int>
1 EAR_open TE_peak 1398
2 EAR_open not_TE_peak 1760
3 EAR_close TE_peak 1728
4 EAR_close not_TE_peak 2568
5 ESR_open TE_peak 2441
6 ESR_open not_TE_peak 2831
7 ESR_close TE_peak 3657
8 ESR_close not_TE_peak 5692
9 ESR_OC TE_peak 496
10 ESR_OC not_TE_peak 664
11 LR_open TE_peak 13022
12 LR_open not_TE_peak 15515
13 LR_close TE_peak 5833
14 LR_close not_TE_peak 8239
15 NR TE_peak 37456
16 NR not_TE_peak 48872Class_status_df %>%
distinct(Peakid, mrc, Sine_status) %>%
ggplot(., aes(x=mrc, fill= Sine_status))+
geom_bar(position="fill", col="black")+
theme_classic()+
ggtitle("Sine_status")Class_status_df %>%
distinct(Peakid, mrc, Sine_status) %>%
group_by(mrc,Sine_status) %>%
tally %>%
pivot_wider(., id_cols = mrc, names_from = Sine_status, values_from = n) %>%
mutate(Per_peak = sine_peak/(not_sine+sine_peak)*100) %>%
kable(., caption= "Sine status of unique Peaks") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14) | mrc | sine_peak | not_sine | Per_peak |
|---|---|---|---|
| EAR_open | 800 | 2785 | 22.31520 |
| EAR_close | 1232 | 3638 | 25.29774 |
| ESR_open | 1379 | 4605 | 23.04479 |
| ESR_close | 2458 | 8046 | 23.40061 |
| ESR_OC | 388 | 956 | 28.86905 |
| LR_open | 8817 | 24248 | 26.66566 |
| LR_close | 3626 | 12252 | 22.83663 |
| NR | 23227 | 74915 | 23.66673 |
Class_status_df %>%
distinct(Peakid, mrc, Line_status) %>%
ggplot(., aes(x=mrc, fill= Line_status))+
geom_bar(position="fill", col="black")+
theme_classic()+
ggtitle("Line_status")Class_status_df %>%
distinct(Peakid, mrc, Line_status) %>%
group_by(mrc,Line_status) %>%
tally %>%
pivot_wider(., id_cols = mrc, names_from = Line_status, values_from = n) %>%
mutate(Per_peak = line_peak/(not_line+line_peak)*100) %>%
kable(., caption= "Line status of unique Peaks") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14) | mrc | line_peak | not_line | Per_peak |
|---|---|---|---|
| EAR_open | 603 | 2882 | 17.30273 |
| EAR_close | 950 | 3763 | 20.15701 |
| ESR_open | 1126 | 4749 | 19.16596 |
| ESR_close | 1939 | 8278 | 18.97817 |
| ESR_OC | 276 | 1023 | 21.24711 |
| LR_open | 7051 | 25214 | 21.85340 |
| LR_close | 3240 | 12339 | 20.79723 |
| NR | 18221 | 77137 | 19.10799 |
Class_status_df %>%
distinct(Peakid, mrc,LTR_status) %>%
ggplot(., aes(x=mrc, fill= LTR_status))+
geom_bar(position="fill", col="black")+
theme_classic()+
ggtitle("LTR_status")Class_status_df %>%
distinct(Peakid, mrc, LTR_status) %>%
group_by(mrc,LTR_status) %>%
tally %>%
pivot_wider(., id_cols = mrc, names_from = LTR_status, values_from = n) %>%
mutate(Per_peak = LTR_peak/(not_LTR+LTR_peak)*100) %>%
kable(., caption= "LTR status of unique Peaks") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14) | mrc | LTR_peak | not_LTR | Per_peak |
|---|---|---|---|
| EAR_open | 356 | 2972 | 10.69712 |
| EAR_close | 674 | 3905 | 14.71937 |
| ESR_open | 621 | 4969 | 11.10912 |
| ESR_close | 1264 | 8614 | 12.79611 |
| ESR_OC | 198 | 1053 | 15.82734 |
| LR_open | 4871 | 26033 | 15.76171 |
| LR_close | 2242 | 12784 | 14.92080 |
| NR | 12012 | 79598 | 13.11211 |
Class_status_df %>%
distinct(Peakid, mrc, DNA_status) %>%
ggplot(., aes(x=mrc, fill= DNA_status))+
geom_bar(position="fill", col="black")+
theme_classic()+
ggtitle("DNA_status")Class_status_df %>%
distinct(Peakid, mrc, DNA_status) %>%
group_by(mrc,DNA_status) %>%
tally %>%
pivot_wider(., id_cols = mrc, names_from = DNA_status, values_from = n) %>%
mutate(Per_peak = DNA_peak/(not_DNA+DNA_peak)*100) %>%
kable(., caption= "DNA status of unique Peaks") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14) | mrc | DNA_peak | not_DNA | Per_peak |
|---|---|---|---|
| EAR_open | 269 | 3045 | 8.117079 |
| EAR_close | 363 | 4137 | 8.066667 |
| ESR_open | 486 | 5091 | 8.714363 |
| ESR_close | 777 | 9017 | 7.933429 |
| ESR_OC | 124 | 1112 | 10.032362 |
| LR_open | 3311 | 27192 | 10.854670 |
| LR_close | 1363 | 13484 | 9.180306 |
| NR | 8093 | 83036 | 8.880817 |
Class_status_df %>%
distinct(Peakid, mrc, Retro_status) %>%
ggplot(., aes(x=mrc, fill= Retro_status))+
geom_bar(position="fill", col="black")+
theme_classic()+
ggtitle("Retroposon status")Class_status_df %>%
distinct(Peakid, mrc, Retro_status) %>%
group_by(mrc,Retro_status) %>%
tally %>%
pivot_wider(., id_cols = mrc, names_from = Retro_status, values_from = n) %>%
mutate(Per_peak = Retro_peak/(not_Retro+Retro_peak)*100) %>%
kable(., caption= "Retro status of unique Peaks") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14) | mrc | Retro_peak | not_Retro | Per_peak |
|---|---|---|---|
| EAR_open | 21 | 3149 | 0.6624606 |
| EAR_close | 7 | 4292 | 0.1628286 |
| ESR_open | 40 | 5260 | 0.7547170 |
| ESR_close | 11 | 9346 | 0.1175590 |
| ESR_OC | 2 | 1159 | 0.1722653 |
| LR_open | 36 | 28529 | 0.1260284 |
| LR_close | 18 | 14067 | 0.1277955 |
| NR | 148 | 86286 | 0.1712289 |
####### LOoKing at the results from TE counts across clusters##### with cutoff
chi_TE_Eight <- Eight_group_TE %>%
# dplyr::filter(is.na(per_ol)|per_ol>.5) %>%
dplyr::select(Peakid,TEstatus, mrc)%>%
distinct(Peakid, .keep_all = TRUE) %>%
group_by(mrc,TEstatus) %>%
tally %>%
ungroup() %>%
pivot_wider(., id_cols = mrc, names_from = TEstatus, values_from = n) %>%
column_to_rownames("mrc")
chi_TE_nine_mat <- chi_TE_Eight %>% as.matrix
EARopenvNR <- matrix(c(chi_TE_nine_mat[2,1],chi_TE_nine_mat[2,2],chi_TE_nine_mat[8,1],chi_TE_nine_mat[8,2]),ncol=2, byrow=TRUE)%>% chisq.test(.)
EARclosevNR <- matrix(c(chi_TE_nine_mat[1,1],chi_TE_nine_mat[1,2],chi_TE_nine_mat[8,1],chi_TE_nine_mat[8,2]),ncol=2, byrow=TRUE)%>% chisq.test(.)
ESRopenvNR <- matrix(c(chi_TE_nine_mat[5,1],chi_TE_nine_mat[5,2],chi_TE_nine_mat[8,1],chi_TE_nine_mat[8,2]),ncol=2, byrow=TRUE)%>% chisq.test(.)
ESRclosevNR <- matrix(c(chi_TE_nine_mat[4,1],chi_TE_nine_mat[4,2],chi_TE_nine_mat[8,1],chi_TE_nine_mat[8,2]),ncol=2, byrow=TRUE)%>% chisq.test(.)
ESROCvNR <- matrix(c(chi_TE_nine_mat[3,1],chi_TE_nine_mat[3,2],chi_TE_nine_mat[8,1],chi_TE_nine_mat[8,2]),ncol=2, byrow=TRUE)%>% chisq.test(.)
LRopenvNR <- matrix(c(chi_TE_nine_mat[7,1],chi_TE_nine_mat[7,2],chi_TE_nine_mat[8,1],chi_TE_nine_mat[8,2]),ncol=2, byrow=TRUE) %>% chisq.test(.)
LRclosevNR <- matrix(c(chi_TE_nine_mat[6,1],chi_TE_nine_mat[6,2],chi_TE_nine_mat[8,1],chi_TE_nine_mat[8,2]),ncol=2, byrow=TRUE)%>% chisq.test(.)
pvalue <- c(EARclosevNR$p.value,
EARopenvNR$p.value,
ESROCvNR$p.value,
ESRclosevNR$p.value,
ESRopenvNR$p.value,
LRclosevNR$p.value,
LRopenvNR$p.value,
"na",
"not checked")
chi_TE_Eight %>%
cbind(pvalue) %>%
mutate(pvalue= as.numeric(pvalue)) %>%
mutate(signif=if_else(pvalue<0.005,"***",if_else(pvalue<0.01,"**",if_else(pvalue<0.05,"*","ns")))) %>%
mutate(per_TE=TE_peak/(TE_peak+not_TE_peak)*100) %>%
mutate(per_TE=sprintf("%.2f%% ",per_TE)) %>%
kable(., caption = "Unique Peak TE status with all TEs for each MRC, >50% TE coverage") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14) %>%
scroll_box(height = "500px")| TE_peak | not_TE_peak | pvalue | signif | per_TE | |
|---|---|---|---|---|---|
| EAR_close | 1728 | 2568 | 0.0000469 | *** | 40.22% |
| EAR_open | 1398 | 1760 | 0.3359162 | ns | 44.27% |
| ESR_OC | 496 | 664 | 0.6892784 | ns | 42.76% |
| ESR_close | 3657 | 5692 | 0.0000000 | *** | 39.12% |
| ESR_open | 2441 | 2831 | 0.0000367 | *** | 46.30% |
| LR_close | 5833 | 8239 | 0.0000176 | *** | 41.45% |
| LR_open | 13022 | 15515 | 0.0000000 | *** | 45.63% |
| NR | 37456 | 48872 | NA | NA | 43.39% |
| not_mrc | 1408 | 1977 | NA | NA | 41.60% |
per_cov <- 0.5
ggline_df <-Line_repeats %>%
as.data.frame() %>%
tidyr::unite(Peakid,seqnames:end, sep= ".") %>%
dplyr::select(Peakid,repName,repClass, repFamily,width) %>%
mutate(repClass_org=repClass) %>%
mutate(repClass=if_else(##relable repClass with other
repClass_org=="LINE", repClass_org,
if_else(repClass_org=="SINE",repClass_org,
if_else(repClass_org=="LTR", repClass_org,
if_else(repClass_org=="DNA", repClass_org,
if_else(repClass_org=="Retroposon",repClass_org,
if_else(is.na(repClass_org), repClass_org,"Other"))))))) %>%
mutate(TEstatus ="TE_peak", mrc="h.genome", per_ol = "NA") %>%
rbind(Eight_group_TE %>% dplyr::filter(repClass=="LINE") %>% mutate(mrc="all_peaks") %>% mutate(repClass_org=repClass))
ggsine_df <-
Sine_repeats %>%
as.data.frame() %>%
tidyr::unite(Peakid,seqnames:end, sep= ".") %>%
dplyr::select(Peakid,repName,repClass, repFamily,width) %>%
mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA") %>%
mutate(repClass_org=repClass) %>%
mutate(repClass=if_else(##relable repClass with other
repClass_org=="LINE", repClass_org,
if_else(repClass_org=="SINE",repClass_org,
if_else(repClass_org=="LTR", repClass_org,
if_else(repClass_org=="DNA", repClass_org,
if_else(repClass_org=="Retroposon",repClass_org,
if_else(is.na(repClass_org), repClass_org,"Other"))))))) %>%
rbind(Eight_group_TE %>% dplyr::filter(repClass=="SINE") %>% mutate(mrc="all_peaks") %>% mutate(repClass_org=repClass))
ggLTR_df <-LTR_repeats %>%
as.data.frame() %>%
tidyr::unite(Peakid,seqnames:end, sep= ".") %>%
dplyr::select(Peakid,repName,repClass, repFamily,width) %>%
mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA") %>%
mutate(repClass_org=repClass) %>%
mutate(repClass=if_else(##relable repClass with other
repClass_org=="LINE", repClass_org,
if_else(repClass_org=="SINE",repClass_org,
if_else(repClass_org=="LTR", repClass_org,
if_else(repClass_org=="DNA", repClass_org,
if_else(repClass_org=="Retroposon",repClass_org,
if_else(is.na(repClass_org), repClass_org,"Other"))))))) %>%
rbind(Eight_group_TE %>% dplyr::filter(repClass=="LTR") %>% mutate(mrc="all_peaks") %>% mutate(repClass_org=repClass))
ggDNA_df <-DNA_repeats %>%
as.data.frame() %>%
tidyr::unite(Peakid,seqnames:end, sep= ".") %>%
dplyr::select(Peakid,repName,repClass, repFamily,width) %>%
mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA") %>%
mutate(repClass_org=repClass) %>%
mutate(repClass=if_else(##relable repClass with other
repClass_org=="LINE", repClass_org,
if_else(repClass_org=="SINE",repClass_org,
if_else(repClass_org=="LTR", repClass_org,
if_else(repClass_org=="DNA", repClass_org,
if_else(repClass_org=="Retroposon",repClass_org,
if_else(is.na(repClass_org), repClass_org,"Other"))))))) %>%
rbind(Eight_group_TE %>% dplyr::filter(repClass=="DNA") %>% mutate(mrc="all_peaks") %>% mutate(repClass_org=repClass))
ggretroposon_df <-retroposon_repeats %>%
as.data.frame() %>%
tidyr::unite(Peakid,seqnames:end, sep= ".") %>%
dplyr::select(Peakid,repName,repClass, repFamily,width) %>%
mutate(TEstatus ="TE_peak", mrc="h.genome",per_ol = "NA") %>%
mutate(repClass_org=repClass) %>%
mutate(repClass=if_else(##relable repClass with other
repClass_org=="LINE", repClass_org,
if_else(repClass_org=="SINE",repClass_org,
if_else(repClass_org=="LTR", repClass_org,
if_else(repClass_org=="DNA", repClass_org,
if_else(repClass_org=="Retroposon",repClass_org,
if_else(is.na(repClass_org), repClass_org,"Other"))))))) %>%
rbind(Eight_group_TE %>% dplyr::filter(repClass=="Retroposon") %>% mutate(mrc="all_peaks") %>% mutate(repClass_org=repClass)) eight_lines <- Eight_group_TE %>%
dplyr::filter(repClass=="LINE") %>%
# distinct(mrc)
dplyr::filter(mrc != "not_mrc") %>%
rbind(., ggline_df) %>%
mutate(repFamily=factor(repFamily)) %>%
mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks","h.genome"))) %>%
dplyr::filter(mrc != "h.genome")
eight_lines %>%
ggplot(., aes(x=mrc, fill= repFamily))+
geom_bar(position="fill", col="black")+
theme_bw()+
ggtitle(paste("LINE breakdown by eight-clusters and Family", per_cov))+
scale_fill_lines()eight_lines %>%
group_by(mrc,repFamily) %>%
tally %>%
pivot_wider(., id_cols = mrc, names_from = repFamily, values_from = n) %>%
rowwise() %>%
mutate(total= sum(c_across("CR1":"RTE-X"),na.rm =TRUE)) %>%
kable(., caption="Breakdown of SINE counts by Family") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14) %>%
scroll_box(height = "500px")| mrc | CR1 | Dong-R4 | L1 | L2 | Penelope | RTE-BovB | RTE-X | total |
|---|---|---|---|---|---|---|---|---|
| EAR_open | 39 | 1 | 253 | 427 | 1 | 9 | 9 | 739 |
| EAR_close | 81 | 1 | 348 | 633 | NA | 25 | 12 | 1100 |
| ESR_open | 112 | NA | 492 | 748 | 2 | 26 | 23 | 1403 |
| ESR_close | 165 | NA | 717 | 1285 | 1 | 49 | 16 | 2233 |
| ESR_OC | 24 | 1 | 110 | 179 | NA | 4 | 6 | 324 |
| LR_open | 710 | 7 | 2724 | 4849 | 9 | 142 | 128 | 8569 |
| LR_close | 237 | 3 | 1335 | 2058 | 1 | 81 | 62 | 3777 |
| NR | 1660 | 4 | 7395 | 11769 | 29 | 290 | 276 | 21423 |
| all_peaks | 3101 | 17 | 13664 | 22418 | 45 | 649 | 546 | 40440 |
eight_sines <- Eight_group_TE %>%
dplyr::filter(repClass=="SINE") %>%
dplyr::filter(mrc != "not_mrc") %>%
rbind(., ggsine_df) %>%
mutate(repFamily=factor(repFamily)) %>%
mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks","h.genome"))) %>%
dplyr::filter(mrc != "h.genome")
eight_sines %>%
ggplot(., aes(x=mrc, fill= repFamily))+
geom_bar(position="fill", col="black")+
theme_bw()+
ggtitle(paste("SINE breakdown by breakdown by eight-clusters and Family",per_cov))+
scale_fill_sines()eight_sines %>%
group_by(mrc,repFamily) %>%
tally %>%
pivot_wider(., id_cols = mrc, names_from = repFamily, values_from = n) %>%
rowwise() %>%
mutate(total_sines= sum(c_across(1:6),na.rm =TRUE)) %>%
kable(., caption="Breakdown of SINE counts by Family") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14)%>%
scroll_box(height = "500px")| mrc | 5S-Deu-L2 | Alu | MIR | tRNA | tRNA-Deu | tRNA-RTE | total_sines |
|---|---|---|---|---|---|---|---|
| EAR_open | 4 | 459 | 530 | 4 | 1 | 5 | 1003 |
| EAR_close | 1 | 709 | 822 | 2 | NA | 11 | 1545 |
| ESR_open | 11 | 896 | 829 | 4 | 3 | 10 | 1753 |
| ESR_close | 10 | 1247 | 1727 | 11 | NA | 15 | 3010 |
| ESR_OC | 2 | 247 | 237 | NA | NA | 2 | 488 |
| LR_open | 42 | 5631 | 5179 | 32 | 12 | 100 | 10996 |
| LR_close | 35 | 1842 | 2440 | 13 | 7 | 30 | 4367 |
| NR | 127 | 12831 | 15289 | 84 | 30 | 171 | 28532 |
| all_peaks | 239 | 24295 | 27669 | 154 | 53 | 345 | 52755 |
eight_LTRs <- Eight_group_TE %>%
dplyr::filter(repClass=="LTR") %>%
dplyr::filter(mrc != "not_mrc") %>%
rbind(., ggLTR_df) %>%
mutate(repFamily=factor(repFamily)) %>%
mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks","h.genome"))) %>%
dplyr::filter(mrc != "h.genome")
eight_LTRs %>%
ggplot(., aes(x=mrc, fill= repFamily))+
geom_bar(position="fill", col="black")+
theme_bw()+
ggtitle(paste("LTR breakdown by breakdown by eight-clusters and Family",per_cov))+
scale_fill_LTRs()eight_LTRs %>%
group_by(mrc,repFamily) %>%
tally %>%
pivot_wider(., id_cols = mrc, names_from = repFamily, values_from = n) %>%
rowwise() %>%
mutate(total= sum(c_across(1:9),na.rm =TRUE)) %>%
kable(., caption="Breakdown of LTR counts by Family") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14)%>%
scroll_box(height = "500px")| mrc | ERV1 | ERVK | ERVL | ERVL-MaLR | ERVL? | Gypsy | Gypsy? | LTR | ERV1? | total |
|---|---|---|---|---|---|---|---|---|---|---|
| EAR_open | 122 | 21 | 108 | 157 | 3 | 10 | 2 | 4 | NA | 427 |
| EAR_close | 201 | 23 | 202 | 335 | 4 | 15 | 5 | 2 | NA | 787 |
| ESR_open | 239 | 10 | 184 | 305 | 4 | 16 | 12 | 3 | 3 | 776 |
| ESR_close | 353 | 40 | 428 | 618 | 4 | 40 | 12 | 10 | 3 | 1508 |
| ESR_OC | 57 | 2 | 79 | 92 | NA | 7 | 7 | NA | 1 | 245 |
| LR_open | 1547 | 79 | 1602 | 2603 | 20 | 142 | 93 | 22 | 8 | 6116 |
| LR_close | 614 | 42 | 843 | 1046 | 10 | 69 | 40 | 16 | 4 | 2684 |
| NR | 4010 | 526 | 4215 | 5212 | 97 | 405 | 212 | 58 | 22 | 14757 |
| all_peaks | 7266 | 755 | 7821 | 10588 | 147 | 719 | 390 | 116 | 42 | 27844 |
eight_DNA <- Eight_group_TE %>%
dplyr::filter(repClass=="DNA") %>%
dplyr::filter(mrc != "not_mrc") %>%
rbind(., ggDNA_df) %>%
mutate(repFamily=factor(repFamily)) %>%
mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks","h.genome"))) %>%
dplyr::filter(mrc != "h.genome")
eight_DNA %>%
ggplot(., aes(x=mrc, fill= repFamily))+
geom_bar(position="fill", col="black")+
theme_bw()+
ggtitle(paste("DNA breakdown by breakdown by eight-clusters and Family",per_cov))+
scale_fill_DNAs()eight_DNA %>%
group_by(mrc,repFamily) %>%
tally %>%
pivot_wider(., id_cols = mrc, names_from = repFamily, values_from = n) %>%
rowwise() %>%
mutate(total= sum(c_across(1:18),na.rm =TRUE)) %>%
kable(., caption="Breakdown of DNA counts by Family") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14)%>%
scroll_box(height = "500px")| mrc | DNA | hAT | hAT-Ac | hAT-Blackjack | hAT-Charlie | hAT-Tip100 | PiggyBac | PiggyBac? | TcMar-Mariner | TcMar-Tc2 | TcMar-Tigger | hAT-Tip100? | hAT? | MULE-MuDR | TcMar? | PIF-Harbinger | TcMar | TcMar-Pogo | total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| EAR_open | 2 | 11 | 6 | 11 | 165 | 31 | 1 | 1 | 5 | 1 | 67 | NA | NA | NA | NA | NA | NA | NA | 301 |
| EAR_close | 4 | 7 | 1 | 21 | 228 | 52 | 1 | 1 | 8 | 3 | 81 | 1 | NA | NA | NA | NA | NA | NA | 408 |
| ESR_open | NA | 14 | 10 | 27 | 262 | 65 | 6 | NA | 12 | 3 | 141 | 4 | 1 | 1 | NA | NA | NA | NA | 546 |
| ESR_close | 6 | 19 | 14 | 44 | 496 | 136 | NA | NA | 6 | 6 | 117 | 2 | 5 | 2 | 1 | NA | NA | NA | 854 |
| ESR_OC | 1 | NA | 4 | 2 | 75 | 12 | NA | NA | 4 | 5 | 32 | NA | NA | NA | NA | 1 | NA | NA | 136 |
| LR_open | 36 | 52 | 42 | 131 | 1873 | 370 | 16 | 5 | 55 | 34 | 1155 | 14 | 12 | 11 | 2 | NA | 1 | NA | 3809 |
| LR_close | 14 | 33 | 26 | 50 | 813 | 261 | 6 | 1 | 18 | 13 | 273 | 7 | 2 | 3 | 1 | NA | 1 | NA | 1522 |
| NR | 61 | 135 | 142 | 371 | 4804 | 1132 | 58 | 13 | 106 | 82 | 2023 | 65 | 25 | 11 | 8 | 2 | 1 | 1 | 9040 |
| all_peaks | 127 | 276 | 250 | 670 | 8893 | 2097 | 89 | 22 | 219 | 149 | 3979 | 95 | 45 | 29 | 13 | 3 | 3 | 1 | 16960 |
eight_retro <- Eight_group_TE %>%
dplyr::filter(repClass=="Retroposon") %>%
dplyr::filter(mrc != "not_mrc") %>%
rbind(., ggretroposon_df) %>%
mutate(repName=factor(repName)) %>%
mutate(mrc=factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close","ESR_OC", "LR_open","LR_close","NR","all_peaks","h.genome"))) %>%
dplyr::filter(mrc != "h.genome")
eight_retro %>%
ggplot(., aes(x=mrc, fill= repName))+
geom_bar(position="fill", col="black")+
theme_classic()+
ggtitle(paste("Retroposon breakdown by by eight-clusters and Family",per_cov))+
scale_fill_retroposons()eight_retro %>%
group_by(mrc,repName) %>%
tally %>%
pivot_wider(., id_cols = mrc, names_from = repName, values_from = n) %>%
rowwise() %>%
mutate(total= sum(c_across(1:6),na.rm =TRUE)) %>%
kable(., caption="Breakdown of Retroposon counts by Name") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14)%>%
scroll_box(height = "500px")| mrc | SVA_A | SVA_B | SVA_D | SVA_E | SVA_F | SVA_C | total |
|---|---|---|---|---|---|---|---|
| EAR_open | 1 | 1 | 13 | 1 | 6 | NA | 22 |
| EAR_close | 1 | 2 | 3 | 1 | NA | NA | 7 |
| ESR_open | 5 | 1 | 23 | 1 | 8 | 3 | 41 |
| ESR_close | 3 | 2 | 4 | 1 | 1 | NA | 11 |
| ESR_OC | NA | NA | 1 | NA | NA | 1 | 2 |
| LR_open | 8 | 5 | 18 | 1 | 3 | 3 | 38 |
| LR_close | 7 | 3 | 2 | 3 | 1 | 2 | 18 |
| NR | 22 | 30 | 55 | 10 | 16 | 15 | 148 |
| all_peaks | 50 | 44 | 121 | 19 | 36 | 25 | 295 |
cpgislands_df <- read.delim("data/other_papers/cpg_islands.tsv")
cpg_cCREs_df <- read_delim("data/other_papers/cpg_cCREs.tsv", delim="\t")
# aligncre <- genomation::readBed("data/enhancerdata/ENCFF867HAD_ENCFF152PBB_ENCFF352YYH_ENCFF252IVK.7group.bed") %>% as.data.frame
CPG_promoters_gr <- cpg_cCREs_df %>%
dplyr::rename(.,"seqnames"=X1,"start"=X2,"end"=X3,"promotor_name"=X4,"length"=X5,"strand"=X6,"color"=X9) %>%
dplyr::filter(color ==25500) %>%
dplyr::select(seqnames:strand,color) %>%
GRanges()
Peaks_v_cpgpromo <- join_overlap_intersect(CPG_promoters_gr,Col_TSS_data_gr) %>% as.data.frame
cpg_island_gr <- cpgislands_df %>%
makeGRangesFromDataFrame(., keep.extra.columns = TRUE, seqnames.field = "chrom", start.field = "chromStart", end.field = "chromEnd",starts.in.df.are.0based=TRUE)
Col_TSS_data_gr$peak_width <- width(Col_TSS_data_gr)
cpg_island_gr$cpg_width <- width(cpg_island_gr)Col_fullDF_cug_overlap <- join_overlap_intersect(Col_TSS_data_gr,cpg_island_gr)
Col_fullDF_cug_overlap <-Col_fullDF_cug_overlap %>%
as.data.frame %>%
mutate(per_ol=width/cpg_width)
Col_fullDF_cug_overlap %>%
as.data.frame() %>%
# group_by(name) %>%
distinct(Peakid) %>%
tally %>%
kable(., caption="Count of peaks with CG islands") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14)%>%
scroll_box(height = "500px")| n |
|---|
| 18769 |
Col_fullDF_cug_overlap %>%
as.data.frame() %>%
dplyr::filter(per_ol>0.5) %>%
distinct(Peakid) %>%
tally %>%
kable(., caption="Count of peaks with >50% of CG islands") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14)%>%
scroll_box(height = "500px")| n |
|---|
| 15310 |
# CUG_mrc_status_list <-
# Col_TSS_data_gr%>%
# as.data.frame() %>%
# left_join(., (Col_fullDF_cug_overlap %>% as.data.frame(.)), by =c("seqnames"="seqnames","start"="start","end"="end","Peakid"="Peakid", "NCBI_gene"="NCBI_gene", "ensembl_ID"="ensembl_ID","dist_to_NG"="dist_to_NG", "SYMBOL" = "SYMBOL", "peak_width"="peak_width")) %>%
# left_join(., (Peaks_v_cpgpromo %>% dplyr::select(promotor_name,Peakid,peak_width)), by=c("peak_width"="peak_width","Peakid"="Peakid")) %>%
# dplyr::select(Peakid, name,cpgNum:promotor_name) %>%
# mutate(cugstatus=if_else(is.na(cpgNum),"not_CGi_peak","CGi_peak")) %>%
# mutate(prom_status= if_else(is.na(promotor_name),"not_CpGpromo","CpGpromo")) %>%
# mutate(mrc=if_else(Peakid %in% EAR_df$id, "EAR",
# if_else(Peakid %in% ESR_df$id,"ESR",
# if_else(Peakid %in% LR_df$id,"LR",
# if_else(Peakid %in% NR_df$id,"NR","not_mrc"))))) %>% distinct()
#
CUG_mrc_nine_list <-
Col_TSS_data_gr%>% as.data.frame() %>%
left_join(., (Col_fullDF_cug_overlap %>% as.data.frame(.)), by =c("seqnames"="seqnames","start"="start","end"="end","Peakid"="Peakid", "NCBI_gene"="NCBI_gene", "ensembl_ID"="ensembl_ID","dist_to_NG"="dist_to_NG", "SYMBOL" = "SYMBOL", "peak_width"="peak_width")) %>%
left_join(., (Peaks_v_cpgpromo %>% dplyr::select(promotor_name,Peakid,peak_width)), by=c("peak_width"="peak_width","Peakid"="Peakid")) %>%
dplyr::select(Peakid, name,cpgNum:promotor_name) %>%
mutate(cugstatus=if_else(is.na(cpgNum),"not_CGi_peak","CGi_peak")) %>%
mutate(prom_status= if_else(is.na(promotor_name),"not_CpGpromo","CpGpromo")) %>%
mutate(mrc=if_else(Peakid %in% EAR_open$Peakid, "EAR_open",
if_else(Peakid %in% EAR_close$Peakid, "EAR_close",
if_else(Peakid %in% ESR_open$Peakid,"ESR_open",
if_else(Peakid %in% ESR_close$Peakid,"ESR_close",
if_else(Peakid %in% ESR_OC$Peakid,"ESR_OC",
if_else(Peakid %in% LR_open$Peakid,"LR_open",
if_else(Peakid %in% LR_close$Peakid,"LR_close",
if_else(Peakid %in% NR_df$Peakid,"NR","not_mrc"))))))))) %>%
distinct()
#
# CUG_mrc_status_list %>%
# group_by(cugstatus, mrc) %>%
# distinct(Peakid) %>%
# count %>%
# pivot_wider(., id_cols = mrc, names_from = cugstatus, values_from = n) %>%
# kable(., caption="Breakdown of CG islands overlap four groups") %>%
# kable_paper("striped", full_width = TRUE) %>%
# kable_styling(full_width = FALSE, font_size = 14)
# CUG_mrc_status_list %>%
# mutate(mrc=factor(mrc, levels = c("NR", "EAR", "ESR","LR","not_mrc"))) %>%
# group_by(cugstatus, mrc) %>%
# ggplot(., aes(x = mrc, fill = cugstatus)) +
# geom_bar(position="fill",color = "black")+
# theme_bw()+
# ggtitle("CG islands by mrc")
# subtitle=paste((CUG_mrc_status_list %>% dplyr::filter(cugstatus=="CGi_peak") %>% count(cugstatus))$n))
CUG_mrc_nine_list %>%
distinct(Peakid,.keep_all = TRUE) %>%
mutate(mrc="full_list") %>%
rbind(., (CUG_mrc_nine_list %>% distinct(Peakid,.keep_all = TRUE))) %>%
mutate(mrc=factor(mrc, levels=c("EAR_open","EAR_close","ESR_open","ESR_close","ESR_OC","LR_open","LR_close","NR","not-mrc","full_list"))) %>%
dplyr::filter(mrc !="not_mrc") %>%
group_by(cugstatus, mrc) %>%
ggplot(., aes(x = mrc, fill = cugstatus)) +
geom_bar(position="fill",color = "black")+
theme_bw()+
ggtitle("CG islands by mrc")# subtitle=paste((CUG_mrc_nine_list %>% dplyr::filter(cugstatus=="CGi_peak") %>% count(cugstatus))$n, "CG island peaks"))
CUG_mrc_nine_list %>%
distinct(Peakid,.keep_all = TRUE) %>%
dplyr::filter(mrc != "not_mrc") %>%
mutate(mrc="full_list") %>%
rbind(., (CUG_mrc_nine_list %>% distinct(Peakid,.keep_all = TRUE))) %>%
mutate(mrc=factor(mrc, levels=c("EAR_open","EAR_close","ESR_open","ESR_close","ESR_OC","LR_open","LR_close","NR","not-mrc","full_list"))) %>%
dplyr::filter(mrc !="not_mrc") %>%
group_by(cugstatus, mrc) %>%
tally %>%
pivot_wider(., id_cols = mrc, names_from = cugstatus, values_from = n) %>%
kable(., caption="Breakdown of CG islands overlap with not_mrc removed") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14)%>%
scroll_box(height = "500px")| mrc | CGi_peak | not_CGi_peak |
|---|---|---|
| EAR_open | 81 | 3077 |
| EAR_close | 17 | 4279 |
| ESR_open | 139 | 5133 |
| ESR_close | 71 | 9278 |
| LR_open | 307 | 28230 |
| LR_close | 102 | 13970 |
| NR | 1265 | 85063 |
| full_list | 1982 | 150190 |
| ESR_OC | NA | 1160 |
Col_fullDF_cug_overlap %>%
as.data.frame %>%
ggplot(., aes (x = width))+
geom_density(color="darkblue",fill="lightblue",aes(alpha = 0.5))+
theme_classic()+
ggtitle("Distribution of CGisland overlap widths",subtitle = " limited x axis")+
coord_cartesian(xlim= c(0,2500))cpg_island_gr %>%
as.data.frame() %>%
ggplot(., aes (x = cpg_width))+
geom_density(aes(alpha = 0.5))+
theme_classic()+
ggtitle("Distribution of overlap widths of CGislands ",subtitle = " limited x axis")+
coord_cartesian(xlim= c(0,2500))# CUG_mrc_status_list %>%
# mutate(mrc="full_list") %>%
# rbind(., CUG_mrc_status_list) %>%
# mutate(mrc=factor(mrc, levels=c("EAR","ESR","LR","NR","not-mrc","full_list"))) %>%
# dplyr::filter(mrc !="not_mrc") %>%
# dplyr::filter(cugstatus=="CGi_peak") %>%
# ggplot(., aes(x = mrc, fill = prom_status)) +
# geom_bar(position="fill",color = "black")+
# theme_bw()+
# ggtitle("CG islands promotors vs non-promotor CpGi by mrc", subtitle=paste(length(CUG_mrc_status_list$Peakid )))
promo_count_list <- CUG_mrc_nine_list %>%
dplyr::filter(mrc !="not_mrc") %>%
dplyr::filter(cugstatus=="CGi_peak") %>%
group_by(prom_status) %>%
tally()
CUG_mrc_nine_list %>%
mutate(mrc="full_list") %>%
rbind(., CUG_mrc_nine_list) %>%
mutate(mrc=factor(mrc, levels=c("EAR_open","EAR_close","ESR_open","ESR_close","ESR_OC","LR_open","LR_close","NR","not-mrc","full_list"))) %>%
dplyr::filter(mrc !="not_mrc") %>%
dplyr::filter(cugstatus=="CGi_peak") %>%
ggplot(., aes(x = mrc, fill = prom_status)) +
geom_bar(position="fill",color = "black")+
theme_bw()+
ggtitle("CG islands promotors vs non-promotor CpGi by mrc", subtitle=paste(promo_count_list[1,1],promo_count_list[1,2],"\n", promo_count_list [2,1],promo_count_list [2,2]))gwas_ACtox <- readRDS("data/gwas_1_dataframe.RDS")
gwas_ARR <- readRDS("data/gwas_2_dataframe.RDS")
gwas_ACresp <- readRDS("data/gwas_3_dataframe.RDS")
gwas_HD <- readRDS("data/gwas_4_dataframe.RDS")
gwas_HF <- readRDS("data/gwas_5_dataframe.RDS")
gwas_CAD <- readRDS( "data/CAD_gwas_dataframe.RDS")
gwas_MI <- readRDS("data/MI_gwas.RDS")
gwas_snp_list <- gwas_ACtox %>%
distinct(SNPS,.keep_all = TRUE) %>%
dplyr::select(CHR_ID, CHR_POS,SNPS) %>%
mutate(gwas="ACtox") %>%
rbind(gwas_ARR %>%
distinct(SNPS,.keep_all = TRUE) %>%
dplyr::select(CHR_ID, CHR_POS,SNPS) %>%
mutate(gwas="ARR")) %>%
rbind(gwas_ACresp %>%
distinct(SNPS,.keep_all = TRUE) %>%
dplyr::select(CHR_ID, CHR_POS,SNPS) %>%
mutate(gwas="ACresp")) %>%
rbind(gwas_HD %>%
distinct(SNPS,.keep_all = TRUE) %>%
dplyr::select(CHR_ID, CHR_POS,SNPS) %>%
mutate(gwas="HD")) %>%
rbind(gwas_HF %>%
distinct(SNPS,.keep_all = TRUE) %>%
dplyr::select(CHR_ID, CHR_POS,SNPS) %>%
mutate(gwas="HF")) %>%
rbind(gwas_CAD %>%
distinct(SNPS,.keep_all = TRUE) %>%
dplyr::select(CHR_ID, CHR_POS,SNPS) %>%
mutate(gwas="CAD")) %>%
rbind(gwas_MI %>%
distinct(SNPS,.keep_all = TRUE) %>%
dplyr::select(CHR_ID, CHR_POS,SNPS) %>%
mutate(gwas="MI")) %>%
separate_longer_delim(.,col= c(CHR_ID,CHR_POS,SNPS), delim= ";")
gwas_snp_gr <- gwas_snp_list %>%
mutate(CHR_ID=as.numeric(CHR_ID), CHR_POS=as.numeric(CHR_POS)) %>%
na.omit() %>%
mutate(start=CHR_POS, end=CHR_POS, chr=paste0("chr",CHR_ID)) %>%
GRanges()
# rtracklayer::export.bed(gwas_snp_gr,con="data/full_bedfiles/GWAS_SNP.bed",format="bed")
findOverlaps(gwas_snp_gr, all_TEs_gr)Hits object with 3432 hits and 0 metadata columns:
queryHits subjectHits
<integer> <integer>
[1] 1 4910496
[2] 4 1047158
[3] 7 4718029
[4] 11 116853
[5] 12 4826568
... ... ...
[3428] 7804 5009192
[3429] 7805 3904058
[3430] 7807 4735830
[3431] 7809 4615754
[3432] 7812 1872218
-------
queryLength: 7816 / subjectLength: 5683690test <- join_overlap_intersect(gwas_snp_gr, all_TEs_gr) %>% GRanges
##3413- (#3432 after separate)
test_new <- test %>%
as.data.frame %>%
dplyr::select(seqnames:gwas,repName:repFamily) %>%
GRanges()
peaks <-
Collapsed_peaks %>%
dplyr::select(chr:Peakid) %>%
GRanges()
peak_test <- join_overlap_intersect(test_new, peaks)
# peak_test 135
Col_fullDF_overlap %>%
as.data.frame %>%
dplyr::select(seqnames:Peakid,repName:repFamily) %>%
GRanges() %>%
join_overlap_intersect(.,gwas_snp_gr)GRanges object with 131 ranges and 8 metadata columns:
seqnames ranges strand | Peakid repName
<Rle> <IRanges> <Rle> | <character> <character>
[1] chr1 16012818 * | chr1.16012567.16013729 MIRb
[2] chr1 170224718 * | chr1.170224576.17022.. L1MA7
[3] chr1 170224718 * | chr1.170224576.17022.. L1MA7
[4] chr10 20953453 * | chr10.20953148.20953.. MLT1B
[5] chr10 20953453 * | chr10.20953148.20953.. MLT1B
... ... ... ... . ... ...
[127] chr8 124847608 * | chr8.124847104.12484.. MamTip2
[128] chr8 124847608 * | chr8.124847104.12484.. MamTip2
[129] chr9 107755513 * | chr9.107755276.10775.. Charlie13a
[130] chr9 107755513 * | chr9.107755276.10775.. Charlie13a
[131] chr9 123933491 * | chr9.123933461.12393.. MLT1J
repClass repFamily CHR_ID CHR_POS SNPS gwas
<character> <character> <numeric> <numeric> <character> <character>
[1] SINE MIR 1 16012818 rs10927886 HD
[2] LINE L1 1 170224718 rs12122060 ARR
[3] LINE L1 1 170224718 rs12122060 HD
[4] LTR ERVL-MaLR 10 20953453 rs7910227 ARR
[5] LTR ERVL-MaLR 10 20953453 rs7910227 HD
... ... ... ... ... ... ...
[127] DNA hAT-Tip100 8 124847608 rs34866937 HD
[128] DNA hAT-Tip100 8 124847608 rs34866937 HF
[129] DNA hAT-Charlie 9 107755513 rs944172 HD
[130] DNA hAT-Charlie 9 107755513 rs944172 CAD
[131] LTR ERVL-MaLR 9 123933491 rs10818894 ACresp
-------
seqinfo: 23 sequences from an unspecified genome; no seqlengthstest2 <- join_overlap_intersect(peaks, gwas_snp_gr)
test2 %>%
join_overlap_intersect(., all_TEs_gr) %>%
as.data.frame %>%
dplyr::select(seqnames:gwas,repName:repFamily) %>%
mutate(mrc=if_else(Peakid %in% EAR_open$Peakid, "EAR_open",
if_else(Peakid %in% EAR_close$Peakid, "EAR_close",
if_else(Peakid %in% ESR_open$Peakid,"ESR_open",
if_else(Peakid %in% ESR_close$Peakid,"ESR_close",
if_else(Peakid %in% ESR_OC$Peakid,"ESR_OC",
if_else(Peakid %in% LR_open$Peakid,"LR_open",
if_else(Peakid %in% LR_close$Peakid,"LR_close",
if_else(Peakid %in% NR_df$Peakid,"NR","not_mrc"))))))))) %>%
# distinct(Peakid, .keep_all = TRUE) %>%
group_by(gwas,mrc) %>%
tally# A tibble: 24 × 3
# Groups: gwas [6]
gwas mrc n
<chr> <chr> <int>
1 ACresp LR_open 2
2 ARR ESR_close 2
3 ARR LR_close 4
4 ARR LR_open 3
5 ARR NR 12
6 ARR not_mrc 1
7 CAD EAR_close 1
8 CAD EAR_open 1
9 CAD ESR_close 2
10 CAD LR_close 4
# ℹ 14 more rowsSNP_df <- test2 %>%
join_overlap_intersect(., all_TEs_gr) %>%
as.data.frame %>%
dplyr::select(seqnames:gwas,repName:repFamily) %>%
mutate(mrc=if_else(Peakid %in% EAR_open$Peakid, "EAR_open",
if_else(Peakid %in% EAR_close$Peakid, "EAR_close",
if_else(Peakid %in% ESR_open$Peakid,"ESR_open",
if_else(Peakid %in% ESR_close$Peakid,"ESR_close",
if_else(Peakid %in% ESR_OC$Peakid,"ESR_OC",
if_else(Peakid %in% LR_open$Peakid,"LR_open",
if_else(Peakid %in% LR_close$Peakid,"LR_close",
if_else(Peakid %in% NR_df$Peakid,"NR","not_mrc")))))))))
SNP_df %>% group_by(Peakid) %>%
summarise(snp_id=paste(unique(SNPS), collapse = ","),
gwas=paste(unique(gwas),collapse=","),
repName = paste(unique(repName),collapse=","),
mrc =paste(unique(mrc),collapse=","),
repFamily= paste(unique(repFamily),collapse = ","),
location_chr= paste(unique(CHR_ID),collapse = ",") ,
location= paste(unique(CHR_POS),collapse = ",") ,
) %>%
kable(., caption = "The output of all SNPs and their SNP category followed by location and peak") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14) %>%
scroll_box(height = "500px")| Peakid | snp_id | gwas | repName | mrc | repFamily | location_chr | location |
|---|---|---|---|---|---|---|---|
| chr1.16012567.16013729 | rs10927886 | HD | MIRb | ESR_close | MIR | 1 | 16012818 |
| chr1.170224576.170224916 | rs12122060 | ARR,HD | L1MA7 | LR_close | L1 | 1 | 170224718 |
| chr1.55055575.55055793 | rs472495 | HD,CAD | MLT2D | not_mrc | ERVL | 1 | 55055640 |
| chr10.103712814.103713354 | rs10509768 | ARR,HD | MIRb | NR | MIR | 10 | 103713072 |
| chr10.121155583.121156319 | rs17101521 | HD,CAD | LTR16A2 | NR | ERVL | 10 | 121156039 |
| chr10.20953148.20953475 | rs7910227 | ARR,HD | MLT1B | LR_close | ERVL-MaLR | 10 | 20953453 |
| chr11.100753128.100753902 | rs7947761 | HD,CAD | L1PBa | NR | L1 | 11 | 100753868 |
| chr11.118911506.118912630 | rs11606719 | HD,CAD | MIRb | NR | MIR | 11 | 118911765 |
| chr11.128759383.128760154 | rs672149 | HD | L2 | NR | L2 | 11 | 128759487 |
| chr11.19988504.19989024 | rs4757877,rs2625322 | ARR,HD | AmnSINE1 | LR_close | 5S-Deu-L2 | 11 | 19988745,19988805 |
| chr11.90455310.90455981 | rs534128177 | HD,CAD | LTR14B | NR | ERVK | 11 | 90455679 |
| chr11.9748359.9748943 | rs472109 | HD,CAD | LTR41 | LR_close | ERVL | 11 | 9748771 |
| chr12.106865628.106866040 | rs7977247 | HD,HF | L2a | LR_close | L2 | 12 | 106865692 |
| chr12.109538192.109538640 | rs75524776 | HD,CAD | MIRb | LR_close | MIR | 12 | 109538471 |
| chr12.111171885.111172119 | rs3809297 | ARR,HD | (TGCGTG)n | not_mrc | Simple_repeat | 12 | 111171923 |
| chr12.111569574.111570394 | rs653178 | HD,MI | MER3 | NR | hAT-Charlie | 12 | 111569952 |
| chr12.20004923.20005338 | rs11044977 | HD,MI | L2a | NR | L2 | 12 | 20005226 |
| chr12.24561685.24562685 | rs2291437 | ARR,HD | (CCACCTC)n | NR | Simple_repeat | 12 | 24562114 |
| chr13.110301444.110302036 | rs4773141 | HD,CAD | L2 | NR | L2 | 13 | 110302006 |
| chr13.21536977.21537596 | rs11841562 | ARR,HD | L2 | LR_open | L2 | 13 | 21537382 |
| chr13.22794559.22794879 | rs9506925 | ARR,HD | OldhAT1 | NR | hAT-Ac | 13 | 22794804 |
| chr13.30740138.30740672 | rs3885907 | ACresp | MIR | LR_open | MIR | 13 | 30740318 |
| chr14.58326948.58327320 | rs2145598 | HD,CAD | MER3 | NR | hAT-Charlie | 14 | 58327283 |
| chr15.70171390.70172398 | rs2415081 | ARR,HD | MIRb | NR | MIR | 15 | 70171653 |
| chr15.90885954.90886257 | rs4932373 | HD,CAD | MIR | LR_close | MIR | 15 | 90886057 |
| chr17.17823556.17824258 | rs12936927 | HD,CAD | (CGCCC)n | ESR_close | Simple_repeat | 17 | 17823651 |
| chr17.2867997.2868307 | rs12603284 | ARR,HD | MamRTE1 | NR | RTE-BovB | 17 | 2868218 |
| chr18.35089781.35090661 | rs476348 | HD | L1MB7 | NR | L1 | 18 | 35090057 |
| chr18.45565618.45565968 | rs2852306 | HD | MIR3 | EAR_close | MIR | 18 | 45565696 |
| chr19.18478653.18479216 | rs11670056 | HD,CAD | MER20 | LR_open | hAT-Charlie | 19 | 18479133 |
| chr19.41352378.41354231 | rs1800470 | HD,CAD | (CAGCAG)n | NR | Simple_repeat | 19 | 41353016 |
| chr2.25936965.25937466 | rs6546620 | ARR,HD | MIRb | NR | MIR | 2 | 25937071 |
| chr2.27262237.27263756 | rs6759518 | ARR,HD,HF,CAD | MIRc | NR | MIR | 2 | 27263727 |
| chr2.36922199.36922493 | rs11124554 | HD,HF | AluJr | NR | Alu | 2 | 36922355 |
| chr2.60391661.60392192 | rs243071 | HD,CAD | MIRb | LR_open | MIR | 2 | 60391893 |
| chr2.86367009.86367615 | rs72926475 | ARR,HD | MIR | ESR_close | MIR | 2 | 86367364 |
| chr21.14118943.14119390 | rs57346421 | HD,HF | HERV1_I-int | NR | ERV1 | 21 | 14119015 |
| chr21.29162621.29163485 | rs73193808 | HD,CAD | AluSz6 | NR | Alu | 21 | 29162981 |
| chr21.34746498.34746999 | rs2834618 | ARR,HD | MIRc | ESR_close | MIR | 21 | 34746814 |
| chr22.38435884.38436418 | rs2267386 | HD | MIR | NR | MIR | 22 | 38436107 |
| chr3.123019226.123019547 | rs7632505 | ARR,HD,HF,CAD | AluJb | NR | Alu | 3 | 123019460 |
| chr3.136350085.136351911 | rs667920 | HD,CAD | L1M4b | NR | L1 | 3 | 136350630 |
| chr3.14216199.14216968 | rs62232870 | HD | MLT1K | NR | ERVL-MaLR | 3 | 14216209 |
| chr3.151483988.151484643 | rs4387942 | HD,CAD | L1PA7 | ESR_close | L1 | 3 | 151484399 |
| chr3.169478628.169479748 | rs2421649 | HD | L2b | NR | L2 | 3 | 169479545 |
| chr3.57959935.57960395 | rs1522387 | HD | MLT1K | NR | ERVL-MaLR | 3 | 57960369 |
| chr4.148015916.148016422 | rs10213171 | ARR,HD | AluJr4 | LR_open | Alu | 4 | 148016386 |
| chr4.168766280.168767270 | rs7696431,rs869396 | HD,CAD | L3 | LR_open | CR1 | 4 | 168766574,168766849 |
| chr4.76495482.76496240 | rs2068063 | HD,MI | L2 | not_mrc | L2 | 4 | 76496050 |
| chr5.115543502.115545233 | rs13177180 | HD | G-rich | NR | Low_complexity | 5 | 115544896 |
| chr5.135458929.135459424 | rs899162 | HD,CAD | L2c | NR | L2 | 5 | 135459219 |
| chr5.138068694.138070268 | rs141654122 | ARR,HD | SVA_D | NR | SVA | 5 | 138070140 |
| chr5.52859657.52860199 | rs73102285 | HD,CAD | L3 | NR | CR1 | 5 | 52859808 |
| chr6.118252411.118253042 | rs281868 | ARR,HD | L2b | LR_open | L2 | 6 | 118252898 |
| chr6.134047673.134047938 | rs965652 | HD,CAD | MamRep1894 | NR | hAT | 6 | 134047815 |
| chr6.28269507.28270003 | rs1225600 | HD,CAD | MLT2B4 | LR_open | ERVL | 6 | 28269667 |
| chr6.39166177.39166915 | rs56336142 | HD,CAD | MIRc | NR | MIR | 6 | 39166323 |
| chr7.100243501.100243833 | rs117038461 | HD,CAD | L1M5 | EAR_close | L1 | 7 | 100243731 |
| chr7.36459124.36459918 | rs192407614 | HD,CAD | LTR38B | EAR_open | ERV1 | 7 | 36459695 |
| chr7.836506.836873 | rs11768850 | ARR,HD | MLT2B4 | NR | ERVL | 7 | 836590 |
| chr7.92620778.92621787 | rs42044 | ARR,HD | AluJb | NR | Alu | 7 | 92620826 |
| chr7.93713592.93714106 | rs376825901 | HD,CAD | Tigger1 | NR | TcMar-Tigger | 7 | 93714028 |
| chr7.99822872.99823551 | rs62471956 | HD,CAD | MER52A | LR_close | ERV1 | 7 | 99823462 |
| chr8.124847104.124848853 | rs35006907,rs34866937 | ARR,HD,HF | MamTip2 | NR | hAT-Tip100 | 8 | 124847575,124847608 |
| chr8.20007264.20008372 | rs2083636,rs894211 | HD,CAD | MER34A,LTR48 | NR | ERV1 | 8 | 20007752,20008236 |
| chr9.107755276.107755816 | rs944172 | HD,CAD | Charlie13a | LR_open | hAT-Charlie | 9 | 107755513 |
| chr9.123933461.123933812 | rs10818894 | ACresp | MLT1J | LR_open | ERVL-MaLR | 9 | 123933491 |
# SNP_df %>% group_by(Peakid) %>%
# summarise(snp_id=paste(unique(SNPS), collapse = ","),
# gwas=paste(unique(gwas),collapse=","),
# repName = paste(unique(repName),collapse=","),
# mrc =paste(unique(mrc),collapse=","),
# repFamily= paste(unique(repFamily),collapse = ","),
# location_chr= paste(unique(CHR_ID),collapse = ";") ,
# location= paste(unique(CHR_POS),collapse = ";") ,
# ) %>%
# write.csv(.,"data/SNP_GWAS_PEAK_MRC_id.csv")
# rtracklayer::export(ESR_open,con = "data/Final_four_data/meme_bed/ESR_open.bed", format="bed", ignore.strand = FALSE)
#
# rtracklayer::export(ESR_close,con = "data/Final_four_data/meme_bed/ESR_close.bed", format="bed", ignore.strand = FALSE)
#
# rtracklayer::export(ESR_OC,con = "data/Final_four_data/meme_bed/ESR_OC.bed", format="bed", ignore.strand = FALSE)
# rtracklayer::export(EAR_open,con = "data/Final_four_data/meme_bed/EAR_open.bed", format="bed", ignore.strand = FALSE)
# rtracklayer::export(EAR_close,con = "data/Final_four_data/meme_bed/EAR_close.bed", format="bed", ignore.strand = FALSE)
#
# rtracklayer::export(LR_open,con = "data/Final_four_data/meme_bed/LR_open.bed", format="bed", ignore.strand = FALSE)
# rtracklayer::export(LR_close,con = "data/Final_four_data/meme_bed/LR_close.bed", format="bed", ignore.strand = FALSE)
#
# rtracklayer::export(NR_df,con = "data/Final_four_data/meme_bed/NR_df.bed", format="bed", ignore.strand = FALSE)SNPanno <-
test2 %>%
as.data.frame() %>%
dplyr::select(Peakid,SNPS,gwas) %>%
mutate(mrc=if_else(Peakid %in% EAR_open$Peakid, "EAR_open",
if_else(Peakid %in% EAR_close$Peakid, "EAR_close",
if_else(Peakid %in% ESR_open$Peakid,"ESR_open",
if_else(Peakid %in% ESR_close$Peakid,"ESR_close",
if_else(Peakid %in% ESR_OC$Peakid,"ESR_OC",
if_else(Peakid %in% LR_open$Peakid,"LR_open",
if_else(Peakid %in% LR_close$Peakid,"LR_close",
if_else(Peakid %in% NR_df$Peakid,"NR","not_mrc"))))))))) %>%
left_join(Col_fullDF_cug_overlap) %>%
mutate(has_cpg= if_else(is.na(name),"not_CpGi","CpGi")) %>%
dplyr::select(Peakid:mrc,has_cpg,name,per_ol) %>%
dplyr::rename("CpG"="has_cpg","cpg_per_ol"="per_ol","CpG_name"="name") %>%
left_join(., Peaks_v_cpgpromo, by=c("Peakid"="Peakid"))%>%
dplyr::select(Peakid:cpg_per_ol,promotor_name) %>%
mutate(CpG_promo=if_else(is.na(promotor_name),"not_CpGpromo","CpGpromo")) %>%
left_join(.,Filter_TE_list, by=c(Peakid="Peakid"))%>%
dplyr::select(SNPS, Peakid,gwas:CpG_promo,repName:repFamily, per_ol) %>%
dplyr::rename("TE_per_ol"="per_ol") %>%
group_by(SNPS) %>%
summarise(Peakid=paste(unique(Peakid), collapse = ","),
gwas=paste(unique(gwas),collapse=","),
mrc=paste(unique(mrc),collapse=","),
CpG=paste(unique(CpG),collapse=","),
CpG_name=paste(unique(CpG_name),collapse=","),
cpg_per_ol=paste(unique(cpg_per_ol),collapse=","),
promotor_name=paste(unique(promotor_name),collapse=","),
CpG_promo=paste(unique(CpG_promo),collapse=","),
repName=paste(unique(repName),collapse=","),
repClass=paste(unique(repClass),collapse=","),
repFamily=paste(unique(repFamily),collapse=","),
TE_per_ol=paste(unique(TE_per_ol),collapse=";"))
# write.csv(SNPanno,"data/Final_four_data/annotated_gwas_SNPS.csv")
SNPanno %>%
kable(., caption = "SNPs and their annotations from my data") %>%
kable_paper("striped", full_width = TRUE) %>%
kable_styling(full_width = FALSE, font_size = 14) %>%
scroll_box(height = "500px")| SNPS | Peakid | gwas | mrc | CpG | CpG_name | cpg_per_ol | promotor_name | CpG_promo | repName | repClass | repFamily | TE_per_ol |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs10083696 | chr15.78830933.78832028 | HD,CAD | LR_open | CpGi | CpG: 122 | 0.692356285533797 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs10083697 | chr15.78830933.78832028 | HD,CAD | LR_open | CpGi | CpG: 122 | 0.692356285533797 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs10121140 | chr9.14292492.14292732 | HD,CAD | not_mrc | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs10213171 | chr4.148015916.148016422 | ARR,HD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | AluJr4 | SINE | Alu | 0.673400673400673 |
| rs10213376 | chr4.148015002.148015341 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | (TCTCCTG)n,MIR3 | Simple_repeat,SINE | Simple_repeat,MIR | 1;0.135714285714286 |
| rs1032763 | chr5.17118580.17119099 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs10456100 | chr6.39214962.39215733 | HD,CAD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIR3 | SINE | MIR | 0.820809248554913 |
| rs1049334 | chr7.116560073.116560553 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs10509768 | chr10.103712814.103713354 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIRb,MIR3 | SINE | MIR | 1;0.0384615384615385 |
| rs1052586 | chr17.46940653.46941215 | HD,MI | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs10734649 | chr11.9758098.9760569 | HD,CAD | NR | CpGi | CpG: 72 | 1 | NA | not_CpGpromo | (GTGGC)n,MIR,GA-rich,L2c | Simple_repeat,SINE,Low_complexity,LINE | Simple_repeat,MIR,Low_complexity,L2 | 1 |
| rs10786662 | chr10.102229686.102230890 | ARR,HD | NR | CpGi | CpG: 141 | 0.268564356435644 | NA | not_CpGpromo | MIR3,(GGC)n,(GCCCGG)n | SINE,Simple_repeat | MIR,Simple_repeat | 1 |
| rs10811650 | chr9.22067279.22067652 | HD,CAD | not_mrc | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs10818576 | chr9.121650071.121650712 | HD,CAD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MER30,MIR3 | DNA,SINE | hAT-Charlie,MIR | 0.256198347107438;1 |
| rs10818579 | chr9.121651049.121653070 | HD,MI | NR | CpGi | CpG: 78 | 1 | EH38E2724036 | CpGpromo | GA-rich,MIRb,L3 | Low_complexity,SINE,LINE | Low_complexity,MIR,CR1 | 1 |
| rs10818894 | chr9.123933461.123933812 | ACresp | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MLT1J | LTR | ERVL-MaLR | 0.698412698412698 |
| rs10821415 | chr9.94950339.94951513 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIRc,MIRb | SINE | MIR | 0.746543778801843;1;0.633484162895928 |
| rs10824026 | chr10.73660865.73661568 | ARR,HD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | AluY,L1MA4A,AluSz | SINE,LINE | Alu,L1 | 0.342948717948718;1;0.164634146341463 |
| rs10871753 | chr18.58289003.58291154 | HD,HF | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | L2a,MLT1I | LINE,LTR | L2,ERVL-MaLR | 1 |
| rs10927886 | chr1.16012567.16013729 | HD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIRb,MIR3,L2b | SINE,LINE | MIR,L2 | 1;0.686567164179104 |
| rs10931898 | chr2.200305915.200307710 | ARR,HD | NR | CpGi | CpG: 150 | 0.954334365325077 | EH38E2065239 | CpGpromo | (GGCG)n,(CGGCCC)n,(CGCCCG)n | Simple_repeat | Simple_repeat | 1 |
| rs11038225 | chr11.44955010.44955513 | HD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MIRb | SINE | MIR | 0.121848739495798 |
| rs11044977 | chr12.20004923.20005338 | HD,MI | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MER85,L2a | DNA,LINE | PiggyBac,L2 | 1 |
| rs11054833 | chr12.12349737.12350701 | HD,CAD | NR | CpGi | CpG: 61 | 1 | EH38E1593399 | CpGpromo | L1ME4b | LINE | L1 | 1 |
| rs11124554 | chr2.36922199.36922493 | HD,HF | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L1MC4,AluJr | LINE,SINE | L1,Alu | 0.0381231671554252;0.842622950819672 |
| rs11180610 | chr12.75646380.75646944 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | Tigger19b | DNA | TcMar-Tigger | 0.802083333333333 |
| rs1122608 | chr19.11052376.11052994 | HD,CAD,MI | NR | not_CpGi | NA | NA | NA | not_CpGpromo | AluJr | SINE | Alu | 0.244897959183673 |
| rs11235604 | chr11.72821745.72822900 | HD,CAD | NR | CpGi | CpG: 111 | 0.847676419965577 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs11242465 | chr5.139426247.139426836 | HD,HF | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | Alu,AluSz6 | SINE | Alu | 1;0.72463768115942 |
| rs112577387 | chr4.22625204.22625843 | HD,HF | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MIRc | SINE | MIR | 0.811188811188811 |
| rs112941079 | chr5.9544368.9546915 | HD,CAD | NR | CpGi | CpG: 138,CpG: 25 | 1 | NA | not_CpGpromo | (GGAGCGG)n,(CCG)n,(GCCCC)n | Simple_repeat | Simple_repeat | 1 |
| rs112941127 | chr2.217868752.217869273 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MIRb | SINE | MIR | 0.220883534136546 |
| rs112949822 | chr5.108747709.108749572 | HD,CAD | NR | CpGi | CpG: 110 | 1 | NA | not_CpGpromo | L2c | LINE | L2 | 1 |
| rs113140904 | chr5.9544368.9546915 | HD,CAD | NR | CpGi | CpG: 138,CpG: 25 | 1 | NA | not_CpGpromo | (GGAGCGG)n,(CCG)n,(GCCCC)n | Simple_repeat | Simple_repeat | 1 |
| rs113452171 | chr7.91784539.91784870 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs113716316 | chr1.27601871.27602613 | HD,CAD,MI | NR | not_CpGi | NA | NA | NA | not_CpGpromo | (CCAGC)n,(TCCCGC)n | Simple_repeat | Simple_repeat | 1 |
| rs113819537 | chr12.26194928.26196665 | ARR,HD,HF | NR | CpGi | CpG: 74 | 1 | EH38E1600228 | CpGpromo | AluJr,(CACC)n,(CTG)n | SINE,Simple_repeat | Alu,Simple_repeat | 0.229452054794521;1 |
| rs113920486 | chr10.52539479.52540028 | HD | ESR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MamGypLTR1d | LTR | Gypsy | 0.175572519083969 |
| rs11398961 | chr15.78830933.78832028 | HD,CAD | LR_open | CpGi | CpG: 122 | 0.692356285533797 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs114192718 | chr2.128027137.128028647 | HD,CAD | NR | CpGi | CpG: 165 | 0.86441647597254 | EH38E2031716,EH38E2031718 | CpGpromo | (CGG)n,(CCGC)n,G-rich | Simple_repeat,Low_complexity | Simple_repeat,Low_complexity | 1;0.780487804878049 |
| rs11465228 | chr5.157575011.157576352 | HD,CAD | NR | CpGi | CpG: 95 | 1 | EH38E2424756 | CpGpromo | MIR3,(AG)n,(T)n | SINE,Simple_repeat | MIR,Simple_repeat | 0.191489361702128;1 |
| rs114782882 | chr12.75895398.75895669 | HD,HF | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs11554495 | chr12.52903311.52905516 | HD | NR | CpGi | CpG: 41 | 1 | NA | not_CpGpromo | MIRb,(CCACC)n,(A)n | SINE,Simple_repeat | MIR,Simple_repeat | 0.311827956989247;1 |
| rs11591147 | chr1.55039222.55040233 | HD,CAD,MI | NR | CpGi | CpG: 85 | 0.88586387434555 | EH38E1349458,EH38E1349459 | CpGpromo | (GCT)n,MIR3 | Simple_repeat,SINE | Simple_repeat,MIR | 1 |
| rs11606719 | chr11.118911506.118912630 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIRb | SINE | MIR | 1 |
| rs11631816 | chr15.73353612.73354309 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs11642015 | chr16.53768577.53768944 | HD,HF | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | UCON8 | DNA | DNA | 1 |
| rs11643207 | chr16.75463626.75465107 | HD | NR | CpGi | CpG: 113 | 1 | EH38E1828262,EH38E1828263,EH38E1828264 | CpGpromo | NA | NA | NA | NA |
| rs11670056 | chr19.18478653.18479216 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MER20 | DNA | hAT-Charlie | 0.552941176470588 |
| rs11677932 | chr2.237315068.237315792 | HD,CAD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs116843064 | chr19.8363631.8364760 | HD,CAD,MI | NR | CpGi | CpG: 52 | 1 | NA | not_CpGpromo | AluSz,(CCCCGAAT)n | SINE,Simple_repeat | Alu,Simple_repeat | 0.869747899159664;1 |
| rs117038461 | chr7.100243501.100243833 | HD,CAD | EAR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIRc,L1M5 | SINE,LINE | MIR,L1 | 0.521276595744681;1 |
| rs11705555 | chr22.27810496.27811281 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | (TGCACA)n | Simple_repeat | Simple_repeat | 0.95 |
| rs11713141 | chr3.138347976.138349043 | HD,CAD | NR | CpGi | CpG: 132 | 0.979225684608121 | EH38E2241845,EH38E2241846 | CpGpromo | NA | NA | NA | NA |
| rs117299725 | chr9.76808694.76808955 | ACtox,ACresp,HD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs11759102 | chr6.19836789.19839260 | HD,CAD | NR | CpGi | CpG: 247 | 0.997826086956522 | EH38E2452004 | CpGpromo | AmnSINE2 | SINE | tRNA-Deu | 1 |
| rs11768850 | chr7.836506.836873 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MLT2B4 | LTR | ERVL | 0.651612903225806 |
| rs11838267 | chr12.7068459.7069322 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIRb | SINE | MIR | 1 |
| rs11838776 | chr13.110387344.110389032 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs11841562 | chr13.21536977.21537596 | ARR,HD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | L2,AluSq2 | LINE,SINE | L2,Alu | 0.176470588235294;1;0.440251572327044 |
| rs12122060 | chr1.170224576.170224916 | ARR,HD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MER53,MIRb,L1MA7 | DNA,SINE,LINE | hAT,MIR,L1 | 0.0173913043478261;1;0.288571428571429 |
| rs12150051 | chr17.12584681.12585327 | HD,CAD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | L1M7 | LINE | L1 | 0.331269349845201 |
| rs12155623 | chr8.48898785.48899940 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | (CA)n | Simple_repeat | Simple_repeat | 0.787037037037037 |
| rs1225600 | chr6.28269507.28270003 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MLT2B4,AluSc8 | LTR,SINE | ERVL,Alu | 0.82565130260521;0.259259259259259 |
| rs12440045 | chr15.41490412.41490650 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs1250258 | chr2.215435176.215436848 | HD,MI | NR | CpGi | CpG: 43 | 1 | EH38E2072836 | CpGpromo | (CCCG)n,G-rich | Simple_repeat,Low_complexity | Simple_repeat,Low_complexity | 1 |
| rs1250259 | chr2.215435176.215436848 | HD,CAD | NR | CpGi | CpG: 43 | 1 | EH38E2072836 | CpGpromo | (CCCG)n,G-rich | Simple_repeat,Low_complexity | Simple_repeat,Low_complexity | 1 |
| rs1250566 | chr10.79286266.79286796 | HD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs12603284 | chr17.2867997.2868307 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MamRTE1 | LINE | RTE-BovB | 1 |
| rs12640611 | chr4.10102598.10102907 | ARR,HD | ESR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MSTD,MIRb | LTR,SINE | ERVL-MaLR,MIR | 0.197707736389685;1 |
| rs12712649 | chr2.39631404.39632344 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MER5A,MLT1O | DNA,LTR | hAT-Charlie,ERVL-MaLR | 1;0.738095238095238 |
| rs12724121 | chr1.236688731.236689166 | HD,HF | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs12740374 | chr1.109274953.109276202 | HD,CAD,MI | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | (TCCTC)n | Simple_repeat | Simple_repeat | 1 |
| rs12893887 | chr14.99644968.99645471 | HD,CAD | NR | CpGi | CpG: 93 | 0.641221374045801 | EH38E1741629,EH38E1741630 | CpGpromo | NA | NA | NA | NA |
| rs12906125 | chr15.90884159.90884726 | HD,MI | not_mrc | CpGi | CpG: 45 | 1 | EH38E1787901 | CpGpromo | G-rich | Low_complexity | Low_complexity | 1 |
| rs12936927 | chr17.17823556.17824258 | HD,CAD | ESR_close | CpGi | CpG: 47 | 0.967213114754098 | NA | not_CpGpromo | (CGCCC)n,MIRb | Simple_repeat,SINE | Simple_repeat,MIR | 1 |
| rs12980942 | chr19.41324959.41326640 | HD,CAD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | (CTCC)n,(CCCTG)n | Simple_repeat | Simple_repeat | 1 |
| rs12983897 | chr19.17747415.17747946 | HD,MI | LR_close | CpGi | CpG: 64 | 0.738461538461539 | EH38E1943617 | CpGpromo | MIRb | SINE | MIR | 0.0130718954248366 |
| rs13176353 | chr5.1800893.1802029 | HD | NR | CpGi | CpG: 185 | 0.367839607201309 | EH38E2353141 | CpGpromo | NA | NA | NA | NA |
| rs13177180 | chr5.115543502.115545233 | HD | NR | CpGi | CpG: 65 | 1 | EH38E2400588 | CpGpromo | G-rich,THE1B | Low_complexity,LTR | Low_complexity,ERVL-MaLR | 1;0.304093567251462 |
| rs1333042 | chr9.22102751.22103879 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIR3,(TG)n | SINE,Simple_repeat | MIR,Simple_repeat | 1 |
| rs13346603 | chr19.41439501.41440141 | HD,HF | NR | CpGi | CpG: 18 | 1 | NA | not_CpGpromo | AluJr | SINE | Alu | 0.148936170212766 |
| rs13402621 | chr2.43231283.43231596 | HD,MI | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs141654122 | chr5.138068694.138070268 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIR3,U6,MamTip2,AluSp,SVA_D | SINE,snRNA,DNA,Retroposon | MIR,snRNA,hAT-Tip100,Alu,SVA | 1;0.177004538577912 |
| rs145306069 | chr1.203795403.203796608 | HD,CAD | NR | CpGi | CpG: 57 | 1 | EH38E1413938 | CpGpromo | NA | NA | NA | NA |
| rs1468498 | chr10.114306394.114306913 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs147288039 | chr9.95006342.95007055 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | AluSc8 | SINE | Alu | 0.516778523489933 |
| rs147631684 | chr16.83599141.83599350 | ACtox,ACresp,HD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MLT1K | LTR | ERVL-MaLR | 0.0246045694200351 |
| rs148241618 | chr18.45879810.45880598 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs148416395 | chr22.46417011.46418228 | HD,HF | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIRc,MIRb,AluSx1 | SINE | MIR,Alu | 1;0.0946372239747634 |
| rs1522387 | chr3.57959935.57960395 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MLT1K | LTR | ERVL-MaLR | 0.677083333333333 |
| rs1522388 | chr3.57959935.57960395 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MLT1K | LTR | ERVL-MaLR | 0.677083333333333 |
| rs1537372 | chr9.22102751.22103879 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIR3,(TG)n | SINE,Simple_repeat | MIR,Simple_repeat | 1 |
| rs1537373 | chr9.22102751.22103879 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIR3,(TG)n | SINE,Simple_repeat | MIR,Simple_repeat | 1 |
| rs16866933 | chr2.179701478.179702086 | ARR,HD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MIR | SINE | MIR | 0.367741935483871 |
| rs170041 | chr17.2266828.2267276 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | AluJb | SINE | Alu | 0.222996515679443 |
| rs17101521 | chr10.121155583.121156319 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L3,LTR16A2 | LINE,LTR | CR1,ERVL | 0.363247863247863;1 |
| rs17118812 | chr5.140322792.140323772 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs17228212 | chr15.67165920.67166678 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | L2b | LINE | L2 | 1 |
| rs17375901 | chr1.11792123.11792871 | ARR,HD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | L2c,MIRc | LINE,SINE | L2,MIR | 0.3625;0.56 |
| rs17458018 | chr2.215420519.215420812 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs175040 | chr14.75002369.75003794 | HD,CAD | NR | CpGi | CpG: 53 | 1 | EH38E1728281 | CpGpromo | NA | NA | NA | NA |
| rs17608766 | chr17.46935408.46936158 | HD,CAD | EAR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs1769758 | chr10.79139073.79139940 | ARR,HD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs17782904 | chr18.44733224.44733992 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs1788826 | chr18.23574050.23574545 | HD,HF | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs1800449 | chr5.122076732.122078641 | HD,CAD | LR_open | CpGi | CpG: 137 | 1 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs1800470 | chr19.41352378.41354231 | HD,CAD | NR | CpGi | CpG: 139 | 1 | EH38E1954757,EH38E1954758 | CpGpromo | (CAGCAG)n,(TCC)n | Simple_repeat | Simple_repeat | 1 |
| rs1800797 | chr7.22726398.22726697 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs1800978 | chr9.104903653.104904005 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs1822273 | chr11.19988504.19989024 | ARR,HD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | AmnSINE1 | SINE | 5S-Deu-L2 | 1 |
| rs190258023 | chr22.46417011.46418228 | HD,HF | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIRc,MIRb,AluSx1 | SINE | MIR,Alu | 1;0.0946372239747634 |
| rs191615952 | chr19.2235309.2237165 | HD,CAD | NR | CpGi | CpG: 157 | 1 | EH38E1932153,EH38E1932154 | CpGpromo | MLT1C,AluJr | LTR,SINE | ERVL-MaLR,Alu | 0.0374149659863946;0.102040816326531 |
| rs192407614 | chr7.36459124.36459918 | HD,CAD | EAR_open | not_CpGi | NA | NA | NA | not_CpGpromo | LTR38B | LTR | ERV1 | 1 |
| rs1926032 | chr10.103069381.103070029 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L1ME3A | LINE | L1 | 0.2 |
| rs1962412 | chr17.48892152.48893499 | HD,CAD | NR | CpGi | CpG: 35 | 1 | EH38E1868507 | CpGpromo | AluSx | SINE | Alu | 0.0487012987012987 |
| rs2052923 | chr2.43184483.43184778 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MIRb,Cheshire | SINE,DNA | MIR,hAT-Charlie | 1;0.100917431192661 |
| rs2068063 | chr4.76495482.76496240 | HD,MI | not_mrc | not_CpGi | NA | NA | NA | not_CpGpromo | LTR16A1,L2 | LTR,LINE | ERVL,L2 | 0.337264150943396;0.889583333333333 |
| rs2071502 | chr17.7510984.7512510 | ARR,HD | ESR_open | not_CpGi | NA | NA | NA | not_CpGpromo | AluSx | SINE | Alu | 0.902654867256637 |
| rs2073533 | chr7.13989380.13991798 | HD,CAD | NR | CpGi | CpG: 18,CpG: 21 | 1 | EH38E2535294 | CpGpromo | (AACA)n | Simple_repeat | Simple_repeat | 1 |
| rs2076380 | chr20.38164364.38165984 | HD | NR | CpGi | CpG: 35 | 1 | EH38E2111384 | CpGpromo | MIRc,(AC)n | SINE,Simple_repeat | MIR,Simple_repeat | 1 |
| rs2083636 | chr8.20007264.20008372 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | LTR32,MER34A,LTR48 | LTR | ERVL,ERV1 | 0.875294117647059;1 |
| rs2099684 | chr1.161530078.161531531 | HD | NR | CpGi | CpG: 32 | 1 | NA | not_CpGpromo | tRNA-Leu-CTG,tRNA-Gly-GGA,(TTCC)n,Charlie5 | tRNA,Simple_repeat,DNA | tRNA,Simple_repeat,hAT-Charlie | 1;0.204301075268817 |
| rs2145274 | chr20.6590860.6591642 | ARR,HD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | Penelope1_Vert | LINE | Penelope | 1 |
| rs2145598 | chr14.58326948.58327320 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L2c,MER3 | LINE,DNA | L2,hAT-Charlie | 0.219123505976096;1 |
| rs216172 | chr17.2222861.2223544 | HD,CAD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs2220127 | chr2.178846382.178846751 | HD,HF | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MIRc | SINE | MIR | 0.38655462184874 |
| rs2220427 | chr4.110793293.110793943 | ARR,HD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs2267386 | chr22.38435884.38436418 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIR | SINE | MIR | 1 |
| rs2269001 | chr7.150954727.150956459 | ARR,HD | ESR_close | CpGi | CpG: 23 | 1 | EH38E2600998 | CpGpromo | NA | NA | NA | NA |
| rs2281727 | chr17.2214040.2216112 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | (AC)n,GA-rich | Simple_repeat,Low_complexity | Simple_repeat,Low_complexity | 1 |
| rs2286466 | chr16.1963596.1965464 | ARR,HD | NR | CpGi | CpG: 122 | 1 | EH38E1796197,EH38E1796198,EH38E1796199 | CpGpromo | AluSx3,(CCCCGG)n,(CTGACCC)n | SINE,Simple_repeat | Alu,Simple_repeat | 0.0114068441064639;1 |
| rs2291437 | chr12.24561685.24562685 | ARR,HD | NR | CpGi | CpG: 92 | 0.495515695067265 | EH38E1599170,EH38E1599171 | CpGpromo | G-rich,(CCACCTC)n,(TG)n,(TCGC)n | Low_complexity,Simple_repeat | Low_complexity,Simple_repeat | 1 |
| rs2306363 | chr11.65637814.65638912 | HD,CAD | NR | CpGi | CpG: 36 | 1 | EH38E1545418 | CpGpromo | MIRb | SINE | MIR | 0.252873563218391 |
| rs2306374 | chr3.138400627.138401136 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs2359171 | chr16.73018778.73020183 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | (GCGTGT)n | Simple_repeat | Simple_repeat | 1 |
| rs2410859 | chr17.75844492.75845572 | HD,CAD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | (GTGGG)n | Simple_repeat | Simple_repeat | 1 |
| rs2415081 | chr15.70171390.70172398 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MER102c,MIRb,MIR3 | DNA,SINE | hAT-Charlie,MIR | 0.788793103448276;1 |
| rs2421649 | chr3.169478628.169479748 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L2b,(A)n | LINE,Simple_repeat | L2,Simple_repeat | 1 |
| rs243071 | chr2.60391661.60392192 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MIRb | SINE | MIR | 1 |
| rs2452600 | chr4.94575665.94576013 | HD,CAD | EAR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs2493298 | chr1.3408398.3409463 | HD,CAD | LR_open | CpGi | CpG: 37 | 1 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs2507 | chr15.73983047.73983757 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | (CCTTC)n | Simple_repeat | Simple_repeat | 1 |
| rs2540949 | chr2.65055695.65057220 | ARR,HD | NR | CpGi | CpG: 132 | 1 | EH38E2004398 | CpGpromo | NA | NA | NA | NA |
| rs2595104 | chr4.110631655.110632575 | ARR,HD | NR | CpGi | CpG: 100 | 0.576480990274094 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs2625322 | chr11.19988504.19989024 | ARR,HD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | AmnSINE1 | SINE | 5S-Deu-L2 | 1 |
| rs2660739 | chr3.78644690.78645022 | HD | not_mrc | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs281868 | chr6.118252411.118253042 | ARR,HD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | L2a,L2b | LINE | L2 | 0.492152466367713;0.26080476900149 |
| rs2834618 | chr21.34746498.34746999 | ARR,HD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | AluSx,MIRc,(CTCC)n | SINE,Simple_repeat | Alu,MIR,Simple_repeat | 0.201320132013201;1;0.526315789473684 |
| rs2852306 | chr18.45565618.45565968 | HD | EAR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIR3 | SINE | MIR | 0.614814814814815 |
| rs295114 | chr2.200330546.200331118 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs3176326 | chr6.36678380.36679788 | ARR,HD,HF | ESR_open | CpGi | CpG: 204 | 0.594777127420081 | EH38E2463466 | CpGpromo | NA | NA | NA | NA |
| rs3213420 | chr16.72008437.72009100 | HD,CAD | LR_close | CpGi | CpG: 50 | 1 | EH38E1826130 | CpGpromo | NA | NA | NA | NA |
| rs326 | chr8.19961869.19963021 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs328 | chr8.19961869.19963021 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs337711 | chr5.114412835.114413212 | ARR,HD | not_mrc | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs34292822 | chr1.154839629.154839995 | ARR,HD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs34774090 | chr19.11142349.11143639 | HD,CAD | EAR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIR1_Amn,G-rich,MER20 | SINE,Low_complexity,DNA | MIR,Low_complexity,hAT-Charlie | 1 |
| rs34866937 | chr8.124847104.124848853 | HD,HF | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MamTip2,AluSx | DNA,SINE | hAT-Tip100,Alu | 1 |
| rs34871776 | chr3.12773796.12774087 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs34969716 | chr6.18209665.18210014 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | AluJr,MER5B | SINE,DNA | Alu,hAT-Charlie | 0.636904761904762;1 |
| rs35006907 | chr8.124847104.124848853 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MamTip2,AluSx | DNA,SINE | hAT-Tip100,Alu | 1 |
| rs35176054 | chr10.103720444.103721025 | ARR,HD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs35267671 | chr1.37931148.37932171 | HD,MI | NR | CpGi | CpG: 53 | 1 | EH38E1338382 | CpGpromo | MIR3 | SINE | MIR | 1 |
| rs35620480 | chr8.11641900.11643102 | ARR,HD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MLT1K,MIRb,(C)n | LTR,SINE,Simple_repeat | ERVL-MaLR,MIR,Simple_repeat | 0.588832487309645;1 |
| rs35946663 | chr14.96362201.96364292 | HD | NR | CpGi | CpG: 101 | 1 | EH38E1739803,EH38E1739804 | CpGpromo | (CGGCTC)n,MIR | Simple_repeat,SINE | Simple_repeat,MIR | 1;0.248780487804878 |
| rs360153 | chr11.9740217.9740734 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs360801 | chr2.62727824.62728333 | HD,MI | NR | not_CpGi | NA | NA | NA | not_CpGpromo | LTR35,L1MB8 | LTR,LINE | ERV1,L1 | 0.886917960088692;0.107569721115538 |
| rs3731748 | chr2.178547784.178549172 | ARR,HD | ESR_OC | not_CpGi | NA | NA | NA | not_CpGpromo | OldhAT1 | DNA | hAT-Ac | 1 |
| rs3734634 | chr6.125789773.125791822 | HD | NR | CpGi | CpG: 107 | 1 | EH38E2500543,EH38E2500544 | CpGpromo | (CCT)n,(CGC)n | Simple_repeat | Simple_repeat | 1 |
| rs376825901 | chr7.93713592.93714106 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | Tigger1 | DNA | TcMar-Tigger | 0.213959285417532 |
| rs3787662 | chr21.29151834.29152614 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L2b | LINE | L2 | 1 |
| rs3803802 | chr17.7718045.7718289 | ARR,HD,HF,CAD | EAR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs3807989 | chr7.116545872.116546373 | ARR,HD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs3809297 | chr12.111171885.111172119 | ARR,HD | not_mrc | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs3813127 | chr18.22457586.22457998 | HD,CAD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIRb | SINE | MIR | 0.418439716312057 |
| rs3814864 | chr14.72893758.72895206 | ARR,HD | NR | CpGi | CpG: 165 | 0.218648018648019 | EH38E1726798,EH38E1726799 | CpGpromo | GA-rich | Low_complexity | Low_complexity | 1 |
| rs3822127 | chr4.173529475.173530537 | ARR,HD | EAR_open | CpGi | CpG: 120 | 0.593113141250878 | EH38E2344608,EH38E2344610 | CpGpromo | (CCGGCT)n,(CCCTC)n | Simple_repeat | Simple_repeat | 1 |
| rs3822259 | chr4.10115366.10117581 | ARR,HD | NR | CpGi | CpG: 136 | 1 | EH38E2280769,EH38E2280771,EH38E2280772 | CpGpromo | MIRc,5S,(GGCAG)n,G-rich,(CCGGCC)n | SINE,rRNA,Simple_repeat,Low_complexity | MIR,rRNA,Simple_repeat,Low_complexity | 1 |
| rs3853445 | chr4.110840197.110840561 | ARR,HD | not_mrc | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs3885907 | chr13.30740138.30740672 | ACresp | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | L3,MIR,(TC)n,L2 | LINE,SINE,Simple_repeat | CR1,MIR,Simple_repeat,L2 | 0.385869565217391;1;0.27319587628866 |
| rs3895874 | chr17.48970223.48970597 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs3904323 | chr13.22794559.22794879 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | OldhAT1 | DNA | hAT-Ac | 1 |
| rs42044 | chr7.92620778.92621787 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | AluJb,MamRTE1 | SINE,LINE | Alu,RTE-BovB | 0.506802721088435;0.298449612403101 |
| rs4234323 | chr3.151479569.151479846 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs4234324 | chr3.151479569.151479846 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs4387942 | chr3.151483988.151484643 | HD,CAD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | L1PA7 | LINE | L1 | 0.101516558341071 |
| rs472109 | chr11.9748359.9748943 | HD,CAD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | LTR41,MIRb | LTR,SINE | ERVL,MIR | 0.61864406779661;1;0.703703703703704 |
| rs472495 | chr1.55055575.55055793 | HD,CAD | not_mrc | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs4757877 | chr11.19988504.19989024 | ARR,HD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | AmnSINE1 | SINE | 5S-Deu-L2 | 1 |
| rs476348 | chr18.35089781.35090661 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L1MB7,L1MA6,AluSx1 | LINE,SINE | L1,Alu | 0.478102189781022;1;0.67948717948718 |
| rs4773140 | chr13.110301444.110302036 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L2 | LINE | L2 | 0.210682492581602 |
| rs4773141 | chr13.110301444.110302036 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L2 | LINE | L2 | 0.210682492581602 |
| rs4773144 | chr13.110305804.110309074 | HD,CAD | NR | CpGi | CpG: 178,CpG: 19 | 1 | EH38E1697729,EH38E1697730 | CpGpromo | (AAGAAC)n,(GGC)n | Simple_repeat | Simple_repeat | 1 |
| rs4871397 | chr8.123622558.123623378 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs4894803 | chr3.172082306.172082889 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIR3 | SINE | MIR | 1 |
| rs4896104 | chr6.134797479.134798124 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs4932373 | chr15.90885954.90886257 | HD,CAD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIR,MER58A | SINE,DNA | MIR,hAT-Charlie | 1;0.0588235294117647 |
| rs494207 | chr10.44245450.44245918 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L1MB2 | LINE | L1 | 0.566343042071197 |
| rs4951261 | chr1.205748526.205750556 | ARR,HD | NR | CpGi | CpG: 100 | 1 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs4977575 | chr9.22124697.22124840 | HD,CAD | not_mrc | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs4999127 | chr1.154741375.154741854 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs518594 | chr10.44261009.44262169 | HD,CAD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs523297 | chr10.44261009.44262169 | HD,CAD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs534128177 | chr11.90455310.90455981 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L1PA16,LTR14B | LINE,LTR | L1,ERVK | 0.0403825717321998;1;0.10625 |
| rs55734480 | chr7.14331921.14332483 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | (GTTT)n,MIR,MER113 | Simple_repeat,SINE,DNA | Simple_repeat,MIR,hAT-Charlie | 1;0.00966183574879227 |
| rs56210063 | chr11.8767540.8768078 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L2a,L3 | LINE | L2,CR1 | 0.422077922077922;1 |
| rs56281979 | chr3.14232390.14233136 | HD,HF | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIR3,L3,AluSz6 | SINE,LINE | MIR,CR1,Alu | 0.72;1;0.130281690140845 |
| rs56336142 | chr6.39166177.39166915 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIRc | SINE | MIR | 1 |
| rs564427867 | chr1.55039222.55040233 | HD,CAD | NR | CpGi | CpG: 85 | 0.88586387434555 | EH38E1349458,EH38E1349459 | CpGpromo | (GCT)n,MIR3 | Simple_repeat,SINE | Simple_repeat,MIR | 1 |
| rs57346421 | chr21.14118943.14119390 | HD,HF | NR | not_CpGi | NA | NA | NA | not_CpGpromo | HERV1_I-int | LTR | ERV1 | 0.0510483135824977 |
| rs582384 | chr2.45668749.45669787 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MIRc,L1M5,AluSx1 | SINE,LINE | MIR,L1,Alu | 0.260869565217391;1;0.196013289036545 |
| rs585967 | chr2.21047256.21047719 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | (CA)n | Simple_repeat | Simple_repeat | 1 |
| rs5867305 | chr5.36156365.36157193 | HD,CAD | EAR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MER5A,MER112 | DNA | hAT-Charlie | 1 |
| rs587606498 | chr1.121213617.121213779 | HD,HF | not_mrc | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs588136 | chr15.58437614.58438322 | HD,CAD | not_mrc | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs590121 | chr11.75561990.75564409 | HD,CAD | NR | CpGi | CpG: 53 | 0.873873873873874 | EH38E1553275 | CpGpromo | G-rich | Low_complexity | Low_complexity | 1 |
| rs60280851 | chr15.68666479.68666914 | HD | not_mrc | not_CpGi | NA | NA | NA | not_CpGpromo | 5S | rRNA | rRNA | 1 |
| rs604723 | chr11.100739719.100740030 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs62042066 | chr16.86664502.86665119 | HD,MI | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | AmnSINE1,LTR16A2 | SINE,LTR | 5S-Deu-L2,ERVL | 1 |
| rs62139062 | chr2.65271531.65272160 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | AluSp | SINE | Alu | 0.385665529010239 |
| rs62232870 | chr3.14216199.14216968 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MLT1K,MER117,MIRb | LTR,DNA,SINE | ERVL-MaLR,hAT-Charlie,MIR | 0.767313019390582;1;0.248587570621469 |
| rs62471956 | chr7.99822872.99823551 | HD,CAD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MER52A | LTR | ERV1 | 0.416922133660331 |
| rs62568141 | chr9.77011996.77012519 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs629301 | chr1.109274953.109276202 | ARR,HD,HF,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | (TCCTC)n | Simple_repeat | Simple_repeat | 1 |
| rs6426551 | chr1.226353539.226354600 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | LTR78,Charlie4z,MLT1L | LTR,DNA | ERV1,hAT-Charlie,ERVL-MaLR | 0.652284263959391;1;0.0392156862745098 |
| rs646776 | chr1.109274953.109276202 | HD,CAD,MI | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | (TCCTC)n | Simple_repeat | Simple_repeat | 1 |
| rs653178 | chr12.111569574.111570394 | HD,MI | NR | not_CpGi | NA | NA | NA | not_CpGpromo | AluJb,(CAC)n,MER3,L3,L1MC5 | SINE,Simple_repeat,DNA,LINE | Alu,Simple_repeat,hAT-Charlie,CR1,L1 | 0.534798534798535;1;0.768707482993197 |
| rs6542647 | chr2.4898614.4899128 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L1PB3,MER113B | LINE,DNA | L1,hAT-Charlie | 0.0321543408360129;1 |
| rs6546620 | chr2.25936965.25937466 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIRb,(GGCAGT)n | SINE,Simple_repeat | MIR,Simple_repeat | 0.691176470588235;0.0487804878048781 |
| rs6597292 | chr6.7974642.7975583 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs6598541 | chr15.98727491.98728563 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | (T)n,LTR12F | Simple_repeat,LTR | Simple_repeat,ERV1 | 1 |
| rs660240 | chr1.109274953.109276202 | HD,HF,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | (TCCTC)n | Simple_repeat | Simple_repeat | 1 |
| rs667920 | chr3.136350085.136351911 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | AluSz,L1M4b,L1MA9,L1M4a2 | SINE,LINE | Alu,L1 | 0.25;1;0.300291545189504 |
| rs6702619 | chr1.99580395.99580980 | HD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs672149 | chr11.128759383.128760154 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L2 | LINE | L2 | 0.927433628318584 |
| rs6730157 | chr2.135149084.135149706 | ARR,HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIR,AluY | SINE | MIR,Alu | 1;0.152542372881356 |
| rs6759518 | chr2.27262237.27263756 | ARR,HD,HF,CAD | NR | CpGi | CpG: 257 | 0.479192938209332 | EH38E1982668 | CpGpromo | MIRc | SINE | MIR | 0.84297520661157 |
| rs6801957 | chr3.38725644.38726351 | ARR,HD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIRb | SINE | MIR | 0.15668202764977 |
| rs6807275 | chr3.14232390.14233136 | HD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIR3,L3,AluSz6 | SINE,LINE | MIR,CR1,Alu | 0.72;1;0.130281690140845 |
| rs6909752 | chr6.22612314.22612576 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs6982502 | chr8.125466567.125467336 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7090277 | chr10.12234804.12236216 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | AluSp,MER117 | SINE,DNA | Alu,hAT-Charlie | 0.678787878787879;1 |
| rs7115242 | chr11.117037235.117037719 | ARR,HD,HF,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7157599 | chr14.100158874.100160055 | ARR,HD | NR | CpGi | CpG: 131 | 0.939579684763573 | EH38E1742143 | CpGpromo | G-rich | Low_complexity | Low_complexity | 1 |
| rs7165042 | chr15.78830933.78832028 | HD,CAD,MI | LR_open | CpGi | CpG: 122 | 0.692356285533797 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7165081 | chr15.78830933.78832028 | HD,CAD | LR_open | CpGi | CpG: 122 | 0.692356285533797 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7165733 | chr15.78830933.78832028 | HD,CAD | LR_open | CpGi | CpG: 122 | 0.692356285533797 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7166764 | chr15.78830933.78832028 | HD,CAD | LR_open | CpGi | CpG: 122 | 0.692356285533797 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7172038 | chr15.73374622.73375198 | ARR,HD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7178084 | chr15.73375634.73376745 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L2c,(CAAGCCC)n | LINE,Simple_repeat | L2,Simple_repeat | 1 |
| rs7181432 | chr15.78830933.78832028 | HD,CAD | LR_open | CpGi | CpG: 122 | 0.692356285533797 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7182103 | chr15.78830933.78832028 | HD,CAD | LR_open | CpGi | CpG: 122 | 0.692356285533797 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7182529 | chr15.78830933.78832028 | HD,CAD | LR_open | CpGi | CpG: 122 | 0.692356285533797 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7182716 | chr15.78830933.78832028 | HD,CAD | LR_open | CpGi | CpG: 122 | 0.692356285533797 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7183206 | chr15.73375634.73376745 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L2c,(CAAGCCC)n | LINE,Simple_repeat | L2,Simple_repeat | 1 |
| rs7189462 | chr16.81873989.81874357 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MER102a | DNA | hAT-Charlie | 1 |
| rs7197197 | chr16.72877300.72877905 | ARR,HD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | (TGT)n | Simple_repeat | Simple_repeat | 1 |
| rs7234864 | chr18.60067561.60068151 | HD,HF | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | L2c | LINE | L2 | 0.0103092783505155 |
| rs7246865 | chr19.17107804.17108454 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MLT1C,MER20 | LTR,DNA | ERVL-MaLR,hAT-Charlie | 0.321867321867322;0.541666666666667 |
| rs72654473 | chr19.44911105.44911471 | HD,CAD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIRc | SINE | MIR | 0.393939393939394 |
| rs72658867 | chr19.11119936.11120563 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | AluSq,(AAAC)n | SINE,Simple_repeat | Alu,Simple_repeat | 0.135231316725979;1 |
| rs72664335 | chr1.56521199.56521723 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | AluSz6,(TG)n,FLAM_C,(CTCC)n | SINE,Simple_repeat | Alu,Simple_repeat | 0.205787781350482;1;0.219178082191781 |
| rs72671655 | chr8.105335411.105336052 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs72700114 | chr1.170224576.170224916 | ARR,HD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MER53,MIRb,L1MA7 | DNA,SINE,LINE | hAT,MIR,L1 | 0.0173913043478261;1;0.288571428571429 |
| rs72926475 | chr2.86367009.86367615 | ARR,HD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIR | SINE | MIR | 0.407608695652174;1 |
| rs72935945 | chr6.110334421.110335161 | HD,CAD | ESR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs729743 | chr17.80795708.80796334 | HD,CAD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | THE1D,MLT2A2 | LTR | ERVL-MaLR,ERVL | 1 |
| rs73045269 | chr19.41318885.41319481 | HD,CAD | ESR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs73102285 | chr5.52859657.52860199 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L3 | LINE | CR1 | 0.763713080168776 |
| rs73123536 | chr4.22630084.22630437 | HD,HF | not_mrc | not_CpGi | NA | NA | NA | not_CpGpromo | MIRc | SINE | MIR | 0.32258064516129 |
| rs73193808 | chr21.29162621.29163485 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | AluSq2,AluSz6 | SINE | Alu | 0.263333333333333;1 |
| rs7333991 | chr13.110455785.110456535 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs733701 | chr6.39203639.39204133 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MER5B | DNA | hAT-Charlie | 1 |
| rs7403708 | chr15.78830933.78832028 | HD,CAD | LR_open | CpGi | CpG: 122 | 0.692356285533797 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs74181299 | chr2.65055695.65057220 | ARR,HD | NR | CpGi | CpG: 132 | 1 | EH38E2004398 | CpGpromo | NA | NA | NA | NA |
| rs7433206 | chr3.38615932.38616880 | HD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7440763 | chr4.155512047.155512545 | HD,CAD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | Charlie4z | DNA | hAT-Charlie | 0.42483660130719 |
| rs7486169 | chr12.74338024.74338393 | HD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs75112503 | chr11.110366109.110367343 | HD,MI | NR | not_CpGi | NA | NA | NA | not_CpGpromo | AluY,L1MB3,L2b,AluSx | SINE,LINE | Alu,L1,L2 | 0.277227722772277;1;0.598425196850394 |
| rs75190942 | chr11.128894447.128895096 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7529220 | chr1.21955557.21956277 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIRb | SINE | MIR | 1 |
| rs75524776 | chr12.109538192.109538640 | HD,CAD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MIRb | SINE | MIR | 1 |
| rs7568458 | chr2.85560977.85561973 | HD,CAD | NR | CpGi | CpG: 37 | 1 | EH38E2013886 | CpGpromo | AluJr | SINE | Alu | 0.0138888888888889 |
| rs7580831 | chr2.237310830.237311051 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs759098931 | chr14.99644968.99645471 | HD,CAD | NR | CpGi | CpG: 93 | 0.641221374045801 | EH38E1741629,EH38E1741630 | CpGpromo | NA | NA | NA | NA |
| rs7604403 | chr2.111897773.111899676 | HD,CAD | NR | CpGi | CpG: 137 | 1 | EH38E2024982 | CpGpromo | AluSc | SINE | Alu | 0.533783783783784 |
| rs76064792 | chr16.719886.721785 | HD,HF | LR_close | CpGi | CpG: 169 | 0.757477243172952 | EH38E1795024,EH38E1795025 | CpGpromo | (GCAGG)n | Simple_repeat | Simple_repeat | 1 |
| rs76097649 | chr11.128894447.128895096 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7612445 | chr3.179454943.179455262 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7617480 | chr3.49173142.49174143 | HD,HF | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | (CCATCT)n | Simple_repeat | Simple_repeat | 1 |
| rs7617773 | chr3.48151277.48152429 | HD,CAD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MamTip1 | DNA | hAT-Tip100 | 1 |
| rs7632505 | chr3.123019226.123019547 | ARR,HD,HF,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIR,AluJb | SINE | MIR,Alu | 0.771929824561403;0.829787234042553 |
| rs7633770 | chr3.46646587.46647198 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MER74A | LTR | ERVL | 0.641025641025641 |
| rs76600480 | chr7.128909544.128910271 | HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L2 | LINE | L2 | 0.1875 |
| rs7690530 | chr4.40629425.40630609 | HD,CAD | NR | CpGi | CpG: 66 | 1 | EH38E2292822 | CpGpromo | G-rich | Low_complexity | Low_complexity | 1 |
| rs7696431 | chr4.168766280.168767270 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MER41A,L3,MIRc | LTR,LINE,SINE | ERV1,CR1,MIR | 0.842105263157895;1;0.883018867924528 |
| rs77316573 | chr16.2214289.2215681 | ARR,HD | LR_close | CpGi | CpG: 162 | 0.75131926121372 | NA | not_CpGpromo | (CCG)n,L1ME3,AluY | Simple_repeat,LINE,SINE | Simple_repeat,L1,Alu | 1;0.205787781350482 |
| rs7873551 | chr9.116482574.116483181 | HD,CAD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs7910227 | chr10.20953148.20953475 | ARR,HD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MLT1B | LTR | ERVL-MaLR | 0.824120603015075 |
| rs7947761 | chr11.100753128.100753902 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L1PBa | LINE | L1 | 0.395206527281999 |
| rs79661299 | chr6.42087754.42088697 | HD,HF | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MIRb,AluSc | SINE | MIR,Alu | 0.706666666666667;1 |
| rs79717953 | chr6.73694726.73695115 | HD,CAD,MI | EAR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MER5A1 | DNA | hAT-Charlie | 0.264367816091954 |
| rs7977247 | chr12.106865628.106866040 | HD,HF | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | L2a | LINE | L2 | 0.568870523415978 |
| rs79825511 | chr11.69700398.69700987 | HD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | MER113B,(CCAGG)n | DNA,Simple_repeat | hAT-Charlie,Simple_repeat | 0.713235294117647;1 |
| rs8003602 | chr14.99682572.99684938 | HD,CAD | NR | CpGi | CpG: 127 | 1 | EH38E1741669,EH38E1741670 | CpGpromo | MER50,MamGypLTR3,MamGypLTR2b,(CCCGG)n,G-rich,MIR | LTR,Simple_repeat,Low_complexity,SINE | ERV1,Gypsy,Simple_repeat,Low_complexity,MIR | 0.0142857142857143;1 |
| rs8096658 | chr18.79396485.79396813 | ARR,HD | NR | CpGi | CpG: 544 | 0.0474336793540946 | NA | not_CpGpromo | NA | NA | NA | NA |
| rs869396 | chr4.168766280.168767270 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | MER41A,L3,MIRc | LTR,LINE,SINE | ERV1,CR1,MIR | 0.842105263157895;1;0.883018867924528 |
| rs880315 | chr1.10736684.10737808 | ARR,HD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | L2c | LINE | L2 | 0.931034482758621;1 |
| rs894211 | chr8.20007264.20008372 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | LTR32,MER34A,LTR48 | LTR | ERVL,ERV1 | 0.875294117647059;1 |
| rs899162 | chr5.135458929.135459424 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L2c | LINE | L2 | 1 |
| rs899997 | chr15.78726891.78727425 | HD,CAD | ESR_close | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
| rs9388813 | chr6.130602114.130602839 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MamSINE1 | SINE | tRNA-RTE | 1 |
| rs944172 | chr9.107755276.107755816 | HD,CAD | LR_open | not_CpGi | NA | NA | NA | not_CpGpromo | Charlie13a,MLT2C1 | DNA,LTR | hAT-Charlie,ERVL | 0.71658615136876;0.307420494699647 |
| rs9469890 | chr6.34796116.34796383 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | L2a | LINE | L2 | 0.528089887640449 |
| rs9506925 | chr13.22794559.22794879 | ARR,HD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | OldhAT1 | DNA | hAT-Ac | 1 |
| rs9556903 | chr13.98207008.98208056 | HD,CAD | LR_close | not_CpGi | NA | NA | NA | not_CpGpromo | (CA)n | Simple_repeat | Simple_repeat | 1 |
| rs965652 | chr6.134047673.134047938 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | MamRep1894 | DNA | hAT | 1 |
| rs9899183 | chr17.7548665.7550717 | ARR,HD | NR | CpGi | CpG: 50 | 1 | EH38E1844469 | CpGpromo | MER21A,G-rich,MIRc,MER94 | LTR,Low_complexity,SINE,DNA | ERVL,Low_complexity,MIR,hAT-Blackjack | 0.748815165876777;1 |
| rs9906944 | chr17.49012959.49014932 | HD,CAD | NR | CpGi | CpG: 48,CpG: 18 | 1 | EH38E1868609 | CpGpromo | MIRc | SINE | MIR | 1 |
| rs9912587 | chr17.43021036.43021565 | HD,CAD | NR | not_CpGi | NA | NA | NA | not_CpGpromo | NA | NA | NA | NA |
## full peak set as all peaks
subsetall_df Peakid repName repClass repClass_org
1 chr1.180766.180946 (ACCCTA)n Other Simple_repeat
2 chr1.181330.181576 TAR1 Other Satellite
3 chr1.191314.191869 <NA> <NA> <NA>
4 chr1.267952.268047 <NA> <NA> <NA>
5 chr1.629906.629985 <NA> <NA> <NA>
6 chr1.633083.633560 <NA> <NA> <NA>
7 chr1.633980.634076 <NA> <NA> <NA>
8 chr1.778372.779265 FRAM SINE SINE
9 chr1.821114.821757 <NA> <NA> <NA>
10 chr1.826694.827783 G-rich Other Low_complexity
11 chr1.831387.831615 <NA> <NA> <NA>
12 chr1.832234.832467 <NA> <NA> <NA>
13 chr1.865730.866534 MLT1B LTR LTR
14 chr1.869659.870171 MIRb SINE SINE
15 chr1.876264.877232 <NA> <NA> <NA>
16 chr1.904462.904943 <NA> <NA> <NA>
17 chr1.906836.907104 <NA> <NA> <NA>
18 chr1.910373.911600 <NA> <NA> <NA>
19 chr1.920872.921733 <NA> <NA> <NA>
20 chr1.923524.924105 (AGCCC)n Other Simple_repeat
21 chr1.923524.924105 (GGC)n Other Simple_repeat
22 chr1.924253.925000 (GGCCCT)n Other Simple_repeat
23 chr1.935585.936101 <NA> <NA> <NA>
24 chr1.938056.938631 <NA> <NA> <NA>
25 chr1.940336.941227 <NA> <NA> <NA>
26 chr1.941303.942010 (CCG)n Other Simple_repeat
27 chr1.951331.951700 <NA> <NA> <NA>
28 chr1.958864.959581 (CCGCC)n Other Simple_repeat
29 chr1.960492.960762 (GCCCGGA)n Other Simple_repeat
30 chr1.961274.961703 <NA> <NA> <NA>
31 chr1.966173.967330 (GCGGG)n Other Simple_repeat
32 chr1.975926.976584 (CCAC)n Other Simple_repeat
33 chr1.979686.980042 <NA> <NA> <NA>
34 chr1.983936.984542 <NA> <NA> <NA>
35 chr1.998987.1000942 (CCCCCG)n Other Simple_repeat
36 chr1.998987.1000942 G-rich Other Low_complexity
37 chr1.998987.1000942 G-rich Other Low_complexity
38 chr1.998987.1000942 (GGCCG)n Other Simple_repeat
39 chr1.1001752.1002056 <NA> <NA> <NA>
40 chr1.1005022.1005735 (CTCCCCC)n Other Simple_repeat
41 chr1.1005022.1005735 MLT1H LTR LTR
42 chr1.1012993.1014466 AluJb SINE SINE
43 chr1.1019222.1019800 AluJr4 SINE SINE
44 chr1.1019222.1019800 G-rich Other Low_complexity
45 chr1.1019222.1019800 G-rich Other Low_complexity
46 chr1.1020091.1020770 (CCCC)n Other Simple_repeat
47 chr1.1020091.1020770 (GCCCC)n Other Simple_repeat
48 chr1.1020091.1020770 (CGC)n Other Simple_repeat
49 chr1.1020091.1020770 G-rich Other Low_complexity
50 chr1.1020798.1021734 <NA> <NA> <NA>
51 chr1.1024609.1025344 (GCCAGG)n Other Simple_repeat
52 chr1.1032047.1033515 (GCACAC)n Other Simple_repeat
53 chr1.1032047.1033515 (CCAGCC)n Other Simple_repeat
54 chr1.1040421.1040970 G-rich Other Low_complexity
55 chr1.1042221.1042721 <NA> <NA> <NA>
56 chr1.1044510.1044915 <NA> <NA> <NA>
57 chr1.1050794.1051096 (CTCTGCT)n Other Simple_repeat
58 chr1.1059017.1059993 GA-rich Other Low_complexity
59 chr1.1059017.1059993 (GCCCC)n Other Simple_repeat
60 chr1.1063729.1064442 (CCTGG)n Other Simple_repeat
61 chr1.1069144.1069625 <NA> <NA> <NA>
62 chr1.1074089.1075165 GA-rich Other Low_complexity
63 chr1.1079426.1080626 (CCCCG)n Other Simple_repeat
64 chr1.1086553.1086898 <NA> <NA> <NA>
65 chr1.1115826.1116844 (CCCCAGC)n Other Simple_repeat
66 chr1.1115826.1116844 G-rich Other Low_complexity
67 chr1.1115826.1116844 (AGGCGG)n Other Simple_repeat
68 chr1.1121843.1122546 <NA> <NA> <NA>
69 chr1.1122855.1123828 <NA> <NA> <NA>
70 chr1.1157422.1158357 (CCATCCCCG)n Other Simple_repeat
71 chr1.1157422.1158357 (CAGCC)n Other Simple_repeat
72 chr1.1201351.1201790 <NA> <NA> <NA>
73 chr1.1206497.1206728 <NA> <NA> <NA>
74 chr1.1217914.1218541 <NA> <NA> <NA>
75 chr1.1222461.1223410 (CAGGCC)n Other Simple_repeat
76 chr1.1231222.1232501 MIRb SINE SINE
77 chr1.1231222.1232501 (GCG)n Other Simple_repeat
78 chr1.1231222.1232501 (CCGCGC)n Other Simple_repeat
79 chr1.1258653.1259599 L2 LINE LINE
80 chr1.1258653.1259599 MER54A LTR LTR
81 chr1.1264810.1265699 AluSx SINE SINE
82 chr1.1264810.1265699 MER68 LTR LTR
83 chr1.1264810.1265699 (GT)n Other Simple_repeat
84 chr1.1264810.1265699 AluSg SINE SINE
85 chr1.1272606.1275183 (CCTG)n Other Simple_repeat
86 chr1.1272606.1275183 (CCG)n Other Simple_repeat
87 chr1.1272606.1275183 G-rich Other Low_complexity
88 chr1.1272606.1275183 G-rich Other Low_complexity
89 chr1.1281619.1282373 MIRb SINE SINE
90 chr1.1284477.1285871 <NA> <NA> <NA>
91 chr1.1290218.1290492 <NA> <NA> <NA>
92 chr1.1291645.1292246 <NA> <NA> <NA>
93 chr1.1295013.1296217 <NA> <NA> <NA>
94 chr1.1299020.1299381 <NA> <NA> <NA>
95 chr1.1304757.1305110 G-rich Other Low_complexity
96 chr1.1307243.1309120 (CCGGC)n Other Simple_repeat
97 chr1.1307243.1309120 (GGC)n Other Simple_repeat
98 chr1.1307243.1309120 (GGGCGC)n Other Simple_repeat
99 chr1.1307243.1309120 (G)n Other Simple_repeat
100 chr1.1307243.1309120 (GGCG)n Other Simple_repeat
101 chr1.1318139.1318563 AluY SINE SINE
102 chr1.1318139.1318563 L1MEg LINE LINE
103 chr1.1318139.1318563 AluJb SINE SINE
104 chr1.1324254.1325470 <NA> <NA> <NA>
105 chr1.1340206.1340601 <NA> <NA> <NA>
106 chr1.1347756.1348412 (ACTGGTG)n Other Simple_repeat
107 chr1.1348700.1349993 (GGCGC)n Other Simple_repeat
108 chr1.1348700.1349993 (CGCCC)n Other Simple_repeat
109 chr1.1348700.1349993 G-rich Other Low_complexity
110 chr1.1359695.1361211 (CA)n Other Simple_repeat
111 chr1.1362084.1362269 <NA> <NA> <NA>
112 chr1.1371659.1372320 MER20 DNA DNA
113 chr1.1374485.1375649 (GCCCGGC)n Other Simple_repeat
114 chr1.1398666.1400657 G-rich Other Low_complexity
115 chr1.1398666.1400657 (CGC)n Other Simple_repeat
116 chr1.1406544.1408077 G-rich Other Low_complexity
117 chr1.1406544.1408077 G-rich Other Low_complexity
118 chr1.1406544.1408077 AluYh9 SINE SINE
119 chr1.1406544.1408077 AluSx3 SINE SINE
120 chr1.1406544.1408077 AluJb SINE SINE
121 chr1.1419325.1419926 <NA> <NA> <NA>
122 chr1.1425850.1426618 (GGAGCT)n Other Simple_repeat
123 chr1.1425850.1426618 GA-rich Other Low_complexity
124 chr1.1431779.1432224 <NA> <NA> <NA>
125 chr1.1433239.1434184 <NA> <NA> <NA>
126 chr1.1435372.1435855 (GTGC)n Other Simple_repeat
127 chr1.1435372.1435855 G-rich Other Low_complexity
128 chr1.1435372.1435855 (CGAG)n Other Simple_repeat
129 chr1.1440773.1441353 <NA> <NA> <NA>
130 chr1.1461959.1462874 <NA> <NA> <NA>
131 chr1.1470950.1471970 LTR7 LTR LTR
132 chr1.1470950.1471970 LTR10A LTR LTR
133 chr1.1470950.1471970 (CCCCGCC)n Other Simple_repeat
134 chr1.1470950.1471970 (CGG)n Other Simple_repeat
135 chr1.1478318.1478636 <NA> <NA> <NA>
136 chr1.1479180.1480138 <NA> <NA> <NA>
137 chr1.1481813.1482116 <NA> <NA> <NA>
138 chr1.1504730.1505728 (GT)n Other Simple_repeat
139 chr1.1504730.1505728 LTR13 LTR LTR
140 chr1.1511450.1512402 (CGG)n Other Simple_repeat
141 chr1.1533392.1533942 <NA> <NA> <NA>
142 chr1.1535548.1536277 <NA> <NA> <NA>
143 chr1.1536431.1537029 L2 LINE LINE
144 chr1.1537912.1538606 <NA> <NA> <NA>
145 chr1.1539330.1539910 <NA> <NA> <NA>
146 chr1.1540541.1541018 (CGCCC)n Other Simple_repeat
147 chr1.1540541.1541018 (GCTCG)n Other Simple_repeat
148 chr1.1540541.1541018 (CCT)n Other Simple_repeat
149 chr1.1550842.1551382 (CACC)n Other Simple_repeat
150 chr1.1554541.1555504 <NA> <NA> <NA>
151 chr1.1574091.1575470 (GCC)n Other Simple_repeat
152 chr1.1574091.1575470 (GGC)n Other Simple_repeat
153 chr1.1574091.1575470 L2 LINE LINE
154 chr1.1597416.1597928 (CTCCCC)n Other Simple_repeat
155 chr1.1599593.1599890 (GC)n Other Simple_repeat
156 chr1.1614287.1614554 MER65D LTR LTR
157 chr1.1614979.1616795 AluSg SINE SINE
158 chr1.1614979.1616795 G-rich Other Low_complexity
159 chr1.1614979.1616795 (CCGTGC)n Other Simple_repeat
160 chr1.1624923.1626509 G-rich Other Low_complexity
161 chr1.1628477.1629294 <NA> <NA> <NA>
162 chr1.1631655.1632530 (CCCCCT)n Other Simple_repeat
163 chr1.1631655.1632530 (CCCAGGC)n Other Simple_repeat
164 chr1.1636438.1637810 <NA> <NA> <NA>
165 chr1.1658721.1659455 (CGC)n Other Simple_repeat
166 chr1.1665018.1666106 (GGCCTCAG)n Other Simple_repeat
167 chr1.1678465.1679123 <NA> <NA> <NA>
168 chr1.1680992.1681250 AluY SINE SINE
169 chr1.1692349.1693265 (GCACCCA)n Other Simple_repeat
170 chr1.1724039.1724764 <NA> <NA> <NA>
171 chr1.1745649.1746732 (GCACCCA)n Other Simple_repeat
172 chr1.1745649.1746732 (T)n Other Simple_repeat
173 chr1.1760576.1760840 AluJb SINE SINE
174 chr1.1777623.1779345 G-rich Other Low_complexity
175 chr1.1788988.1789349 <NA> <NA> <NA>
176 chr1.1796843.1797274 L1ME3G LINE LINE
177 chr1.1799533.1800033 L1MEf LINE LINE
178 chr1.1827153.1827708 <NA> <NA> <NA>
179 chr1.1832980.1833136 <NA> <NA> <NA>
180 chr1.1846921.1847585 Tigger2 DNA DNA
181 chr1.1852436.1853334 AluYm1 SINE SINE
182 chr1.1852436.1853334 AluJr SINE SINE
183 chr1.1852436.1853334 L2b LINE LINE
184 chr1.1858673.1859607 MER119 DNA DNA
185 chr1.1858673.1859607 AluSz SINE SINE
186 chr1.1858673.1859607 MER119 DNA DNA
187 chr1.1858673.1859607 AluJo SINE SINE
188 chr1.1858673.1859607 MER119 DNA DNA
189 chr1.1873139.1873487 FLAM_C SINE SINE
190 chr1.1873139.1873487 MLT1H LTR LTR
191 chr1.1876333.1876917 AluJr SINE SINE
192 chr1.1876333.1876917 GA-rich Other Low_complexity
193 chr1.1876333.1876917 (CGAG)n Other Simple_repeat
194 chr1.1876333.1876917 AluJo SINE SINE
195 chr1.1876333.1876917 MIRb SINE SINE
196 chr1.1889911.1890468 <NA> <NA> <NA>
197 chr1.1890818.1892336 (CG)n Other Simple_repeat
198 chr1.1890818.1892336 (CGCTCC)n Other Simple_repeat
199 chr1.1890818.1892336 (CACGCG)n Other Simple_repeat
200 chr1.1890818.1892336 G-rich Other Low_complexity
201 chr1.1890818.1892336 G-rich Other Low_complexity
202 chr1.1897232.1897776 AluSx3 SINE SINE
203 chr1.1897232.1897776 AluSp SINE SINE
204 chr1.1897232.1897776 AluJb SINE SINE
205 chr1.1906137.1906856 AluJo SINE SINE
206 chr1.1906137.1906856 AluJb SINE SINE
207 chr1.1906137.1906856 L1MB5 LINE LINE
208 chr1.1906137.1906856 L2 LINE LINE
209 chr1.1908410.1909469 G-rich Other Low_complexity
210 chr1.1908410.1909469 AluSx1 SINE SINE
211 chr1.1919000.1920056 (GCAGCA)n Other Simple_repeat
212 chr1.1919000.1920056 G-rich Other Low_complexity
213 chr1.1925553.1926278 <NA> <NA> <NA>
214 chr1.1943849.1944519 MLT1D LTR LTR
215 chr1.1955689.1956008 (CTGCTC)n Other Simple_repeat
216 chr1.1959773.1960472 L1MEd LINE LINE
217 chr1.1969124.1969949 <NA> <NA> <NA>
218 chr1.1974699.1975175 <NA> <NA> <NA>
219 chr1.1980529.1981342 (ACCCCA)n Other Simple_repeat
220 chr1.1980529.1981342 ERVL-E-int LTR LTR
221 chr1.1989071.1989463 LTR18B LTR LTR
222 chr1.1989071.1989463 LTR18B LTR LTR
223 chr1.2003509.2004182 G-rich Other Low_complexity
224 chr1.2003509.2004182 MER102b DNA DNA
225 chr1.2019259.2019820 G-rich Other Low_complexity
226 chr1.2027695.2028304 <NA> <NA> <NA>
227 chr1.2046542.2046745 <NA> <NA> <NA>
228 chr1.2049460.2051011 MER5A DNA DNA
229 chr1.2061238.2062042 <NA> <NA> <NA>
230 chr1.2088446.2088728 L2a LINE LINE
231 chr1.2091741.2091879 <NA> <NA> <NA>
232 chr1.2099966.2100135 <NA> <NA> <NA>
233 chr1.2104414.2105282 <NA> <NA> <NA>
234 chr1.2108429.2108851 MLT1D LTR LTR
235 chr1.2115746.2116344 MER21C LTR LTR
236 chr1.2115746.2116344 L1MEg LINE LINE
237 chr1.2121078.2121580 AluSx SINE SINE
238 chr1.2121078.2121580 MLT-int LTR LTR
239 chr1.2121078.2121580 MLT1A LTR LTR
240 chr1.2124438.2124762 MLT1A LTR LTR
241 chr1.2133045.2133944 <NA> <NA> <NA>
242 chr1.2135358.2135937 <NA> <NA> <NA>
243 chr1.2139882.2140325 L1MEd LINE LINE
244 chr1.2160122.2161174 (GT)n Other Simple_repeat
245 chr1.2174200.2174764 <NA> <NA> <NA>
246 chr1.2179979.2180774 (GACGCG)n Other Simple_repeat
247 chr1.2189406.2190357 MER5A DNA DNA
248 chr1.2190487.2190881 <NA> <NA> <NA>
249 chr1.2194703.2195588 (CTGGCCC)n Other Simple_repeat
250 chr1.2199219.2199726 (CCCAG)n Other Simple_repeat
251 chr1.2199219.2199726 MLT1C LTR LTR
252 chr1.2204373.2204898 <NA> <NA> <NA>
253 chr1.2205192.2205684 <NA> <NA> <NA>
254 chr1.2212300.2213333 <NA> <NA> <NA>
255 chr1.2214131.2214452 (GGCAG)n Other Simple_repeat
256 chr1.2227349.2228092 <NA> <NA> <NA>
257 chr1.2228949.2229752 (CGC)n Other Simple_repeat
258 chr1.2230946.2232114 (TG)n Other Simple_repeat
259 chr1.2240101.2240542 <NA> <NA> <NA>
260 chr1.2243261.2243707 <NA> <NA> <NA>
261 chr1.2246177.2246856 L1MB3 LINE LINE
262 chr1.2255884.2256279 <NA> <NA> <NA>
263 chr1.2269073.2269782 AluJr SINE SINE
264 chr1.2270390.2270728 <NA> <NA> <NA>
265 chr1.2277707.2278599 (CACT)n Other Simple_repeat
266 chr1.2277707.2278599 MLT1A0 LTR LTR
267 chr1.2279093.2279871 G-rich Other Low_complexity
268 chr1.2279093.2279871 FLAM_C SINE SINE
269 chr1.2282506.2283813 <NA> <NA> <NA>
270 chr1.2290200.2290450 <NA> <NA> <NA>
271 chr1.2299140.2299784 <NA> <NA> <NA>
272 chr1.2304766.2305315 (CA)n Other Simple_repeat
273 chr1.2311386.2311782 <NA> <NA> <NA>
274 chr1.2314167.2314736 (GGCCCT)n Other Simple_repeat
275 chr1.2315568.2316198 <NA> <NA> <NA>
276 chr1.2322264.2322695 <NA> <NA> <NA>
277 chr1.2330693.2331477 <NA> <NA> <NA>
278 chr1.2340722.2340997 <NA> <NA> <NA>
279 chr1.2348014.2349104 L1MC4 LINE LINE
280 chr1.2348014.2349104 L1MC5a LINE LINE
281 chr1.2355088.2355694 <NA> <NA> <NA>
282 chr1.2381276.2382311 MIRb SINE SINE
283 chr1.2382694.2382834 <NA> <NA> <NA>
284 chr1.2391052.2392191 G-rich Other Low_complexity
285 chr1.2411844.2413310 (GCCGCGC)n Other Simple_repeat
286 chr1.2411844.2413310 G-rich Other Low_complexity
287 chr1.2431113.2431838 (TG)n Other Simple_repeat
288 chr1.2431113.2431838 (GT)n Other Simple_repeat
289 chr1.2431113.2431838 G-rich Other Low_complexity
290 chr1.2437690.2437991 (AC)n Other Simple_repeat
291 chr1.2446428.2446954 <NA> <NA> <NA>
292 chr1.2801563.2801991 (CA)n Other Simple_repeat
293 chr1.2821939.2822368 MIR1_Amn SINE SINE
294 chr1.2925986.2926863 <NA> <NA> <NA>
295 chr1.2951618.2952467 <NA> <NA> <NA>
296 chr1.3012603.3013220 <NA> <NA> <NA>
297 chr1.3060850.3061623 G-rich Other Low_complexity
298 chr1.3066258.3066708 (GGCCA)n Other Simple_repeat
299 chr1.3068869.3069297 (GGC)n Other Simple_repeat
300 chr1.3069690.3070248 (CT)n Other Simple_repeat
301 chr1.3101143.3101580 (CTC)n Other Simple_repeat
302 chr1.3114790.3115158 (CCCAG)n Other Simple_repeat
303 chr1.3127241.3127938 <NA> <NA> <NA>
304 chr1.3137099.3137585 <NA> <NA> <NA>
305 chr1.3139707.3140006 <NA> <NA> <NA>
306 chr1.3145570.3145786 <NA> <NA> <NA>
307 chr1.3146983.3147615 (GT)n Other Simple_repeat
308 chr1.3164665.3165159 <NA> <NA> <NA>
309 chr1.3170369.3171557 <NA> <NA> <NA>
310 chr1.3174451.3174647 MIRc SINE SINE
311 chr1.3180854.3182014 (CTTACACATG)n Other Simple_repeat
312 chr1.3186434.3187076 <NA> <NA> <NA>
313 chr1.3187418.3187940 <NA> <NA> <NA>
314 chr1.3198750.3199217 <NA> <NA> <NA>
315 chr1.3206334.3206966 <NA> <NA> <NA>
316 chr1.3219310.3219523 <NA> <NA> <NA>
317 chr1.3229364.3229710 <NA> <NA> <NA>
318 chr1.3270688.3271364 <NA> <NA> <NA>
319 chr1.3283828.3284221 <NA> <NA> <NA>
320 chr1.3290998.3291216 <NA> <NA> <NA>
321 chr1.3291923.3292783 <NA> <NA> <NA>
322 chr1.3293301.3293650 <NA> <NA> <NA>
323 chr1.3312979.3313889 (AGCGGAG)n Other Simple_repeat
324 chr1.3319905.3321153 (TG)n Other Simple_repeat
325 chr1.3323082.3323599 <NA> <NA> <NA>
326 chr1.3328038.3328727 MER20 DNA DNA
327 chr1.3329802.3330225 <NA> <NA> <NA>
328 chr1.3348889.3350013 <NA> <NA> <NA>
329 chr1.3350746.3351295 <NA> <NA> <NA>
330 chr1.3352458.3353164 (CTTTC)n Other Simple_repeat
331 chr1.3360711.3361349 <NA> <NA> <NA>
332 chr1.3366105.3366473 <NA> <NA> <NA>
333 chr1.3369779.3370263 L2b LINE LINE
334 chr1.3375039.3375568 <NA> <NA> <NA>
335 chr1.3377729.3378070 <NA> <NA> <NA>
336 chr1.3378423.3378869 MIR SINE SINE
337 chr1.3393116.3394329 <NA> <NA> <NA>
338 chr1.3408398.3409463 <NA> <NA> <NA>
339 chr1.3410241.3410926 <NA> <NA> <NA>
340 chr1.3423164.3423823 <NA> <NA> <NA>
341 chr1.3424432.3425112 AluY SINE SINE
342 chr1.3431233.3431647 <NA> <NA> <NA>
343 chr1.3453094.3453671 MIR3 SINE SINE
344 chr1.3454051.3455050 MIRc SINE SINE
345 chr1.3460108.3461001 <NA> <NA> <NA>
346 chr1.3471265.3472241 G-rich Other Low_complexity
347 chr1.3479748.3480669 G-rich Other Low_complexity
348 chr1.3483805.3484270 <NA> <NA> <NA>
349 chr1.3491182.3492272 (GCACCCG)n Other Simple_repeat
350 chr1.3491182.3492272 (GCCCC)n Other Simple_repeat
351 chr1.3491182.3492272 G-rich Other Low_complexity
352 chr1.3492412.3492583 <NA> <NA> <NA>
353 chr1.3501476.3501969 <NA> <NA> <NA>
354 chr1.3502068.3502639 G-rich Other Low_complexity
355 chr1.3529405.3529760 (GCCCCCA)n Other Simple_repeat
356 chr1.3530500.3531732 (CCGGCC)n Other Simple_repeat
357 chr1.3530500.3531732 (GCCCC)n Other Simple_repeat
358 chr1.3530500.3531732 (CACAGA)n Other Simple_repeat
359 chr1.3542902.3543816 <NA> <NA> <NA>
360 chr1.3548154.3548665 <NA> <NA> <NA>
361 chr1.3565347.3565802 <NA> <NA> <NA>
362 chr1.3565983.3566425 <NA> <NA> <NA>
363 chr1.3567877.3568284 <NA> <NA> <NA>
364 chr1.3586032.3586600 (TG)n Other Simple_repeat
365 chr1.3587043.3587817 LTR62 LTR LTR
366 chr1.3590141.3590937 <NA> <NA> <NA>
367 chr1.3611051.3612045 (CCGCCC)n Other Simple_repeat
368 chr1.3611051.3612045 (CCCCT)n Other Simple_repeat
369 chr1.3611051.3612045 (CCGCCC)n Other Simple_repeat
370 chr1.3611051.3612045 (GACCTCA)n Other Simple_repeat
371 chr1.3613317.3614126 L2b LINE LINE
372 chr1.3613317.3614126 Arthur1A DNA DNA
373 chr1.3614836.3615056 <NA> <NA> <NA>
374 chr1.3618742.3619432 <NA> <NA> <NA>
375 chr1.3624107.3625115 <NA> <NA> <NA>
376 chr1.3625399.3625845 <NA> <NA> <NA>
377 chr1.3643071.3643418 <NA> <NA> <NA>
378 chr1.3649859.3650242 <NA> <NA> <NA>
379 chr1.3651361.3651817 <NA> <NA> <NA>
380 chr1.3652579.3653272 <NA> <NA> <NA>
381 chr1.3654627.3654991 MIR SINE SINE
382 chr1.3668739.3669415 (GCAGGTG)n Other Simple_repeat
383 chr1.3671779.3672121 <NA> <NA> <NA>
384 chr1.3674477.3674905 <NA> <NA> <NA>
385 chr1.3684097.3684335 <NA> <NA> <NA>
386 chr1.3695412.3696079 L2b LINE LINE
387 chr1.3703258.3703775 <NA> <NA> <NA>
388 chr1.3713084.3713447 <NA> <NA> <NA>
389 chr1.3724250.3724826 AluSz SINE SINE
390 chr1.3727090.3727719 <NA> <NA> <NA>
391 chr1.3746238.3747598 (GGCGCGG)n Other Simple_repeat
392 chr1.3771681.3773111 <NA> <NA> <NA>
393 chr1.3774771.3775727 (CTCCC)n Other Simple_repeat
394 chr1.3774771.3775727 MIRc SINE SINE
395 chr1.3785163.3785668 <NA> <NA> <NA>
396 chr1.3790117.3790721 <NA> <NA> <NA>
397 chr1.3795662.3796920 (GGGTG)n Other Simple_repeat
398 chr1.3795662.3796920 MER4A LTR LTR
399 chr1.3801559.3801731 LTR13 LTR LTR
400 chr1.3804024.3804395 HERVK13-int LTR LTR
401 chr1.3811098.3811607 MIR SINE SINE
402 chr1.3811098.3811607 MIRb SINE SINE
403 chr1.3827801.3828340 L2a LINE LINE
404 chr1.3856572.3857938 (CCGCGCC)n Other Simple_repeat
405 chr1.3900015.3901563 (C)n Other Simple_repeat
406 chr1.3910729.3911379 MIRc SINE SINE
407 chr1.4161765.4162281 (TCTTTC)n Other Simple_repeat
408 chr1.4161765.4162281 (TCTGTC)n Other Simple_repeat
409 chr1.4375895.4376168 L1ME2 LINE LINE
410 chr1.4603232.4603795 MER54B LTR LTR
411 chr1.4605079.4605978 L2 LINE LINE
412 chr1.4627614.4627810 <NA> <NA> <NA>
413 chr1.4650520.4650755 <NA> <NA> <NA>
414 chr1.4652641.4653157 MIRb SINE SINE
415 chr1.4655205.4656772 G-rich Other Low_complexity
416 chr1.4690980.4691432 <NA> <NA> <NA>
417 chr1.4696177.4696502 LTR90B LTR LTR
418 chr1.4699354.4699705 <NA> <NA> <NA>
419 chr1.4710778.4711524 Tigger19b DNA DNA
420 chr1.4750133.4750589 <NA> <NA> <NA>
421 chr1.4755434.4756085 MER31A LTR LTR
422 chr1.4778082.4778726 (TC)n Other Simple_repeat
423 chr1.4805919.4806295 L2b LINE LINE
424 chr1.4805919.4806295 L1ME1 LINE LINE
425 chr1.4826064.4826354 <NA> <NA> <NA>
426 chr1.4837755.4838070 AluJb SINE SINE
427 chr1.4871044.4871789 (AC)n Other Simple_repeat
428 chr1.5119400.5119927 LTR37A LTR LTR
429 chr1.5141116.5141448 MIR1_Amn SINE SINE
430 chr1.5164296.5164504 MLT1J2 LTR LTR
431 chr1.5171947.5172514 L4_C_Mam LINE LINE
432 chr1.5223363.5223584 <NA> <NA> <NA>
433 chr1.5239938.5240317 MLT1H2 LTR LTR
434 chr1.5409467.5409801 <NA> <NA> <NA>
435 chr1.5423163.5423597 <NA> <NA> <NA>
436 chr1.5456046.5456315 L2a LINE LINE
437 chr1.5482025.5482306 <NA> <NA> <NA>
438 chr1.5509807.5510171 (GGAGGAG)n Other Simple_repeat
439 chr1.5514152.5514830 L2a LINE LINE
440 chr1.5514152.5514830 L2a LINE LINE
441 chr1.5551482.5551970 MIRc SINE SINE
442 chr1.5551482.5551970 MIRc SINE SINE
443 chr1.5597308.5597736 MLT1B LTR LTR
444 chr1.5611442.5612135 <NA> <NA> <NA>
445 chr1.5620921.5621368 <NA> <NA> <NA>
446 chr1.5632264.5632512 <NA> <NA> <NA>
447 chr1.5646461.5646800 L2a LINE LINE
448 chr1.5647203.5647628 MER77B LTR LTR
449 chr1.5652105.5652782 MIRb SINE SINE
450 chr1.5660042.5660561 <NA> <NA> <NA>
451 chr1.5745798.5746363 (GGACCT)n Other Simple_repeat
452 chr1.5752206.5753204 <NA> <NA> <NA>
453 chr1.5757962.5758663 (CA)n Other Simple_repeat
454 chr1.5771003.5771489 <NA> <NA> <NA>
455 chr1.5798334.5798533 <NA> <NA> <NA>
456 chr1.5847058.5847720 MIRb SINE SINE
457 chr1.5847058.5847720 MLT1A0 LTR LTR
458 chr1.5913435.5913775 <NA> <NA> <NA>
459 chr1.5915833.5916379 <NA> <NA> <NA>
460 chr1.5975091.5975699 <NA> <NA> <NA>
461 chr1.5980426.5980897 L2a LINE LINE
462 chr1.5982938.5983117 L1M5 LINE LINE
463 chr1.5983391.5983681 MER68 LTR LTR
464 chr1.5992012.5992993 <NA> <NA> <NA>
465 chr1.6002300.6003138 MIRc SINE SINE
466 chr1.6006931.6007332 <NA> <NA> <NA>
467 chr1.6012803.6013365 (GGAGGT)n Other Simple_repeat
468 chr1.6012803.6013365 L2b LINE LINE
469 chr1.6016177.6016620 <NA> <NA> <NA>
470 chr1.6026089.6026455 <NA> <NA> <NA>
471 chr1.6033980.6034856 L2a LINE LINE
472 chr1.6041320.6041845 (CT)n Other Simple_repeat
473 chr1.6052383.6053382 AluJb SINE SINE
474 chr1.6052383.6053382 MER53 DNA DNA
475 chr1.6052383.6053382 L2a LINE LINE
476 chr1.6059859.6060287 <NA> <NA> <NA>
477 chr1.6108881.6109300 <NA> <NA> <NA>
478 chr1.6143192.6143836 AluJo SINE SINE
479 chr1.6148348.6149046 MIRb SINE SINE
480 chr1.6148348.6149046 (TCC)n Other Simple_repeat
481 chr1.6157219.6158196 MER113 DNA DNA
482 chr1.6171480.6172136 <NA> <NA> <NA>
483 chr1.6179109.6179551 G-rich Other Low_complexity
484 chr1.6185728.6186026 <NA> <NA> <NA>
485 chr1.6198894.6200083 G-rich Other Low_complexity
486 chr1.6198894.6200083 L2b LINE LINE
487 chr1.6205000.6206457 MIR3 SINE SINE
488 chr1.6205000.6206457 AluSz SINE SINE
489 chr1.6206990.6208117 MIR3 SINE SINE
490 chr1.6206990.6208117 MIRc SINE SINE
491 chr1.6209210.6209547 <NA> <NA> <NA>
492 chr1.6220342.6220588 L2b LINE LINE
493 chr1.6222614.6223053 <NA> <NA> <NA>
494 chr1.6224709.6225570 <NA> <NA> <NA>
495 chr1.6233240.6233732 <NA> <NA> <NA>
496 chr1.6235707.6236232 (CGGC)n Other Simple_repeat
497 chr1.6235707.6236232 (CCCG)n Other Simple_repeat
498 chr1.6238721.6239018 <NA> <NA> <NA>
499 chr1.6245103.6245680 <NA> <NA> <NA>
500 chr1.6246675.6247113 <NA> <NA> <NA>
501 chr1.6259619.6260305 MIRc SINE SINE
502 chr1.6260484.6260861 (GGCTCC)n Other Simple_repeat
503 chr1.6260995.6262147 (CGCTC)n Other Simple_repeat
504 chr1.6260995.6262147 (CCGC)n Other Simple_repeat
505 chr1.6260995.6262147 L2c LINE LINE
506 chr1.6260995.6262147 (CCT)n Other Simple_repeat
507 chr1.6273299.6273579 <NA> <NA> <NA>
508 chr1.6276079.6276805 <NA> <NA> <NA>
509 chr1.6280748.6281203 <NA> <NA> <NA>
510 chr1.6290089.6290438 MLT1D LTR LTR
511 chr1.6290089.6290438 MLT1D LTR LTR
512 chr1.6293165.6293422 AluY SINE SINE
513 chr1.6303752.6303941 <NA> <NA> <NA>
514 chr1.6338940.6339622 MIR SINE SINE
515 chr1.6338940.6339622 (CAGCC)n Other Simple_repeat
516 chr1.6343267.6343859 MER5A DNA DNA
517 chr1.6348036.6348345 (CA)n Other Simple_repeat
518 chr1.6352280.6352532 (CCCT)n Other Simple_repeat
519 chr1.6353741.6354381 L2b LINE LINE
520 chr1.6358797.6360169 (CTCCCCT)n Other Simple_repeat
521 chr1.6363143.6363411 LTR13 LTR LTR
522 chr1.6367745.6368153 MER52D LTR LTR
523 chr1.6385518.6386463 L1MC5 LINE LINE
524 chr1.6392707.6394204 G-rich Other Low_complexity
525 chr1.6392707.6394204 (GGC)n Other Simple_repeat
526 chr1.6392707.6394204 (CCGCC)n Other Simple_repeat
527 chr1.6392707.6394204 (CGCGC)n Other Simple_repeat
528 chr1.6404668.6405248 AluY SINE SINE
529 chr1.6404668.6405248 (AAAT)n Other Simple_repeat
530 chr1.6414172.6415045 AluSx4 SINE SINE
531 chr1.6414172.6415045 (ACACAC)n Other Simple_repeat
532 chr1.6414172.6415045 AluJo SINE SINE
533 chr1.6418957.6419364 G-rich Other Low_complexity
534 chr1.6419788.6420519 MIR3 SINE SINE
535 chr1.6423437.6423909 <NA> <NA> <NA>
536 chr1.6429971.6430408 <NA> <NA> <NA>
537 chr1.6437958.6438637 MIRb SINE SINE
538 chr1.6437958.6438637 MIRb SINE SINE
539 chr1.6440326.6440881 G-rich Other Low_complexity
540 chr1.6440326.6440881 (GCCCCCC)n Other Simple_repeat
541 chr1.6445013.6445495 (CA)n Other Simple_repeat
542 chr1.6448647.6449649 (GCC)n Other Simple_repeat
543 chr1.6448647.6449649 MIR3 SINE SINE
544 chr1.6453904.6454980 <NA> <NA> <NA>
545 chr1.6455500.6455871 <NA> <NA> <NA>
546 chr1.6475346.6476025 (CTC)n Other Simple_repeat
547 chr1.6486279.6486919 MIRc SINE SINE
548 chr1.6489915.6491017 <NA> <NA> <NA>
549 chr1.6491517.6491869 L3 LINE LINE
550 chr1.6497198.6497898 L1ME3A LINE LINE
551 chr1.6515565.6516349 AluJr4 SINE SINE
552 chr1.6515565.6516349 L1ME4b LINE LINE
553 chr1.6515565.6516349 FLAM_A SINE SINE
554 chr1.6515565.6516349 L1ME4b LINE LINE
555 chr1.6517523.6517736 <NA> <NA> <NA>
556 chr1.6520072.6520623 OldhAT1 DNA DNA
557 chr1.6520072.6520623 FLAM_C SINE SINE
558 chr1.6523529.6523887 AluSq SINE SINE
559 chr1.6544662.6545153 <NA> <NA> <NA>
560 chr1.6553643.6554743 AluSc8 SINE SINE
561 chr1.6553643.6554743 G-rich Other Low_complexity
562 chr1.6579482.6580797 <NA> <NA> <NA>
563 chr1.6600627.6604472 (GCGGC)n Other Simple_repeat
564 chr1.6612747.6614525 (CCG)n Other Simple_repeat
565 chr1.6612747.6614525 (CCGCCC)n Other Simple_repeat
566 chr1.6624768.6626057 (GCCCC)n Other Simple_repeat
567 chr1.6624768.6626057 L2a LINE LINE
568 chr1.6624768.6626057 L1ME3A LINE LINE
569 chr1.6624768.6626057 AluJo SINE SINE
570 chr1.6634528.6635080 <NA> <NA> <NA>
571 chr1.6646281.6646948 MER5B DNA DNA
572 chr1.6646281.6646948 AluJb SINE SINE
573 chr1.6656683.6657185 AluJb SINE SINE
574 chr1.6656683.6657185 BLACKJACK DNA DNA
575 chr1.6656683.6657185 MLT1H1 LTR LTR
576 chr1.6656683.6657185 MLT1H1 LTR LTR
577 chr1.6666804.6667023 <NA> <NA> <NA>
578 chr1.6672584.6673140 AluSq2 SINE SINE
579 chr1.6674884.6675128 <NA> <NA> <NA>
580 chr1.6686325.6686736 Charlie1b DNA DNA
581 chr1.6686325.6686736 MLT1I LTR LTR
582 chr1.6691555.6691826 CR1_Mam LINE LINE
583 chr1.6700756.6702203 AluSx SINE SINE
584 chr1.6704228.6704468 <NA> <NA> <NA>
585 chr1.6719922.6720308 <NA> <NA> <NA>
586 chr1.6724425.6725197 MSTA LTR LTR
587 chr1.6724425.6725197 (T)n Other Simple_repeat
588 chr1.6724425.6725197 MER130 DNA DNA
589 chr1.6727553.6727917 MER20 DNA DNA
590 chr1.6743637.6744120 <NA> <NA> <NA>
591 chr1.6770655.6771281 OldhAT1 DNA DNA
592 chr1.6784268.6785551 (GCCGGC)n Other Simple_repeat
593 chr1.6785895.6786654 <NA> <NA> <NA>
594 chr1.6793431.6793688 <NA> <NA> <NA>
595 chr1.6795840.6796482 AluJb SINE SINE
596 chr1.6800853.6801485 <NA> <NA> <NA>
597 chr1.6801998.6802701 <NA> <NA> <NA>
598 chr1.6803393.6803878 Tigger15a DNA DNA
599 chr1.6803393.6803878 AluJr4 SINE SINE
600 chr1.6807692.6808108 AluSc8 SINE SINE
601 chr1.6807692.6808108 L2b LINE LINE
602 chr1.6859409.6859752 AluJo SINE SINE
603 chr1.6860108.6860795 L1M5 LINE LINE
604 chr1.6860108.6860795 AluSz SINE SINE
605 chr1.6867817.6868140 AluJo SINE SINE
606 chr1.6870715.6870881 <NA> <NA> <NA>
607 chr1.6874951.6875563 MIRb SINE SINE
608 chr1.6874951.6875563 AluSx3 SINE SINE
609 chr1.6888345.6888536 <NA> <NA> <NA>
610 chr1.6889992.6890377 <NA> <NA> <NA>
611 chr1.6891885.6892457 MIRc SINE SINE
612 chr1.6904594.6905029 AluJo SINE SINE
613 chr1.6904594.6905029 (T)n Other Simple_repeat
614 chr1.6904594.6905029 AluJo SINE SINE
615 chr1.6924705.6925320 <NA> <NA> <NA>
616 chr1.6925805.6926158 MIR SINE SINE
617 chr1.6948290.6949354 MIRc SINE SINE
618 chr1.6948290.6949354 MIRc SINE SINE
619 chr1.6949922.6950631 MIRb SINE SINE
620 chr1.6949922.6950631 MLT1I LTR LTR
621 chr1.6962149.6963541 (CCTCC)n Other Simple_repeat
622 chr1.6962149.6963541 (C)n Other Simple_repeat
623 chr1.6970937.6971334 <NA> <NA> <NA>
624 chr1.6991351.6991786 L1ME2z LINE LINE
625 chr1.6991351.6991786 AluSz6 SINE SINE
626 chr1.6998190.6998617 AluSx SINE SINE
627 chr1.6998190.6998617 L2 LINE LINE
628 chr1.7013652.7014525 <NA> <NA> <NA>
629 chr1.7046323.7046702 L2c LINE LINE
630 chr1.7069945.7071056 MIRc SINE SINE
631 chr1.7075463.7075727 MER112 DNA DNA
632 chr1.7075463.7075727 AluSx SINE SINE
633 chr1.7093378.7093689 <NA> <NA> <NA>
634 chr1.7117440.7118211 MER63B DNA DNA
635 chr1.7127572.7128067 L2c LINE LINE
636 chr1.7127572.7128067 MER68 LTR LTR
637 chr1.7147956.7148494 (CA)n Other Simple_repeat
638 chr1.7149379.7149954 <NA> <NA> <NA>
639 chr1.7167294.7167547 L1M5 LINE LINE
640 chr1.7172736.7173445 AluSq2 SINE SINE
641 chr1.7177110.7177410 <NA> <NA> <NA>
642 chr1.7207782.7208352 <NA> <NA> <NA>
643 chr1.7265770.7266249 MER33 DNA DNA
644 chr1.7267545.7267892 <NA> <NA> <NA>
645 chr1.7284979.7285428 <NA> <NA> <NA>
646 chr1.7299068.7299752 MIR3 SINE SINE
647 chr1.7300966.7301277 <NA> <NA> <NA>
648 chr1.7334467.7334874 <NA> <NA> <NA>
649 chr1.7341189.7342023 MIR SINE SINE
650 chr1.7346779.7347379 <NA> <NA> <NA>
651 chr1.7363405.7363938 MIR3 SINE SINE
652 chr1.7366832.7367215 <NA> <NA> <NA>
653 chr1.7369737.7370202 MER77B LTR LTR
654 chr1.7379515.7379918 <NA> <NA> <NA>
655 chr1.7388772.7390122 <NA> <NA> <NA>
656 chr1.7401823.7402374 L1ME1 LINE LINE
657 chr1.7401823.7402374 MIRc SINE SINE
658 chr1.7438777.7439094 MIRb SINE SINE
659 chr1.7454199.7454463 MIRb SINE SINE
660 chr1.7456168.7456956 GA-rich Other Low_complexity
661 chr1.7469372.7469502 <NA> <NA> <NA>
662 chr1.7470947.7472172 (CTGT)n Other Simple_repeat
663 chr1.7470947.7472172 MIR3 SINE SINE
664 chr1.7478880.7479284 <NA> <NA> <NA>
665 chr1.7479863.7480237 <NA> <NA> <NA>
666 chr1.7482893.7483170 <NA> <NA> <NA>
667 chr1.7500713.7501069 <NA> <NA> <NA>
668 chr1.7505786.7506304 <NA> <NA> <NA>
669 chr1.7516362.7516814 Plat_L3 LINE LINE
670 chr1.7517854.7518454 <NA> <NA> <NA>
671 chr1.7526394.7526950 <NA> <NA> <NA>
672 chr1.7528290.7528618 L1ME4a LINE LINE
673 chr1.7538171.7538412 MER63A DNA DNA
674 chr1.7538171.7538412 AluJb SINE SINE
675 chr1.7539588.7540093 MER91C DNA DNA
676 chr1.7539588.7540093 L2c LINE LINE
677 chr1.7549300.7550031 L2a LINE LINE
678 chr1.7549300.7550031 L2b LINE LINE
679 chr1.7557826.7558464 G-rich Other Low_complexity
680 chr1.7561430.7561776 <NA> <NA> <NA>
681 chr1.7577223.7577521 <NA> <NA> <NA>
682 chr1.7586076.7586786 <NA> <NA> <NA>
683 chr1.7588201.7588602 MIRc SINE SINE
684 chr1.7590173.7590449 <NA> <NA> <NA>
685 chr1.7614248.7614910 <NA> <NA> <NA>
686 chr1.7616961.7617355 <NA> <NA> <NA>
687 chr1.7621559.7622129 <NA> <NA> <NA>
688 chr1.7642091.7642585 <NA> <NA> <NA>
689 chr1.7645546.7645857 <NA> <NA> <NA>
690 chr1.7647174.7647838 AluJo SINE SINE
691 chr1.7667444.7668008 MIR3 SINE SINE
692 chr1.7669446.7669914 <NA> <NA> <NA>
693 chr1.7672979.7673445 MIRb SINE SINE
694 chr1.7680008.7680865 (CCCTC)n Other Simple_repeat
695 chr1.7680008.7680865 (CG)n Other Simple_repeat
696 chr1.7680008.7680865 (CAG)n Other Simple_repeat
697 chr1.7695209.7695677 <NA> <NA> <NA>
698 chr1.7702429.7702659 L2b LINE LINE
699 chr1.7704512.7704924 <NA> <NA> <NA>
700 chr1.7719660.7719967 <NA> <NA> <NA>
701 chr1.7722073.7722717 L2 LINE LINE
702 chr1.7752555.7753371 <NA> <NA> <NA>
703 chr1.7770872.7772383 (CGC)n Other Simple_repeat
704 chr1.7770872.7772383 MIRb SINE SINE
705 chr1.7783445.7783629 <NA> <NA> <NA>
706 chr1.7783798.7784438 (CCTCT)n Other Simple_repeat
707 chr1.7810372.7810694 <NA> <NA> <NA>
708 chr1.7845646.7846237 MIR SINE SINE
709 chr1.7845646.7846237 AluYm1 SINE SINE
710 chr1.7902679.7903019 AluJr SINE SINE
711 chr1.7920538.7920897 AluJb SINE SINE
712 chr1.7940754.7941319 <NA> <NA> <NA>
713 chr1.7942252.7942710 <NA> <NA> <NA>
714 chr1.7953683.7954624 AluJo SINE SINE
715 chr1.7961156.7962151 L2a LINE LINE
716 chr1.7961156.7962151 (GCGT)n Other Simple_repeat
717 chr1.7975205.7975576 <NA> <NA> <NA>
718 chr1.7982191.7982708 AluSx1 SINE SINE
719 chr1.7990106.7990678 (CATCAC)n Other Simple_repeat
720 chr1.7991924.7992362 <NA> <NA> <NA>
721 chr1.8004395.8005594 <NA> <NA> <NA>
722 chr1.8014629.8015458 <NA> <NA> <NA>
723 chr1.8020105.8020351 <NA> <NA> <NA>
724 chr1.8025629.8027230 (TCGCGC)n Other Simple_repeat
725 chr1.8025629.8027230 (CCG)n Other Simple_repeat
726 chr1.8032396.8032678 <NA> <NA> <NA>
727 chr1.8040514.8040944 LTR16A LTR LTR
728 chr1.8040514.8040944 L1MEd LINE LINE
729 chr1.8055919.8056344 AluJb SINE SINE
730 chr1.8055919.8056344 (TTT)n Other Simple_repeat
731 chr1.8055919.8056344 L2a LINE LINE
732 chr1.8061287.8061735 MIR SINE SINE
733 chr1.8062015.8062372 Charlie10 DNA DNA
734 chr1.8062015.8062372 A-rich Other Low_complexity
735 chr1.8062015.8062372 AluSz SINE SINE
736 chr1.8075541.8075907 AluSx SINE SINE
737 chr1.8075541.8075907 MER34C2 LTR LTR
738 chr1.8076980.8077670 AluSx3 SINE SINE
739 chr1.8077998.8078726 L2c LINE LINE
740 chr1.8083049.8084331 (TAT)n Other Simple_repeat
741 chr1.8090178.8090755 <NA> <NA> <NA>
742 chr1.8094507.8094759 <NA> <NA> <NA>
743 chr1.8097348.8098001 L1MC1 LINE LINE
744 chr1.8117977.8118527 AluSx3 SINE SINE
745 chr1.8121173.8121859 AluJb SINE SINE
746 chr1.8133494.8134442 OldhAT1 DNA DNA
747 chr1.8136721.8137167 AluJo SINE SINE
748 chr1.8136721.8137167 AluY SINE SINE
749 chr1.8137844.8138120 L4_C_Mam LINE LINE
750 chr1.8147893.8148257 LTR79 LTR LTR
751 chr1.8147893.8148257 HAL1 LINE LINE
752 chr1.8154674.8155061 <NA> <NA> <NA>
753 chr1.8155635.8155977 L4_B_Mam LINE LINE
754 chr1.8155635.8155977 GA-rich Other Low_complexity
755 chr1.8155635.8155977 AluJb SINE SINE
756 chr1.8167220.8167798 (CA)n Other Simple_repeat
757 chr1.8167220.8167798 AluSx1 SINE SINE
758 chr1.8174316.8174869 AluSz SINE SINE
759 chr1.8174316.8174869 L1ME3F LINE LINE
760 chr1.8184373.8184581 L1MC5a LINE LINE
761 chr1.8189581.8190297 <NA> <NA> <NA>
762 chr1.8197625.8198336 AluJr SINE SINE
763 chr1.8197625.8198336 L1MC4 LINE LINE
764 chr1.8197625.8198336 MIR SINE SINE
765 chr1.8201292.8201713 <NA> <NA> <NA>
766 chr1.8202264.8202839 L3 LINE LINE
767 chr1.8202264.8202839 MamRTE1 LINE LINE
768 chr1.8211906.8212360 <NA> <NA> <NA>
769 chr1.8231955.8232658 MLT1N2 LTR LTR
770 chr1.8231955.8232658 GA-rich Other Low_complexity
771 chr1.8238212.8238539 <NA> <NA> <NA>
772 chr1.8239541.8240180 FLAM_C SINE SINE
773 chr1.8239541.8240180 AluSc8 SINE SINE
774 chr1.8259345.8259777 <NA> <NA> <NA>
775 chr1.8269207.8269522 AluJb SINE SINE
776 chr1.8276278.8276811 ERVL-E-int LTR LTR
777 chr1.8276278.8276811 MLT2B4 LTR LTR
778 chr1.8293148.8293527 L1M5 LINE LINE
779 chr1.8303181.8303592 MER39 LTR LTR
780 chr1.8303181.8303592 AluSx3 SINE SINE
781 chr1.8314221.8314783 MIRb SINE SINE
782 chr1.8317983.8318454 (CCGAGA)n Other Simple_repeat
783 chr1.8323562.8324031 L3 LINE LINE
784 chr1.8329482.8329921 <NA> <NA> <NA>
785 chr1.8343205.8343907 <NA> <NA> <NA>
786 chr1.8348914.8349361 <NA> <NA> <NA>
787 chr1.8351784.8352040 <NA> <NA> <NA>
788 chr1.8357465.8358089 <NA> <NA> <NA>
789 chr1.8358940.8359940 (CGCTCC)n Other Simple_repeat
790 chr1.8358940.8359940 (TTCTCC)n Other Simple_repeat
791 chr1.8367456.8368077 <NA> <NA> <NA>
792 chr1.8371027.8371725 <NA> <NA> <NA>
793 chr1.8373542.8374304 <NA> <NA> <NA>
794 chr1.8381910.8382315 <NA> <NA> <NA>
795 chr1.8395882.8397362 L1MB5 LINE LINE
796 chr1.8395882.8397362 MIR SINE SINE
797 chr1.8395882.8397362 MIRb SINE SINE
798 chr1.8402144.8402645 AluSc SINE SINE
799 chr1.8402144.8402645 MLT1G LTR LTR
800 chr1.8402144.8402645 L1ME3Cz LINE LINE
801 chr1.8408042.8408435 <NA> <NA> <NA>
802 chr1.8409093.8409465 <NA> <NA> <NA>
803 chr1.8411966.8412603 <NA> <NA> <NA>
804 chr1.8421881.8422016 <NA> <NA> <NA>
805 chr1.8422725.8425337 (GGCCCC)n Other Simple_repeat
806 chr1.8422725.8425337 L2c LINE LINE
807 chr1.8438601.8439438 <NA> <NA> <NA>
808 chr1.8440107.8440518 Charlie4a DNA DNA
809 chr1.8440107.8440518 AluSc5 SINE SINE
810 chr1.8443618.8443961 MSTA-int LTR LTR
811 chr1.8447781.8448153 <NA> <NA> <NA>
812 chr1.8448731.8449134 AluSg SINE SINE
813 chr1.8455662.8456783 L2c LINE LINE
814 chr1.8455662.8456783 L2a LINE LINE
815 chr1.8463170.8463927 GA-rich Other Low_complexity
816 chr1.8464406.8464704 L2a LINE LINE
817 chr1.8481745.8482138 L3 LINE LINE
818 chr1.8481745.8482138 L1MB8 LINE LINE
819 chr1.8483031.8483405 <NA> <NA> <NA>
820 chr1.8492771.8493054 AluJb SINE SINE
821 chr1.8492771.8493054 AluJb SINE SINE
822 chr1.8495961.8496430 AluJr SINE SINE
823 chr1.8495961.8496430 AluJr SINE SINE
824 chr1.8506812.8507552 MER104 DNA DNA
825 chr1.8506812.8507552 AluJb SINE SINE
826 chr1.8506812.8507552 AluSx SINE SINE
827 chr1.8510182.8510452 <NA> <NA> <NA>
828 chr1.8518093.8518527 <NA> <NA> <NA>
829 chr1.8525326.8526394 (T)n Other Simple_repeat
830 chr1.8542023.8542555 (CACA)n Other Simple_repeat
831 chr1.8542023.8542555 AluJr SINE SINE
832 chr1.8552816.8553506 <NA> <NA> <NA>
833 chr1.8556330.8556509 <NA> <NA> <NA>
834 chr1.8563048.8563742 <NA> <NA> <NA>
835 chr1.8570544.8570880 Charlie1b DNA DNA
836 chr1.8571376.8571866 <NA> <NA> <NA>
837 chr1.8580620.8580952 L1ME2z LINE LINE
838 chr1.8580620.8580952 AluJb SINE SINE
839 chr1.8590722.8591218 <NA> <NA> <NA>
840 chr1.8598113.8599139 <NA> <NA> <NA>
841 chr1.8602915.8603077 L2c LINE LINE
842 chr1.8625973.8627078 LTR19A LTR LTR
843 chr1.8629420.8629871 <NA> <NA> <NA>
844 chr1.8631274.8631773 AluJr4 SINE SINE
845 chr1.8652380.8652960 THE1C LTR LTR
846 chr1.8652380.8652960 FAM SINE SINE
847 chr1.8660310.8660764 Tigger19a DNA DNA
848 chr1.8660310.8660764 MIRc SINE SINE
849 chr1.8661338.8661787 L2a LINE LINE
850 chr1.8668325.8668452 <NA> <NA> <NA>
851 chr1.8670195.8671256 L2a LINE LINE
852 chr1.8670195.8671256 Charlie17 DNA DNA
853 chr1.8678664.8679905 AluSc8 SINE SINE
854 chr1.8678664.8679905 MER3 DNA DNA
855 chr1.8701063.8701441 (AC)n Other Simple_repeat
856 chr1.8702970.8703852 (GGCCGCT)n Other Simple_repeat
857 chr1.8706996.8707445 <NA> <NA> <NA>
858 chr1.8712163.8712995 <NA> <NA> <NA>
859 chr1.8726271.8727004 AluSg SINE SINE
860 chr1.8726271.8727004 AluSx SINE SINE
861 chr1.8740205.8740424 Tigger3b DNA DNA
862 chr1.8789381.8790123 <NA> <NA> <NA>
863 chr1.8816900.8818206 (T)n Other Simple_repeat
864 chr1.8816900.8818206 (CCGCCCC)n Other Simple_repeat
865 chr1.8822679.8823202 AmnSINE1 SINE SINE
866 chr1.8825907.8826488 MLT1M LTR LTR
867 chr1.8825907.8826488 MER44A DNA DNA
868 chr1.8848647.8849279 AluSx1 SINE SINE
869 chr1.8848647.8849279 (CAGC)n Other Simple_repeat
870 chr1.8848647.8849279 (AAAT)n Other Simple_repeat
871 chr1.8857907.8858607 AluSx SINE SINE
872 chr1.8857907.8858607 ERVL-B4-int LTR LTR
873 chr1.8862612.8862832 <NA> <NA> <NA>
874 chr1.8869128.8869555 <NA> <NA> <NA>
875 chr1.8871692.8872287 MER5A1 DNA DNA
876 chr1.8873577.8873895 G-rich Other Low_complexity
877 chr1.8877508.8879521 AluSp SINE SINE
878 chr1.8877508.8879521 (GCGCGG)n Other Simple_repeat
879 chr1.8877508.8879521 (CGCCTG)n Other Simple_repeat
880 chr1.8890016.8890934 Alu SINE SINE
881 chr1.8890016.8890934 (A)n Other Simple_repeat
882 chr1.8890016.8890934 MER51B LTR LTR
883 chr1.8890016.8890934 AluY SINE SINE
884 chr1.8890016.8890934 AluJb SINE SINE
885 chr1.8899851.8900377 AluSx1 SINE SINE
886 chr1.8899851.8900377 MER34A1 LTR LTR
887 chr1.8899851.8900377 MER41B LTR LTR
888 chr1.8899851.8900377 AluSz SINE SINE
889 chr1.8903953.8904388 (TCTCC)n Other Simple_repeat
890 chr1.8917985.8918474 AluSx SINE SINE
891 chr1.8937733.8938131 AluJb SINE SINE
892 chr1.8937733.8938131 MLT1D LTR LTR
893 chr1.8941771.8942357 Tigger15a DNA DNA
894 chr1.8941771.8942357 AluSx SINE SINE
895 chr1.8943491.8943820 MLT1M LTR LTR
896 chr1.8962784.8963178 L2 LINE LINE
897 chr1.8986210.8986620 AluJo SINE SINE
898 chr1.8987817.8988444 MIR3 SINE SINE
899 chr1.9004763.9005544 MER106B DNA DNA
900 chr1.9010129.9010272 <NA> <NA> <NA>
901 chr1.9039790.9041110 (GCCCCGA)n Other Simple_repeat
902 chr1.9039790.9041110 L1M5 LINE LINE
903 chr1.9039790.9041110 L2c LINE LINE
904 chr1.9039790.9041110 MIR SINE SINE
905 chr1.9065227.9065724 LTR56 LTR LTR
906 chr1.9065227.9065724 MamTip2 DNA DNA
907 chr1.9065227.9065724 MIR SINE SINE
908 chr1.9065227.9065724 AluJo SINE SINE
909 chr1.9071562.9071953 <NA> <NA> <NA>
910 chr1.9084852.9086268 MER5A1 DNA DNA
911 chr1.9084852.9086268 MER4E LTR LTR
912 chr1.9084852.9086268 LTR8B LTR LTR
913 chr1.9101491.9101991 <NA> <NA> <NA>
914 chr1.9105114.9105853 L2a LINE LINE
915 chr1.9110629.9111370 MIRb SINE SINE
916 chr1.9112795.9113308 MIR SINE SINE
917 chr1.9122044.9122488 L1MC4 LINE LINE
918 chr1.9127441.9129953 (GCCCAGA)n Other Simple_repeat
919 chr1.9127441.9129953 (GCCCCC)n Other Simple_repeat
920 chr1.9142246.9142602 Charlie4a DNA DNA
921 chr1.9142246.9142602 (TTCC)n Other Simple_repeat
922 chr1.9142246.9142602 AluSz SINE SINE
923 chr1.9144947.9145532 MER45A DNA DNA
924 chr1.9149616.9150202 <NA> <NA> <NA>
925 chr1.9162410.9163643 AluSp SINE SINE
926 chr1.9180301.9180508 L2a LINE LINE
927 chr1.9180301.9180508 L2a LINE LINE
928 chr1.9180904.9181743 MIRb SINE SINE
929 chr1.9181938.9183634 <NA> <NA> <NA>
930 chr1.9192638.9193134 <NA> <NA> <NA>
931 chr1.9194123.9194295 AluJb SINE SINE
932 chr1.9196279.9197075 MIR3 SINE SINE
933 chr1.9198502.9199034 (CGGG)n Other Simple_repeat
934 chr1.9201407.9202149 (CCCT)n Other Simple_repeat
935 chr1.9201407.9202149 (CCT)n Other Simple_repeat
936 chr1.9201407.9202149 (GCT)n Other Simple_repeat
937 chr1.9218021.9218368 MER124 Other DNA?
938 chr1.9231658.9231863 MIRc SINE SINE
939 chr1.9234126.9235450 MIR SINE SINE
940 chr1.9234126.9235450 (CCCCGC)n Other Simple_repeat
941 chr1.9238291.9238729 L2a LINE LINE
942 chr1.9244353.9244740 MIR SINE SINE
943 chr1.9249509.9250291 L3 LINE LINE
944 chr1.9250534.9250966 <NA> <NA> <NA>
945 chr1.9253745.9254044 MIR SINE SINE
946 chr1.9257606.9258245 L2b LINE LINE
947 chr1.9267118.9267562 AluSx1 SINE SINE
948 chr1.9269791.9270016 <NA> <NA> <NA>
949 chr1.9270585.9270753 <NA> <NA> <NA>
950 chr1.9271424.9271749 <NA> <NA> <NA>
951 chr1.9275254.9276051 MIR1_Amn SINE SINE
952 chr1.9280439.9280883 MIRc SINE SINE
953 chr1.9291775.9293316 (CGCGCCC)n Other Simple_repeat
954 chr1.9291775.9293316 (GGGGC)n Other Simple_repeat
955 chr1.9291775.9293316 (CAGGCGC)n Other Simple_repeat
956 chr1.9291775.9293316 (GCG)n Other Simple_repeat
957 chr1.9293468.9294597 (CGC)n Other Simple_repeat
958 chr1.9293468.9294597 (GT)n Other Simple_repeat
959 chr1.9294939.9295230 (GT)n Other Simple_repeat
960 chr1.9300041.9300527 ERVL-B4-int LTR LTR
961 chr1.9302960.9303658 ERVL-int LTR LTR
962 chr1.9315528.9316008 (AAAAC)n Other Simple_repeat
963 chr1.9321305.9321954 L2a LINE LINE
964 chr1.9322899.9323223 <NA> <NA> <NA>
965 chr1.9349901.9350815 (AC)n Other Simple_repeat
966 chr1.9349901.9350815 (GTGT)n Other Simple_repeat
967 chr1.9363166.9363440 <NA> <NA> <NA>
968 chr1.9366001.9366443 <NA> <NA> <NA>
969 chr1.9371461.9371942 <NA> <NA> <NA>
970 chr1.9375742.9376311 <NA> <NA> <NA>
971 chr1.9376761.9377343 <NA> <NA> <NA>
972 chr1.9384465.9385222 (CCCT)n Other Simple_repeat
973 chr1.9388884.9389076 MIRb SINE SINE
974 chr1.9400021.9401052 L2c LINE LINE
975 chr1.9410766.9411304 MIRb SINE SINE
976 chr1.9412968.9414073 L2b LINE LINE
977 chr1.9428542.9429446 Tigger15a DNA DNA
978 chr1.9428542.9429446 L2a LINE LINE
979 chr1.9435226.9435511 CR1-3_Croc LINE LINE
980 chr1.9435226.9435511 MIR3 SINE SINE
981 chr1.9443915.9444408 <NA> <NA> <NA>
982 chr1.9453426.9453868 <NA> <NA> <NA>
983 chr1.9455853.9456236 <NA> <NA> <NA>
984 chr1.9459693.9460381 MLT1E2 LTR LTR
985 chr1.9473074.9473537 (CCTCCAG)n Other Simple_repeat
986 chr1.9476858.9477138 L1MB5 LINE LINE
987 chr1.9476858.9477138 MLT1K LTR LTR
988 chr1.9477638.9478064 <NA> <NA> <NA>
989 chr1.9490984.9491386 FRAM SINE SINE
990 chr1.9490984.9491386 AluYk11 SINE SINE
991 chr1.9495120.9495971 GA-rich Other Low_complexity
992 chr1.9495120.9495971 L1MC1 LINE LINE
993 chr1.9529226.9529570 AluJo SINE SINE
994 chr1.9531182.9531560 MIR SINE SINE
995 chr1.9531182.9531560 MIRb SINE SINE
996 chr1.9531182.9531560 AluSx1 SINE SINE
997 chr1.9539178.9540403 (CGGCGA)n Other Simple_repeat
998 chr1.9546700.9547137 MLT1L LTR LTR
999 chr1.9555229.9555741 AluY SINE SINE
1000 chr1.9555229.9555741 AluSx SINE SINE
1001 chr1.9558114.9559473 MIRc SINE SINE
1002 chr1.9558114.9559473 L2a LINE LINE
1003 chr1.9558114.9559473 L2a LINE LINE
1004 chr1.9561524.9561783 <NA> <NA> <NA>
1005 chr1.9573654.9573896 Charlie4a DNA DNA
1006 chr1.9588430.9589673 (GCC)n Other Simple_repeat
1007 chr1.9588430.9589673 MIR SINE SINE
1008 chr1.9593464.9594195 MIR SINE SINE
1009 chr1.9615487.9615988 AluJb SINE SINE
1010 chr1.9626817.9627571 AluSx SINE SINE
1011 chr1.9626817.9627571 MIRb SINE SINE
1012 chr1.9640922.9641279 L2a LINE LINE
1013 chr1.9651608.9652515 <NA> <NA> <NA>
1014 chr1.9671409.9671745 FLAM_C SINE SINE
1015 chr1.9671409.9671745 AluJo SINE SINE
1016 chr1.9676875.9677246 <NA> <NA> <NA>
1017 chr1.9687212.9688546 G-rich Other Low_complexity
1018 chr1.9687212.9688546 MIRb SINE SINE
1019 chr1.9689079.9689750 <NA> <NA> <NA>
1020 chr1.9690010.9690404 <NA> <NA> <NA>
1021 chr1.9700315.9700673 L2a LINE LINE
1022 chr1.9702343.9702572 L3 LINE LINE
1023 chr1.9702343.9702572 AluSq SINE SINE
1024 chr1.9718966.9719704 (GCTGG)n Other Simple_repeat
1025 chr1.9718966.9719704 AluSx3 SINE SINE
1026 chr1.9721669.9722010 <NA> <NA> <NA>
1027 chr1.9724792.9725423 AluSp SINE SINE
1028 chr1.9752844.9753580 AluSx SINE SINE
1029 chr1.9752844.9753580 MER1B DNA DNA
1030 chr1.9752844.9753580 AluSp SINE SINE
1031 chr1.9755462.9755980 <NA> <NA> <NA>
1032 chr1.9759426.9760003 AluY SINE SINE
1033 chr1.9759426.9760003 MER58A DNA DNA
1034 chr1.9766620.9767228 AluSz6 SINE SINE
1035 chr1.9766620.9767228 MIRc SINE SINE
1036 chr1.9766620.9767228 L2a LINE LINE
1037 chr1.9766620.9767228 MIRb SINE SINE
1038 chr1.9792140.9792706 AluSx1 SINE SINE
1039 chr1.9796739.9797264 L3 LINE LINE
1040 chr1.9796739.9797264 FLAM_A SINE SINE
1041 chr1.9804512.9805286 Chap1_Mam DNA DNA
1042 chr1.9804512.9805286 AluJb SINE SINE
1043 chr1.9804512.9805286 AluSg SINE SINE
1044 chr1.9804512.9805286 Chap1_Mam DNA DNA
1045 chr1.9808901.9809581 AluSz SINE SINE
1046 chr1.9823034.9824784 G-rich Other Low_complexity
1047 chr1.9823034.9824784 (GCC)n Other Simple_repeat
1048 chr1.9825254.9825957 MIRb SINE SINE
1049 chr1.9835507.9836425 <NA> <NA> <NA>
1050 chr1.9848068.9848273 <NA> <NA> <NA>
1051 chr1.9861272.9861615 <NA> <NA> <NA>
1052 chr1.9867260.9867936 <NA> <NA> <NA>
1053 chr1.9872827.9873052 <NA> <NA> <NA>
1054 chr1.9874716.9875655 L2b LINE LINE
1055 chr1.9876952.9877329 <NA> <NA> <NA>
1056 chr1.9885968.9886679 MIR SINE SINE
1057 chr1.9885968.9886679 MER20 DNA DNA
1058 chr1.9885968.9886679 MIR1_Amn SINE SINE
1059 chr1.9890194.9890905 <NA> <NA> <NA>
1060 chr1.9898314.9898512 AluSc5 SINE SINE
1061 chr1.9900253.9900949 AluSc8 SINE SINE
1062 chr1.9904607.9904948 <NA> <NA> <NA>
1063 chr1.9910064.9911129 (GGGCG)n Other Simple_repeat
1064 chr1.9910064.9911129 (GGCGGA)n Other Simple_repeat
1065 chr1.9922034.9922938 AluSx SINE SINE
1066 chr1.9929390.9929862 MIR3 SINE SINE
1067 chr1.9942472.9943814 <NA> <NA> <NA>
1068 chr1.9950286.9950821 AluSx1 SINE SINE
1069 chr1.9950286.9950821 AluSz SINE SINE
1070 chr1.9960647.9961489 <NA> <NA> <NA>
1071 chr1.9996839.9998167 (CCCGC)n Other Simple_repeat
1072 chr1.9996839.9998167 (GGC)n Other Simple_repeat
1073 chr1.9996839.9998167 (AGGCGG)n Other Simple_repeat
1074 chr1.9996839.9998167 AluSx SINE SINE
1075 chr1.10006174.10006577 AluJb SINE SINE
1076 chr1.10006174.10006577 AluSz6 SINE SINE
1077 chr1.10015577.10016316 AluJb SINE SINE
1078 chr1.10015577.10016316 (TTTCT)n Other Simple_repeat
1079 chr1.10015577.10016316 AluSx SINE SINE
1080 chr1.10031572.10031805 <NA> <NA> <NA>
1081 chr1.10032446.10033841 G-rich Other Low_complexity
1082 chr1.10045089.10045717 MER1A DNA DNA
1083 chr1.10045089.10045717 Kanga1c DNA DNA
1084 chr1.10045089.10045717 L2a LINE LINE
1085 chr1.10046067.10046857 MLT1J LTR LTR
1086 chr1.10046067.10046857 MLT1J-int LTR LTR
1087 chr1.10046067.10046857 MLT1J-int LTR LTR
1088 chr1.10046067.10046857 MLT1J-int LTR LTR
1089 chr1.10052481.10052748 MER45A DNA DNA
1090 chr1.10055806.10056073 AluSz SINE SINE
1091 chr1.10055806.10056073 (AAAAC)n Other Simple_repeat
1092 chr1.10057444.10057924 AluJo SINE SINE
1093 chr1.10057444.10057924 AluJb SINE SINE
1094 chr1.10064528.10064695 MLT1O LTR LTR
1095 chr1.10064528.10064695 L2 LINE LINE
1096 chr1.10066780.10067303 AluSx1 SINE SINE
1097 chr1.10074096.10075005 FAM SINE SINE
1098 chr1.10074096.10075005 L2a LINE LINE
1099 chr1.10082728.10083673 L1PA8 LINE LINE
1100 chr1.10082728.10083673 L2a LINE LINE
1101 chr1.10084993.10085478 AluSx3 SINE SINE
1102 chr1.10108148.10108997 (GT)n Other Simple_repeat
1103 chr1.10117804.10118389 L2a LINE LINE
1104 chr1.10117804.10118389 MIR SINE SINE
1105 chr1.10117804.10118389 MIR SINE SINE
1106 chr1.10117804.10118389 (TTCATT)n Other Simple_repeat
1107 chr1.10117804.10118389 AluSx1 SINE SINE
1108 chr1.10123007.10123404 AluSx1 SINE SINE
1109 chr1.10152849.10153194 LTR50 LTR LTR
1110 chr1.10152849.10153194 LTR50 LTR LTR
1111 chr1.10154733.10155718 AluSq2 SINE SINE
1112 chr1.10154733.10155718 L1ME4a LINE LINE
1113 chr1.10154733.10155718 (GA)n Other Simple_repeat
1114 chr1.10154733.10155718 (GT)n Other Simple_repeat
1115 chr1.10154733.10155718 MIR SINE SINE
1116 chr1.10165230.10165645 L2a LINE LINE
1117 chr1.10195586.10195923 AluJo SINE SINE
1118 chr1.10195586.10195923 AluJb SINE SINE
1119 chr1.10195586.10195923 AluSc SINE SINE
1120 chr1.10204189.10204791 AluSq2 SINE SINE
1121 chr1.10209805.10212197 (CACCGCC)n Other Simple_repeat
1122 chr1.10225669.10225934 <NA> <NA> <NA>
1123 chr1.10228610.10228838 <NA> <NA> <NA>
1124 chr1.10253509.10254193 AluJo SINE SINE
1125 chr1.10253509.10254193 MIR SINE SINE
1126 chr1.10259626.10260411 AluSx1 SINE SINE
1127 chr1.10259626.10260411 AluJb SINE SINE
1128 chr1.10259626.10260411 Tigger3b DNA DNA
1129 chr1.10283091.10283834 AluY SINE SINE
1130 chr1.10286087.10286739 AluSx SINE SINE
1131 chr1.10289219.10289578 L2a LINE LINE
1132 chr1.10304137.10304650 <NA> <NA> <NA>
1133 chr1.10337444.10337778 <NA> <NA> <NA>
1134 chr1.10338031.10338308 <NA> <NA> <NA>
1135 chr1.10339686.10340095 <NA> <NA> <NA>
1136 chr1.10377284.10377859 AluSg SINE SINE
1137 chr1.10378318.10378842 <NA> <NA> <NA>
1138 chr1.10385734.10386028 L2a LINE LINE
1139 chr1.10385734.10386028 AluSx1 SINE SINE
1140 chr1.10387716.10388013 <NA> <NA> <NA>
1141 chr1.10398462.10399999 <NA> <NA> <NA>
1142 chr1.10403620.10404012 <NA> <NA> <NA>
1143 chr1.10415310.10415675 <NA> <NA> <NA>
1144 chr1.10419307.10419934 AluSx3 SINE SINE
1145 chr1.10420538.10420912 AluY SINE SINE
1146 chr1.10428136.10428278 MIR SINE SINE
1147 chr1.10430118.10431279 L2a LINE LINE
1148 chr1.10430118.10431279 MIRb SINE SINE
1149 chr1.10438435.10439220 AluSx1 SINE SINE
1150 chr1.10444786.10445301 MIRb SINE SINE
1151 chr1.10444786.10445301 AluJo SINE SINE
1152 chr1.10450223.10450657 <NA> <NA> <NA>
1153 chr1.10456756.10457209 AluJr4 SINE SINE
1154 chr1.10458997.10459542 AluSx3 SINE SINE
1155 chr1.10471814.10472846 MIRb SINE SINE
1156 chr1.10474807.10475779 (GCCCC)n Other Simple_repeat
1157 chr1.10494594.10495781 <NA> <NA> <NA>
1158 chr1.10507267.10507730 <NA> <NA> <NA>
1159 chr1.10508680.10509172 AluY SINE SINE
1160 chr1.10510633.10511123 L2c LINE LINE
1161 chr1.10518891.10519685 <NA> <NA> <NA>
1162 chr1.10528163.10528957 <NA> <NA> <NA>
1163 chr1.10530388.10531178 <NA> <NA> <NA>
1164 chr1.10539212.10539988 UCON14 Other DNA?
1165 chr1.10546889.10547218 LTR67B LTR LTR
1166 chr1.10546889.10547218 LTR67B LTR LTR
1167 chr1.10550016.10550587 L2b LINE LINE
1168 chr1.10550016.10550587 L2b LINE LINE
1169 chr1.10555802.10556635 <NA> <NA> <NA>
1170 chr1.10575758.10575925 L1M5 LINE LINE
1171 chr1.10591580.10592223 L1ME4b LINE LINE
1172 chr1.10591580.10592223 (TG)n Other Simple_repeat
1173 chr1.10599235.10599833 <NA> <NA> <NA>
1174 chr1.10606104.10606521 MLT1J LTR LTR
1175 chr1.10606104.10606521 L1ME3F LINE LINE
1176 chr1.10612511.10613186 MamRTE1 LINE LINE
1177 chr1.10639524.10641887 AmnSINE1 SINE SINE
1178 chr1.10646406.10646610 <NA> <NA> <NA>
1179 chr1.10649030.10649676 <NA> <NA> <NA>
1180 chr1.10651474.10651746 <NA> <NA> <NA>
1181 chr1.10657176.10657647 (TAA)n Other Simple_repeat
1182 chr1.10662464.10663167 (AC)n Other Simple_repeat
1183 chr1.10663302.10664208 G-rich Other Low_complexity
1184 chr1.10676833.10677719 <NA> <NA> <NA>
1185 chr1.10679527.10680000 <NA> <NA> <NA>
1186 chr1.10680631.10680806 <NA> <NA> <NA>
1187 chr1.10685713.10686557 <NA> <NA> <NA>
1188 chr1.10691598.10692762 (TGGA)n Other Simple_repeat
1189 chr1.10693957.10695473 (CGCCCGC)n Other Simple_repeat
1190 chr1.10693957.10695473 (GCGG)n Other Simple_repeat
1191 chr1.10693957.10695473 (CGGCCC)n Other Simple_repeat
1192 chr1.10693957.10695473 (CCG)n Other Simple_repeat
1193 chr1.10693957.10695473 (GCGCCC)n Other Simple_repeat
1194 chr1.10693957.10695473 (CCGCTGC)n Other Simple_repeat
1195 chr1.10700119.10700546 <NA> <NA> <NA>
1196 chr1.10704037.10705189 <NA> <NA> <NA>
1197 chr1.10705793.10706383 <NA> <NA> <NA>
1198 chr1.10714390.10714982 MIR SINE SINE
1199 chr1.10716459.10717946 (T)n Other Simple_repeat
1200 chr1.10716459.10717946 (CCCTGC)n Other Simple_repeat
1201 chr1.10720411.10720918 <NA> <NA> <NA>
1202 chr1.10723738.10724622 <NA> <NA> <NA>
1203 chr1.10731035.10731573 AluSg SINE SINE
1204 chr1.10731035.10731573 Charlie1a DNA DNA
1205 chr1.10731035.10731573 AluJb SINE SINE
1206 chr1.10734069.10734226 <NA> <NA> <NA>
1207 chr1.10735346.10735829 <NA> <NA> <NA>
1208 chr1.10736684.10737808 L2c LINE LINE
1209 chr1.10736684.10737808 L2c LINE LINE
1210 chr1.10744722.10745520 MER45A DNA DNA
1211 chr1.10745899.10746202 MIRb SINE SINE
1212 chr1.10745899.10746202 MIR1_Amn SINE SINE
1213 chr1.10755868.10756634 <NA> <NA> <NA>
1214 chr1.10786277.10786685 MIRb SINE SINE
1215 chr1.10788609.10789048 <NA> <NA> <NA>
1216 chr1.10793772.10795921 (GT)n Other Simple_repeat
1217 chr1.10793772.10795921 (CCGC)n Other Simple_repeat
1218 chr1.10796200.10796893 (CGCT)n Other Simple_repeat
1219 chr1.10803047.10803441 <NA> <NA> <NA>
1220 chr1.10820375.10820914 MIR3 SINE SINE
1221 chr1.10820375.10820914 G-rich Other Low_complexity
1222 chr1.10820375.10820914 AluSx1 SINE SINE
1223 chr1.10824851.10825236 (GCCCCAC)n Other Simple_repeat
1224 chr1.10835885.10836301 <NA> <NA> <NA>
1225 chr1.10837261.10837664 MIR3 SINE SINE
1226 chr1.10856919.10857278 <NA> <NA> <NA>
1227 chr1.10857484.10857953 (TC)n Other Simple_repeat
1228 chr1.10861887.10862229 <NA> <NA> <NA>
1229 chr1.10866506.10867556 (CCCCGC)n Other Simple_repeat
1230 chr1.10866506.10867556 G-rich Other Low_complexity
1231 chr1.10880208.10880524 L2a LINE LINE
1232 chr1.10880208.10880524 AluJb SINE SINE
1233 chr1.10901485.10902119 <NA> <NA> <NA>
1234 chr1.10909906.10910341 MIRb SINE SINE
1235 chr1.10910544.10911531 MIR SINE SINE
1236 chr1.10910544.10911531 (CA)n Other Simple_repeat
1237 chr1.10941930.10942358 <NA> <NA> <NA>
1238 chr1.10952065.10952262 L2c LINE LINE
1239 chr1.10957098.10957811 <NA> <NA> <NA>
1240 chr1.10960938.10961489 <NA> <NA> <NA>
1241 chr1.10962411.10962914 AluSz SINE SINE
1242 chr1.10962411.10962914 MER102b DNA DNA
1243 chr1.10962411.10962914 MIR SINE SINE
1244 chr1.10962411.10962914 AluJr SINE SINE
1245 chr1.10975546.10976307 AluSx3 SINE SINE
1246 chr1.10975546.10976307 MIRb SINE SINE
1247 chr1.10975546.10976307 MIR SINE SINE
1248 chr1.10980136.10980621 G-rich Other Low_complexity
1249 chr1.11012053.11013486 MIR SINE SINE
1250 chr1.11012053.11013486 (GCCCC)n Other Simple_repeat
1251 chr1.11012053.11013486 L2c LINE LINE
1252 chr1.11037695.11038229 MIRb SINE SINE
1253 chr1.11053740.11054397 <NA> <NA> <NA>
1254 chr1.11059089.11060760 (CCCCAG)n Other Simple_repeat
1255 chr1.11059089.11060760 G-rich Other Low_complexity
1256 chr1.11059089.11060760 G-rich Other Low_complexity
1257 chr1.11099081.11100161 Charlie29a DNA DNA
1258 chr1.11099081.11100161 MIRc SINE SINE
1259 chr1.11134069.11134684 AluJo SINE SINE
1260 chr1.11135016.11135182 <NA> <NA> <NA>
1261 chr1.11143837.11144249 MER5B DNA DNA
1262 chr1.11152054.11152634 U6 Other snRNA
1263 chr1.11158559.11159454 AluSp SINE SINE
1264 chr1.11176139.11176939 <NA> <NA> <NA>
1265 chr1.11178044.11178624 L1ME4c LINE LINE
1266 chr1.11187464.11188227 MER1B DNA DNA
1267 chr1.11189095.11189376 <NA> <NA> <NA>
1268 chr1.11194396.11194815 (CAAGGA)n Other Simple_repeat
1269 chr1.11236696.11237624 AluSx1 SINE SINE
1270 chr1.11241428.11242164 MIRb SINE SINE
1271 chr1.11241428.11242164 MER91B DNA DNA
1272 chr1.11241428.11242164 AluSx SINE SINE
1273 chr1.11254574.11255110 MIRc SINE SINE
1274 chr1.11254574.11255110 Kanga1c DNA DNA
1275 chr1.11254574.11255110 AluJo SINE SINE
1276 chr1.11254574.11255110 Kanga1b DNA DNA
1277 chr1.11254574.11255110 AluSc SINE SINE
1278 chr1.11262074.11262931 <NA> <NA> <NA>
1279 chr1.11272652.11274132 MER63C DNA DNA
1280 chr1.11272652.11274132 L2c LINE LINE
1281 chr1.11272652.11274132 (CCGCC)n Other Simple_repeat
1282 chr1.11287053.11287231 <NA> <NA> <NA>
1283 chr1.11289066.11289238 CR1-8_Crp LINE LINE
1284 chr1.11292559.11293112 (AC)n Other Simple_repeat
1285 chr1.11320129.11320573 <NA> <NA> <NA>
1286 chr1.11321704.11322348 L2c LINE LINE
1287 chr1.11321704.11322348 (CT)n Other Simple_repeat
1288 chr1.11331503.11332009 MIRb SINE SINE
1289 chr1.11331503.11332009 L2a LINE LINE
1290 chr1.11333723.11333925 <NA> <NA> <NA>
1291 chr1.11337157.11337958 (AT)n Other Simple_repeat
1292 chr1.11337157.11337958 (TACAC)n Other Simple_repeat
1293 chr1.11337157.11337958 (AT)n Other Simple_repeat
1294 chr1.11339986.11340191 <NA> <NA> <NA>
1295 chr1.11373026.11374470 MIRc SINE SINE
1296 chr1.11373026.11374470 (TG)n Other Simple_repeat
1297 chr1.11374579.11375152 AluSx SINE SINE
1298 chr1.11375476.11376052 MIR SINE SINE
1299 chr1.11384288.11384483 ERV3-16A3_I-int LTR LTR
1300 chr1.11387423.11388007 MIRb SINE SINE
1301 chr1.11387423.11388007 (CTCC)n Other Simple_repeat
1302 chr1.11450952.11451249 MER91B DNA DNA
1303 chr1.11450952.11451249 MIR1_Amn SINE SINE
1304 chr1.11473628.11473887 AluJb SINE SINE
1305 chr1.11478625.11479832 <NA> <NA> <NA>
1306 chr1.11480004.11480724 (CA)n Other Simple_repeat
1307 chr1.11535739.11536173 MIR3 SINE SINE
1308 chr1.11540333.11540671 <NA> <NA> <NA>
1309 chr1.11550582.11551077 <NA> <NA> <NA>
1310 chr1.11563441.11564219 L1ME4c LINE LINE
1311 chr1.11563441.11564219 AluJb SINE SINE
1312 chr1.11572041.11573168 MIR SINE SINE
1313 chr1.11572041.11573168 Ricksha_c DNA DNA
1314 chr1.11594141.11594623 <NA> <NA> <NA>
1315 chr1.11615151.11615627 MIRc SINE SINE
1316 chr1.11615151.11615627 AluJb SINE SINE
1317 chr1.11635861.11636411 AluY SINE SINE
1318 chr1.11642342.11642686 <NA> <NA> <NA>
1319 chr1.11645646.11646309 AluJr SINE SINE
1320 chr1.11645646.11646309 L3 LINE LINE
1321 chr1.11645646.11646309 MIR SINE SINE
1322 chr1.11650481.11650936 (CCT)n Other Simple_repeat
1323 chr1.11653182.11654958 (CCCCG)n Other Simple_repeat
1324 chr1.11653182.11654958 (GCGGG)n Other Simple_repeat
1325 chr1.11663802.11665173 AluSz6 SINE SINE
1326 chr1.11663802.11665173 AluJb SINE SINE
1327 chr1.11680398.11681872 MIR SINE SINE
1328 chr1.11690799.11691140 (GT)n Other Simple_repeat
1329 chr1.11690799.11691140 (GCCCC)n Other Simple_repeat
1330 chr1.11702043.11702625 (CA)n Other Simple_repeat
1331 chr1.11707422.11708342 MIRc SINE SINE
1332 chr1.11707422.11708342 MIR SINE SINE
1333 chr1.11707422.11708342 MIR3 SINE SINE
1334 chr1.11707422.11708342 MIRb SINE SINE
1335 chr1.11707422.11708342 AluSz SINE SINE
1336 chr1.11719286.11720243 L1MC2 LINE LINE
1337 chr1.11719286.11720243 MIRb SINE SINE
1338 chr1.11729630.11730301 (GCACAT)n Other Simple_repeat
1339 chr1.11735651.11737279 MER31B LTR LTR
1340 chr1.11735651.11737279 MIR SINE SINE
1341 chr1.11749014.11749564 (CT)n Other Simple_repeat
1342 chr1.11749014.11749564 MIRc SINE SINE
1343 chr1.11753631.11754225 L2 LINE LINE
1344 chr1.11753631.11754225 THE1B LTR LTR
1345 chr1.11761836.11762281 <NA> <NA> <NA>
1346 chr1.11784902.11785551 <NA> <NA> <NA>
1347 chr1.11787250.11787950 <NA> <NA> <NA>
1348 chr1.11790518.11791307 (AC)n Other Simple_repeat
1349 chr1.11792123.11792871 L2c LINE LINE
1350 chr1.11792123.11792871 MIRc SINE SINE
1351 chr1.11796465.11796702 <NA> <NA> <NA>
1352 chr1.11800837.11801034 <NA> <NA> <NA>
1353 chr1.11802830.11803983 <NA> <NA> <NA>
1354 chr1.11805169.11806733 (CTG)n Other Simple_repeat
1355 chr1.11821319.11821987 AluSz SINE SINE
1356 chr1.11821319.11821987 L1ME3E LINE LINE
1357 chr1.11821319.11821987 L1ME3E LINE LINE
1358 chr1.11822017.11822474 L1ME3E LINE LINE
1359 chr1.11822017.11822474 L1ME3Cz LINE LINE
1360 chr1.11822017.11822474 AluJb SINE SINE
1361 chr1.11838191.11838954 MIRb SINE SINE
1362 chr1.11841111.11841466 <NA> <NA> <NA>
1363 chr1.11842094.11842694 <NA> <NA> <NA>
1364 chr1.11847529.11848549 <NA> <NA> <NA>
1365 chr1.11856543.11857244 MIRb SINE SINE
1366 chr1.11856543.11857244 UCON132b DNA DNA
1367 chr1.11858639.11859904 (GCT)n Other Simple_repeat
1368 chr1.11858639.11859904 AluYc SINE SINE
1369 chr1.11869747.11869969 <NA> <NA> <NA>
1370 chr1.11874138.11874585 <NA> <NA> <NA>
1371 chr1.11880918.11881370 MIR SINE SINE
1372 chr1.11880918.11881370 (CCCCT)n Other Simple_repeat
1373 chr1.11882836.11883489 (CTCCT)n Other Simple_repeat
1374 chr1.11887215.11887571 <NA> <NA> <NA>
1375 chr1.11893667.11894355 MIRb SINE SINE
1376 chr1.11893667.11894355 (GGAT)n Other Simple_repeat
1377 chr1.11898810.11899496 <NA> <NA> <NA>
1378 chr1.11907777.11909810 U5 Other snRNA
1379 chr1.11907777.11909810 MER1B DNA DNA
1380 chr1.11907777.11909810 MLT1J LTR LTR
1381 chr1.11907777.11909810 AluSx SINE SINE
1382 chr1.11907777.11909810 (GCCCCGCCGT)n Other Simple_repeat
1383 chr1.11907777.11909810 U5 Other snRNA
1384 chr1.11918791.11919336 <NA> <NA> <NA>
1385 chr1.11925787.11926874 (CCGC)n Other Simple_repeat
1386 chr1.11925787.11926874 (CGCC)n Other Simple_repeat
1387 chr1.11925787.11926874 G-rich Other Low_complexity
1388 chr1.11925787.11926874 (AC)n Other Simple_repeat
1389 chr1.11925787.11926874 AluSg SINE SINE
1390 chr1.11934290.11935185 MIR SINE SINE
1391 chr1.11934290.11935185 (GGCGG)n Other Simple_repeat
1392 chr1.11934290.11935185 (TGC)n Other Simple_repeat
1393 chr1.11934290.11935185 MIR3 SINE SINE
1394 chr1.11934290.11935185 MIR SINE SINE
1395 chr1.11944178.11944871 AluSx1 SINE SINE
1396 chr1.11944178.11944871 MIR SINE SINE
1397 chr1.11944178.11944871 (AC)n Other Simple_repeat
1398 chr1.11966743.11967498 <NA> <NA> <NA>
1399 chr1.11979632.11981016 MER33 DNA DNA
1400 chr1.11979632.11981016 L2c LINE LINE
1401 chr1.11989732.11990112 Charlie15a DNA DNA
1402 chr1.11990456.11991507 L2c LINE LINE
1403 chr1.11990456.11991507 L2c LINE LINE
1404 chr1.11996411.11996768 AluSx1 SINE SINE
1405 chr1.12001883.12002594 AluJr4 SINE SINE
1406 chr1.12005392.12005924 <NA> <NA> <NA>
1407 chr1.12014551.12015222 L2a LINE LINE
1408 chr1.12014551.12015222 AluSg SINE SINE
1409 chr1.12019153.12020196 MIR SINE SINE
1410 chr1.12030835.12031987 MIRb SINE SINE
1411 chr1.12032039.12032470 <NA> <NA> <NA>
1412 chr1.12038619.12039354 MIR SINE SINE
1413 chr1.12040666.12040849 LTR64 LTR LTR
1414 chr1.12046700.12047282 (AC)n Other Simple_repeat
1415 chr1.12051872.12052515 L2b LINE LINE
1416 chr1.12063217.12063533 <NA> <NA> <NA>
1417 chr1.12067650.12068562 AluSx1 SINE SINE
1418 chr1.12067650.12068562 MamTip2 DNA DNA
1419 chr1.12067650.12068562 MIR3 SINE SINE
1420 chr1.12069578.12069999 L3 LINE LINE
1421 chr1.12069578.12069999 L2b LINE LINE
1422 chr1.12075640.12076160 MLT1D LTR LTR
1423 chr1.12075640.12076160 LTR19A LTR LTR
1424 chr1.12075640.12076160 AluSp SINE SINE
1425 chr1.12076523.12076909 <NA> <NA> <NA>
1426 chr1.12118688.12119064 LTR41B LTR LTR
1427 chr1.12118688.12119064 AluSg SINE SINE
1428 chr1.12124730.12125430 AluSg SINE SINE
1429 chr1.12124730.12125430 (AAACA)n Other Simple_repeat
1430 chr1.12124730.12125430 MER5A1 DNA DNA
1431 chr1.12124730.12125430 MIR SINE SINE
1432 chr1.12125506.12126438 <NA> <NA> <NA>
1433 chr1.12148286.12148621 MIRc SINE SINE
1434 chr1.12148286.12148621 MIRc SINE SINE
1435 chr1.12153437.12153711 <NA> <NA> <NA>
1436 chr1.12159942.12160094 L2a LINE LINE
1437 chr1.12161734.12162379 MER5A1 DNA DNA
1438 chr1.12178042.12178437 MIRb SINE SINE
1439 chr1.12178042.12178437 MIR SINE SINE
1440 chr1.12184193.12184666 <NA> <NA> <NA>
1441 chr1.12186090.12186451 L2b LINE LINE
1442 chr1.12208561.12209395 FRAM SINE SINE
1443 chr1.12229711.12231412 L2a LINE LINE
1444 chr1.12243760.12244107 <NA> <NA> <NA>
1445 chr1.12249114.12249525 <NA> <NA> <NA>
1446 chr1.12272053.12272362 AluJo SINE SINE
1447 chr1.12272053.12272362 MamRTE1 LINE LINE
1448 chr1.12276366.12276663 <NA> <NA> <NA>
1449 chr1.12279856.12280358 <NA> <NA> <NA>
1450 chr1.12290685.12291266 AluY SINE SINE
1451 chr1.12301570.12302098 MER21C LTR LTR
1452 chr1.12301570.12302098 Tigger3a DNA DNA
1453 chr1.12305330.12305797 AluJb SINE SINE
1454 chr1.12319983.12320391 <NA> <NA> <NA>
1455 chr1.12338065.12338486 <NA> <NA> <NA>
1456 chr1.12342400.12343003 <NA> <NA> <NA>
1457 chr1.12359830.12360350 L3b LINE LINE
1458 chr1.12376614.12376928 MIR SINE SINE
1459 chr1.12376614.12376928 MIR SINE SINE
1460 chr1.12397501.12398002 L2a LINE LINE
1461 chr1.12405372.12406862 MER102b DNA DNA
1462 chr1.12405372.12406862 MIRc SINE SINE
1463 chr1.12433415.12434496 (GA)n Other Simple_repeat
1464 chr1.12433415.12434496 (TG)n Other Simple_repeat
1465 chr1.12433415.12434496 (GGA)n Other Simple_repeat
1466 chr1.12435702.12435967 MIR SINE SINE
1467 chr1.12450542.12450719 MER47B DNA DNA
1468 chr1.12451201.12451682 <NA> <NA> <NA>
1469 chr1.12453836.12454936 MIR3 SINE SINE
1470 chr1.12453836.12454936 MIRb SINE SINE
1471 chr1.12460105.12460442 <NA> <NA> <NA>
1472 chr1.12460813.12461485 <NA> <NA> <NA>
1473 chr1.12472791.12473184 MamRep434 DNA DNA
1474 chr1.12475407.12475755 <NA> <NA> <NA>
1475 chr1.12477979.12478767 <NA> <NA> <NA>
1476 chr1.12480818.12481221 <NA> <NA> <NA>
1477 chr1.12486323.12487022 L2a LINE LINE
1478 chr1.12488761.12488965 <NA> <NA> <NA>
1479 chr1.12495716.12496886 (CCAGGT)n Other Simple_repeat
1480 chr1.12501734.12502042 L2c LINE LINE
1481 chr1.12505968.12506184 <NA> <NA> <NA>
1482 chr1.12511561.12512409 AluY SINE SINE
1483 chr1.12514703.12514938 L1ME3F LINE LINE
1484 chr1.12514703.12514938 L1ME3F LINE LINE
1485 chr1.12529346.12529729 L1ME4b LINE LINE
1486 chr1.12540006.12540788 MIRb SINE SINE
1487 chr1.12541120.12541430 MIRb SINE SINE
1488 chr1.12549864.12550320 AluJr SINE SINE
1489 chr1.12552953.12553717 L2 LINE LINE
1490 chr1.12556350.12556896 MIRb SINE SINE
1491 chr1.12559152.12559429 <NA> <NA> <NA>
1492 chr1.12572310.12573324 AluY SINE SINE
1493 chr1.12572310.12573324 Charlie1b DNA DNA
1494 chr1.12572310.12573324 MER117 DNA DNA
1495 chr1.12572310.12573324 L2b LINE LINE
1496 chr1.12573772.12574290 MIRc SINE SINE
1497 chr1.12573772.12574290 AluJb SINE SINE
1498 chr1.12584820.12586190 (TG)n Other Simple_repeat
1499 chr1.12584820.12586190 MIRb SINE SINE
1500 chr1.12594920.12595465 L2a LINE LINE
1501 chr1.12594920.12595465 G-rich Other Low_complexity
1502 chr1.12595714.12596777 MIRb SINE SINE
1503 chr1.12603843.12604732 Charlie4z DNA DNA
1504 chr1.12603843.12604732 MIRb SINE SINE
1505 chr1.12615994.12616788 <NA> <NA> <NA>
1506 chr1.12618012.12620097 (CGCT)n Other Simple_repeat
1507 chr1.12618012.12620097 MER5A DNA DNA
1508 chr1.12636532.12636952 G-rich Other Low_complexity
1509 chr1.12658588.12659396 MER41E LTR LTR
1510 chr1.12658588.12659396 L2a LINE LINE
1511 chr1.12658588.12659396 (TGAA)n Other Simple_repeat
1512 chr1.12658588.12659396 L2b LINE LINE
1513 chr1.12851820.12852301 LTR45B LTR LTR
1514 chr1.12851820.12852301 AluSg SINE SINE
1515 chr1.12851820.12852301 LTR45B LTR LTR
1516 chr1.12851820.12852301 AluSg SINE SINE
1517 chr1.13469425.13469972 <NA> <NA> <NA>
1518 chr1.13487482.13488060 (TG)n Other Simple_repeat
1519 chr1.13492652.13493091 AluSx1 SINE SINE
1520 chr1.13505125.13505396 <NA> <NA> <NA>
1521 chr1.13512472.13512810 <NA> <NA> <NA>
1522 chr1.13512997.13513524 <NA> <NA> <NA>
1523 chr1.13517342.13517476 <NA> <NA> <NA>
1524 chr1.13536609.13537063 MER21C LTR LTR
1525 chr1.13540206.13540364 MIR SINE SINE
1526 chr1.13540974.13541212 <NA> <NA> <NA>
1527 chr1.13543536.13544366 A-rich Other Low_complexity
1528 chr1.13549001.13549476 MSTD LTR LTR
1529 chr1.13550620.13550919 L1MEd LINE LINE
1530 chr1.13583646.13584771 <NA> <NA> <NA>
1531 chr1.13587302.13587943 (GGA)n Other Simple_repeat
1532 chr1.13593552.13594186 <NA> <NA> <NA>
1533 chr1.13600931.13601634 MER31B LTR LTR
1534 chr1.13600931.13601634 AluSz6 SINE SINE
1535 chr1.13617417.13618157 AluSc SINE SINE
1536 chr1.13619947.13620269 <NA> <NA> <NA>
1537 chr1.13652284.13652604 AluSg SINE SINE
1538 chr1.13665482.13666457 AluSx1 SINE SINE
1539 chr1.13665482.13666457 MER81 DNA DNA
1540 chr1.13665482.13666457 MIRb SINE SINE
1541 chr1.13699515.13701050 L2 LINE LINE
1542 chr1.13699515.13701050 (GT)n Other Simple_repeat
1543 chr1.13725712.13726267 Charlie1 DNA DNA
1544 chr1.13725712.13726267 MIR SINE SINE
1545 chr1.13725712.13726267 MIR SINE SINE
1546 chr1.13725712.13726267 MIRb SINE SINE
1547 chr1.13748724.13750074 (CCGG)n Other Simple_repeat
1548 chr1.13748724.13750074 (CGC)n Other Simple_repeat
1549 chr1.13748724.13750074 (GCCC)n Other Simple_repeat
1550 chr1.13757385.13758342 (T)n Other Simple_repeat
1551 chr1.13757385.13758342 AluSx1 SINE SINE
1552 chr1.13764595.13765532 AluSg SINE SINE
1553 chr1.13783343.13783962 MIR1_Amn SINE SINE
1554 chr1.13792523.13792994 MIR SINE SINE
1555 chr1.13801020.13801527 MER103C DNA DNA
1556 chr1.13801020.13801527 MIR SINE SINE
1557 chr1.13808883.13809194 MER5B DNA DNA
1558 chr1.13808883.13809194 L2a LINE LINE
1559 chr1.13811249.13811655 L2c LINE LINE
1560 chr1.13813739.13813895 <NA> <NA> <NA>
1561 chr1.13828628.13829247 (GTGAG)n Other Simple_repeat
1562 chr1.13830728.13831222 <NA> <NA> <NA>
1563 chr1.13892325.13893448 (GCGCCGC)n Other Simple_repeat
1564 chr1.13960377.13960837 <NA> <NA> <NA>
1565 chr1.13965877.13966399 LTR80A LTR LTR
1566 chr1.13965877.13966399 (CTCC)n Other Simple_repeat
1567 chr1.14095064.14095275 MER20 DNA DNA
1568 chr1.14095064.14095275 MamRep137 DNA DNA
1569 chr1.14098494.14098892 <NA> <NA> <NA>
1570 chr1.14113776.14114377 MIRb SINE SINE
1571 chr1.14119259.14119921 MIR SINE SINE
1572 chr1.14190477.14190953 MLT1H LTR LTR
1573 chr1.14190477.14190953 MLT1H LTR LTR
1574 chr1.14214796.14215486 L2c LINE LINE
1575 chr1.14268086.14268327 MIR SINE SINE
1576 chr1.14281440.14281743 <NA> <NA> <NA>
1577 chr1.14296544.14297190 AluSx3 SINE SINE
1578 chr1.14296544.14297190 (TG)n Other Simple_repeat
1579 chr1.14296544.14297190 MLT1H2 LTR LTR
1580 chr1.14332280.14332581 L1ME3F LINE LINE
1581 chr1.14346104.14346490 <NA> <NA> <NA>
1582 chr1.14366189.14366610 LTR1D1 LTR LTR
1583 chr1.14436922.14437441 MIRb SINE SINE
1584 chr1.14479837.14480379 L2c LINE LINE
1585 chr1.14492665.14493463 (CA)n Other Simple_repeat
1586 chr1.14492665.14493463 L2a LINE LINE
1587 chr1.14492665.14493463 LTR79 LTR LTR
1588 chr1.14515230.14515572 MIR SINE SINE
1589 chr1.14515230.14515572 L2c LINE LINE
1590 chr1.14560922.14561472 MLT1M LTR LTR
1591 chr1.14560922.14561472 MLT1M LTR LTR
1592 chr1.14597723.14599720 (CTC)n Other Simple_repeat
1593 chr1.14597723.14599720 (CCG)n Other Simple_repeat
1594 chr1.14597723.14599720 (GCG)n Other Simple_repeat
1595 chr1.14602294.14602445 <NA> <NA> <NA>
1596 chr1.14605908.14607036 MIRc SINE SINE
1597 chr1.14605908.14607036 MIR SINE SINE
1598 chr1.14605908.14607036 MIRb SINE SINE
1599 chr1.14605908.14607036 MER20 DNA DNA
1600 chr1.14605908.14607036 L2a LINE LINE
1601 chr1.14612228.14612638 tRNA-Thr-ACA Other tRNA
1602 chr1.14612228.14612638 MIRc SINE SINE
1603 chr1.14612228.14612638 MIR3 SINE SINE
1604 chr1.14612228.14612638 MIRb SINE SINE
1605 chr1.14612228.14612638 MER20 DNA DNA
1606 chr1.14617671.14618305 MIR3 SINE SINE
1607 chr1.14627073.14628200 L2a LINE LINE
1608 chr1.14627073.14628200 L2b LINE LINE
1609 chr1.14627073.14628200 (CT)n Other Simple_repeat
1610 chr1.14634544.14634858 <NA> <NA> <NA>
1611 chr1.14649430.14649785 MIR SINE SINE
1612 chr1.14653712.14654119 MIR SINE SINE
1613 chr1.14653712.14654119 L2a LINE LINE
1614 chr1.14653712.14654119 MER20 DNA DNA
1615 chr1.14653712.14654119 AluSq2 SINE SINE
1616 chr1.14677400.14677908 <NA> <NA> <NA>
1617 chr1.14683055.14683409 L2b LINE LINE
1618 chr1.14731711.14732612 MIR SINE SINE
1619 chr1.14731711.14732612 MIR SINE SINE
1620 chr1.14731711.14732612 MER119 DNA DNA
1621 chr1.14731711.14732612 AluSz SINE SINE
1622 chr1.14732908.14733703 <NA> <NA> <NA>
1623 chr1.14742130.14742846 L2a LINE LINE
1624 chr1.14742130.14742846 L2b LINE LINE
1625 chr1.14742130.14742846 L2a LINE LINE
1626 chr1.14742130.14742846 (TGAA)n Other Simple_repeat
1627 chr1.14782777.14783534 L2c LINE LINE
1628 chr1.14802585.14803093 MER20 DNA DNA
1629 chr1.14802585.14803093 MIRc SINE SINE
1630 chr1.14814970.14815690 MIRb SINE SINE
1631 chr1.14814970.14815690 MIRb SINE SINE
1632 chr1.14826115.14826677 L2c LINE LINE
1633 chr1.14850224.14850492 AluSc SINE SINE
1634 chr1.14850224.14850492 Tigger9a DNA DNA
1635 chr1.14850224.14850492 MIRb SINE SINE
1636 chr1.14875702.14876609 MER63A DNA DNA
1637 chr1.14875702.14876609 MIR SINE SINE
1638 chr1.14882015.14882376 MER5A1 DNA DNA
1639 chr1.14882015.14882376 MIRc SINE SINE
1640 chr1.14910112.14910514 MER20 DNA DNA
1641 chr1.14915352.14915905 MIRb SINE SINE
1642 chr1.14915352.14915905 MIRb SINE SINE
1643 chr1.14915352.14915905 MIR SINE SINE
1644 chr1.14922914.14925236 MIR1_Amn SINE SINE
1645 chr1.14922914.14925236 (GGGGGC)n Other Simple_repeat
1646 chr1.14922914.14925236 G-rich Other Low_complexity
1647 chr1.14922914.14925236 G-rich Other Low_complexity
1648 chr1.14929504.14930255 <NA> <NA> <NA>
1649 chr1.14939883.14940295 MLT1M LTR LTR
1650 chr1.14939883.14940295 L3 LINE LINE
1651 chr1.14942784.14943454 (GT)n Other Simple_repeat
1652 chr1.14945334.14946146 (CCTC)n Other Simple_repeat
1653 chr1.14945334.14946146 MIR SINE SINE
1654 chr1.14946845.14947189 <NA> <NA> <NA>
1655 chr1.14968510.14969306 MLT1D LTR LTR
1656 chr1.14980903.14981148 <NA> <NA> <NA>
1657 chr1.14996073.14996995 L2b LINE LINE
1658 chr1.14996073.14996995 L2b LINE LINE
1659 chr1.15021015.15021851 MIRc SINE SINE
1660 chr1.15021015.15021851 THE1B LTR LTR
1661 chr1.15027489.15028608 MIR3 SINE SINE
1662 chr1.15027489.15028608 (TGTT)n Other Simple_repeat
1663 chr1.15033416.15033728 L1MB8 LINE LINE
1664 chr1.15046373.15047093 Tigger2a DNA DNA
1665 chr1.15046373.15047093 MIRb SINE SINE
1666 chr1.15056901.15057255 MIRb SINE SINE
1667 chr1.15089401.15089958 MER65D LTR LTR
1668 chr1.15090280.15090879 MIRc SINE SINE
1669 chr1.15099871.15100774 (GAGCTCA)n Other Simple_repeat
1670 chr1.15099871.15100774 MIRb SINE SINE
1671 chr1.15106354.15107281 MIR3 SINE SINE
1672 chr1.15112100.15112696 MIRb SINE SINE
1673 chr1.15112100.15112696 (TG)n Other Simple_repeat
1674 chr1.15128480.15129138 MER5B DNA DNA
1675 chr1.15128480.15129138 MER5A DNA DNA
1676 chr1.15139584.15140472 AluSx SINE SINE
1677 chr1.15139584.15140472 (AAAACC)n Other Simple_repeat
1678 chr1.15152376.15154813 (CCGCCTC)n Other Simple_repeat
1679 chr1.15152376.15154813 (GT)n Other Simple_repeat
1680 chr1.15158759.15159118 MER112 DNA DNA
1681 chr1.15168566.15168945 X7C_LINE LINE LINE
1682 chr1.15168566.15168945 MIRc SINE SINE
1683 chr1.15178903.15179465 L1ME2 LINE LINE
1684 chr1.15187247.15187852 <NA> <NA> <NA>
1685 chr1.15196836.15197532 MLT1K LTR LTR
1686 chr1.15200638.15200908 MLT1B LTR LTR
1687 chr1.15200638.15200908 UCON80_AMi Other Unknown
1688 chr1.15206477.15207019 MIRb SINE SINE
1689 chr1.15207271.15208289 L2a LINE LINE
1690 chr1.15214324.15214922 <NA> <NA> <NA>
1691 chr1.15220956.15221488 <NA> <NA> <NA>
1692 chr1.15226506.15227487 MER20 DNA DNA
1693 chr1.15243332.15243831 <NA> <NA> <NA>
1694 chr1.15247095.15247542 <NA> <NA> <NA>
1695 chr1.15260412.15261709 MLT1E2 LTR LTR
1696 chr1.15260412.15261709 MIR SINE SINE
1697 chr1.15272355.15272967 <NA> <NA> <NA>
1698 chr1.15304700.15305218 MamRep564 Other Unknown
1699 chr1.15304700.15305218 MIR SINE SINE
1700 chr1.15323112.15324121 THE1A LTR LTR
1701 chr1.15323112.15324121 MIRc SINE SINE
1702 chr1.15323112.15324121 MIR SINE SINE
1703 chr1.15337579.15338214 MER20 DNA DNA
1704 chr1.15337579.15338214 MIRc SINE SINE
1705 chr1.15337579.15338214 MLT1D LTR LTR
1706 chr1.15338279.15338469 MLT1D LTR LTR
1707 chr1.15343895.15344156 <NA> <NA> <NA>
1708 chr1.15352371.15352777 <NA> <NA> <NA>
1709 chr1.15354316.15354517 L3 LINE LINE
1710 chr1.15356092.15356522 LTR24 LTR LTR
1711 chr1.15356957.15357188 L1ME4a LINE LINE
1712 chr1.15377324.15377592 AluJb SINE SINE
1713 chr1.15379357.15379794 LTR5_Hs LTR LTR
1714 chr1.15409365.15410271 UCON78 DNA DNA
1715 chr1.15409365.15410271 (CG)n Other Simple_repeat
1716 chr1.15416066.15416655 MIRc SINE SINE
1717 chr1.15423203.15423678 MIRb SINE SINE
1718 chr1.15426676.15427204 (CCCT)n Other Simple_repeat
1719 chr1.15431088.15431630 MIR3 SINE SINE
1720 chr1.15431088.15431630 AluJr SINE SINE
1721 chr1.15444247.15444825 AluJr SINE SINE
1722 chr1.15463925.15464751 AluSz SINE SINE
1723 chr1.15463925.15464751 MIR SINE SINE
1724 chr1.15489455.15489662 GA-rich Other Low_complexity
1725 chr1.15492486.15493101 MER20 DNA DNA
1726 chr1.15501511.15501871 AluJb SINE SINE
1727 chr1.15502582.15502925 <NA> <NA> <NA>
1728 chr1.15507131.15507769 L2c LINE LINE
1729 chr1.15523903.15525515 G-rich Other Low_complexity
1730 chr1.15523903.15525515 (CCCCGC)n Other Simple_repeat
1731 chr1.15523903.15525515 (CCGCC)n Other Simple_repeat
1732 chr1.15526461.15527221 MIR3 SINE SINE
1733 chr1.15543354.15543942 L2a LINE LINE
1734 chr1.15543354.15543942 L2-1_AMi LINE LINE
1735 chr1.15568863.15569371 <NA> <NA> <NA>
1736 chr1.15582905.15583329 AluSx1 SINE SINE
1737 chr1.15582905.15583329 (CA)n Other Simple_repeat
1738 chr1.15584583.15585349 AluJo SINE SINE
1739 chr1.15595087.15595526 AluSz6 SINE SINE
1740 chr1.15595087.15595526 (AATAA)n Other Simple_repeat
1741 chr1.15595087.15595526 AluSg SINE SINE
1742 chr1.15596770.15597169 MER21C LTR LTR
1743 chr1.15596770.15597169 MSTB1 LTR LTR
1744 chr1.15601629.15602057 MER5A1 DNA DNA
1745 chr1.15601629.15602057 Tigger3a DNA DNA
1746 chr1.15601629.15602057 AluJo SINE SINE
1747 chr1.15603056.15603992 (AC)n Other Simple_repeat
1748 chr1.15616839.15618242 L2c LINE LINE
1749 chr1.15616839.15618242 G-rich Other Low_complexity
1750 chr1.15616839.15618242 (GAGC)n Other Simple_repeat
1751 chr1.15616839.15618242 G-rich Other Low_complexity
1752 chr1.15656605.15656936 <NA> <NA> <NA>
1753 chr1.15662577.15662819 <NA> <NA> <NA>
1754 chr1.15678595.15678960 MSTA LTR LTR
1755 chr1.15678595.15678960 AluSz SINE SINE
1756 chr1.15680215.15680512 L2 LINE LINE
1757 chr1.15680215.15680512 AluSz6 SINE SINE
1758 chr1.15680215.15680512 AluSg4 SINE SINE
1759 chr1.15681114.15681505 FLAM_A SINE SINE
1760 chr1.15684056.15684404 (GCC)n Other Simple_repeat
1761 chr1.15684573.15685243 <NA> <NA> <NA>
1762 chr1.15691359.15692071 AluJr SINE SINE
1763 chr1.15691359.15692071 AluJo SINE SINE
1764 chr1.15700415.15700790 MIR3 SINE SINE
1765 chr1.15700415.15700790 (TCTCCC)n Other Simple_repeat
1766 chr1.15703218.15704175 (GCCAG)n Other Simple_repeat
1767 chr1.15706783.15707162 L2a LINE LINE
1768 chr1.15706783.15707162 MER58A DNA DNA
1769 chr1.15706783.15707162 AluJb SINE SINE
1770 chr1.15714390.15715200 <NA> <NA> <NA>
1771 chr1.15717374.15717904 AluJo SINE SINE
1772 chr1.15722891.15723101 <NA> <NA> <NA>
1773 chr1.15741189.15741897 <NA> <NA> <NA>
1774 chr1.15749451.15749896 <NA> <NA> <NA>
1775 chr1.15757559.15758362 MIRb SINE SINE
1776 chr1.15758566.15759694 MIRb SINE SINE
1777 chr1.15760512.15761053 AluSz SINE SINE
1778 chr1.15760512.15761053 (T)n Other Simple_repeat
1779 chr1.15760512.15761053 (CTGG)n Other Simple_repeat
1780 chr1.15761822.15762021 <NA> <NA> <NA>
1781 chr1.15765907.15766130 MER5A DNA DNA
1782 chr1.15765907.15766130 AluJb SINE SINE
1783 chr1.15772211.15772471 <NA> <NA> <NA>
1784 chr1.15775649.15776082 MER21A LTR LTR
1785 chr1.15780592.15781246 AluSc SINE SINE
1786 chr1.15788623.15789213 AluJo SINE SINE
1787 chr1.15788623.15789213 MER90a LTR LTR
1788 chr1.15792061.15792404 AluSx SINE SINE
1789 chr1.15795073.15795633 FLAM_C SINE SINE
1790 chr1.15795073.15795633 LTR37A LTR LTR
1791 chr1.15795073.15795633 AluSx SINE SINE
1792 chr1.15796512.15796937 MIRb SINE SINE
1793 chr1.15796512.15796937 L1MD3 LINE LINE
1794 chr1.15799055.15799392 <NA> <NA> <NA>
1795 chr1.15800171.15800973 MIRb SINE SINE
1796 chr1.15800171.15800973 L2b LINE LINE
1797 chr1.15801105.15801377 L2b LINE LINE
1798 chr1.15801105.15801377 L2b LINE LINE
1799 chr1.15804200.15804424 AluSx SINE SINE
1800 chr1.15804200.15804424 L2a LINE LINE
1801 chr1.15815441.15815981 MIR1_Amn SINE SINE
1802 chr1.15815441.15815981 (T)n Other Simple_repeat
1803 chr1.15825405.15826155 AluSg SINE SINE
1804 chr1.15825405.15826155 FLAM_C SINE SINE
1805 chr1.15825405.15826155 L2-3_Crp LINE LINE
1806 chr1.15834348.15836452 (T)n Other Simple_repeat
1807 chr1.15834348.15836452 (GC)n Other Simple_repeat
1808 chr1.15847202.15848910 (CG)n Other Simple_repeat
1809 chr1.15847202.15848910 (GCC)n Other Simple_repeat
1810 chr1.15847202.15848910 (GCGTCGG)n Other Simple_repeat
1811 chr1.15849182.15850304 <NA> <NA> <NA>
1812 chr1.15860112.15860587 AluY SINE SINE
1813 chr1.15860112.15860587 AluJb SINE SINE
1814 chr1.15860112.15860587 (GT)n Other Simple_repeat
1815 chr1.15860112.15860587 AluJb SINE SINE
1816 chr1.15886163.15886804 <NA> <NA> <NA>
1817 chr1.15895168.15895488 AluSp SINE SINE
1818 chr1.15895168.15895488 L1MB3 LINE LINE
1819 chr1.15916534.15917392 AluJb SINE SINE
1820 chr1.15916534.15917392 AluJb SINE SINE
1821 chr1.15923297.15923717 AluSx4 SINE SINE
1822 chr1.15924649.15925394 AluSp SINE SINE
1823 chr1.15924649.15925394 MIRc SINE SINE
1824 chr1.15935199.15935875 <NA> <NA> <NA>
1825 chr1.15949166.15950180 <NA> <NA> <NA>
1826 chr1.15952423.15953038 MLT1H LTR LTR
1827 chr1.15952423.15953038 MLT1H LTR LTR
1828 chr1.15952423.15953038 L1ME3D LINE LINE
1829 chr1.15955950.15956614 Charlie23a DNA DNA
1830 chr1.15975037.15976296 L2c LINE LINE
1831 chr1.15975037.15976296 MIR SINE SINE
1832 chr1.15975037.15976296 MIRb SINE SINE
1833 chr1.15989654.15990160 <NA> <NA> <NA>
1834 chr1.15994485.15994945 L2c LINE LINE
1835 chr1.15997503.15997869 L2c LINE LINE
1836 chr1.15997503.15997869 MIR SINE SINE
1837 chr1.16009002.16009382 L2a LINE LINE
1838 chr1.16012567.16013729 MIRb SINE SINE
1839 chr1.16012567.16013729 MIR3 SINE SINE
1840 chr1.16012567.16013729 L2b LINE LINE
1841 chr1.16017309.16018550 (TCCCC)n Other Simple_repeat
1842 chr1.16017309.16018550 L3 LINE LINE
1843 chr1.16019566.16019882 G-rich Other Low_complexity
1844 chr1.16026503.16027220 G-rich Other Low_complexity
1845 chr1.16026503.16027220 MIR SINE SINE
1846 chr1.16032654.16033265 MIRc SINE SINE
1847 chr1.16038490.16038854 LTR16A1 LTR LTR
1848 chr1.16038490.16038854 AluSx SINE SINE
1849 chr1.16044111.16044468 (CACA)n Other Simple_repeat
1850 chr1.16046857.16047358 MIR1_Amn SINE SINE
1851 chr1.16046857.16047358 AluJo SINE SINE
1852 chr1.16048572.16049086 MIR SINE SINE
1853 chr1.16055694.16056499 MIRc SINE SINE
1854 chr1.16055694.16056499 MIRc SINE SINE
1855 chr1.16068305.16068768 MIRc SINE SINE
1856 chr1.16073122.16074116 G-rich Other Low_complexity
1857 chr1.16073122.16074116 (CGCCT)n Other Simple_repeat
1858 chr1.16073122.16074116 (GCC)n Other Simple_repeat
1859 chr1.16073122.16074116 G-rich Other Low_complexity
1860 chr1.16073122.16074116 MIRc SINE SINE
1861 chr1.16076089.16076365 G-rich Other Low_complexity
1862 chr1.16078956.16079538 MER91A DNA DNA
1863 chr1.16078956.16079538 MER91A DNA DNA
1864 chr1.16078956.16079538 MIR3 SINE SINE
1865 chr1.16080630.16081048 MER58A DNA DNA
1866 chr1.16080630.16081048 AluSx SINE SINE
1867 chr1.16082271.16082787 MIRc SINE SINE
1868 chr1.16082271.16082787 L2b LINE LINE
1869 chr1.16088871.16089404 <NA> <NA> <NA>
1870 chr1.16096349.16096750 L2b LINE LINE
1871 chr1.16111542.16112380 AluJr SINE SINE
1872 chr1.16111542.16112380 (CTGT)n Other Simple_repeat
1873 chr1.16111542.16112380 (CA)n Other Simple_repeat
1874 chr1.16112965.16113444 MIRb SINE SINE
1875 chr1.16133057.16134435 MIRc SINE SINE
1876 chr1.16138568.16139816 MIRb SINE SINE
1877 chr1.16138568.16139816 L2a LINE LINE
1878 chr1.16140924.16141209 FLAM_C SINE SINE
1879 chr1.16143626.16144300 (CCCGCCT)n Other Simple_repeat
1880 chr1.16143626.16144300 (GGAG)n Other Simple_repeat
1881 chr1.16144922.16147144 MIRb SINE SINE
1882 chr1.16144922.16147144 MIRb SINE SINE
1883 chr1.16144922.16147144 MIR3 SINE SINE
1884 chr1.16151217.16151686 MIR3 SINE SINE
1885 chr1.16151217.16151686 Tigger17 DNA DNA
1886 chr1.16152043.16152954 G-rich Other Low_complexity
1887 chr1.16153972.16154264 <NA> <NA> <NA>
1888 chr1.16154804.16156396 (GCCC)n Other Simple_repeat
1889 chr1.16164209.16164603 L2a LINE LINE
1890 chr1.16164209.16164603 MIR SINE SINE
1891 chr1.16167387.16168328 (AGGCAGG)n Other Simple_repeat
1892 chr1.16167387.16168328 AluJo SINE SINE
1893 chr1.16167387.16168328 AluSx3 SINE SINE
1894 chr1.16173053.16173876 MIRb SINE SINE
1895 chr1.16173053.16173876 MIRb SINE SINE
1896 chr1.16175682.16176226 <NA> <NA> <NA>
1897 chr1.16181632.16182452 L2a LINE LINE
1898 chr1.16187656.16188271 (CCCTGC)n Other Simple_repeat
1899 chr1.16187656.16188271 (ATG)n Other Simple_repeat
1900 chr1.16187656.16188271 MIRb SINE SINE
1901 chr1.16206265.16207237 <NA> <NA> <NA>
1902 chr1.16208291.16208498 MIRc SINE SINE
1903 chr1.16216174.16216465 <NA> <NA> <NA>
1904 chr1.16217067.16217833 MIR SINE SINE
1905 chr1.16226156.16227328 L3 LINE LINE
1906 chr1.16226156.16227328 AluSx SINE SINE
1907 chr1.16236151.16237564 MIRb SINE SINE
1908 chr1.16236151.16237564 MIR SINE SINE
1909 chr1.16236151.16237564 (TTA)n Other Simple_repeat
1910 chr1.16236151.16237564 MIR3 SINE SINE
1911 chr1.16244278.16244787 MIRb SINE SINE
1912 chr1.16248270.16249229 <NA> <NA> <NA>
1913 chr1.16254464.16254967 (TTTC)n Other Simple_repeat
1914 chr1.16260727.16261243 AluJr SINE SINE
1915 chr1.16266336.16267020 FLAM_A SINE SINE
1916 chr1.16302918.16303442 THE1D LTR LTR
1917 chr1.16302918.16303442 AluSz6 SINE SINE
1918 chr1.16302918.16303442 MER20 DNA DNA
1919 chr1.16324301.16324958 AluJo SINE SINE
1920 chr1.16324301.16324958 AluJb SINE SINE
1921 chr1.16338922.16339266 AluSq2 SINE SINE
1922 chr1.16348959.16349104 <NA> <NA> <NA>
1923 chr1.16351585.16352993 (CGC)n Other Simple_repeat
1924 chr1.16351585.16352993 (GC)n Other Simple_repeat
1925 chr1.16351585.16352993 MIRb SINE SINE
1926 chr1.16366955.16368412 <NA> <NA> <NA>
1927 chr1.16375359.16376333 AluSx SINE SINE
1928 chr1.16386467.16386673 <NA> <NA> <NA>
1929 chr1.16387395.16387908 <NA> <NA> <NA>
1930 chr1.16396586.16396991 <NA> <NA> <NA>
1931 chr1.16403000.16403398 MLT1K LTR LTR
1932 chr1.16434613.16434961 L1MB8 LINE LINE
1933 chr1.16434613.16434961 AluJr SINE SINE
1934 chr1.16440245.16441497 (AGGCAG)n Other Simple_repeat
1935 chr1.16451969.16452575 L2c LINE LINE
1936 chr1.16457751.16457996 AluJb SINE SINE
1937 chr1.16464918.16465503 MLT1F2 LTR LTR
1938 chr1.16464918.16465503 AluSc SINE SINE
1939 chr1.16475764.16476188 <NA> <NA> <NA>
1940 chr1.16484178.16484563 <NA> <NA> <NA>
1941 chr1.16492885.16493231 AluSc SINE SINE
1942 chr1.16492885.16493231 AluSx SINE SINE
1943 chr1.16498522.16499885 MIRb SINE SINE
1944 chr1.16498522.16499885 (GGCCGG)n Other Simple_repeat
1945 chr1.16513594.16514867 LTR75 LTR LTR
1946 chr1.16513594.16514867 MER45B DNA DNA
1947 chr1.16513594.16514867 U1 Other snRNA
1948 chr1.16513594.16514867 Charlie4a DNA DNA
1949 chr1.16534781.16535673 tRNA-Glu-GAA Other tRNA
1950 chr1.16612612.16613037 <NA> <NA> <NA>
1951 chr1.16613216.16613995 (CCGCGCC)n Other Simple_repeat
1952 chr1.16613216.16613995 (CCTGCG)n Other Simple_repeat
1953 chr1.16620863.16621472 AluSc8 SINE SINE
1954 chr1.16620863.16621472 MER91B DNA DNA
1955 chr1.16620863.16621472 MIR SINE SINE
1956 chr1.16625014.16625184 <NA> <NA> <NA>
1957 chr1.16630924.16631536 <NA> <NA> <NA>
1958 chr1.16643816.16645158 MER3 DNA DNA
1959 chr1.16677999.16678357 tRNA-Gly-GGG Other tRNA
1960 chr1.16709613.16710091 MIR SINE SINE
1961 chr1.16717471.16718467 <NA> <NA> <NA>
1962 chr1.16718751.16719225 <NA> <NA> <NA>
1963 chr1.16725611.16725917 tRNA-Val-GTG Other tRNA
1964 chr1.16727245.16727990 tRNA-Gly-GGG Other tRNA
1965 chr1.16770470.16770638 MamRTE1 LINE LINE
1966 chr1.16770470.16770638 MER63A DNA DNA
1967 chr1.16888911.16889906 tRNA-Asn-AAC Other tRNA
1968 chr1.16895437.16896963 Charlie4a DNA DNA
1969 chr1.16895437.16896963 U1 Other snRNA
1970 chr1.16895437.16896963 MER45B DNA DNA
1971 chr1.16895437.16896963 LTR75B LTR LTR
1972 chr1.16903843.16904289 LTR23-int LTR LTR
1973 chr1.16903843.16904289 AluYc3 SINE SINE
1974 chr1.16904487.16905563 Charlie4a DNA DNA
1975 chr1.16904487.16905563 LTR4 LTR LTR
1976 chr1.16913600.16914654 (CCCCGC)n Other Simple_repeat
1977 chr1.16913600.16914654 MIRb SINE SINE
1978 chr1.16921562.16922195 <NA> <NA> <NA>
1979 chr1.16927259.16927839 <NA> <NA> <NA>
1980 chr1.16938826.16939137 <NA> <NA> <NA>
1981 chr1.16951579.16952034 MIR SINE SINE
1982 chr1.16951579.16952034 MER91B DNA DNA
1983 chr1.16951579.16952034 AluSg SINE SINE
1984 chr1.16960665.16961170 (CTGGAG)n Other Simple_repeat
1985 chr1.16960665.16961170 (GGCCTC)n Other Simple_repeat
1986 chr1.16963584.16963855 MIR SINE SINE
1987 chr1.16963584.16963855 AluSx3 SINE SINE
1988 chr1.16967156.16967782 MIRb SINE SINE
1989 chr1.16971851.16972254 MLT1K LTR LTR
1990 chr1.16986778.16987395 <NA> <NA> <NA>
1991 chr1.17003924.17004288 AluSg4 SINE SINE
1992 chr1.17003924.17004288 MIR SINE SINE
1993 chr1.17003924.17004288 MIR SINE SINE
1994 chr1.17011473.17012346 (CCGGCC)n Other Simple_repeat
1995 chr1.17011473.17012346 MIRb SINE SINE
1996 chr1.17011473.17012346 AluSp SINE SINE
1997 chr1.17022585.17022857 <NA> <NA> <NA>
1998 chr1.17023009.17023445 <NA> <NA> <NA>
1999 chr1.17053656.17054631 MIRc SINE SINE
2000 chr1.17053656.17054631 AluSx3 SINE SINE
2001 chr1.17059586.17060224 MIRb SINE SINE
2002 chr1.17061846.17062191 (TCAT)n Other Simple_repeat
2003 chr1.17061846.17062191 L2c LINE LINE
2004 chr1.17061846.17062191 MER94 DNA DNA
2005 chr1.17063567.17064014 AluSx1 SINE SINE
2006 chr1.17070051.17070709 MIRb SINE SINE
2007 chr1.17070051.17070709 MIR SINE SINE
2008 chr1.17070051.17070709 AluSx1 SINE SINE
2009 chr1.17075460.17075759 MER33 DNA DNA
2010 chr1.17081505.17081676 <NA> <NA> <NA>
2011 chr1.17091015.17091187 <NA> <NA> <NA>
2012 chr1.17119302.17119634 <NA> <NA> <NA>
2013 chr1.17122325.17123066 MIR SINE SINE
2014 chr1.17122325.17123066 MIRb SINE SINE
2015 chr1.17122325.17123066 L2c LINE LINE
2016 chr1.17125831.17126339 (TGTCCTG)n Other Simple_repeat
2017 chr1.17128196.17129041 AluSx SINE SINE
2018 chr1.17128196.17129041 LTR24B LTR LTR
2019 chr1.17128196.17129041 AluJr SINE SINE
2020 chr1.17134078.17135122 LTR56 LTR LTR
2021 chr1.17134078.17135122 (CA)n Other Simple_repeat
2022 chr1.17155334.17156213 LTR76 LTR LTR
2023 chr1.17155334.17156213 MER51A LTR LTR
2024 chr1.17163060.17163527 <NA> <NA> <NA>
2025 chr1.17168045.17168453 MIR SINE SINE
2026 chr1.17182038.17182378 L1M4 LINE LINE
2027 chr1.17189925.17190302 <NA> <NA> <NA>
2028 chr1.17200094.17200583 MER102c DNA DNA
2029 chr1.17200094.17200583 PABL_B LTR LTR
2030 chr1.17200094.17200583 AluSz6 SINE SINE
2031 chr1.17207097.17207766 MIR3 SINE SINE
2032 chr1.17207097.17207766 MIRb SINE SINE
2033 chr1.17208146.17208381 <NA> <NA> <NA>
2034 chr1.17210349.17210589 <NA> <NA> <NA>
2035 chr1.17212333.17213598 L3 LINE LINE
2036 chr1.17212333.17213598 MIRc SINE SINE
2037 chr1.17212333.17213598 MER83 LTR LTR
2038 chr1.17233791.17234086 MIRb SINE SINE
2039 chr1.17236921.17237574 L2a LINE LINE
2040 chr1.17236921.17237574 MIR SINE SINE
2041 chr1.17239465.17239897 L2c LINE LINE
2042 chr1.17251809.17252026 L2c LINE LINE
2043 chr1.17265207.17265728 MIRb SINE SINE
2044 chr1.17265207.17265728 L2c LINE LINE
2045 chr1.17274110.17274752 <NA> <NA> <NA>
2046 chr1.17289726.17290049 <NA> <NA> <NA>
2047 chr1.17335953.17336484 <NA> <NA> <NA>
2048 chr1.17348301.17348667 MIRb SINE SINE
2049 chr1.17360118.17360528 AluSx1 SINE SINE
2050 chr1.17360118.17360528 LTR62 LTR LTR
2051 chr1.17369569.17369806 L2a LINE LINE
2052 chr1.17405931.17406641 HERV-Fc2_LTR LTR LTR
2053 chr1.17419576.17420218 MIRb SINE SINE
2054 chr1.17423744.17424305 <NA> <NA> <NA>
2055 chr1.17426086.17426470 <NA> <NA> <NA>
2056 chr1.17437673.17438879 (GCCGCGG)n Other Simple_repeat
2057 chr1.17439034.17440183 (A)n Other Simple_repeat
2058 chr1.17443472.17443876 L2b LINE LINE
2059 chr1.17443472.17443876 MIRc SINE SINE
2060 chr1.17443472.17443876 MER5A1 DNA DNA
2061 chr1.17443472.17443876 AluJb SINE SINE
2062 chr1.17460277.17460618 MIRb SINE SINE
2063 chr1.17475707.17476306 AluJb SINE SINE
2064 chr1.17475707.17476306 L1ME2 LINE LINE
2065 chr1.17477287.17477886 AluSc SINE SINE
2066 chr1.17477287.17477886 AluSx SINE SINE
2067 chr1.17485350.17485788 AluSx1 SINE SINE
2068 chr1.17485350.17485788 L2a LINE LINE
2069 chr1.17494089.17494710 L2a LINE LINE
2070 chr1.17494089.17494710 L2a LINE LINE
2071 chr1.17494089.17494710 MIRb SINE SINE
2072 chr1.17502166.17503088 AluSg SINE SINE
2073 chr1.17502166.17503088 MIRb SINE SINE
2074 chr1.17502166.17503088 MLT1H LTR LTR
2075 chr1.17508045.17508279 <NA> <NA> <NA>
2076 chr1.17516349.17516827 <NA> <NA> <NA>
2077 chr1.17531887.17532453 <NA> <NA> <NA>
2078 chr1.17538138.17539166 L2a LINE LINE
2079 chr1.17538138.17539166 L2a LINE LINE
2080 chr1.17538138.17539166 L2a LINE LINE
2081 chr1.17538138.17539166 MIRb SINE SINE
2082 chr1.17539517.17541162 (GTGGCC)n Other Simple_repeat
2083 chr1.17545414.17545991 L2c LINE LINE
2084 chr1.17545414.17545991 L2c LINE LINE
2085 chr1.17551058.17551488 MIRb SINE SINE
2086 chr1.17551058.17551488 L2b LINE LINE
2087 chr1.17551706.17552369 MIRc SINE SINE
2088 chr1.17551706.17552369 G-rich Other Low_complexity
2089 chr1.17551706.17552369 MIRc SINE SINE
2090 chr1.17551706.17552369 MIR SINE SINE
2091 chr1.17553985.17554491 MIRb SINE SINE
2092 chr1.17553985.17554491 MIR3 SINE SINE
2093 chr1.17561644.17562086 (TGCCC)n Other Simple_repeat
2094 chr1.17561644.17562086 (CTTTTC)n Other Simple_repeat
2095 chr1.17561644.17562086 MIRb SINE SINE
2096 chr1.17569213.17570319 L2a LINE LINE
2097 chr1.17581947.17582280 <NA> <NA> <NA>
2098 chr1.17587545.17588732 MIRb SINE SINE
2099 chr1.17593967.17594343 MIR SINE SINE
2100 chr1.17596269.17596484 <NA> <NA> <NA>
2101 chr1.17605530.17606328 MIRc SINE SINE
2102 chr1.17605530.17606328 MIRb SINE SINE
2103 chr1.17605530.17606328 AluSx SINE SINE
2104 chr1.17606786.17607222 MIRc SINE SINE
2105 chr1.17606786.17607222 AluJo SINE SINE
2106 chr1.17612067.17612313 (CATC)n Other Simple_repeat
2107 chr1.17612067.17612313 MER63A DNA DNA
2108 chr1.17612067.17612313 (CATC)n Other Simple_repeat
2109 chr1.17618018.17619353 MIRb SINE SINE
2110 chr1.17618018.17619353 (CCT)n Other Simple_repeat
2111 chr1.17624775.17625258 <NA> <NA> <NA>
2112 chr1.17653668.17654397 MIR3 SINE SINE
2113 chr1.17653668.17654397 MIR3 SINE SINE
2114 chr1.17661508.17662159 MIRb SINE SINE
2115 chr1.17661508.17662159 MIR SINE SINE
2116 chr1.17666015.17666407 MLT2B4 LTR LTR
2117 chr1.17676346.17677054 <NA> <NA> <NA>
2118 chr1.17679297.17679768 MIRb SINE SINE
2119 chr1.17679297.17679768 MER81 DNA DNA
2120 chr1.17679297.17679768 MIRb SINE SINE
2121 chr1.17679297.17679768 MIRb SINE SINE
2122 chr1.17686194.17686553 L2c LINE LINE
2123 chr1.17688910.17689379 MIRb SINE SINE
2124 chr1.17688910.17689379 MIRb SINE SINE
2125 chr1.17696451.17697236 L2c LINE LINE
2126 chr1.17701242.17701941 L2a LINE LINE
2127 chr1.17717841.17718283 LTR16A2 LTR LTR
2128 chr1.17732487.17732882 MLT1H2 LTR LTR
2129 chr1.17732487.17732882 MIR3 SINE SINE
2130 chr1.17757515.17757831 ERVL-E-int LTR LTR
2131 chr1.17768582.17769234 MIRb SINE SINE
2132 chr1.17798119.17798427 L2c LINE LINE
2133 chr1.17818991.17819874 AluJb SINE SINE
2134 chr1.17826163.17826621 G-rich Other Low_complexity
2135 chr1.17831678.17831893 MIRb SINE SINE
2136 chr1.17858051.17858442 <NA> <NA> <NA>
2137 chr1.17866427.17866874 MIR3 SINE SINE
2138 chr1.17874123.17875269 MIR SINE SINE
2139 chr1.17874123.17875269 CR1-3_Croc LINE LINE
2140 chr1.17874123.17875269 MIR3 SINE SINE
2141 chr1.17875602.17876307 MLT1K LTR LTR
2142 chr1.17875602.17876307 MLT1J2 LTR LTR
2143 chr1.17891170.17891572 MIR SINE SINE
2144 chr1.17891170.17891572 (TGC)n Other Simple_repeat
2145 chr1.17891170.17891572 (TTGCTG)n Other Simple_repeat
2146 chr1.17891170.17891572 L2b LINE LINE
2147 chr1.17894304.17894535 MLT1K LTR LTR
2148 chr1.17909299.17909977 MER58C DNA DNA
2149 chr1.17909299.17909977 Helitron1Na_Mam Other RC
2150 chr1.17909299.17909977 LTR33A_ LTR LTR
2151 chr1.17910551.17910912 MER113 DNA DNA
2152 chr1.17910551.17910912 MER4A1 LTR LTR
2153 chr1.17919443.17920339 AluJr SINE SINE
2154 chr1.17922899.17923082 L2a LINE LINE
2155 chr1.17930444.17931276 MIRb SINE SINE
2156 chr1.17930444.17931276 L2a LINE LINE
2157 chr1.17930444.17931276 L2a LINE LINE
2158 chr1.17955528.17956060 MIR SINE SINE
2159 chr1.17955528.17956060 MIR3 SINE SINE
2160 chr1.18091867.18092442 L2b LINE LINE
2161 chr1.18091867.18092442 L2b LINE LINE
2162 chr1.18100597.18100920 <NA> <NA> <NA>
2163 chr1.18107931.18108705 (GAGCC)n Other Simple_repeat
2164 chr1.18107931.18108705 (CCG)n Other Simple_repeat
2165 chr1.18109910.18110628 <NA> <NA> <NA>
2166 chr1.18116363.18116605 MIRc SINE SINE
2167 chr1.18146311.18146557 MIR1_Amn SINE SINE
2168 chr1.18166390.18166806 MIRb SINE SINE
2169 chr1.18166390.18166806 L2c LINE LINE
2170 chr1.18182545.18183108 (TGAA)n Other Simple_repeat
2171 chr1.18217479.18217824 MIRc SINE SINE
2172 chr1.18234671.18235264 THE1C LTR LTR
2173 chr1.18234671.18235264 MER5B DNA DNA
2174 chr1.18234671.18235264 L2a LINE LINE
2175 chr1.18256267.18256735 L2c LINE LINE
2176 chr1.18290482.18291077 <NA> <NA> <NA>
2177 chr1.18344668.18345044 <NA> <NA> <NA>
2178 chr1.18373785.18374414 MIR SINE SINE
2179 chr1.18373785.18374414 MIRb SINE SINE
2180 chr1.18373785.18374414 MIRc SINE SINE
2181 chr1.18385165.18385830 GA-rich Other Low_complexity
2182 chr1.18396359.18396945 MER68 LTR LTR
2183 chr1.18422179.18422389 LTR49-int LTR LTR
2184 chr1.18422179.18422389 MER41B LTR LTR
2185 chr1.18475609.18475978 AluJo SINE SINE
2186 chr1.18475609.18475978 MER74A LTR LTR
2187 chr1.18480497.18481297 <NA> <NA> <NA>
2188 chr1.18557565.18558179 L2a LINE LINE
2189 chr1.18575546.18575993 MIR3 SINE SINE
2190 chr1.18581320.18581827 MER113A DNA DNA
2191 chr1.18581320.18581827 (TAT)n Other Simple_repeat
2192 chr1.18581320.18581827 AluSz SINE SINE
2193 chr1.18584551.18585175 MIR SINE SINE
2194 chr1.18584551.18585175 L1ME1 LINE LINE
2195 chr1.18597181.18597874 L2a LINE LINE
2196 chr1.18597181.18597874 MIRc SINE SINE
2197 chr1.18602821.18603099 MIRb SINE SINE
2198 chr1.18618382.18619165 MIR SINE SINE
2199 chr1.18618382.18619165 L1ME4a LINE LINE
2200 chr1.18630922.18631248 GA-rich Other Low_complexity
2201 chr1.18635815.18636113 (TG)n Other Simple_repeat
2202 chr1.18643272.18644067 <NA> <NA> <NA>
2203 chr1.18655519.18655865 (GT)n Other Simple_repeat
2204 chr1.18681361.18681630 <NA> <NA> <NA>
2205 chr1.18693687.18694103 <NA> <NA> <NA>
2206 chr1.18703044.18703594 <NA> <NA> <NA>
2207 chr1.18717062.18717442 (CCG)n Other Simple_repeat
2208 chr1.18717062.18717442 L2b LINE LINE
2209 chr1.18726636.18727330 L3b LINE LINE
2210 chr1.18726636.18727330 (CA)n Other Simple_repeat
2211 chr1.18793921.18794751 MIRc SINE SINE
2212 chr1.18793921.18794751 MIRc SINE SINE
2213 chr1.18793921.18794751 MIR SINE SINE
2214 chr1.18806000.18806708 L2b LINE LINE
2215 chr1.18806000.18806708 L2b LINE LINE
2216 chr1.18820384.18821199 (GT)n Other Simple_repeat
2217 chr1.18875052.18875704 <NA> <NA> <NA>
2218 chr1.18882431.18882911 MIRb SINE SINE
2219 chr1.18882431.18882911 MIRb SINE SINE
2220 chr1.18884078.18884548 LTR86A1 LTR LTR
2221 chr1.18901999.18903204 <NA> <NA> <NA>
2222 chr1.18909218.18909429 MIRb SINE SINE
2223 chr1.18912995.18913515 <NA> <NA> <NA>
2224 chr1.18922111.18922871 MIR SINE SINE
2225 chr1.18922111.18922871 MIR3 SINE SINE
2226 chr1.18926338.18926952 (AGGCC)n Other Simple_repeat
2227 chr1.18937025.18937414 MIRb SINE SINE
2228 chr1.18938343.18939074 L2b LINE LINE
2229 chr1.18938343.18939074 MIR3 SINE SINE
2230 chr1.18944989.18945722 L2c LINE LINE
2231 chr1.18949101.18950487 L2b LINE LINE
2232 chr1.18949101.18950487 (GT)n Other Simple_repeat
2233 chr1.18949101.18950487 MIRc SINE SINE
2234 chr1.18954678.18955064 <NA> <NA> <NA>
2235 chr1.18955353.18957359 MIRb SINE SINE
2236 chr1.18955353.18957359 (GGCGCCG)n Other Simple_repeat
2237 chr1.18955353.18957359 (GCT)n Other Simple_repeat
2238 chr1.18955353.18957359 (CCG)n Other Simple_repeat
2239 chr1.18955353.18957359 (GGCCCCG)n Other Simple_repeat
2240 chr1.18965145.18966284 MIRb SINE SINE
2241 chr1.18965145.18966284 L1ME4b LINE LINE
2242 chr1.19003436.19003740 L1MEc LINE LINE
2243 chr1.19005413.19005712 Charlie7 DNA DNA
2244 chr1.19005413.19005712 L2c LINE LINE
2245 chr1.19005413.19005712 THE1B LTR LTR
2246 chr1.19009883.19010299 MIRb SINE SINE
2247 chr1.19010715.19011469 LTR88a LTR LTR
2248 chr1.19010715.19011469 MIRc SINE SINE
2249 chr1.19012161.19012563 <NA> <NA> <NA>
2250 chr1.19035408.19035638 MLT1C LTR LTR
2251 chr1.19035408.19035638 MER45A DNA DNA
2252 chr1.19045291.19046136 MIRb SINE SINE
2253 chr1.19045291.19046136 L3b LINE LINE
2254 chr1.19052240.19052936 AluSg SINE SINE
2255 chr1.19052240.19052936 L1MC4 LINE LINE
2256 chr1.19057193.19057781 AluSx SINE SINE
2257 chr1.19057193.19057781 L2a LINE LINE
2258 chr1.19059714.19060052 <NA> <NA> <NA>
2259 chr1.19061625.19062074 L2b LINE LINE
2260 chr1.19066171.19066519 MER53 DNA DNA
2261 chr1.19079383.19079819 <NA> <NA> <NA>
2262 chr1.19081163.19081968 MIRc SINE SINE
2263 chr1.19086385.19086696 <NA> <NA> <NA>
2264 chr1.19094549.19095537 MIR3 SINE SINE
2265 chr1.19096185.19096667 (CTT)n Other Simple_repeat
2266 chr1.19112426.19112770 <NA> <NA> <NA>
2267 chr1.19113672.19114067 <NA> <NA> <NA>
2268 chr1.19121280.19121489 <NA> <NA> <NA>
2269 chr1.19122581.19122955 <NA> <NA> <NA>
2270 chr1.19140603.19141036 <NA> <NA> <NA>
2271 chr1.19151379.19152095 <NA> <NA> <NA>
2272 chr1.19156731.19157128 <NA> <NA> <NA>
2273 chr1.19169402.19170163 <NA> <NA> <NA>
2274 chr1.19195683.19195942 L2c LINE LINE
2275 chr1.19197611.19198173 AluJb SINE SINE
2276 chr1.19203380.19203822 AluSx SINE SINE
2277 chr1.19209323.19211114 (CCG)n Other Simple_repeat
2278 chr1.19232397.19232711 <NA> <NA> <NA>
2279 chr1.19241111.19241666 MER102a DNA DNA
2280 chr1.19241111.19241666 AluJb SINE SINE
2281 chr1.19251149.19252510 MER45A DNA DNA
2282 chr1.19251149.19252510 AluJo SINE SINE
2283 chr1.19251149.19252510 AluSx1 SINE SINE
2284 chr1.19257624.19257900 <NA> <NA> <NA>
2285 chr1.19260190.19261128 <NA> <NA> <NA>
2286 chr1.19274099.19274546 <NA> <NA> <NA>
2287 chr1.19288327.19289385 L1MEc LINE LINE
2288 chr1.19288327.19289385 FLAM_C SINE SINE
2289 chr1.19311124.19313252 (GGCGC)n Other Simple_repeat
2290 chr1.19311124.19313252 MIRb SINE SINE
2291 chr1.19336704.19336861 L1MCb LINE LINE
2292 chr1.19338412.19338657 <NA> <NA> <NA>
2293 chr1.19341361.19341778 <NA> <NA> <NA>
2294 chr1.19343083.19343853 MIRc SINE SINE
2295 chr1.19344468.19344778 <NA> <NA> <NA>
2296 chr1.19352940.19353285 <NA> <NA> <NA>
2297 chr1.19375719.19376161 MIRb SINE SINE
2298 chr1.19376562.19376772 L2b LINE LINE
2299 chr1.19384147.19384563 (CCCT)n Other Simple_repeat
2300 chr1.19384147.19384563 MIRb SINE SINE
2301 chr1.19398463.19398739 <NA> <NA> <NA>
2302 chr1.19400163.19400679 <NA> <NA> <NA>
2303 chr1.19429582.19430612 MIRb SINE SINE
2304 chr1.19436021.19436354 MIR SINE SINE
2305 chr1.19436021.19436354 Tigger7 DNA DNA
2306 chr1.19440503.19440796 AluY SINE SINE
2307 chr1.19445898.19446210 <NA> <NA> <NA>
2308 chr1.19448527.19448745 <NA> <NA> <NA>
2309 chr1.19448802.19449552 AluSz6 SINE SINE
2310 chr1.19450856.19451151 <NA> <NA> <NA>
2311 chr1.19468383.19468836 (GCAGG)n Other Simple_repeat
2312 chr1.19469258.19470042 MER113 DNA DNA
2313 chr1.19469258.19470042 (AC)n Other Simple_repeat
2314 chr1.19469258.19470042 AluJb SINE SINE
2315 chr1.19479199.19479686 AluSx3 SINE SINE
2316 chr1.19484436.19486237 (GGC)n Other Simple_repeat
2317 chr1.19484436.19486237 (GCGGC)n Other Simple_repeat
2318 chr1.19484436.19486237 (GCCCA)n Other Simple_repeat
2319 chr1.19484436.19486237 L2a LINE LINE
2320 chr1.19559478.19560121 AluSx SINE SINE
2321 chr1.19559478.19560121 LTR37-int LTR LTR
2322 chr1.19582238.19582628 Charlie4z DNA DNA
2323 chr1.19596374.19597766 <NA> <NA> <NA>
2324 chr1.19632021.19632489 L1MC4 LINE LINE
2325 chr1.19632021.19632489 (GT)n Other Simple_repeat
2326 chr1.19632021.19632489 L1MC4 LINE LINE
2327 chr1.19640454.19641134 (GGCCCA)n Other Simple_repeat
2328 chr1.19640454.19641134 MIRb SINE SINE
2329 chr1.19643948.19644333 <NA> <NA> <NA>
2330 chr1.19644587.19645224 (GGGA)n Other Simple_repeat
2331 chr1.19644587.19645224 (GGCCG)n Other Simple_repeat
2332 chr1.19644587.19645224 (TC)n Other Simple_repeat
2333 chr1.19644587.19645224 (TGTCTC)n Other Simple_repeat
2334 chr1.19651051.19651584 MIRb SINE SINE
2335 chr1.19653643.19654108 <NA> <NA> <NA>
2336 chr1.19659474.19660063 AluJb SINE SINE
2337 chr1.19659474.19660063 A-rich Other Low_complexity
2338 chr1.19665626.19666409 <NA> <NA> <NA>
2339 chr1.19676361.19676744 MIRb SINE SINE
2340 chr1.19682348.19682597 MER91C DNA DNA
2341 chr1.19704350.19705079 MIR3 SINE SINE
2342 chr1.19715451.19716043 AluJo SINE SINE
2343 chr1.19733858.19734752 MIR SINE SINE
2344 chr1.19733858.19734752 (TTA)n Other Simple_repeat
2345 chr1.19733858.19734752 L2a LINE LINE
2346 chr1.19733858.19734752 MIR SINE SINE
2347 chr1.19737402.19737766 <NA> <NA> <NA>
2348 chr1.19744451.19744942 MIR SINE SINE
2349 chr1.19744451.19744942 L2b LINE LINE
2350 chr1.19750556.19750801 (TGCC)n Other Simple_repeat
2351 chr1.19750556.19750801 L2c LINE LINE
2352 chr1.19752106.19752593 <NA> <NA> <NA>
2353 chr1.19758249.19758798 <NA> <NA> <NA>
2354 chr1.19759773.19760001 L2a LINE LINE
2355 chr1.19765696.19765979 <NA> <NA> <NA>
2356 chr1.19768382.19769022 MER5A1 DNA DNA
2357 chr1.19768382.19769022 MLT1L LTR LTR
2358 chr1.19792254.19792722 L2a LINE LINE
2359 chr1.19792254.19792722 MamRep137 DNA DNA
2360 chr1.19799493.19800583 MIR3 SINE SINE
2361 chr1.19799493.19800583 G-rich Other Low_complexity
2362 chr1.19799493.19800583 (GGAGGC)n Other Simple_repeat
2363 chr1.19799493.19800583 (CGGCC)n Other Simple_repeat
2364 chr1.19799493.19800583 MIRc SINE SINE
2365 chr1.19799493.19800583 L2b LINE LINE
2366 chr1.19814372.19814959 <NA> <NA> <NA>
2367 chr1.19815983.19816290 MIRb SINE SINE
2368 chr1.19825189.19825673 L2 LINE LINE
2369 chr1.19860985.19861537 MIRb SINE SINE
2370 chr1.19866856.19867144 <NA> <NA> <NA>
2371 chr1.19869624.19870457 AluJr SINE SINE
2372 chr1.19869624.19870457 L1ME3Cz LINE LINE
2373 chr1.19869624.19870457 AluSx SINE SINE
2374 chr1.19881970.19883109 MIRb SINE SINE
2375 chr1.19881970.19883109 (GCG)n Other Simple_repeat
2376 chr1.19881970.19883109 L2b LINE LINE
2377 chr1.19918102.19918566 AluSp SINE SINE
2378 chr1.19918614.19919139 AluSp SINE SINE
2379 chr1.19948848.19949307 L1PREC2 LINE LINE
2380 chr1.19948848.19949307 LTR79 LTR LTR
2381 chr1.19974837.19975474 MIRc SINE SINE
2382 chr1.19974837.19975474 FLAM_C SINE SINE
2383 chr1.20069991.20070354 <NA> <NA> <NA>
2384 chr1.20100802.20101399 L2b LINE LINE
2385 chr1.20100802.20101399 AluJr SINE SINE
2386 chr1.20124331.20124959 MIRb SINE SINE
2387 chr1.20124331.20124959 MIR SINE SINE
2388 chr1.20126494.20126828 MIRb SINE SINE
2389 chr1.20126494.20126828 L2b LINE LINE
2390 chr1.20144739.20145065 MER53 DNA DNA
2391 chr1.20144739.20145065 AluSz SINE SINE
2392 chr1.20152013.20152768 MIRb SINE SINE
2393 chr1.20164527.20165801 L2a LINE LINE
2394 chr1.20164527.20165801 (TG)n Other Simple_repeat
2395 chr1.20185790.20186700 MIR3 SINE SINE
2396 chr1.20185790.20186700 (CCCCA)n Other Simple_repeat
2397 chr1.20195035.20195568 L2 LINE LINE
2398 chr1.20212647.20213399 MIR3 SINE SINE
2399 chr1.20212647.20213399 (A)n Other Simple_repeat
2400 chr1.20216740.20216916 MLT1I LTR LTR
2401 chr1.20265261.20265931 MamSINE1 SINE SINE
2402 chr1.20265261.20265931 (AG)n Other Simple_repeat
2403 chr1.20265261.20265931 MIRb SINE SINE
2404 chr1.20279434.20279889 L2a LINE LINE
2405 chr1.20281889.20282160 L2b LINE LINE
2406 chr1.20290490.20291507 GA-rich Other Low_complexity
2407 chr1.20290490.20291507 (GT)n Other Simple_repeat
2408 chr1.20290490.20291507 (CT)n Other Simple_repeat
2409 chr1.20308339.20308928 <NA> <NA> <NA>
2410 chr1.20342762.20343409 (CGCGAG)n Other Simple_repeat
2411 chr1.20358588.20359218 <NA> <NA> <NA>
2412 chr1.20361919.20362419 <NA> <NA> <NA>
2413 chr1.20366970.20367816 GA-rich Other Low_complexity
2414 chr1.20366970.20367816 L2a LINE LINE
2415 chr1.20375661.20375828 <NA> <NA> <NA>
2416 chr1.20376847.20377283 MIRb SINE SINE
2417 chr1.20411177.20411671 MamSINE1 SINE SINE
2418 chr1.20426879.20427387 MIRb SINE SINE
2419 chr1.20426879.20427387 MIR3 SINE SINE
2420 chr1.20430228.20430836 MIRb SINE SINE
2421 chr1.20430228.20430836 G-rich Other Low_complexity
2422 chr1.20439241.20439568 LTR16E1 LTR LTR
2423 chr1.20439241.20439568 MLT1K LTR LTR
2424 chr1.20443707.20444469 (CA)n Other Simple_repeat
2425 chr1.20453813.20454929 MIRb SINE SINE
2426 chr1.20473152.20473638 <NA> <NA> <NA>
2427 chr1.20483861.20484761 (CCAGCCT)n Other Simple_repeat
2428 chr1.20485256.20485828 G-rich Other Low_complexity
2429 chr1.20485256.20485828 (GC)n Other Simple_repeat
2430 chr1.20485256.20485828 (GCTGC)n Other Simple_repeat
2431 chr1.20486614.20486914 <NA> <NA> <NA>
2432 chr1.20493737.20494754 LTR88a LTR LTR
2433 chr1.20493737.20494754 L2a LINE LINE
2434 chr1.20496111.20496568 L2c LINE LINE
2435 chr1.20496111.20496568 MSTA LTR LTR
2436 chr1.20507419.20508360 L2a LINE LINE
2437 chr1.20522413.20522828 <NA> <NA> <NA>
2438 chr1.20551952.20553856 (GGGGA)n Other Simple_repeat
2439 chr1.20551952.20553856 (CCAGCC)n Other Simple_repeat
2440 chr1.20551952.20553856 (AGG)n Other Simple_repeat
2441 chr1.20575125.20575784 L2b LINE LINE
2442 chr1.20588742.20589170 <NA> <NA> <NA>
2443 chr1.20601533.20601791 <NA> <NA> <NA>
2444 chr1.20604217.20604734 MLT1A0 LTR LTR
2445 chr1.20613540.20614275 L2c LINE LINE
2446 chr1.20613540.20614275 (GCAG)n Other Simple_repeat
2447 chr1.20613540.20614275 L2a LINE LINE
2448 chr1.20633096.20634938 MIR3 SINE SINE
2449 chr1.20633096.20634938 MIRb SINE SINE
2450 chr1.20633096.20634938 (CGG)n Other Simple_repeat
2451 chr1.20633096.20634938 (GGCTCG)n Other Simple_repeat
2452 chr1.20633096.20634938 MIRb SINE SINE
2453 chr1.20633096.20634938 MLT2D LTR LTR
2454 chr1.20633096.20634938 MIR3 SINE SINE
2455 chr1.20640093.20640717 L2b LINE LINE
2456 chr1.20640093.20640717 L2b LINE LINE
2457 chr1.20643387.20643850 L2a LINE LINE
2458 chr1.20643387.20643850 L2b LINE LINE
2459 chr1.20643387.20643850 MIRb SINE SINE
2460 chr1.20643387.20643850 MER44A DNA DNA
2461 chr1.20660634.20662134 MIR1_Amn SINE SINE
2462 chr1.20696398.20697368 AluJr SINE SINE
2463 chr1.20698417.20698866 L2a LINE LINE
2464 chr1.20698417.20698866 L2a LINE LINE
2465 chr1.20702498.20702866 L2c LINE LINE
2466 chr1.20705393.20705680 MIRb SINE SINE
2467 chr1.20705393.20705680 LTR64 LTR LTR
2468 chr1.20717350.20718521 G-rich Other Low_complexity
2469 chr1.20717350.20718521 AluSq2 SINE SINE
2470 chr1.20724930.20725723 MIR SINE SINE
2471 chr1.20724930.20725723 L2b LINE LINE
2472 chr1.20724930.20725723 L2b LINE LINE
2473 chr1.20731959.20733773 (GCGCCCC)n Other Simple_repeat
2474 chr1.20731959.20733773 MIRb SINE SINE
2475 chr1.20731959.20733773 AluJo SINE SINE
2476 chr1.20731959.20733773 AluJb SINE SINE
2477 chr1.20731959.20733773 AluJb SINE SINE
2478 chr1.20739826.20740152 AluSx SINE SINE
2479 chr1.20767042.20767754 AluSx1 SINE SINE
2480 chr1.20767042.20767754 MIR SINE SINE
2481 chr1.20767042.20767754 MIRb SINE SINE
2482 chr1.20786062.20788011 (CGCCGC)n Other Simple_repeat
2483 chr1.20820465.20820979 MER52C LTR LTR
2484 chr1.20885084.20885570 MER1B DNA DNA
2485 chr1.20885084.20885570 MIRb SINE SINE
2486 chr1.20893799.20894546 MER85 DNA DNA
2487 chr1.20896749.20897237 Tigger3b DNA DNA
2488 chr1.20921387.20921734 <NA> <NA> <NA>
2489 chr1.20962662.20963074 Tigger2b_Pri DNA DNA
2490 chr1.20962662.20963074 FLAM_C SINE SINE
2491 chr1.20962662.20963074 Tigger2b_Pri DNA DNA
2492 chr1.20978293.20978722 Tigger7 DNA DNA
2493 chr1.20978293.20978722 Tigger7 DNA DNA
2494 chr1.20981825.20982571 (TATA)n Other Simple_repeat
2495 chr1.21021280.21021622 AluSz6 SINE SINE
2496 chr1.21021280.21021622 AluSx SINE SINE
2497 chr1.21022220.21022789 <NA> <NA> <NA>
2498 chr1.21035064.21036395 MER52D LTR LTR
2499 chr1.21035064.21036395 MER52D LTR LTR
2500 chr1.21035064.21036395 MER52D LTR LTR
2501 chr1.21058216.21058623 MER102c DNA DNA
2502 chr1.21058216.21058623 AluJb SINE SINE
2503 chr1.21072771.21073132 MIR SINE SINE
2504 chr1.21091128.21091479 AluSz6 SINE SINE
2505 chr1.21113039.21113134 FRAM SINE SINE
2506 chr1.21117600.21118219 (A)n Other Simple_repeat
2507 chr1.21139567.21139909 FAM SINE SINE
2508 chr1.21149477.21150255 <NA> <NA> <NA>
2509 chr1.21151902.21152946 AluJb SINE SINE
2510 chr1.21151902.21152946 Charlie1a DNA DNA
2511 chr1.21151902.21152946 AluJr4 SINE SINE
2512 chr1.21175748.21176227 (CCG)n Other Simple_repeat
2513 chr1.21176556.21177458 (CGC)n Other Simple_repeat
2514 chr1.21176556.21177458 MIRb SINE SINE
2515 chr1.21194876.21195602 AluJb SINE SINE
2516 chr1.21194876.21195602 MIRb SINE SINE
2517 chr1.21194876.21195602 MIRc SINE SINE
2518 chr1.21194876.21195602 AluJb SINE SINE
2519 chr1.21200689.21201227 AluJb SINE SINE
2520 chr1.21200689.21201227 L1MCa LINE LINE
2521 chr1.21200689.21201227 MLT2B4 LTR LTR
2522 chr1.21200689.21201227 AluSp SINE SINE
2523 chr1.21217691.21218543 <NA> <NA> <NA>
2524 chr1.21225108.21225523 <NA> <NA> <NA>
2525 chr1.21232072.21232405 AluJr SINE SINE
2526 chr1.21234819.21235119 AluSz6 SINE SINE
2527 chr1.21237666.21238299 MIRb SINE SINE
2528 chr1.21238499.21238719 MIRb SINE SINE
2529 chr1.21251918.21252513 <NA> <NA> <NA>
2530 chr1.21254999.21255639 <NA> <NA> <NA>
2531 chr1.21261651.21263078 L2b LINE LINE
2532 chr1.21261651.21263078 L2c LINE LINE
2533 chr1.21266294.21266501 <NA> <NA> <NA>
2534 chr1.21269510.21270466 MIRb SINE SINE
2535 chr1.21269510.21270466 MIRb SINE SINE
2536 chr1.21269510.21270466 (AGAACC)n Other Simple_repeat
2537 chr1.21269510.21270466 MIRb SINE SINE
2538 chr1.21269510.21270466 MIRc SINE SINE
2539 chr1.21280049.21280763 L2b LINE LINE
2540 chr1.21289346.21290551 MER81 DNA DNA
2541 chr1.21289346.21290551 (GGCAGC)n Other Simple_repeat
2542 chr1.21289346.21290551 (GCC)n Other Simple_repeat
2543 chr1.21294818.21295287 MIR SINE SINE
2544 chr1.21294818.21295287 FLAM_C SINE SINE
2545 chr1.21297975.21298253 AluJo SINE SINE
2546 chr1.21302611.21303151 <NA> <NA> <NA>
2547 chr1.21303166.21303610 MIR SINE SINE
2548 chr1.21303166.21303610 Charlie8 DNA DNA
2549 chr1.21308863.21309594 MIR SINE SINE
2550 chr1.21308863.21309594 (TGAA)n Other Simple_repeat
2551 chr1.21312546.21313494 AluJr4 SINE SINE
2552 chr1.21312546.21313494 MIR SINE SINE
2553 chr1.21312546.21313494 MIRb SINE SINE
2554 chr1.21318653.21318964 <NA> <NA> <NA>
2555 chr1.21320525.21320833 MIRb SINE SINE
2556 chr1.21324201.21324999 FAM SINE SINE
2557 chr1.21331990.21332294 <NA> <NA> <NA>
2558 chr1.21332800.21333176 MIRb SINE SINE
2559 chr1.21334277.21334961 MIR3 SINE SINE
2560 chr1.21334277.21334961 L2 LINE LINE
2561 chr1.21344679.21346065 (GCTCCCG)n Other Simple_repeat
2562 chr1.21344679.21346065 (TG)n Other Simple_repeat
2563 chr1.21344679.21346065 (CG)n Other Simple_repeat
2564 chr1.21344679.21346065 (TG)n Other Simple_repeat
2565 chr1.21353891.21354056 L3 LINE LINE
2566 chr1.21368361.21369188 AluSx SINE SINE
2567 chr1.21368361.21369188 (CCTT)n Other Simple_repeat
2568 chr1.21368361.21369188 L3b LINE LINE
2569 chr1.21368361.21369188 L2a LINE LINE
2570 chr1.21368361.21369188 MIRb SINE SINE
2571 chr1.21370636.21370975 AluSx1 SINE SINE
2572 chr1.21386361.21386966 L1MC4 LINE LINE
2573 chr1.21386361.21386966 MER41B LTR LTR
2574 chr1.21386361.21386966 AluSx1 SINE SINE
2575 chr1.21386361.21386966 MER41B LTR LTR
2576 chr1.21386361.21386966 (CCTCTC)n Other Simple_repeat
2577 chr1.21439789.21440460 (GCAGGC)n Other Simple_repeat
2578 chr1.21439789.21440460 G-rich Other Low_complexity
2579 chr1.21452104.21452431 L3 LINE LINE
2580 chr1.21454003.21454244 LTR16B2 LTR LTR
2581 chr1.21472055.21472589 MIRc SINE SINE
2582 chr1.21490667.21491377 LTR28C LTR LTR
2583 chr1.21491765.21492530 MIRb SINE SINE
2584 chr1.21491765.21492530 L2b LINE LINE
2585 chr1.21497707.21498145 MIR SINE SINE
2586 chr1.21503635.21504239 FLAM_A SINE SINE
2587 chr1.21508862.21509304 (GACAGA)n Other Simple_repeat
2588 chr1.21508862.21509304 G-rich Other Low_complexity
2589 chr1.21511656.21512294 MIRc SINE SINE
2590 chr1.21511656.21512294 MIRb SINE SINE
2591 chr1.21519535.21519780 AluSz SINE SINE
2592 chr1.21534741.21535234 MIRb SINE SINE
2593 chr1.21534741.21535234 L2a LINE LINE
2594 chr1.21538136.21538624 MIR SINE SINE
2595 chr1.21538136.21538624 MIRc SINE SINE
2596 chr1.21552676.21553053 FLAM_A SINE SINE
2597 chr1.21552676.21553053 L1ME4a LINE LINE
2598 chr1.21553676.21553936 L2a LINE LINE
2599 chr1.21564822.21564991 MIRb SINE SINE
2600 chr1.21568244.21568686 <NA> <NA> <NA>
2601 chr1.21573914.21575111 MIRb SINE SINE
2602 chr1.21579829.21580199 MIR SINE SINE
2603 chr1.21579829.21580199 AluJr SINE SINE
2604 chr1.21586761.21587528 MIR SINE SINE
2605 chr1.21586761.21587528 G-rich Other Low_complexity
2606 chr1.21594581.21594845 MIR SINE SINE
2607 chr1.21594581.21594845 G-rich Other Low_complexity
2608 chr1.21604535.21604788 L2b LINE LINE
2609 chr1.21607651.21608276 <NA> <NA> <NA>
2610 chr1.21618885.21619673 L2b LINE LINE
2611 chr1.21618885.21619673 (AGAGAC)n Other Simple_repeat
2612 chr1.21622470.21622716 (GCCCG)n Other Simple_repeat
2613 chr1.21622470.21622716 (GGCTCCG)n Other Simple_repeat
2614 chr1.21622470.21622716 (GGCGG)n Other Simple_repeat
2615 chr1.21630993.21631378 MIRc SINE SINE
2616 chr1.21631834.21632532 MIRc SINE SINE
2617 chr1.21631834.21632532 MIR3 SINE SINE
2618 chr1.21631834.21632532 MIRc SINE SINE
2619 chr1.21638422.21639173 AluSz SINE SINE
2620 chr1.21638422.21639173 L1ME4a LINE LINE
2621 chr1.21638422.21639173 MIRb SINE SINE
2622 chr1.21641974.21642717 MIRb SINE SINE
2623 chr1.21641974.21642717 MIR SINE SINE
2624 chr1.21647911.21648229 MIR3 SINE SINE
2625 chr1.21651170.21652020 (CA)n Other Simple_repeat
2626 chr1.21651170.21652020 (CACACAG)n Other Simple_repeat
2627 chr1.21651170.21652020 (AC)n Other Simple_repeat
2628 chr1.21651170.21652020 (CACACAG)n Other Simple_repeat
2629 chr1.21651170.21652020 (CG)n Other Simple_repeat
2630 chr1.21651170.21652020 (CGCCC)n Other Simple_repeat
2631 chr1.21651170.21652020 G-rich Other Low_complexity
2632 chr1.21655866.21656040 MIR3 SINE SINE
2633 chr1.21659118.21660054 AluSp SINE SINE
2634 chr1.21659118.21660054 MIRc SINE SINE
2635 chr1.21659118.21660054 MIR SINE SINE
2636 chr1.21659118.21660054 (CTGCC)n Other Simple_repeat
2637 chr1.21669144.21670060 (CCG)n Other Simple_repeat
2638 chr1.21669144.21670060 (CCCCG)n Other Simple_repeat
2639 chr1.21669144.21670060 MIR3 SINE SINE
2640 chr1.21669144.21670060 MIRc SINE SINE
2641 chr1.21703343.21703979 AluJr4 SINE SINE
2642 chr1.21706616.21706811 <NA> <NA> <NA>
2643 chr1.21725824.21726303 <NA> <NA> <NA>
2644 chr1.21742623.21742928 <NA> <NA> <NA>
2645 chr1.21764694.21765304 AluSg7 SINE SINE
2646 chr1.21764694.21765304 MER21B LTR LTR
2647 chr1.21782230.21784104 (CCG)n Other Simple_repeat
2648 chr1.21782230.21784104 MIR1_Amn SINE SINE
2649 chr1.21782230.21784104 AluSp SINE SINE
2650 chr1.21791763.21791971 MER41B LTR LTR
2651 chr1.21791763.21791971 AluY SINE SINE
2652 chr1.21804549.21804984 MIR SINE SINE
2653 chr1.21804549.21804984 MIRb SINE SINE
2654 chr1.21804549.21804984 AluSx SINE SINE
2655 chr1.21804549.21804984 (AAAAC)n Other Simple_repeat
2656 chr1.21814369.21815575 MIR SINE SINE
2657 chr1.21814369.21815575 FLAM_C SINE SINE
2658 chr1.21816734.21817219 L2a LINE LINE
2659 chr1.21822182.21822806 G-rich Other Low_complexity
2660 chr1.21823305.21823900 <NA> <NA> <NA>
2661 chr1.21828849.21829543 MIRc SINE SINE
2662 chr1.21830123.21830587 AluSq SINE SINE
2663 chr1.21841241.21841885 MIRb SINE SINE
2664 chr1.21852993.21853644 MIRc SINE SINE
2665 chr1.21852993.21853644 AluY SINE SINE
2666 chr1.21855295.21856201 L2a LINE LINE
2667 chr1.21861017.21861285 L2b LINE LINE
2668 chr1.21861017.21861285 L2b LINE LINE
2669 chr1.21861017.21861285 L2c LINE LINE
2670 chr1.21862122.21862520 L1ME3Cz LINE LINE
2671 chr1.21862122.21862520 AluSx SINE SINE
2672 chr1.21866359.21866656 MLT1K LTR LTR
2673 chr1.21866359.21866656 MLT1K LTR LTR
2674 chr1.21869709.21870250 <NA> <NA> <NA>
2675 chr1.21874708.21876224 MIRb SINE SINE
2676 chr1.21874708.21876224 LTR16A1 LTR LTR
2677 chr1.21874708.21876224 MIRb SINE SINE
2678 chr1.21874708.21876224 L2c LINE LINE
2679 chr1.21880319.21880663 <NA> <NA> <NA>
2680 chr1.21882485.21882763 MER3 DNA DNA
2681 chr1.21882485.21882763 MADE1 DNA DNA
2682 chr1.21882485.21882763 MER3 DNA DNA
2683 chr1.21882485.21882763 L3 LINE LINE
2684 chr1.21885575.21886249 (GACAGA)n Other Simple_repeat
2685 chr1.21896673.21897222 <NA> <NA> <NA>
2686 chr1.21901451.21901810 (CCTG)n Other Simple_repeat
2687 chr1.21904752.21905251 L2a LINE LINE
2688 chr1.21904752.21905251 (AC)n Other Simple_repeat
2689 chr1.21904752.21905251 L2a LINE LINE
2690 chr1.21904752.21905251 (AC)n Other Simple_repeat
2691 chr1.21909645.21910327 <NA> <NA> <NA>
2692 chr1.21911248.21911817 (GCCCA)n Other Simple_repeat
2693 chr1.21915369.21915649 MIRb SINE SINE
2694 chr1.21919595.21919959 MIR SINE SINE
2695 chr1.21919595.21919959 MER5A1 DNA DNA
2696 chr1.21919595.21919959 MIR SINE SINE
2697 chr1.21919595.21919959 AluSz SINE SINE
2698 chr1.21920230.21921526 MIRb SINE SINE
2699 chr1.21920230.21921526 (AATAAC)n Other Simple_repeat
2700 chr1.21920230.21921526 MIRb SINE SINE
2701 chr1.21924699.21924995 L2c LINE LINE
2702 chr1.21930089.21930535 L2a LINE LINE
2703 chr1.21930089.21930535 AluSz SINE SINE
2704 chr1.21930989.21931768 <NA> <NA> <NA>
2705 chr1.21935266.21936974 L2b LINE LINE
2706 chr1.21935266.21936974 L2c LINE LINE
2707 chr1.21935266.21936974 MIRb SINE SINE
2708 chr1.21937182.21937752 (GGCCCGC)n Other Simple_repeat
2709 chr1.21937182.21937752 G-rich Other Low_complexity
2710 chr1.21939666.21940286 <NA> <NA> <NA>
2711 chr1.21942403.21943540 MER103C DNA DNA
2712 chr1.21942403.21943540 AluY SINE SINE
2713 chr1.21942403.21943540 Charlie10a DNA DNA
2714 chr1.21942403.21943540 AluSq2 SINE SINE
2715 chr1.21944466.21944842 <NA> <NA> <NA>
2716 chr1.21955557.21956277 MIRb SINE SINE
2717 chr1.21956537.21957382 MIRc SINE SINE
2718 chr1.21963870.21964396 L2b LINE LINE
2719 chr1.21963870.21964396 AluSx4 SINE SINE
2720 chr1.21968740.21969275 LTR33A_ LTR LTR
2721 chr1.21968740.21969275 AluJb SINE SINE
2722 chr1.21974659.21975103 AluSp SINE SINE
2723 chr1.21974659.21975103 MIR3 SINE SINE
2724 chr1.21980516.21981191 MER91C DNA DNA
2725 chr1.21994141.21994774 LTR33A_ LTR LTR
2726 chr1.21994141.21994774 AluJb SINE SINE
2727 chr1.21999603.21999968 AluSp SINE SINE
2728 chr1.21999603.21999968 MIR3 SINE SINE
2729 chr1.22005150.22006031 MER91C DNA DNA
2730 chr1.22005150.22006031 MIR3 SINE SINE
2731 chr1.22019065.22019554 <NA> <NA> <NA>
2732 chr1.22024901.22026263 AluSx1 SINE SINE
2733 chr1.22024901.22026263 MIRb SINE SINE
2734 chr1.22024901.22026263 MIRb SINE SINE
2735 chr1.22031359.22031984 AluY SINE SINE
2736 chr1.22039653.22040200 AluSc SINE SINE
2737 chr1.22039653.22040200 (AACAA)n Other Simple_repeat
2738 chr1.22039653.22040200 MIRc SINE SINE
2739 chr1.22052374.22053893 AluSx1 SINE SINE
2740 chr1.22052374.22053893 MIRc SINE SINE
2741 chr1.22052374.22053893 (GGCGG)n Other Simple_repeat
2742 chr1.22052374.22053893 (GCG)n Other Simple_repeat
2743 chr1.22077839.22078073 <NA> <NA> <NA>
2744 chr1.22092251.22092610 <NA> <NA> <NA>
2745 chr1.22096146.22096659 AluSx3 SINE SINE
2746 chr1.22105601.22105931 MIRb SINE SINE
2747 chr1.22111644.22112149 GA-rich Other Low_complexity
2748 chr1.22111644.22112149 MIRc SINE SINE
2749 chr1.22112595.22113240 MIRb SINE SINE
2750 chr1.22114548.22114977 <NA> <NA> <NA>
2751 chr1.22120130.22120501 <NA> <NA> <NA>
2752 chr1.22121266.22121962 MIR SINE SINE
2753 chr1.22122372.22122800 MIRb SINE SINE
2754 chr1.22126472.22126958 MIRb SINE SINE
2755 chr1.22126472.22126958 MIR SINE SINE
2756 chr1.22131783.22132786 MIR3 SINE SINE
2757 chr1.22133234.22134326 L2b LINE LINE
2758 chr1.22141824.22142926 (CAGCG)n Other Simple_repeat
2759 chr1.22143078.22143495 (TGCCCGC)n Other Simple_repeat
2760 chr1.22143078.22143495 (GCG)n Other Simple_repeat
2761 chr1.22143078.22143495 (GCGG)n Other Simple_repeat
2762 chr1.22143685.22143957 MIRc SINE SINE
2763 chr1.22209214.22209589 L2a LINE LINE
2764 chr1.22216176.22216744 MLT1E2 LTR LTR
2765 chr1.22222267.22222468 <NA> <NA> <NA>
2766 chr1.22229339.22229883 MIRb SINE SINE
2767 chr1.22241232.22241594 L1MB8 LINE LINE
2768 chr1.22250687.22251204 MIRb SINE SINE
2769 chr1.22250687.22251204 (TCC)n Other Simple_repeat
2770 chr1.22255544.22256118 LTR33 LTR LTR
2771 chr1.22255544.22256118 AluSz6 SINE SINE
2772 chr1.22273743.22274154 MIR SINE SINE
2773 chr1.22273743.22274154 MIR SINE SINE
2774 chr1.22275714.22276384 MIRb SINE SINE
2775 chr1.22317257.22317876 MIRb SINE SINE
2776 chr1.22317257.22317876 AluJr SINE SINE
2777 chr1.22333155.22333389 MIRc SINE SINE
2778 chr1.22341956.22342554 (AGAGAC)n Other Simple_repeat
2779 chr1.22362793.22363355 MIRb SINE SINE
2780 chr1.22375814.22376353 MIRb SINE SINE
2781 chr1.22380419.22380640 <NA> <NA> <NA>
2782 chr1.22383854.22384012 L2c LINE LINE
2783 chr1.22388685.22389522 MIR SINE SINE
2784 chr1.22388685.22389522 L2a LINE LINE
2785 chr1.22388685.22389522 L2b LINE LINE
2786 chr1.22388685.22389522 MIRc SINE SINE
2787 chr1.22388685.22389522 MamTip2 DNA DNA
2788 chr1.22400612.22401201 L2b LINE LINE
2789 chr1.22407126.22407443 MIRb SINE SINE
2790 chr1.22407126.22407443 A-rich Other Low_complexity
2791 chr1.22412615.22413342 MIRc SINE SINE
2792 chr1.22412615.22413342 MIR1_Amn SINE SINE
2793 chr1.22412615.22413342 (GT)n Other Simple_repeat
2794 chr1.22412615.22413342 GA-rich Other Low_complexity
2795 chr1.22412615.22413342 MIRb SINE SINE
2796 chr1.22416447.22417032 MIRc SINE SINE
2797 chr1.22416447.22417032 MIR3 SINE SINE
2798 chr1.22418716.22419427 L2c LINE LINE
2799 chr1.22418716.22419427 (GGAT)n Other Simple_repeat
2800 chr1.22418716.22419427 MIRb SINE SINE
2801 chr1.22420378.22420828 MIRc SINE SINE
2802 chr1.22447577.22448130 L2 LINE LINE
2803 chr1.22451685.22452869 MER58B DNA DNA
2804 chr1.22465042.22465619 MER52C LTR LTR
2805 chr1.22471123.22471909 MamRep605 Other LTR?
2806 chr1.22471123.22471909 MIR SINE SINE
2807 chr1.22471123.22471909 LTR53 LTR LTR
2808 chr1.22487815.22488079 L2c LINE LINE
2809 chr1.22488179.22488810 L2a LINE LINE
2810 chr1.22500277.22500807 L2 LINE LINE
2811 chr1.22527193.22527607 <NA> <NA> <NA>
2812 chr1.22527617.22528188 <NA> <NA> <NA>
2813 chr1.22556310.22556598 GA-rich Other Low_complexity
2814 chr1.22563164.22563489 (CGG)n Other Simple_repeat
2815 chr1.22563903.22564179 <NA> <NA> <NA>
2816 chr1.22575549.22575994 L1MB3 LINE LINE
2817 chr1.22575549.22575994 L2 LINE LINE
2818 chr1.22575549.22575994 MIRb SINE SINE
2819 chr1.22578209.22580071 <NA> <NA> <NA>
2820 chr1.22582657.22583268 MIR3 SINE SINE
2821 chr1.22601816.22602380 (TG)n Other Simple_repeat
2822 chr1.22611520.22611947 <NA> <NA> <NA>
2823 chr1.22625532.22626177 MLT1I LTR LTR
2824 chr1.22641759.22642606 MIRb SINE SINE
2825 chr1.22649825.22650530 <NA> <NA> <NA>
2826 chr1.22662348.22662742 L2b LINE LINE
2827 chr1.22674040.22674514 MamSINE1 SINE SINE
2828 chr1.22674040.22674514 MIR SINE SINE
2829 chr1.22677971.22679084 MIRb SINE SINE
2830 chr1.22677971.22679084 (AC)n Other Simple_repeat
2831 chr1.22685305.22686105 <NA> <NA> <NA>
2832 chr1.22689543.22689897 MIR3 SINE SINE
2833 chr1.22704244.22704952 MIR SINE SINE
2834 chr1.22704244.22704952 L1ME4a LINE LINE
2835 chr1.22710178.22710585 <NA> <NA> <NA>
2836 chr1.22710757.22710989 G-rich Other Low_complexity
2837 chr1.22711551.22712387 MIRc SINE SINE
2838 chr1.22723033.22723544 <NA> <NA> <NA>
2839 chr1.22735095.22735888 AluJr SINE SINE
2840 chr1.22739573.22740181 <NA> <NA> <NA>
2841 chr1.22750180.22751162 MER113 DNA DNA
2842 chr1.22750180.22751162 MIR SINE SINE
2843 chr1.22750180.22751162 MER113 DNA DNA
2844 chr1.22750180.22751162 MIR3 SINE SINE
2845 chr1.22756245.22756821 <NA> <NA> <NA>
2846 chr1.22780778.22781034 <NA> <NA> <NA>
2847 chr1.22790319.22790859 <NA> <NA> <NA>
2848 chr1.22804474.22804718 <NA> <NA> <NA>
2849 chr1.22805278.22805572 <NA> <NA> <NA>
2850 chr1.22808844.22809304 MIR SINE SINE
2851 chr1.22817574.22817878 <NA> <NA> <NA>
2852 chr1.22818930.22819284 MIR3 SINE SINE
2853 chr1.22818930.22819284 (TC)n Other Simple_repeat
2854 chr1.22826569.22826974 L2b LINE LINE
2855 chr1.22827638.22828374 MIRb SINE SINE
2856 chr1.22829076.22829459 <NA> <NA> <NA>
2857 chr1.22831887.22832546 MIRb SINE SINE
2858 chr1.22831887.22832546 MIRc SINE SINE
2859 chr1.22841070.22841644 L2b LINE LINE
2860 chr1.22841070.22841644 MIR3 SINE SINE
2861 chr1.22845051.22845741 MIR SINE SINE
2862 chr1.22845051.22845741 (AC)n Other Simple_repeat
2863 chr1.22861770.22862374 MIRc SINE SINE
2864 chr1.22861770.22862374 MIRb SINE SINE
2865 chr1.22864411.22864715 MLT1J LTR LTR
2866 chr1.22870248.22871063 MIRb SINE SINE
2867 chr1.22870248.22871063 L2b LINE LINE
2868 chr1.22870248.22871063 MIRb SINE SINE
2869 chr1.22870248.22871063 MIR SINE SINE
2870 chr1.22880002.22880670 MIR3 SINE SINE
2871 chr1.22880002.22880670 MIRb SINE SINE
2872 chr1.22886264.22886781 L2b LINE LINE
2873 chr1.22886264.22886781 AluSp SINE SINE
2874 chr1.22888866.22889442 AluJb SINE SINE
2875 chr1.22893514.22894136 MER117 DNA DNA
2876 chr1.22893514.22894136 MIRb SINE SINE
2877 chr1.22895395.22895830 <NA> <NA> <NA>
2878 chr1.22921100.22921982 G-rich Other Low_complexity
2879 chr1.22921100.22921982 MIRb SINE SINE
2880 chr1.22921100.22921982 L2a LINE LINE
2881 chr1.22930244.22930725 MIRb SINE SINE
2882 chr1.22952834.22954406 MER5C DNA DNA
2883 chr1.22952834.22954406 (CCAGCA)n Other Simple_repeat
2884 chr1.22952834.22954406 MIR3 SINE SINE
2885 chr1.22952834.22954406 UCON132b DNA DNA
2886 chr1.22963215.22963867 <NA> <NA> <NA>
2887 chr1.22964166.22964504 AluSx1 SINE SINE
2888 chr1.22964166.22964504 MLT1H2 LTR LTR
2889 chr1.22969179.22969655 L1M5 LINE LINE
2890 chr1.22971486.22972017 MIRb SINE SINE
2891 chr1.22976377.22976934 L2c LINE LINE
2892 chr1.22976377.22976934 MIRb SINE SINE
2893 chr1.22976377.22976934 L2 LINE LINE
2894 chr1.22976377.22976934 MIR SINE SINE
2895 chr1.22978233.22978795 AluSc8 SINE SINE
2896 chr1.22978233.22978795 L1MD LINE LINE
2897 chr1.22978233.22978795 (TTCA)n Other Simple_repeat
2898 chr1.22978233.22978795 L2b LINE LINE
2899 chr1.22978233.22978795 L2a LINE LINE
2900 chr1.22978233.22978795 AluJr SINE SINE
2901 chr1.23019033.23020381 L2c LINE LINE
2902 chr1.23019033.23020381 (GCGCGGC)n Other Simple_repeat
2903 chr1.23019033.23020381 (GGC)n Other Simple_repeat
2904 chr1.23020847.23021233 <NA> <NA> <NA>
2905 chr1.23044425.23044896 <NA> <NA> <NA>
2906 chr1.23078938.23079369 <NA> <NA> <NA>
2907 chr1.23097389.23097655 L2 LINE LINE
2908 chr1.23097389.23097655 AluJo SINE SINE
2909 chr1.23098637.23099041 L2 LINE LINE
2910 chr1.23100040.23100726 L2a LINE LINE
2911 chr1.23100040.23100726 Charlie15a DNA DNA
2912 chr1.23102105.23102726 MER58A DNA DNA
2913 chr1.23102105.23102726 AluJr SINE SINE
2914 chr1.23103134.23103612 AluJr SINE SINE
2915 chr1.23103134.23103612 CR1-3_Croc LINE LINE
2916 chr1.23103134.23103612 L3 LINE LINE
2917 chr1.23108996.23109379 <NA> <NA> <NA>
2918 chr1.23112165.23112428 MIR3 SINE SINE
2919 chr1.23114436.23114814 MIR3 SINE SINE
2920 chr1.23116194.23116439 AluJr SINE SINE
2921 chr1.23116194.23116439 AluJr4 SINE SINE
2922 chr1.23122350.23122639 <NA> <NA> <NA>
2923 chr1.23126796.23127127 <NA> <NA> <NA>
2924 chr1.23129955.23130188 <NA> <NA> <NA>
2925 chr1.23140750.23141535 <NA> <NA> <NA>
2926 chr1.23153086.23153549 A-rich Other Low_complexity
2927 chr1.23154213.23154632 L1ME1 LINE LINE
2928 chr1.23154213.23154632 AluJr SINE SINE
2929 chr1.23154213.23154632 AluY SINE SINE
2930 chr1.23167281.23169016 (GCCCGCG)n Other Simple_repeat
2931 chr1.23167281.23169016 (CCG)n Other Simple_repeat
2932 chr1.23177308.23178741 Charlie4z DNA DNA
2933 chr1.23177308.23178741 MIRb SINE SINE
2934 chr1.23177308.23178741 MIRb SINE SINE
2935 chr1.23177308.23178741 MIRb SINE SINE
2936 chr1.23177308.23178741 L2b LINE LINE
2937 chr1.23177308.23178741 L3 LINE LINE
2938 chr1.23184430.23184987 (TGTATA)n Other Simple_repeat
2939 chr1.23184430.23184987 AluJb SINE SINE
2940 chr1.23188637.23189299 L2c LINE LINE
2941 chr1.23188637.23189299 FAM SINE SINE
2942 chr1.23188637.23189299 AluSp SINE SINE
2943 chr1.23196804.23197462 MIRb SINE SINE
2944 chr1.23196804.23197462 AluSx1 SINE SINE
2945 chr1.23214733.23215138 L2a LINE LINE
2946 chr1.23214733.23215138 L2 LINE LINE
2947 chr1.23214733.23215138 AluJb SINE SINE
2948 chr1.23216871.23217917 (CGC)n Other Simple_repeat
2949 chr1.23216871.23217917 (CTC)n Other Simple_repeat
2950 chr1.23216871.23217917 L2a LINE LINE
2951 chr1.23224812.23225456 MIRc SINE SINE
2952 chr1.23343250.23345001 (CCACCC)n Other Simple_repeat
2953 chr1.23367898.23370081 A-rich Other Low_complexity
2954 chr1.23377080.23377739 L2b LINE LINE
2955 chr1.23383886.23384173 MIRc SINE SINE
2956 chr1.23384741.23385570 AluSx1 SINE SINE
2957 chr1.23384741.23385570 MIR3 SINE SINE
2958 chr1.23384741.23385570 Tigger12c DNA DNA
2959 chr1.23384741.23385570 Tigger12 DNA DNA
2960 chr1.23392884.23395345 MER1A DNA DNA
2961 chr1.23392884.23395345 (AC)n Other Simple_repeat
2962 chr1.23392884.23395345 MIR SINE SINE
2963 chr1.23392884.23395345 MIRb SINE SINE
2964 chr1.23392884.23395345 MER103C DNA DNA
2965 chr1.23392884.23395345 MIRc SINE SINE
2966 chr1.23392884.23395345 Tigger19a DNA DNA
2967 chr1.23392884.23395345 L1ME4c LINE LINE
2968 chr1.23402510.23403292 L2a LINE LINE
2969 chr1.23402510.23403292 (AATG)n Other Simple_repeat
2970 chr1.23402510.23403292 MIR SINE SINE
2971 chr1.23403608.23404318 MIRb SINE SINE
2972 chr1.23403608.23404318 MamRTE1 LINE LINE
2973 chr1.23403608.23404318 L2b LINE LINE
2974 chr1.23411495.23412154 LTR61 LTR LTR
2975 chr1.23417499.23418246 (CA)n Other Simple_repeat
2976 chr1.23417499.23418246 L2b LINE LINE
2977 chr1.23422363.23422696 <NA> <NA> <NA>
2978 chr1.23422942.23425300 MIRb SINE SINE
2979 chr1.23422942.23425300 (CCCCGC)n Other Simple_repeat
2980 chr1.23422942.23425300 (CCCCCG)n Other Simple_repeat
2981 chr1.23422942.23425300 (C)n Other Simple_repeat
2982 chr1.23422942.23425300 (GT)n Other Simple_repeat
2983 chr1.23444000.23444528 AluSc8 SINE SINE
2984 chr1.23444000.23444528 AluSx1 SINE SINE
2985 chr1.23444000.23444528 MIRb SINE SINE
2986 chr1.23449855.23450149 <NA> <NA> <NA>
2987 chr1.23469293.23469878 AluJo SINE SINE
2988 chr1.23469293.23469878 MIR SINE SINE
2989 chr1.23469293.23469878 L2 LINE LINE
2990 chr1.23469293.23469878 MIRb SINE SINE
2991 chr1.23475242.23475661 MLT1N2 LTR LTR
2992 chr1.23475242.23475661 L2b LINE LINE
2993 chr1.23478898.23479355 MLT1O LTR LTR
2994 chr1.23483106.23484957 CR1_Mam LINE LINE
2995 chr1.23483106.23484957 G-rich Other Low_complexity
2996 chr1.23483106.23484957 MIRb SINE SINE
2997 chr1.23496796.23497701 MER96 DNA DNA
2998 chr1.23496796.23497701 MIRb SINE SINE
2999 chr1.23496796.23497701 AluJb SINE SINE
3000 chr1.23528153.23528778 MIR3 SINE SINE
3001 chr1.23528153.23528778 MIRb SINE SINE
3002 chr1.23539562.23540359 AluSz SINE SINE
3003 chr1.23539562.23540359 MIRc SINE SINE
3004 chr1.23539562.23540359 MIR3 SINE SINE
3005 chr1.23539562.23540359 AluY SINE SINE
3006 chr1.23544168.23544374 AluJr SINE SINE
3007 chr1.23544168.23544374 MIRb SINE SINE
3008 chr1.23544631.23545246 MIR SINE SINE
3009 chr1.23554361.23555309 (GAAG)n Other Simple_repeat
3010 chr1.23554361.23555309 (GAGCCA)n Other Simple_repeat
3011 chr1.23554361.23555309 MIRb SINE SINE
3012 chr1.23556092.23556655 MIR1_Amn SINE SINE
3013 chr1.23556092.23556655 MIRb SINE SINE
3014 chr1.23558126.23559811 MIRc SINE SINE
3015 chr1.23562162.23562611 <NA> <NA> <NA>
3016 chr1.23564601.23564917 AluSz SINE SINE
3017 chr1.23568183.23569165 <NA> <NA> <NA>
3018 chr1.23575437.23575877 <NA> <NA> <NA>
3019 chr1.23577013.23577928 MIR3 SINE SINE
3020 chr1.23577013.23577928 (A)n Other Simple_repeat
3021 chr1.23585594.23585993 <NA> <NA> <NA>
3022 chr1.23586662.23587050 MIR SINE SINE
3023 chr1.23586662.23587050 AluSx SINE SINE
3024 chr1.23586662.23587050 AluJb SINE SINE
3025 chr1.23592575.23593204 AluJr SINE SINE
3026 chr1.23592575.23593204 MIRb SINE SINE
3027 chr1.23592575.23593204 L2 LINE LINE
3028 chr1.23592575.23593204 L2 LINE LINE
3029 chr1.23593634.23593937 L2b LINE LINE
3030 chr1.23597765.23598093 L2a LINE LINE
3031 chr1.23619342.23620011 MIRc SINE SINE
3032 chr1.23619342.23620011 (CCG)n Other Simple_repeat
3033 chr1.23619342.23620011 (GGCGTG)n Other Simple_repeat
3034 chr1.23619342.23620011 (CCCCTCC)n Other Simple_repeat
3035 chr1.23634872.23635477 MIR SINE SINE
3036 chr1.23637374.23638126 AluSg7 SINE SINE
3037 chr1.23637374.23638126 MIRc SINE SINE
3038 chr1.23643948.23644401 MER45A DNA DNA
3039 chr1.23645711.23646400 MIRc SINE SINE
3040 chr1.23645711.23646400 MIRb SINE SINE
3041 chr1.23651048.23651684 MLT1O LTR LTR
3042 chr1.23651048.23651684 MIR3 SINE SINE
3043 chr1.23657745.23658092 <NA> <NA> <NA>
3044 chr1.23665136.23665551 AluSz SINE SINE
3045 chr1.23673054.23673694 FLAM_C SINE SINE
3046 chr1.23673054.23673694 L1M5 LINE LINE
3047 chr1.23673054.23673694 L2a LINE LINE
3048 chr1.23691561.23692695 <NA> <NA> <NA>
3049 chr1.23696692.23696901 <NA> <NA> <NA>
3050 chr1.23718463.23718916 L2a LINE LINE
3051 chr1.23742927.23745070 MIRb SINE SINE
3052 chr1.23742927.23745070 G-rich Other Low_complexity
3053 chr1.23742927.23745070 AluSg7 SINE SINE
3054 chr1.23751147.23751765 <NA> <NA> <NA>
3055 chr1.23756794.23757250 <NA> <NA> <NA>
3056 chr1.23758943.23759712 AluJo SINE SINE
3057 chr1.23758943.23759712 MIRb SINE SINE
3058 chr1.23768637.23769016 MER20 DNA DNA
3059 chr1.23768637.23769016 MLT1I LTR LTR
3060 chr1.23772039.23772559 AluJb SINE SINE
3061 chr1.23772039.23772559 Tigger5b DNA DNA
3062 chr1.23772039.23772559 Tigger7 DNA DNA
3063 chr1.23777876.23778838 MIRb SINE SINE
3064 chr1.23777876.23778838 (C)n Other Simple_repeat
3065 chr1.23777876.23778838 (GAGGC)n Other Simple_repeat
3066 chr1.23777876.23778838 MIR1_Amn SINE SINE
3067 chr1.23779839.23780329 <NA> <NA> <NA>
3068 chr1.23790174.23790532 AluYk3 SINE SINE
3069 chr1.23790174.23790532 MIRc SINE SINE
3070 chr1.23790827.23792869 G-rich Other Low_complexity
3071 chr1.23799423.23801278 MIRb SINE SINE
3072 chr1.23799423.23801278 (CCCCCG)n Other Simple_repeat
3073 chr1.23807432.23807752 L2c LINE LINE
3074 chr1.23809653.23810125 MLT1C LTR LTR
3075 chr1.23809653.23810125 MIRb SINE SINE
3076 chr1.23810881.23811144 <NA> <NA> <NA>
3077 chr1.23824800.23825813 MIRb SINE SINE
3078 chr1.23824800.23825813 MIR3 SINE SINE
3079 chr1.23824800.23825813 L2b LINE LINE
3080 chr1.23824800.23825813 AluSx1 SINE SINE
3081 chr1.23838101.23838853 LTR1A2 LTR LTR
3082 chr1.23838101.23838853 LTR1A2 LTR LTR
3083 chr1.23838101.23838853 L1MB4 LINE LINE
3084 chr1.23848882.23849615 AluSq2 SINE SINE
3085 chr1.23848882.23849615 AluSg SINE SINE
3086 chr1.23865566.23865876 <NA> <NA> <NA>
3087 chr1.23867337.23868813 MIR1_Amn SINE SINE
3088 chr1.23867337.23868813 MIR3 SINE SINE
3089 chr1.23867337.23868813 AluJb SINE SINE
3090 chr1.23875314.23875845 MamGypLTR1d LTR LTR
3091 chr1.23902865.23903346 (GGC)n Other Simple_repeat
3092 chr1.23902865.23903346 (AGCCT)n Other Simple_repeat
3093 chr1.23902865.23903346 AluJo SINE SINE
3094 chr1.23916779.23917245 MER5A DNA DNA
3095 chr1.23916779.23917245 AluJo SINE SINE
3096 chr1.23919970.23920462 (CAGCCC)n Other Simple_repeat
3097 chr1.23919970.23920462 MIR SINE SINE
3098 chr1.23930898.23931455 AluSq SINE SINE
3099 chr1.23951563.23952069 MIR1_Amn SINE SINE
3100 chr1.23951563.23952069 AluSq2 SINE SINE
3101 chr1.23958994.23960498 L2b LINE LINE
3102 chr1.23973458.23974044 AluJo SINE SINE
3103 chr1.23973458.23974044 L1ME3F LINE LINE
3104 chr1.23973458.23974044 AluSx3 SINE SINE
3105 chr1.23979822.23980871 (CTCCAC)n Other Simple_repeat
3106 chr1.23984469.23984752 <NA> <NA> <NA>
3107 chr1.23999041.23999762 THE1D LTR LTR
3108 chr1.23999041.23999762 L2c LINE LINE
3109 chr1.23999041.23999762 AluSz SINE SINE
3110 chr1.24009339.24010024 L2b LINE LINE
3111 chr1.24009339.24010024 L2 LINE LINE
3112 chr1.24015883.24016197 <NA> <NA> <NA>
3113 chr1.24018576.24019299 L2a LINE LINE
3114 chr1.24018576.24019299 MIRc SINE SINE
3115 chr1.24022534.24023012 MER67B LTR LTR
3116 chr1.24022534.24023012 (CCCACT)n Other Simple_repeat
3117 chr1.24022534.24023012 MER67B LTR LTR
3118 chr1.24028026.24028710 AluJr SINE SINE
3119 chr1.24028026.24028710 L1ME4b LINE LINE
3120 chr1.24028026.24028710 AluSx SINE SINE
3121 chr1.24046247.24047367 MIR SINE SINE
3122 chr1.24046247.24047367 AluJb SINE SINE
3123 chr1.24046247.24047367 Alu SINE SINE
3124 chr1.24046247.24047367 MER115 DNA DNA
3125 chr1.24052255.24052844 AluSp SINE SINE
3126 chr1.24070885.24071365 MER20B DNA DNA
3127 chr1.24077297.24077798 L2c LINE LINE
3128 chr1.24096051.24096816 MIR SINE SINE
3129 chr1.24096051.24096816 MIR3 SINE SINE
3130 chr1.24096051.24096816 GA-rich Other Low_complexity
3131 chr1.24096051.24096816 (GT)n Other Simple_repeat
3132 chr1.24107938.24108087 <NA> <NA> <NA>
3133 chr1.24108862.24109170 MIRc SINE SINE
3134 chr1.24108862.24109170 MIR3 SINE SINE
3135 chr1.24108862.24109170 L2b LINE LINE
3136 chr1.24112039.24112897 LTR32 LTR LTR
3137 chr1.24117709.24118208 AluSx1 SINE SINE
3138 chr1.24120125.24120874 <NA> <NA> <NA>
3139 chr1.24126071.24126742 MIR3 SINE SINE
3140 chr1.24126071.24126742 MIRc SINE SINE
3141 chr1.24136196.24136607 AluJb SINE SINE
3142 chr1.24136196.24136607 L2a LINE LINE
3143 chr1.24142697.24143644 L1ME4a LINE LINE
3144 chr1.24149750.24151752 L2c LINE LINE
3145 chr1.24149750.24151752 AluSx1 SINE SINE
3146 chr1.24149750.24151752 MER34B LTR LTR
3147 chr1.24149750.24151752 LTR10D LTR LTR
3148 chr1.24149750.24151752 MER34B LTR LTR
3149 chr1.24168177.24168505 MIRb SINE SINE
3150 chr1.24186833.24188034 (CCCGCCT)n Other Simple_repeat
3151 chr1.24186833.24188034 (G)n Other Simple_repeat
3152 chr1.24191901.24192444 L2c LINE LINE
3153 chr1.24191901.24192444 MIR SINE SINE
3154 chr1.24191901.24192444 AluSq SINE SINE
3155 chr1.24199345.24199698 MIRc SINE SINE
3156 chr1.24201930.24202696 <NA> <NA> <NA>
3157 chr1.24203189.24203677 (CCTC)n Other Simple_repeat
3158 chr1.24236132.24237150 MIR SINE SINE
3159 chr1.24236132.24237150 L2c LINE LINE
3160 chr1.24266295.24267017 (GGGA)n Other Simple_repeat
3161 chr1.24266295.24267017 MIRb SINE SINE
3162 chr1.24276777.24277186 L4_C_Mam LINE LINE
3163 chr1.24276777.24277186 MIR SINE SINE
3164 chr1.24309818.24310178 MIRb SINE SINE
3165 chr1.24315455.24315649 MER91B DNA DNA
3166 chr1.24319234.24320015 <NA> <NA> <NA>
3167 chr1.24321938.24322697 <NA> <NA> <NA>
3168 chr1.24330034.24330441 MER5A DNA DNA
3169 chr1.24330034.24330441 L1MA6 LINE LINE
3170 chr1.24330034.24330441 MER5A DNA DNA
3171 chr1.24330034.24330441 MIR SINE SINE
3172 chr1.24336804.24337132 MER91C DNA DNA
3173 chr1.24336804.24337132 MER91C DNA DNA
3174 chr1.24344116.24344915 MIRc SINE SINE
3175 chr1.24344116.24344915 AluJb SINE SINE
3176 chr1.24351952.24352663 (GCAGGTGTGA)n Other Simple_repeat
3177 chr1.24351952.24352663 MIRb SINE SINE
3178 chr1.24363123.24363499 MIRb SINE SINE
3179 chr1.24365077.24365572 AmnSINE1 SINE SINE
3180 chr1.24369152.24369561 MIRb SINE SINE
3181 chr1.24369152.24369561 MIRb SINE SINE
3182 chr1.24369152.24369561 L2b LINE LINE
3183 chr1.24383989.24384707 MIRb SINE SINE
3184 chr1.24391336.24391561 <NA> <NA> <NA>
3185 chr1.24391935.24392774 LTR52 LTR LTR
3186 chr1.24394004.24394238 L1ME3A LINE LINE
3187 chr1.24409571.24409900 MER44C DNA DNA
3188 chr1.24413408.24413841 <NA> <NA> <NA>
3189 chr1.24415315.24416304 <NA> <NA> <NA>
3190 chr1.24416947.24417350 <NA> <NA> <NA>
3191 chr1.24417750.24417910 L2a LINE LINE
3192 chr1.24419236.24419546 <NA> <NA> <NA>
3193 chr1.24425582.24425859 MIRb SINE SINE
3194 chr1.24425582.24425859 FRAM SINE SINE
3195 chr1.24425582.24425859 L2c LINE LINE
3196 chr1.24427285.24428511 MIRb SINE SINE
3197 chr1.24427285.24428511 MER39B LTR LTR
3198 chr1.24427285.24428511 AluJb SINE SINE
3199 chr1.24427285.24428511 (AG)n Other Simple_repeat
3200 chr1.24427285.24428511 MER39B LTR LTR
3201 chr1.24443367.24443636 MER117 DNA DNA
3202 chr1.24464512.24464984 MER102c DNA DNA
3203 chr1.24464512.24464984 Tigger15a DNA DNA
3204 chr1.24468601.24469428 <NA> <NA> <NA>
3205 chr1.24502093.24503478 GA-rich Other Low_complexity
3206 chr1.24502093.24503478 (CCCCCG)n Other Simple_repeat
3207 chr1.24502093.24503478 (GCGGG)n Other Simple_repeat
3208 chr1.24502093.24503478 (A)n Other Simple_repeat
3209 chr1.24511704.24511920 Tigger1 DNA DNA
3210 chr1.24515652.24516071 AluSg SINE SINE
3211 chr1.24541091.24541265 <NA> <NA> <NA>
3212 chr1.24555598.24556367 L2a LINE LINE
3213 chr1.24567924.24568401 <NA> <NA> <NA>
3214 chr1.24584044.24584633 <NA> <NA> <NA>
3215 chr1.24587038.24587566 MIRb SINE SINE
3216 chr1.24587038.24587566 L3b LINE LINE
3217 chr1.24587038.24587566 MamTip2 DNA DNA
3218 chr1.24587038.24587566 AluJb SINE SINE
3219 chr1.24591664.24592355 L2a LINE LINE
3220 chr1.24600731.24601712 FLAM_A SINE SINE
3221 chr1.24635138.24635551 <NA> <NA> <NA>
3222 chr1.24642280.24644265 AluY SINE SINE
3223 chr1.24642280.24644265 (GAGGCC)n Other Simple_repeat
3224 chr1.24664417.24664886 <NA> <NA> <NA>
3225 chr1.24673393.24673590 L2b LINE LINE
3226 chr1.24673393.24673590 (G)n Other Simple_repeat
3227 chr1.24683451.24684298 AluSg SINE SINE
3228 chr1.24683451.24684298 LTR23 LTR LTR
3229 chr1.24683451.24684298 MER112 DNA DNA
3230 chr1.24688389.24689114 MIRb SINE SINE
3231 chr1.24688389.24689114 MER104 DNA DNA
3232 chr1.24688389.24689114 L3 LINE LINE
3233 chr1.24694070.24694886 MIR3 SINE SINE
3234 chr1.24694070.24694886 MIR SINE SINE
3235 chr1.24694070.24694886 AluJb SINE SINE
3236 chr1.24695546.24696016 <NA> <NA> <NA>
3237 chr1.24704815.24705976 AluJb SINE SINE
3238 chr1.24704815.24705976 MIRb SINE SINE
3239 chr1.24704815.24705976 MIR3 SINE SINE
3240 chr1.24707862.24708082 G-rich Other Low_complexity
3241 chr1.24707862.24708082 AluSx3 SINE SINE
3242 chr1.24713025.24713818 MamTip2 DNA DNA
3243 chr1.24713025.24713818 MIR3 SINE SINE
3244 chr1.24718861.24719332 AluSz SINE SINE
3245 chr1.24718861.24719332 AluJr SINE SINE
3246 chr1.24720185.24720434 <NA> <NA> <NA>
3247 chr1.24724670.24725320 MLT1L LTR LTR
3248 chr1.24724670.24725320 L2b LINE LINE
3249 chr1.24724670.24725320 MIR SINE SINE
3250 chr1.24727469.24727748 AluSq2 SINE SINE
3251 chr1.24730451.24731084 <NA> <NA> <NA>
3252 chr1.24735509.24736370 L2a LINE LINE
3253 chr1.24735509.24736370 (AG)n Other Simple_repeat
3254 chr1.24735509.24736370 (GT)n Other Simple_repeat
3255 chr1.24742331.24742590 L2a LINE LINE
3256 chr1.24744881.24745921 (CAG)n Other Simple_repeat
3257 chr1.24764686.24765269 (TTG)n Other Simple_repeat
3258 chr1.24764686.24765269 L2a LINE LINE
3259 chr1.24764686.24765269 MIR SINE SINE
3260 chr1.24769967.24770536 AluJb SINE SINE
3261 chr1.24793743.24794488 L1PREC2 LINE LINE
3262 chr1.24804091.24804517 (TGTG)n Other Simple_repeat
3263 chr1.24805627.24805799 <NA> <NA> <NA>
3264 chr1.24830630.24830960 L1ME3G LINE LINE
3265 chr1.24835059.24835469 AluSz6 SINE SINE
3266 chr1.24847825.24848891 AluJr SINE SINE
3267 chr1.24898076.24898558 L3b LINE LINE
3268 chr1.24906559.24906883 L2a LINE LINE
3269 chr1.24906559.24906883 MIRc SINE SINE
3270 chr1.24909536.24909889 MIR3 SINE SINE
3271 chr1.24929495.24929964 (GCC)n Other Simple_repeat
3272 chr1.24932342.24932617 <NA> <NA> <NA>
3273 chr1.24972238.24972615 MIRb SINE SINE
3274 chr1.24972238.24972615 MIRb SINE SINE
3275 chr1.25008122.25008352 MER117 DNA DNA
3276 chr1.25008122.25008352 MIRc SINE SINE
3277 chr1.25022334.25023264 <NA> <NA> <NA>
3278 chr1.25032078.25032667 MIR3 SINE SINE
3279 chr1.25032078.25032667 MIRb SINE SINE
3280 chr1.25032078.25032667 Tigger13a DNA DNA
3281 chr1.25037197.25037953 L2b LINE LINE
3282 chr1.25037197.25037953 MIRc SINE SINE
3283 chr1.25037197.25037953 (CCACC)n Other Simple_repeat
3284 chr1.25042393.25042879 MER52A LTR LTR
3285 chr1.25066360.25066813 MIRb SINE SINE
3286 chr1.25090972.25091540 MIR3 SINE SINE
3287 chr1.25090972.25091540 MIR3 SINE SINE
3288 chr1.25096654.25097162 MER20 DNA DNA
3289 chr1.25096654.25097162 L1MEf LINE LINE
3290 chr1.25101489.25102010 MIR3 SINE SINE
3291 chr1.25103317.25103600 <NA> <NA> <NA>
3292 chr1.25122829.25123136 ERV3-16A3_I-int LTR LTR
3293 chr1.25122829.25123136 ORSL DNA DNA
3294 chr1.25123639.25123855 ORSL DNA DNA
3295 chr1.25123639.25123855 ERV3-16A3_I-int LTR LTR
3296 chr1.25145875.25146483 <NA> <NA> <NA>
3297 chr1.25182588.25183163 <NA> <NA> <NA>
3298 chr1.25199949.25200436 G-rich Other Low_complexity
3299 chr1.25223532.25223850 FLAM_C SINE SINE
3300 chr1.25231916.25233445 MER5B DNA DNA
3301 chr1.25231916.25233445 LTR8B LTR LTR
3302 chr1.25239484.25240424 FRAM SINE SINE
3303 chr1.25246426.25248049 G-rich Other Low_complexity
3304 chr1.25254016.25254351 <NA> <NA> <NA>
3305 chr1.25255716.25256189 MER1A DNA DNA
3306 chr1.25255716.25256189 AluJr SINE SINE
3307 chr1.25267560.25268386 MIRb SINE SINE
3308 chr1.25267560.25268386 L2a LINE LINE
3309 chr1.25267560.25268386 AluSx SINE SINE
3310 chr1.25302450.25302682 <NA> <NA> <NA>
3311 chr1.25304886.25305449 (TCAT)n Other Simple_repeat
3312 chr1.25304886.25305449 L2c LINE LINE
3313 chr1.25304886.25305449 (TATT)n Other Simple_repeat
3314 chr1.25304886.25305449 AluSx1 SINE SINE
3315 chr1.25319978.25320971 AluSp SINE SINE
3316 chr1.25319978.25320971 Tigger15a DNA DNA
3317 chr1.25319978.25320971 AluJb SINE SINE
3318 chr1.25338071.25339278 <NA> <NA> <NA>
3319 chr1.25343717.25344232 L2a LINE LINE
3320 chr1.25343717.25344232 AluJb SINE SINE
3321 chr1.25352203.25352540 AluY SINE SINE
3322 chr1.25361262.25361637 <NA> <NA> <NA>
3323 chr1.25369166.25369899 MIR1_Amn SINE SINE
3324 chr1.25369166.25369899 G-rich Other Low_complexity
3325 chr1.25369166.25369899 AluSz6 SINE SINE
3326 chr1.25371558.25372159 AluJb SINE SINE
3327 chr1.25389734.25390181 <NA> <NA> <NA>
3328 chr1.25403154.25403404 MIRb SINE SINE
3329 chr1.25430018.25431414 (CCGGC)n Other Simple_repeat
3330 chr1.25430018.25431414 (GCG)n Other Simple_repeat
3331 chr1.25430018.25431414 G-rich Other Low_complexity
3332 chr1.25442138.25442563 MER5A1 DNA DNA
3333 chr1.25468115.25468501 <NA> <NA> <NA>
3334 chr1.25471119.25471322 AluSz6 SINE SINE
3335 chr1.25474300.25474898 MER102b DNA DNA
3336 chr1.25474300.25474898 MamTip2 DNA DNA
3337 chr1.25482215.25482864 L2b LINE LINE
3338 chr1.25482215.25482864 MIR SINE SINE
3339 chr1.25492078.25492705 L2c LINE LINE
3340 chr1.25492078.25492705 L2a LINE LINE
3341 chr1.25501217.25502088 MIRb SINE SINE
3342 chr1.25501217.25502088 MER5A1 DNA DNA
3343 chr1.25503710.25504246 MER5A DNA DNA
3344 chr1.25503710.25504246 AluJb SINE SINE
3345 chr1.25507012.25507310 L1PA2 LINE LINE
3346 chr1.25520612.25521082 MIR SINE SINE
3347 chr1.25523488.25524057 MIRb SINE SINE
3348 chr1.25543291.25544324 MIR1_Amn SINE SINE
3349 chr1.25543291.25544324 (GGC)n Other Simple_repeat
3350 chr1.25543291.25544324 (GCCGG)n Other Simple_repeat
3351 chr1.25549364.25550423 MIR SINE SINE
3352 chr1.25549364.25550423 L2c LINE LINE
3353 chr1.25556693.25557262 MIR SINE SINE
3354 chr1.25566685.25567469 <NA> <NA> <NA>
3355 chr1.25568991.25569331 <NA> <NA> <NA>
3356 chr1.25572720.25573032 MIRb SINE SINE
3357 chr1.25574625.25575106 <NA> <NA> <NA>
3358 chr1.25586191.25586945 (GT)n Other Simple_repeat
3359 chr1.25587881.25588523 LTR5_Hs LTR LTR
3360 chr1.25590130.25590426 MLT2B2 LTR LTR
3361 chr1.25590130.25590426 L2b LINE LINE
3362 chr1.25608349.25608849 AluSx SINE SINE
3363 chr1.25608349.25608849 MER33 DNA DNA
3364 chr1.25608349.25608849 MLT1I LTR LTR
3365 chr1.25615892.25617366 (CGG)n Other Simple_repeat
3366 chr1.25615892.25617366 MER52D LTR LTR
3367 chr1.25617612.25618533 <NA> <NA> <NA>
3368 chr1.25619177.25619531 <NA> <NA> <NA>
3369 chr1.25645485.25645905 <NA> <NA> <NA>
3370 chr1.25651112.25651622 <NA> <NA> <NA>
3371 chr1.25658879.25659459 <NA> <NA> <NA>
3372 chr1.25667846.25668309 L2a LINE LINE
3373 chr1.25672805.25673361 L2b LINE LINE
3374 chr1.25672805.25673361 MIR SINE SINE
3375 chr1.25672805.25673361 MIR SINE SINE
3376 chr1.25683709.25684128 L2b LINE LINE
3377 chr1.25688447.25689100 MIRc SINE SINE
3378 chr1.25688447.25689100 L2b LINE LINE
3379 chr1.25695128.25695581 <NA> <NA> <NA>
3380 chr1.25695834.25696355 MIR3 SINE SINE
3381 chr1.25695834.25696355 (TTTC)n Other Simple_repeat
3382 chr1.25698435.25698676 MIRc SINE SINE
3383 chr1.25698435.25698676 L2c LINE LINE
3384 chr1.25698435.25698676 AluSg SINE SINE
3385 chr1.25699487.25700894 (TTG)n Other Simple_repeat
3386 chr1.25708230.25708624 MER41B LTR LTR
3387 chr1.25708230.25708624 AluSq SINE SINE
3388 chr1.25727267.25728643 MIRc SINE SINE
3389 chr1.25727267.25728643 MIRc SINE SINE
3390 chr1.25727267.25728643 MLT1J1 LTR LTR
3391 chr1.25736176.25736781 MIRb SINE SINE
3392 chr1.25736176.25736781 AluJb SINE SINE
3393 chr1.25760566.25761044 MIRb SINE SINE
3394 chr1.25765219.25765419 <NA> <NA> <NA>
3395 chr1.25766279.25766892 MIRc SINE SINE
3396 chr1.25768781.25769364 (CA)n Other Simple_repeat
3397 chr1.25771000.25772084 MIR3 SINE SINE
3398 chr1.25772912.25773197 L2a LINE LINE
3399 chr1.25775080.25775382 <NA> <NA> <NA>
3400 chr1.25782844.25783067 <NA> <NA> <NA>
3401 chr1.25784608.25785223 MIR3 SINE SINE
3402 chr1.25784608.25785223 L2a LINE LINE
3403 chr1.25786876.25787351 (TCTCC)n Other Simple_repeat
3404 chr1.25794322.25794693 L2b LINE LINE
3405 chr1.25794322.25794693 AluSc SINE SINE
3406 chr1.25796749.25797230 (TG)n Other Simple_repeat
3407 chr1.25797902.25798319 L2c LINE LINE
3408 chr1.25799758.25801287 (CCCCG)n Other Simple_repeat
3409 chr1.25799758.25801287 L3 LINE LINE
3410 chr1.25799758.25801287 MIRc SINE SINE
3411 chr1.25809842.25811291 L2b LINE LINE
3412 chr1.25809842.25811291 MIRc SINE SINE
3413 chr1.25809842.25811291 MIRc SINE SINE
3414 chr1.25819087.25821067 MER45A DNA DNA
3415 chr1.25819087.25821067 (GT)n Other Simple_repeat
3416 chr1.25819087.25821067 MIR1_Amn SINE SINE
3417 chr1.25829086.25829583 <NA> <NA> <NA>
3418 chr1.25842536.25843050 Tigger1 DNA DNA
3419 chr1.25842536.25843050 AluJr SINE SINE
3420 chr1.25845197.25845560 L2 LINE LINE
3421 chr1.25848688.25848861 MER77 LTR LTR
3422 chr1.25858740.25859836 MIRb SINE SINE
3423 chr1.25858740.25859836 (CCGGCC)n Other Simple_repeat
3424 chr1.25858740.25859836 (CCGCC)n Other Simple_repeat
3425 chr1.25874859.25876424 <NA> <NA> <NA>
3426 chr1.25879786.25879914 MIRc SINE SINE
3427 chr1.25890435.25890835 LTR22A LTR LTR
3428 chr1.25892268.25892921 AluSx1 SINE SINE
3429 chr1.25892268.25892921 (T)n Other Simple_repeat
3430 chr1.25892268.25892921 MIR3 SINE SINE
3431 chr1.25895237.25895833 AluY SINE SINE
3432 chr1.25895237.25895833 MER102b DNA DNA
3433 chr1.25905085.25907311 (AGGG)n Other Simple_repeat
3434 chr1.25909017.25909417 <NA> <NA> <NA>
3435 chr1.25912220.25912740 L1ME4b LINE LINE
3436 chr1.25914151.25914611 MER115 DNA DNA
3437 chr1.25914151.25914611 MER115 DNA DNA
3438 chr1.25914151.25914611 MIR SINE SINE
3439 chr1.25918078.25918271 <NA> <NA> <NA>
3440 chr1.25922389.25923509 MIR3 SINE SINE
3441 chr1.25922389.25923509 MIRb SINE SINE
3442 chr1.25958430.25958842 Tigger15a DNA DNA
3443 chr1.25958430.25958842 MLT1I LTR LTR
3444 chr1.25990830.25991327 MIRc SINE SINE
3445 chr1.25990830.25991327 AluSc5 SINE SINE
3446 chr1.25992176.25992704 FLAM_A SINE SINE
3447 chr1.25992176.25992704 (TCA)n Other Simple_repeat
3448 chr1.25992176.25992704 MIRb SINE SINE
3449 chr1.25997015.25997473 MIRc SINE SINE
3450 chr1.25997666.25998667 <NA> <NA> <NA>
3451 chr1.26010100.26010378 LTR35A LTR LTR
3452 chr1.26010727.26011198 LTR35A LTR LTR
3453 chr1.26010727.26011198 MER74A LTR LTR
3454 chr1.26010727.26011198 L2a LINE LINE
3455 chr1.26016546.26017389 MIR3 SINE SINE
3456 chr1.26016546.26017389 MIR SINE SINE
3457 chr1.26017483.26018071 FLAM_A SINE SINE
3458 chr1.26020402.26021143 L2b LINE LINE
3459 chr1.26020402.26021143 L2b LINE LINE
3460 chr1.26021622.26022407 MIRb SINE SINE
3461 chr1.26021622.26022407 MIR3 SINE SINE
3462 chr1.26035062.26036915 L2c LINE LINE
3463 chr1.26043925.26044109 <NA> <NA> <NA>
3464 chr1.26045730.26046363 (CTCCGG)n Other Simple_repeat
3465 chr1.26049558.26050024 LTR16D1 LTR LTR
3466 chr1.26054065.26054456 <NA> <NA> <NA>
3467 chr1.26060747.26061201 <NA> <NA> <NA>
3468 chr1.26065835.26068173 MIR SINE SINE
3469 chr1.26065835.26068173 MIRc SINE SINE
3470 chr1.26065835.26068173 G-rich Other Low_complexity
3471 chr1.26065835.26068173 L2c LINE LINE
3472 chr1.26065835.26068173 AluSx3 SINE SINE
3473 chr1.26081659.26082032 <NA> <NA> <NA>
3474 chr1.26083207.26083690 <NA> <NA> <NA>
3475 chr1.26093564.26095115 LTR10C LTR LTR
3476 chr1.26093564.26095115 MIRc SINE SINE
3477 chr1.26093564.26095115 MIRb SINE SINE
3478 chr1.26097863.26098043 MamRep605 Other LTR?
3479 chr1.26101816.26102520 MamTip3 DNA DNA
3480 chr1.26101816.26102520 L1MA8 LINE LINE
3481 chr1.26101816.26102520 L2b LINE LINE
3482 chr1.26103836.26104264 MamRep1879 DNA DNA
3483 chr1.26103836.26104264 L1MC1 LINE LINE
3484 chr1.26103836.26104264 AluSx1 SINE SINE
3485 chr1.26104456.26105262 AluSx1 SINE SINE
3486 chr1.26104456.26105262 (AC)n Other Simple_repeat
3487 chr1.26104456.26105262 MIR SINE SINE
3488 chr1.26104456.26105262 MIRc SINE SINE
3489 chr1.26104456.26105262 L1MC5a LINE LINE
3490 chr1.26110702.26112588 (GCC)n Other Simple_repeat
3491 chr1.26110702.26112588 (CGG)n Other Simple_repeat
3492 chr1.26110702.26112588 (GCCCCCA)n Other Simple_repeat
3493 chr1.26123291.26123675 <NA> <NA> <NA>
3494 chr1.26126394.26126735 <NA> <NA> <NA>
3495 chr1.26127320.26127922 MIRb SINE SINE
3496 chr1.26144911.26145832 MIRc SINE SINE
3497 chr1.26144911.26145832 LTR16A LTR LTR
3498 chr1.26156545.26156981 <NA> <NA> <NA>
3499 chr1.26158942.26159668 <NA> <NA> <NA>
3500 chr1.26161079.26162239 (GGC)n Other Simple_repeat
3501 chr1.26161079.26162239 MIR3 SINE SINE
3502 chr1.26164260.26164711 (CGC)n Other Simple_repeat
3503 chr1.26168925.26170537 (CGACCC)n Other Simple_repeat
3504 chr1.26177023.26177564 Charlie4a DNA DNA
3505 chr1.26177023.26177564 MIR SINE SINE
3506 chr1.26181702.26182038 MIRb SINE SINE
3507 chr1.26190307.26190760 <NA> <NA> <NA>
3508 chr1.26201095.26201574 MIR3 SINE SINE
3509 chr1.26210321.26210907 <NA> <NA> <NA>
3510 chr1.26225096.26225901 <NA> <NA> <NA>
3511 chr1.26233720.26234973 L2b LINE LINE
3512 chr1.26233720.26234973 MER20 DNA DNA
3513 chr1.26254208.26255012 <NA> <NA> <NA>
3514 chr1.26275659.26276585 <NA> <NA> <NA>
3515 chr1.26279668.26280644 (CTGACC)n Other Simple_repeat
3516 chr1.26279668.26280644 (CCTCC)n Other Simple_repeat
3517 chr1.26279668.26280644 (CTGACC)n Other Simple_repeat
3518 chr1.26284665.26285338 <NA> <NA> <NA>
3519 chr1.26306194.26306885 (G)n Other Simple_repeat
3520 chr1.26321181.26322159 L2c LINE LINE
3521 chr1.26331420.26331932 L1MC5a LINE LINE
3522 chr1.26336116.26337138 (CCGCCC)n Other Simple_repeat
3523 chr1.26345658.26346185 <NA> <NA> <NA>
3524 chr1.26351414.26352206 (TCAT)n Other Simple_repeat
3525 chr1.26351414.26352206 L3 LINE LINE
3526 chr1.26351414.26352206 (CA)n Other Simple_repeat
3527 chr1.26363793.26364235 7SLRNA Other srpRNA
3528 chr1.26363793.26364235 MER5A DNA DNA
3529 chr1.26363793.26364235 MIR3 SINE SINE
3530 chr1.26372062.26372316 <NA> <NA> <NA>
3531 chr1.26391546.26391898 L2a LINE LINE
3532 chr1.26404601.26405017 AluJo SINE SINE
3533 chr1.26404601.26405017 L2a LINE LINE
3534 chr1.26405054.26405699 AluY SINE SINE
3535 chr1.26405054.26405699 AluSq2 SINE SINE
3536 chr1.26408620.26408857 <NA> <NA> <NA>
3537 chr1.26410906.26411509 <NA> <NA> <NA>
3538 chr1.26417079.26417453 <NA> <NA> <NA>
3539 chr1.26418810.26419471 MIRc SINE SINE
3540 chr1.26431906.26432812 <NA> <NA> <NA>
3541 chr1.26450956.26451430 (TG)n Other Simple_repeat
3542 chr1.26471566.26473557 (GCC)n Other Simple_repeat
3543 chr1.26500093.26501688 <NA> <NA> <NA>
3544 chr1.26510525.26511092 Tigger1 DNA DNA
3545 chr1.26510525.26511092 AluJo SINE SINE
3546 chr1.26510525.26511092 AluSz SINE SINE
3547 chr1.26521652.26521933 AluSz SINE SINE
3548 chr1.26521652.26521933 L2a LINE LINE
3549 chr1.26529662.26530627 (GCGGCG)n Other Simple_repeat
3550 chr1.26531019.26531950 <NA> <NA> <NA>
3551 chr1.26541970.26542536 (TGTG)n Other Simple_repeat
3552 chr1.26541970.26542536 (TGTGCA)n Other Simple_repeat
3553 chr1.26541970.26542536 (TGTG)n Other Simple_repeat
3554 chr1.26620129.26621660 MIR1_Amn SINE SINE
3555 chr1.26633752.26634158 AluSx SINE SINE
3556 chr1.26633752.26634158 MER41-int LTR LTR
3557 chr1.26633752.26634158 AluSp SINE SINE
3558 chr1.26635592.26636184 MER41-int LTR LTR
3559 chr1.26635592.26636184 MER41-int LTR LTR
3560 chr1.26635592.26636184 MER41B LTR LTR
3561 chr1.26635592.26636184 FLAM_C SINE SINE
3562 chr1.26666950.26667189 L1M5 LINE LINE
3563 chr1.26668192.26668594 L1MA3 LINE LINE
3564 chr1.26668192.26668594 AluSq2 SINE SINE
3565 chr1.26668192.26668594 L1MA3 LINE LINE
3566 chr1.26677388.26677973 <NA> <NA> <NA>
3567 chr1.26685270.26685610 (A)n Other Simple_repeat
3568 chr1.26685270.26685610 AluSx SINE SINE
3569 chr1.26687826.26688150 AluJb SINE SINE
3570 chr1.26692248.26693409 <NA> <NA> <NA>
3571 chr1.26695324.26696234 (CCGC)n Other Simple_repeat
3572 chr1.26695324.26696234 (CCCT)n Other Simple_repeat
3573 chr1.26695324.26696234 (GCC)n Other Simple_repeat
3574 chr1.26696693.26697457 (CGG)n Other Simple_repeat
3575 chr1.26696693.26697457 (CCT)n Other Simple_repeat
3576 chr1.26696693.26697457 (CCCCAC)n Other Simple_repeat
3577 chr1.26696693.26697457 (GGC)n Other Simple_repeat
3578 chr1.26697947.26698518 <NA> <NA> <NA>
3579 chr1.26705774.26706105 <NA> <NA> <NA>
3580 chr1.26723237.26723975 <NA> <NA> <NA>
3581 chr1.26726847.26727065 <NA> <NA> <NA>
3582 chr1.26731026.26731691 <NA> <NA> <NA>
3583 chr1.26744072.26744811 <NA> <NA> <NA>
3584 chr1.26753220.26753647 <NA> <NA> <NA>
3585 chr1.26768768.26769178 A-rich Other Low_complexity
3586 chr1.26771440.26772510 <NA> <NA> <NA>
3587 chr1.26772817.26773131 <NA> <NA> <NA>
3588 chr1.26782550.26782875 L2a LINE LINE
3589 chr1.26784030.26784304 <NA> <NA> <NA>
3590 chr1.26786688.26787335 <NA> <NA> <NA>
3591 chr1.26787405.26788672 L2b LINE LINE
3592 chr1.26787405.26788672 MamRTE1 LINE LINE
3593 chr1.26787405.26788672 MIRb SINE SINE
3594 chr1.26788946.26789461 <NA> <NA> <NA>
3595 chr1.26799570.26800356 <NA> <NA> <NA>
3596 chr1.26805716.26806207 MLT1J2-int LTR LTR
3597 chr1.26805716.26806207 AluJb SINE SINE
3598 chr1.26805716.26806207 AluJb SINE SINE
3599 chr1.26809998.26810375 AluSx4 SINE SINE
3600 chr1.26809998.26810375 LTR50 LTR LTR
3601 chr1.26809998.26810375 AluSq2 SINE SINE
3602 chr1.26825477.26825734 MLT1E1A LTR LTR
3603 chr1.26825477.26825734 MLT1E1A LTR LTR
3604 chr1.26826222.26827284 L2a LINE LINE
3605 chr1.26826222.26827284 (GGC)n Other Simple_repeat
3606 chr1.26826222.26827284 (CGC)n Other Simple_repeat
3607 chr1.26826222.26827284 (GCAGCG)n Other Simple_repeat
3608 chr1.26833608.26834161 <NA> <NA> <NA>
3609 chr1.26838748.26839414 L2b LINE LINE
3610 chr1.26853160.26853675 <NA> <NA> <NA>
3611 chr1.26864458.26865580 MIR3 SINE SINE
3612 chr1.26872445.26872657 <NA> <NA> <NA>
3613 chr1.26877906.26878558 AluSg7 SINE SINE
3614 chr1.26877906.26878558 MER113 DNA DNA
3615 chr1.26877906.26878558 AluSx SINE SINE
3616 chr1.26887300.26887534 <NA> <NA> <NA>
3617 chr1.26889595.26890600 MIR SINE SINE
3618 chr1.26899462.26900603 <NA> <NA> <NA>
3619 chr1.26907483.26908020 L2c LINE LINE
3620 chr1.26907483.26908020 AluSq SINE SINE
3621 chr1.26913793.26914574 <NA> <NA> <NA>
3622 chr1.26921306.26922442 MER45A DNA DNA
3623 chr1.26921306.26922442 MIRc SINE SINE
3624 chr1.26938078.26938369 <NA> <NA> <NA>
3625 chr1.26940438.26940776 AluSp SINE SINE
3626 chr1.26940438.26940776 AluSx3 SINE SINE
3627 chr1.26959751.26960270 <NA> <NA> <NA>
3628 chr1.26960429.26960742 L2b LINE LINE
3629 chr1.26961884.26962104 L1ME3F LINE LINE
3630 chr1.26966878.26967316 L2 LINE LINE
3631 chr1.26966878.26967316 MIRb SINE SINE
3632 chr1.26966878.26967316 AluSx SINE SINE
3633 chr1.26972180.26972651 <NA> <NA> <NA>
3634 chr1.26990635.26991009 L2a LINE LINE
3635 chr1.26990635.26991009 MIRb SINE SINE
3636 chr1.26990635.26991009 MIRb SINE SINE
3637 chr1.26993079.26994301 MIR3 SINE SINE
3638 chr1.26993079.26994301 (G)n Other Simple_repeat
3639 chr1.26993079.26994301 (CCCCGA)n Other Simple_repeat
3640 chr1.26994429.26995030 <NA> <NA> <NA>
3641 chr1.26997611.26998048 <NA> <NA> <NA>
3642 chr1.26999267.27000001 AluSq SINE SINE
3643 chr1.27004367.27005115 <NA> <NA> <NA>
3644 chr1.27009999.27010165 MIR3 SINE SINE
3645 chr1.27010748.27011361 L2b LINE LINE
3646 chr1.27012579.27013374 (CCGCT)n Other Simple_repeat
3647 chr1.27012579.27013374 MIR3 SINE SINE
3648 chr1.27012579.27013374 AluY SINE SINE
3649 chr1.27021364.27021999 L2a LINE LINE
3650 chr1.27021364.27021999 MER41E LTR LTR
3651 chr1.27021364.27021999 MER61B LTR LTR
3652 chr1.27027133.27027500 L2a LINE LINE
3653 chr1.27031547.27031968 (CCCT)n Other Simple_repeat
3654 chr1.27044464.27044977 AluSx1 SINE SINE
3655 chr1.27044464.27044977 MIR SINE SINE
3656 chr1.27045870.27046163 <NA> <NA> <NA>
3657 chr1.27061908.27062306 AluSz SINE SINE
3658 chr1.27070747.27071478 ERVL-E-int LTR LTR
3659 chr1.27070747.27071478 LTR105_Mam LTR LTR
3660 chr1.27074133.27074767 AluJo SINE SINE
3661 chr1.27074133.27074767 ERVL-E-int LTR LTR
3662 chr1.27086418.27087167 MLT1E1A LTR LTR
3663 chr1.27086418.27087167 (CA)n Other Simple_repeat
3664 chr1.27086418.27087167 MIRc SINE SINE
3665 chr1.27086418.27087167 AluSz SINE SINE
3666 chr1.27090858.27091353 ERVL-E-int LTR LTR
3667 chr1.27097478.27097798 Tigger4b DNA DNA
3668 chr1.27099186.27100136 GA-rich Other Low_complexity
3669 chr1.27099186.27100136 (GGCAGG)n Other Simple_repeat
3670 chr1.27102465.27103083 (TGCC)n Other Simple_repeat
3671 chr1.27106626.27107089 MIRc SINE SINE
3672 chr1.27111877.27112549 MIRc SINE SINE
3673 chr1.27111877.27112549 MIRb SINE SINE
3674 chr1.27117677.27118259 MIRb SINE SINE
3675 chr1.27117677.27118259 L2b LINE LINE
3676 chr1.27118689.27119424 MIR3 SINE SINE
3677 chr1.27118689.27119424 (AC)n Other Simple_repeat
3678 chr1.27132384.27132975 MIR3 SINE SINE
3679 chr1.27132384.27132975 MIRb SINE SINE
3680 chr1.27139010.27139539 MIRb SINE SINE
3681 chr1.27145202.27146291 L2c LINE LINE
3682 chr1.27152609.27153097 <NA> <NA> <NA>
3683 chr1.27153490.27155630 (GGCTGTG)n Other Simple_repeat
3684 chr1.27153490.27155630 (GCTCCA)n Other Simple_repeat
3685 chr1.27153490.27155630 (A)n Other Simple_repeat
3686 chr1.27153490.27155630 MIR SINE SINE
3687 chr1.27153490.27155630 MIR SINE SINE
3688 chr1.27165503.27165761 FLAM_C SINE SINE
3689 chr1.27192620.27193048 AluSg SINE SINE
3690 chr1.27192620.27193048 AluJo SINE SINE
3691 chr1.27197848.27198386 MIRc SINE SINE
3692 chr1.27197848.27198386 MIR3 SINE SINE
3693 chr1.27218898.27219009 AluJb SINE SINE
3694 chr1.27233872.27235046 (CGCAGG)n Other Simple_repeat
3695 chr1.27233872.27235046 (GT)n Other Simple_repeat
3696 chr1.27235220.27235724 (TC)n Other Simple_repeat
3697 chr1.27235220.27235724 (TG)n Other Simple_repeat
3698 chr1.27284594.27285165 AluSx SINE SINE
3699 chr1.27292036.27292446 MIRb SINE SINE
3700 chr1.27296802.27297005 (CCCAGC)n Other Simple_repeat
3701 chr1.27299360.27300124 L2c LINE LINE
3702 chr1.27300625.27301301 <NA> <NA> <NA>
3703 chr1.27306792.27307234 <NA> <NA> <NA>
3704 chr1.27321914.27322826 L2b LINE LINE
3705 chr1.27321914.27322826 MIR3 SINE SINE
3706 chr1.27332653.27333287 L2c LINE LINE
3707 chr1.27341646.27343598 MIRb SINE SINE
3708 chr1.27341646.27343598 (TG)n Other Simple_repeat
3709 chr1.27347234.27347611 L2b LINE LINE
3710 chr1.27349345.27350106 <NA> <NA> <NA>
3711 chr1.27351064.27351823 L2c LINE LINE
3712 chr1.27357359.27357907 (CCTGCT)n Other Simple_repeat
3713 chr1.27360354.27360827 <NA> <NA> <NA>
3714 chr1.27365311.27367257 (ATGT)n Other Simple_repeat
3715 chr1.27372576.27372933 AluSq2 SINE SINE
3716 chr1.27380370.27380792 MIR3 SINE SINE
3717 chr1.27381395.27381622 MIRb SINE SINE
3718 chr1.27383101.27383432 G-rich Other Low_complexity
3719 chr1.27391549.27392050 <NA> <NA> <NA>
3720 chr1.27392178.27392971 (GCCGC)n Other Simple_repeat
3721 chr1.27395466.27395848 <NA> <NA> <NA>
3722 chr1.27402418.27402968 MamTip2 DNA DNA
3723 chr1.27402418.27402968 MIRb SINE SINE
3724 chr1.27404974.27405459 <NA> <NA> <NA>
3725 chr1.27416400.27416913 Tigger19a DNA DNA
3726 chr1.27418260.27418978 <NA> <NA> <NA>
3727 chr1.27427227.27427481 <NA> <NA> <NA>
3728 chr1.27428082.27429180 (T)n Other Simple_repeat
3729 chr1.27434192.27434641 L3 LINE LINE
3730 chr1.27434192.27434641 MIR3 SINE SINE
3731 chr1.27436092.27436989 AluJo SINE SINE
3732 chr1.27438506.27438961 <NA> <NA> <NA>
3733 chr1.27448881.27449479 L2c LINE LINE
3734 chr1.27448881.27449479 AluSz SINE SINE
3735 chr1.27451015.27451727 FLAM_C SINE SINE
3736 chr1.27451015.27451727 L2 LINE LINE
3737 chr1.27455309.27455669 L2c LINE LINE
3738 chr1.27489655.27490801 MIR3 SINE SINE
3739 chr1.27489655.27490801 MIRb SINE SINE
3740 chr1.27496659.27497136 (TC)n Other Simple_repeat
3741 chr1.27496659.27497136 L2a LINE LINE
3742 chr1.27504112.27505587 (CT)n Other Simple_repeat
3743 chr1.27504112.27505587 MIR SINE SINE
3744 chr1.27504112.27505587 MIRc SINE SINE
3745 chr1.27504112.27505587 MIRc SINE SINE
3746 chr1.27517859.27518689 AluSx3 SINE SINE
3747 chr1.27517859.27518689 L2c LINE LINE
3748 chr1.27517859.27518689 L2b LINE LINE
3749 chr1.27517859.27518689 G-rich Other Low_complexity
3750 chr1.27519309.27519939 MamTip2 DNA DNA
3751 chr1.27525419.27526217 L2b LINE LINE
3752 chr1.27527073.27527587 <NA> <NA> <NA>
3753 chr1.27527825.27529426 (GCCCTC)n Other Simple_repeat
3754 chr1.27527825.27529426 (CCTC)n Other Simple_repeat
3755 chr1.27536575.27537230 <NA> <NA> <NA>
3756 chr1.27538874.27539035 MIR3 SINE SINE
3757 chr1.27540368.27540915 (A)n Other Simple_repeat
3758 chr1.27540368.27540915 L2c LINE LINE
3759 chr1.27542211.27543423 MIRb SINE SINE
3760 chr1.27551166.27551826 <NA> <NA> <NA>
3761 chr1.27560421.27560925 (GT)n Other Simple_repeat
3762 chr1.27563402.27564239 MIR3 SINE SINE
3763 chr1.27568062.27568923 <NA> <NA> <NA>
3764 chr1.27569076.27569673 MIR SINE SINE
3765 chr1.27569076.27569673 MIRb SINE SINE
3766 chr1.27572915.27573256 MIR3 SINE SINE
3767 chr1.27574789.27576238 (CCG)n Other Simple_repeat
3768 chr1.27574789.27576238 G-rich Other Low_complexity
3769 chr1.27574789.27576238 MIR3 SINE SINE
3770 chr1.27589319.27589692 (TCTGTG)n Other Simple_repeat
3771 chr1.27589319.27589692 (TG)n Other Simple_repeat
3772 chr1.27589925.27590339 <NA> <NA> <NA>
3773 chr1.27599163.27599546 (CAGGGC)n Other Simple_repeat
3774 chr1.27599163.27599546 MIR3 SINE SINE
3775 chr1.27601871.27602613 (CCAGC)n Other Simple_repeat
3776 chr1.27601871.27602613 (TCCCGC)n Other Simple_repeat
3777 chr1.27603288.27604318 (CTCT)n Other Simple_repeat
3778 chr1.27603288.27604318 (TCCC)n Other Simple_repeat
3779 chr1.27603288.27604318 (CCTCGC)n Other Simple_repeat
3780 chr1.27603288.27604318 G-rich Other Low_complexity
3781 chr1.27606350.27607084 MIRc SINE SINE
3782 chr1.27612417.27612813 MIR3 SINE SINE
3783 chr1.27621465.27621830 MIRb SINE SINE
3784 chr1.27628698.27628989 <NA> <NA> <NA>
3785 chr1.27635516.27635802 AluJo SINE SINE
3786 chr1.27643821.27644290 L3 LINE LINE
3787 chr1.27643821.27644290 MIR3 SINE SINE
3788 chr1.27648511.27648901 MIRb SINE SINE
3789 chr1.27650599.27651193 LTR16E1 LTR LTR
3790 chr1.27650599.27651193 MIRb SINE SINE
3791 chr1.27650599.27651193 L2a LINE LINE
3792 chr1.27655264.27655523 L2a LINE LINE
3793 chr1.27656050.27656399 MIRb SINE SINE
3794 chr1.27659312.27659932 MIRc SINE SINE
3795 chr1.27659312.27659932 MIR3 SINE SINE
3796 chr1.27660061.27660364 <NA> <NA> <NA>
3797 chr1.27662980.27663613 <NA> <NA> <NA>
3798 chr1.27671994.27672992 (TCTGCAC)n Other Simple_repeat
3799 chr1.27671994.27672992 MIRb SINE SINE
3800 chr1.27671994.27672992 ERVL-E-int LTR LTR
3801 chr1.27688009.27688239 LTR32 LTR LTR
3802 chr1.27688009.27688239 MER4B-int LTR LTR
3803 chr1.27689540.27689994 MER21-int LTR LTR
3804 chr1.27713426.27713712 LTR19B LTR LTR
3805 chr1.27725441.27726663 (GCCC)n Other Simple_repeat
3806 chr1.27725441.27726663 G-rich Other Low_complexity
3807 chr1.27772803.27773946 (CAGCCC)n Other Simple_repeat
3808 chr1.27778155.27778380 <NA> <NA> <NA>
3809 chr1.27785832.27786286 L2a LINE LINE
3810 chr1.27789481.27789975 <NA> <NA> <NA>
3811 chr1.27793188.27793577 <NA> <NA> <NA>
3812 chr1.27817231.27817673 MER21-int LTR LTR
3813 chr1.27817231.27817673 MER21-int LTR LTR
3814 chr1.27830444.27831595 AluSz SINE SINE
3815 chr1.27830444.27831595 L2c LINE LINE
3816 chr1.27830444.27831595 L2b LINE LINE
3817 chr1.27851657.27852232 SVA_F Retroposon Retroposon
3818 chr1.27857964.27858701 MIRb SINE SINE
3819 chr1.27863209.27863528 <NA> <NA> <NA>
3820 chr1.27872394.27873559 G-rich Other Low_complexity
3821 chr1.27872394.27873559 MIRb SINE SINE
3822 chr1.27872394.27873559 L2b LINE LINE
3823 chr1.27872394.27873559 L2b LINE LINE
3824 chr1.27872394.27873559 (AGGTGG)n Other Simple_repeat
3825 chr1.27914136.27915160 L3 LINE LINE
3826 chr1.27933850.27934113 AluJr SINE SINE
3827 chr1.27933850.27934113 AluJb SINE SINE
3828 chr1.27934833.27935513 L2c LINE LINE
3829 chr1.27959463.27960450 <NA> <NA> <NA>
3830 chr1.27966653.27967142 <NA> <NA> <NA>
3831 chr1.27968606.27969051 L2a LINE LINE
3832 chr1.27971728.27972032 <NA> <NA> <NA>
3833 chr1.27991110.27991557 Charlie10b DNA DNA
3834 chr1.27991110.27991557 MIR3 SINE SINE
3835 chr1.27993813.27994641 L1ME4a LINE LINE
3836 chr1.27993813.27994641 MLT1F LTR LTR
3837 chr1.27993813.27994641 AluSx SINE SINE
3838 chr1.28028943.28029749 AluJr SINE SINE
3839 chr1.28028943.28029749 Tigger15a DNA DNA
3840 chr1.28028943.28029749 Tigger15a DNA DNA
3841 chr1.28028943.28029749 AluSq SINE SINE
3842 chr1.28031232.28031709 <NA> <NA> <NA>
3843 chr1.28065648.28066231 MER44C DNA DNA
3844 chr1.28065648.28066231 AluSg SINE SINE
3845 chr1.28065648.28066231 MER44C DNA DNA
3846 chr1.28075981.28076332 <NA> <NA> <NA>
3847 chr1.28078192.28079444 MIR SINE SINE
3848 chr1.28078192.28079444 AluSz6 SINE SINE
3849 chr1.28078192.28079444 MIR SINE SINE
3850 chr1.28078192.28079444 MIR SINE SINE
3851 chr1.28087855.28089083 AluSp SINE SINE
3852 chr1.28091299.28091461 L2a LINE LINE
3853 chr1.28098963.28099533 AluSx SINE SINE
3854 chr1.28098963.28099533 Charlie1b DNA DNA
3855 chr1.28104929.28105683 MIRb SINE SINE
3856 chr1.28104929.28105683 MIR SINE SINE
3857 chr1.28129106.28129585 <NA> <NA> <NA>
3858 chr1.28153154.28153472 AluJo SINE SINE
3859 chr1.28153154.28153472 AluJb SINE SINE
3860 chr1.28172340.28173094 MIRb SINE SINE
3861 chr1.28172340.28173094 L2b LINE LINE
3862 chr1.28172340.28173094 MIRc SINE SINE
3863 chr1.28172340.28173094 AluJr SINE SINE
3864 chr1.28173741.28174078 (CA)n Other Simple_repeat
3865 chr1.28173741.28174078 (CA)n Other Simple_repeat
3866 chr1.28190424.28191494 L1ME3C LINE LINE
3867 chr1.28190424.28191494 L1M5 LINE LINE
3868 chr1.28190424.28191494 (TC)n Other Simple_repeat
3869 chr1.28190424.28191494 MIRb SINE SINE
3870 chr1.28190424.28191494 (TCCTCT)n Other Simple_repeat
3871 chr1.28190424.28191494 FLAM_C SINE SINE
3872 chr1.28208815.28209205 (ATAA)n Other Simple_repeat
3873 chr1.28230141.28230312 <NA> <NA> <NA>
3874 chr1.28232375.28233140 L2c LINE LINE
3875 chr1.28232375.28233140 MIRb SINE SINE
3876 chr1.28235707.28237142 LTR16D1 LTR LTR
3877 chr1.28239094.28239320 FLAM_A SINE SINE
3878 chr1.28244918.28245103 <NA> <NA> <NA>
3879 chr1.28246944.28247553 AluSx1 SINE SINE
3880 chr1.28246944.28247553 (GAAA)n Other Simple_repeat
3881 chr1.28248331.28249254 MIR3 SINE SINE
3882 chr1.28248331.28249254 MIRc SINE SINE
3883 chr1.28259086.28260807 (CCCCTC)n Other Simple_repeat
3884 chr1.28259086.28260807 (CCTCC)n Other Simple_repeat
3885 chr1.28266995.28267278 <NA> <NA> <NA>
3886 chr1.28273199.28273790 MIRb SINE SINE
3887 chr1.28278761.28279332 MIRc SINE SINE
3888 chr1.28278761.28279332 MIRb SINE SINE
3889 chr1.28280521.28280975 <NA> <NA> <NA>
3890 chr1.28296757.28297282 MIR SINE SINE
3891 chr1.28313922.28314291 <NA> <NA> <NA>
3892 chr1.28328698.28329768 AluSz SINE SINE
3893 chr1.28328698.28329768 AluSp SINE SINE
3894 chr1.28328698.28329768 AluJr4 SINE SINE
3895 chr1.28343474.28343849 AluSx SINE SINE
3896 chr1.28346196.28346722 AluSx1 SINE SINE
3897 chr1.28346196.28346722 MARNA DNA DNA
3898 chr1.28346196.28346722 AluJr SINE SINE
3899 chr1.28351643.28352044 AluSc8 SINE SINE
3900 chr1.28351643.28352044 HAL1 LINE LINE
3901 chr1.28351643.28352044 (T)n Other Simple_repeat
3902 chr1.28351643.28352044 AluY SINE SINE
3903 chr1.28353583.28353891 MIRb SINE SINE
3904 chr1.28353583.28353891 AluSx SINE SINE
3905 chr1.28354060.28354708 L2a LINE LINE
3906 chr1.28354060.28354708 MIR SINE SINE
3907 chr1.28354060.28354708 L2b LINE LINE
3908 chr1.28359758.28359953 <NA> <NA> <NA>
3909 chr1.28369409.28370600 <NA> <NA> <NA>
3910 chr1.28391945.28392548 L1MA6 LINE LINE
3911 chr1.28391945.28392548 MER44C DNA DNA
3912 chr1.28391945.28392548 AluJb SINE SINE
3913 chr1.28400673.28401184 AluSx SINE SINE
3914 chr1.28400673.28401184 LTR38 LTR LTR
3915 chr1.28403191.28403525 LTR16A LTR LTR
3916 chr1.28416471.28416783 (GTA)n Other Simple_repeat
3917 chr1.28416471.28416783 L1M5 LINE LINE
3918 chr1.28417454.28417865 MER44B DNA DNA
3919 chr1.28417454.28417865 AluJo SINE SINE
3920 chr1.28433845.28434553 AluSx1 SINE SINE
3921 chr1.28433845.28434553 MIR3 SINE SINE
3922 chr1.28433845.28434553 AluSc8 SINE SINE
3923 chr1.28437423.28438441 AluJb SINE SINE
3924 chr1.28437423.28438441 MLT1A0 LTR LTR
3925 chr1.28456149.28456850 MSTA LTR LTR
3926 chr1.28456149.28456850 AluJb SINE SINE
3927 chr1.28456149.28456850 AluJb SINE SINE
3928 chr1.28458266.28458835 AluJb SINE SINE
3929 chr1.28471580.28471909 L2c LINE LINE
3930 chr1.28500992.28501314 AluSx1 SINE SINE
3931 chr1.28505563.28506939 AluSz6 SINE SINE
3932 chr1.28505563.28506939 AluSx SINE SINE
3933 chr1.28505563.28506939 AluSg SINE SINE
3934 chr1.28507085.28507721 U17 Other snRNA
3935 chr1.28507085.28507721 AluSg SINE SINE
3936 chr1.28517685.28519284 L2 LINE LINE
3937 chr1.28517685.28519284 (GCGG)n Other Simple_repeat
3938 chr1.28517685.28519284 L2b LINE LINE
3939 chr1.28537704.28538245 <NA> <NA> <NA>
3940 chr1.28544451.28545132 AluY SINE SINE
3941 chr1.28544451.28545132 LTR13 LTR LTR
3942 chr1.28552589.28553914 AluSc SINE SINE
3943 chr1.28552589.28553914 (GCCCC)n Other Simple_repeat
3944 chr1.28552589.28553914 MIR SINE SINE
3945 chr1.28581059.28582373 MIRb SINE SINE
3946 chr1.28581059.28582373 MIRb SINE SINE
3947 chr1.28590084.28590424 AluSc SINE SINE
3948 chr1.28590084.28590424 MIR SINE SINE
3949 chr1.28591563.28592156 MIRc SINE SINE
3950 chr1.28591563.28592156 L2c LINE LINE
3951 chr1.28591563.28592156 (GGCTGG)n Other Simple_repeat
3952 chr1.28592175.28593125 (GGCTGG)n Other Simple_repeat
3953 chr1.28592175.28593125 MIRb SINE SINE
3954 chr1.28592175.28593125 G-rich Other Low_complexity
3955 chr1.28601526.28602339 AluSz SINE SINE
3956 chr1.28601526.28602339 L2c LINE LINE
3957 chr1.28601526.28602339 MIR3 SINE SINE
3958 chr1.28604572.28605187 MamRTE1 LINE LINE
3959 chr1.28606749.28607097 MIRb SINE SINE
3960 chr1.28606749.28607097 L2c LINE LINE
3961 chr1.28642394.28643616 MIRb SINE SINE
3962 chr1.28646145.28646348 AluJo SINE SINE
3963 chr1.28648023.28649365 AluJr4 SINE SINE
3964 chr1.28648023.28649365 AluSc SINE SINE
3965 chr1.28648023.28649365 L1M4 LINE LINE
3966 chr1.28653942.28654449 AluSx SINE SINE
3967 chr1.28653942.28654449 HERVL-int LTR LTR
3968 chr1.28668280.28669939 MIR3 SINE SINE
3969 chr1.28668280.28669939 (CGCC)n Other Simple_repeat
3970 chr1.28668280.28669939 G-rich Other Low_complexity
3971 chr1.28682794.28683169 MER63A DNA DNA
3972 chr1.28718720.28719214 <NA> <NA> <NA>
3973 chr1.28736169.28738046 (TTCC)n Other Simple_repeat
3974 chr1.28750886.28752354 AluSz SINE SINE
3975 chr1.28750886.28752354 AluSx SINE SINE
3976 chr1.28750886.28752354 L2c LINE LINE
3977 chr1.28750886.28752354 MIRc SINE SINE
3978 chr1.28750886.28752354 MER63D DNA DNA
3979 chr1.28750886.28752354 AluSx4 SINE SINE
3980 chr1.28761177.28761496 AluJb SINE SINE
3981 chr1.28761177.28761496 AluSp SINE SINE
3982 chr1.28775124.28775537 <NA> <NA> <NA>
3983 chr1.28784926.28785752 L2b LINE LINE
3984 chr1.28784926.28785752 GA-rich Other Low_complexity
3985 chr1.28784926.28785752 AluYf1 SINE SINE
3986 chr1.28792748.28793246 AluJo SINE SINE
3987 chr1.28796782.28797177 <NA> <NA> <NA>
3988 chr1.28811811.28812688 MIRb SINE SINE
3989 chr1.28811811.28812688 G-rich Other Low_complexity
3990 chr1.28815394.28815765 AluJb SINE SINE
3991 chr1.28815394.28815765 (TGAA)n Other Simple_repeat
3992 chr1.28828431.28828737 Tigger1 DNA DNA
3993 chr1.28828431.28828737 FRAM SINE SINE
3994 chr1.28828431.28828737 AluSx SINE SINE
3995 chr1.28831397.28831816 AluSc SINE SINE
3996 chr1.28831397.28831816 AluJb SINE SINE
3997 chr1.28848289.28848780 MLT1A LTR LTR
3998 chr1.28848289.28848780 L2c LINE LINE
3999 chr1.28848289.28848780 MIR SINE SINE
4000 chr1.28860126.28860851 AluSx1 SINE SINE
4001 chr1.28860126.28860851 MLT1J2 LTR LTR
4002 chr1.28860126.28860851 MIRb SINE SINE
4003 chr1.28860126.28860851 MIRc SINE SINE
4004 chr1.28862317.28863903 MIR SINE SINE
4005 chr1.28862317.28863903 L2c LINE LINE
4006 chr1.28877071.28877601 (CACATA)n Other Simple_repeat
4007 chr1.28884646.28885279 (AC)n Other Simple_repeat
4008 chr1.28886815.28888430 AmnSINE2 SINE SINE
4009 chr1.28886815.28888430 (CCCGG)n Other Simple_repeat
4010 chr1.28886815.28888430 (TCTGTCG)n Other Simple_repeat
4011 chr1.28914115.28915607 MIR3 SINE SINE
4012 chr1.28914115.28915607 (TCGC)n Other Simple_repeat
4013 chr1.28914115.28915607 (GGC)n Other Simple_repeat
4014 chr1.28972221.28972835 AluJb SINE SINE
4015 chr1.28972221.28972835 AluJo SINE SINE
4016 chr1.28978819.28979246 Ricksha DNA DNA
4017 chr1.28983627.28983922 LTR1D LTR LTR
4018 chr1.28985292.28985891 L2a LINE LINE
4019 chr1.28985292.28985891 HY3 Other scRNA
4020 chr1.28985292.28985891 L1HS LINE LINE
4021 chr1.29033926.29034261 MIRc SINE SINE
4022 chr1.29033926.29034261 L2b LINE LINE
4023 chr1.29043403.29043976 MER3 DNA DNA
4024 chr1.29043403.29043976 L2a LINE LINE
4025 chr1.29090924.29091751 L2b LINE LINE
4026 chr1.29090924.29091751 MIRc SINE SINE
4027 chr1.29113242.29113984 MIRb SINE SINE
4028 chr1.29122199.29123767 <NA> <NA> <NA>
4029 chr1.29123877.29125030 (GCCCC)n Other Simple_repeat
4030 chr1.29123877.29125030 (CGCCAGA)n Other Simple_repeat
4031 chr1.29133735.29134362 G-rich Other Low_complexity
4032 chr1.29145699.29146260 <NA> <NA> <NA>
4033 chr1.29156549.29157467 MIR SINE SINE
4034 chr1.29156549.29157467 LTR14 LTR LTR
4035 chr1.29180897.29182361 (GGC)n Other Simple_repeat
4036 chr1.29180897.29182361 MIRb SINE SINE
4037 chr1.29196875.29197943 AluJb SINE SINE
4038 chr1.29196875.29197943 MER5A DNA DNA
4039 chr1.29196875.29197943 MIRc SINE SINE
4040 chr1.29196875.29197943 MIRb SINE SINE
4041 chr1.29202357.29203276 MIRc SINE SINE
4042 chr1.29208359.29208767 MIRc SINE SINE
4043 chr1.29208359.29208767 MIR3 SINE SINE
4044 chr1.29208895.29209836 L2c LINE LINE
4045 chr1.29208895.29209836 MER112 DNA DNA
4046 chr1.29208895.29209836 L2c LINE LINE
4047 chr1.29208895.29209836 MIRb SINE SINE
4048 chr1.29210258.29210504 AluY SINE SINE
4049 chr1.29210258.29210504 L2b LINE LINE
4050 chr1.29227108.29227795 AluSx SINE SINE
4051 chr1.29230575.29231276 MIRb SINE SINE
4052 chr1.29236179.29238589 L3 LINE LINE
4053 chr1.29236179.29238589 (GTGTTGT)n Other Simple_repeat
4054 chr1.29236179.29238589 (GT)n Other Simple_repeat
4055 chr1.29236179.29238589 (GT)n Other Simple_repeat
4056 chr1.29239135.29239523 <NA> <NA> <NA>
4057 chr1.29245711.29246231 <NA> <NA> <NA>
4058 chr1.29249193.29249654 (CACACA)n Other Simple_repeat
4059 chr1.29258505.29258940 <NA> <NA> <NA>
4060 chr1.29259341.29260344 G-rich Other Low_complexity
4061 chr1.29271452.29272540 MER102b DNA DNA
4062 chr1.29282947.29283682 <NA> <NA> <NA>
4063 chr1.29290426.29291030 MIRb SINE SINE
4064 chr1.29290426.29291030 L3 LINE LINE
4065 chr1.29302386.29302529 Tigger3b DNA DNA
4066 chr1.29306048.29306753 MIRb SINE SINE
4067 chr1.29306048.29306753 L2b LINE LINE
4068 chr1.29324950.29325242 <NA> <NA> <NA>
4069 chr1.29332151.29332721 LTR41C LTR LTR
4070 chr1.29415407.29415684 <NA> <NA> <NA>
4071 chr1.29425569.29425988 <NA> <NA> <NA>
4072 chr1.29426732.29427339 MIRb SINE SINE
4073 chr1.29453404.29453774 L2b LINE LINE
4074 chr1.29453404.29453774 (TCC)n Other Simple_repeat
4075 chr1.29498871.29499229 L3b LINE LINE
4076 chr1.29498871.29499229 MIRb SINE SINE
4077 chr1.29513366.29513776 MLT1K LTR LTR
4078 chr1.29513366.29513776 MLT1K LTR LTR
4079 chr1.29550140.29550640 G-rich Other Low_complexity
4080 chr1.29550140.29550640 MLT1I LTR LTR
4081 chr1.29551658.29552153 L2b LINE LINE
4082 chr1.29551658.29552153 MER91C DNA DNA
4083 chr1.29554065.29554841 MIRb SINE SINE
4084 chr1.29554065.29554841 (TG)n Other Simple_repeat
4085 chr1.29563371.29563982 HERV4_I-int LTR LTR
4086 chr1.29569956.29570517 LTR8 LTR LTR
4087 chr1.29579599.29580377 L1ME3A LINE LINE
4088 chr1.29592612.29593233 <NA> <NA> <NA>
4089 chr1.29639938.29640560 MIRb SINE SINE
4090 chr1.29649468.29649817 MLT1K LTR LTR
4091 chr1.29675489.29676081 MSTA LTR LTR
4092 chr1.29682440.29683259 MIRb SINE SINE
4093 chr1.29688442.29689044 L1MCc LINE LINE
4094 chr1.29697948.29698481 G-rich Other Low_complexity
4095 chr1.29697948.29698481 (GCAGG)n Other Simple_repeat
4096 chr1.29703648.29703981 <NA> <NA> <NA>
4097 chr1.29706906.29707289 G-rich Other Low_complexity
4098 chr1.29709296.29710125 MIRc SINE SINE
4099 chr1.29793021.29793522 MER58B DNA DNA
4100 chr1.29793021.29793522 LTR41B LTR LTR
4101 chr1.29811354.29811580 L2a LINE LINE
4102 chr1.29812538.29812986 <NA> <NA> <NA>
4103 chr1.29824637.29825932 (CAGGC)n Other Simple_repeat
4104 chr1.29824637.29825932 (CA)n Other Simple_repeat
4105 chr1.29838880.29839175 MIRc SINE SINE
4106 chr1.29838880.29839175 MLT1O LTR LTR
4107 chr1.29849112.29849511 LTR16C LTR LTR
4108 chr1.29855864.29856070 <NA> <NA> <NA>
4109 chr1.29856641.29857202 (GGCTG)n Other Simple_repeat
4110 chr1.29864986.29865426 L1ME3G LINE LINE
4111 chr1.29866649.29866940 L2a LINE LINE
4112 chr1.29897425.29897656 <NA> <NA> <NA>
4113 chr1.29900669.29901155 MIR SINE SINE
4114 chr1.29901527.29901944 MIR3 SINE SINE
4115 chr1.29962210.29963259 <NA> <NA> <NA>
4116 chr1.29973428.29973689 <NA> <NA> <NA>
4117 chr1.29974151.29974932 MIRb SINE SINE
4118 chr1.29974151.29974932 MIR3 SINE SINE
4119 chr1.29975011.29975341 MIR3 SINE SINE
4120 chr1.30001053.30001726 MIRb SINE SINE
4121 chr1.30001053.30001726 MIRb SINE SINE
4122 chr1.30001053.30001726 MER85 DNA DNA
4123 chr1.30001053.30001726 MIRb SINE SINE
4124 chr1.30008313.30008848 ERV3-16A3_LTR LTR LTR
4125 chr1.30008313.30008848 MIRc SINE SINE
4126 chr1.30008313.30008848 (GT)n Other Simple_repeat
4127 chr1.30008313.30008848 (TGTGTG)n Other Simple_repeat
4128 chr1.30034478.30035089 MIRb SINE SINE
4129 chr1.30058985.30059358 MLT1K LTR LTR
4130 chr1.30083700.30084640 L2b LINE LINE
4131 chr1.30083700.30084640 MIR3 SINE SINE
4132 chr1.30083700.30084640 MLT1O LTR LTR
4133 chr1.30088734.30089362 AluSz SINE SINE
4134 chr1.30088734.30089362 ORSL-2a DNA DNA
4135 chr1.30106046.30106426 MIRb SINE SINE
4136 chr1.30106046.30106426 MIR SINE SINE
4137 chr1.30128715.30129420 (TTTC)n Other Simple_repeat
4138 chr1.30128715.30129420 G-rich Other Low_complexity
4139 chr1.30172525.30172906 MIR SINE SINE
4140 chr1.30172525.30172906 MIRb SINE SINE
4141 chr1.30184688.30185120 <NA> <NA> <NA>
4142 chr1.30191125.30191637 L2 LINE LINE
4143 chr1.30220876.30221249 L1ME4b LINE LINE
4144 chr1.30264348.30265143 MIR3 SINE SINE
4145 chr1.30264348.30265143 MIR SINE SINE
4146 chr1.30264348.30265143 MER33 DNA DNA
4147 chr1.30286700.30287245 <NA> <NA> <NA>
4148 chr1.30511769.30512470 L2c LINE LINE
4149 chr1.30511769.30512470 MIR SINE SINE
4150 chr1.30511769.30512470 LTR33 LTR LTR
4151 chr1.30513162.30513526 L2b LINE LINE
4152 chr1.30513162.30513526 L2b LINE LINE
4153 chr1.30513162.30513526 MIR3 SINE SINE
4154 chr1.30513162.30513526 LTR16E1 LTR LTR
4155 chr1.30522377.30522906 LTR33 LTR LTR
4156 chr1.30522377.30522906 L2b LINE LINE
4157 chr1.30523109.30523601 MIR SINE SINE
4158 chr1.30525897.30526442 <NA> <NA> <NA>
4159 chr1.30527401.30528026 L2b LINE LINE
4160 chr1.30600696.30601002 LTR27 LTR LTR
4161 chr1.30618275.30618893 MIR3 SINE SINE
4162 chr1.30618275.30618893 MIRb SINE SINE
4163 chr1.30638800.30639502 <NA> <NA> <NA>
4164 chr1.30655685.30656447 MER91C DNA DNA
4165 chr1.30655685.30656447 L2b LINE LINE
4166 chr1.30668107.30668296 AluSz6 SINE SINE
4167 chr1.30685165.30685906 (CCCCGC)n Other Simple_repeat
4168 chr1.30685165.30685906 MLT1O LTR LTR
4169 chr1.30697798.30698606 <NA> <NA> <NA>
4170 chr1.30700988.30701558 L2b LINE LINE
4171 chr1.30706514.30707085 MIRb SINE SINE
4172 chr1.30707258.30708416 MIRb SINE SINE
4173 chr1.30707258.30708416 L1MA9 LINE LINE
4174 chr1.30713472.30713676 <NA> <NA> <NA>
4175 chr1.30717999.30719579 <NA> <NA> <NA>
4176 chr1.30727698.30728202 (TCTC)n Other Simple_repeat
4177 chr1.30727698.30728202 L3b LINE LINE
4178 chr1.30732387.30732999 (GT)n Other Simple_repeat
4179 chr1.30756544.30757176 MIR SINE SINE
4180 chr1.30756544.30757176 L3b LINE LINE
4181 chr1.30756544.30757176 MIR3 SINE SINE
4182 chr1.30763596.30763983 MIR3 SINE SINE
4183 chr1.30773435.30773923 AluJr SINE SINE
4184 chr1.30773435.30773923 (AGGAG)n Other Simple_repeat
4185 chr1.30778434.30778677 MIR SINE SINE
4186 chr1.30778434.30778677 MLT1K LTR LTR
4187 chr1.30779556.30780057 MIRc SINE SINE
4188 chr1.30779556.30780057 MIRb SINE SINE
4189 chr1.30779556.30780057 L1MB3 LINE LINE
4190 chr1.30779556.30780057 AluJb SINE SINE
4191 chr1.30782430.30783306 (CCCCAA)n Other Simple_repeat
4192 chr1.30782430.30783306 MIR3 SINE SINE
4193 chr1.30798233.30798615 MIR SINE SINE
4194 chr1.30798233.30798615 MER102b DNA DNA
4195 chr1.30801540.30802206 MIR3 SINE SINE
4196 chr1.30803394.30803842 MIRb SINE SINE
4197 chr1.30803394.30803842 MIRb SINE SINE
4198 chr1.30809294.30810325 L1ME4c LINE LINE
4199 chr1.30809294.30810325 L2a LINE LINE
4200 chr1.30809294.30810325 LTR85a LTR LTR
4201 chr1.30816345.30817355 L2b LINE LINE
4202 chr1.30816345.30817355 MIRb SINE SINE
4203 chr1.30816345.30817355 MIRc SINE SINE
4204 chr1.30818615.30818842 L2a LINE LINE
4205 chr1.30823782.30824966 L2b LINE LINE
4206 chr1.30823782.30824966 L2c LINE LINE
4207 chr1.30842633.30842994 MIR3 SINE SINE
4208 chr1.30847440.30847730 (CCCCT)n Other Simple_repeat
4209 chr1.30852070.30852415 (GT)n Other Simple_repeat
4210 chr1.30854231.30854385 MLT1J LTR LTR
4211 chr1.30856234.30856806 (AC)n Other Simple_repeat
4212 chr1.30856234.30856806 MIR SINE SINE
4213 chr1.30858435.30859250 L2b LINE LINE
4214 chr1.30858435.30859250 (CA)n Other Simple_repeat
4215 chr1.30858435.30859250 L2b LINE LINE
4216 chr1.30887564.30888986 L2b LINE LINE
4217 chr1.30887564.30888986 MIR3 SINE SINE
4218 chr1.30887564.30888986 (CA)n Other Simple_repeat
4219 chr1.30894525.30895021 (GT)n Other Simple_repeat
4220 chr1.30901244.30901516 <NA> <NA> <NA>
4221 chr1.30905801.30906126 (AC)n Other Simple_repeat
4222 chr1.30905801.30906126 (AC)n Other Simple_repeat
4223 chr1.30907242.30908066 (CA)n Other Simple_repeat
4224 chr1.30907242.30908066 (TCCCCC)n Other Simple_repeat
4225 chr1.30908652.30908989 G-rich Other Low_complexity
4226 chr1.30908652.30908989 G-rich Other Low_complexity
4227 chr1.30908652.30908989 (GCCCCCA)n Other Simple_repeat
4228 chr1.30911202.30911822 L3 LINE LINE
4229 chr1.30929117.30929868 MIRc SINE SINE
4230 chr1.30929117.30929868 MIRc SINE SINE
4231 chr1.30933349.30934446 (CA)n Other Simple_repeat
4232 chr1.30933349.30934446 MIR SINE SINE
4233 chr1.30933349.30934446 L2a LINE LINE
4234 chr1.30936635.30937190 <NA> <NA> <NA>
4235 chr1.30941915.30942130 <NA> <NA> <NA>
4236 chr1.30942454.30942984 AluJr SINE SINE
4237 chr1.30948714.30949180 AluJb SINE SINE
4238 chr1.30964535.30965159 <NA> <NA> <NA>
4239 chr1.30966783.30967206 <NA> <NA> <NA>
4240 chr1.30975997.30976465 AluSx1 SINE SINE
4241 chr1.30977140.30977453 Tigger4b DNA DNA
4242 chr1.30990625.30990867 <NA> <NA> <NA>
4243 chr1.30996256.30996482 <NA> <NA> <NA>
4244 chr1.31007286.31007904 <NA> <NA> <NA>
4245 chr1.31010211.31010980 MLT1F2 LTR LTR
4246 chr1.31010211.31010980 MLT1F2 LTR LTR
4247 chr1.31010211.31010980 AluJr SINE SINE
4248 chr1.31025125.31025766 AluSx SINE SINE
4249 chr1.31036496.31037107 AluJr SINE SINE
4250 chr1.31038282.31038638 L2a LINE LINE
4251 chr1.31041576.31041749 MSTB LTR LTR
4252 chr1.31047164.31047604 AluSg SINE SINE
4253 chr1.31064801.31066233 MIRb SINE SINE
4254 chr1.31101003.31101423 <NA> <NA> <NA>
4255 chr1.31111050.31111657 L2c LINE LINE
4256 chr1.31111050.31111657 AluSz6 SINE SINE
4257 chr1.31111050.31111657 L2c LINE LINE
4258 chr1.31111050.31111657 MIRb SINE SINE
4259 chr1.31119779.31121081 AluSx SINE SINE
4260 chr1.31119779.31121081 AluJb SINE SINE
4261 chr1.31119779.31121081 (CA)n Other Simple_repeat
4262 chr1.31119779.31121081 MamGypLTR3a LTR LTR
4263 chr1.31119779.31121081 MER63A DNA DNA
4264 chr1.31119779.31121081 MIRb SINE SINE
4265 chr1.31127298.31127782 L1ME3G LINE LINE
4266 chr1.31127298.31127782 L2c LINE LINE
4267 chr1.31127298.31127782 MIRb SINE SINE
4268 chr1.31127298.31127782 AluSq2 SINE SINE
4269 chr1.31145656.31146083 LTR23 LTR LTR
4270 chr1.31145656.31146083 L2b LINE LINE
4271 chr1.31145656.31146083 L1ME3G LINE LINE
4272 chr1.31145656.31146083 L1ME3G LINE LINE
4273 chr1.31154574.31155174 MIRb SINE SINE
4274 chr1.31154574.31155174 G-rich Other Low_complexity
4275 chr1.31155264.31155859 MIRc SINE SINE
4276 chr1.31155264.31155859 LTR54 LTR LTR
4277 chr1.31162622.31163103 AluSq SINE SINE
4278 chr1.31162622.31163103 MIR SINE SINE
4279 chr1.31162622.31163103 (TG)n Other Simple_repeat
4280 chr1.31170614.31171212 AluSz6 SINE SINE
4281 chr1.31170614.31171212 MIR3 SINE SINE
4282 chr1.31170614.31171212 LTR8 LTR LTR
4283 chr1.31181553.31182041 (TCCAAG)n Other Simple_repeat
4284 chr1.31182066.31182670 <NA> <NA> <NA>
4285 chr1.31185612.31185944 MIRc SINE SINE
4286 chr1.31185612.31185944 MER5B DNA DNA
4287 chr1.31185612.31185944 MER5A DNA DNA
4288 chr1.31185612.31185944 L2b LINE LINE
4289 chr1.31215933.31216471 MIR SINE SINE
4290 chr1.31215933.31216471 MIR SINE SINE
4291 chr1.31223943.31224130 L3 LINE LINE
4292 chr1.31238751.31240149 (CA)n Other Simple_repeat
4293 chr1.31238751.31240149 (GCGCCGG)n Other Simple_repeat
4294 chr1.31238751.31240149 (GCGCGGA)n Other Simple_repeat
4295 chr1.31238751.31240149 (AGCGC)n Other Simple_repeat
4296 chr1.31238751.31240149 G-rich Other Low_complexity
4297 chr1.31238751.31240149 MIRb SINE SINE
4298 chr1.31272465.31272680 MIRb SINE SINE
4299 chr1.31274966.31275436 MIR3 SINE SINE
4300 chr1.31274966.31275436 AluSz6 SINE SINE
4301 chr1.31296376.31297872 L2b LINE LINE
4302 chr1.31296376.31297872 L2b LINE LINE
4303 chr1.31306277.31306875 MER44C DNA DNA
4304 chr1.31306277.31306875 L4_A_Mam LINE LINE
4305 chr1.31306277.31306875 AluJr SINE SINE
4306 chr1.31306277.31306875 AluSc SINE SINE
4307 chr1.31326519.31326784 (GCTGACA)n Other Simple_repeat
4308 chr1.31355961.31356159 <NA> <NA> <NA>
4309 chr1.31368615.31369137 <NA> <NA> <NA>
4310 chr1.31372737.31374023 MIRb SINE SINE
4311 chr1.31381612.31382921 MIR3 SINE SINE
4312 chr1.31381612.31382921 L2b LINE LINE
4313 chr1.31381612.31382921 L2b LINE LINE
4314 chr1.31381612.31382921 MLT1J LTR LTR
4315 chr1.31388445.31388701 MER45A DNA DNA
4316 chr1.31394462.31395288 MIR3 SINE SINE
4317 chr1.31394462.31395288 MIRc SINE SINE
4318 chr1.31394462.31395288 MIR3 SINE SINE
4319 chr1.31394462.31395288 AluSx1 SINE SINE
4320 chr1.31407064.31407480 MamRep4096 DNA DNA
4321 chr1.31413014.31414186 (GGGGCC)n Other Simple_repeat
4322 chr1.31413014.31414186 (GTCC)n Other Simple_repeat
4323 chr1.31421420.31421830 L2c LINE LINE
4324 chr1.31422488.31423139 L2c LINE LINE
4325 chr1.31422488.31423139 L2a LINE LINE
4326 chr1.31444784.31445274 LTR44 LTR LTR
4327 chr1.31444784.31445274 MIRb SINE SINE
4328 chr1.31505895.31506223 <NA> <NA> <NA>
4329 chr1.31520748.31521299 MamTip3 DNA DNA
4330 chr1.31523824.31524164 MIR SINE SINE
4331 chr1.31530928.31531857 ERV24B_Prim-int LTR LTR
4332 chr1.31532120.31532534 ERV24B_Prim-int LTR LTR
4333 chr1.31548645.31550209 L2a LINE LINE
4334 chr1.31548645.31550209 MIR3 SINE SINE
4335 chr1.31548645.31550209 L2a LINE LINE
4336 chr1.31548645.31550209 MER99 DNA DNA
4337 chr1.31562823.31563510 MER41B LTR LTR
4338 chr1.31563970.31564531 MIRb SINE SINE
4339 chr1.31563970.31564531 MIR3 SINE SINE
4340 chr1.31563970.31564531 L2b LINE LINE
4341 chr1.31573835.31574589 AluY SINE SINE
4342 chr1.31573835.31574589 AluJb SINE SINE
4343 chr1.31574909.31575218 <NA> <NA> <NA>
4344 chr1.31576320.31576859 <NA> <NA> <NA>
4345 chr1.31577894.31578159 MIR SINE SINE
4346 chr1.31580281.31580783 L2b LINE LINE
4347 chr1.31591676.31592267 MIRb SINE SINE
4348 chr1.31591676.31592267 (TCTCTG)n Other Simple_repeat
4349 chr1.31593885.31594549 L2b LINE LINE
4350 chr1.31593885.31594549 MIRb SINE SINE
4351 chr1.31593885.31594549 AluJb SINE SINE
4352 chr1.31617678.31618447 (TG)n Other Simple_repeat
4353 chr1.31625525.31625962 <NA> <NA> <NA>
4354 chr1.31627704.31628450 <NA> <NA> <NA>
4355 chr1.31629032.31629285 L3 LINE LINE
4356 chr1.31633106.31633400 <NA> <NA> <NA>
4357 chr1.31634548.31635028 MLT1I LTR LTR
4358 chr1.31639387.31639877 L2b LINE LINE
4359 chr1.31639387.31639877 L2c LINE LINE
4360 chr1.31644350.31645403 MIR3 SINE SINE
4361 chr1.31646788.31647448 L2 LINE LINE
4362 chr1.31646788.31647448 L2c LINE LINE
4363 chr1.31663925.31664312 (GGGAAG)n Other Simple_repeat
4364 chr1.31663925.31664312 MIR3 SINE SINE
4365 chr1.31666223.31666941 L2a LINE LINE
4366 chr1.31666223.31666941 L2a LINE LINE
4367 chr1.31669741.31670294 <NA> <NA> <NA>
4368 chr1.31674837.31676298 L2a LINE LINE
4369 chr1.31674837.31676298 AluJo SINE SINE
4370 chr1.31674837.31676298 MIR SINE SINE
4371 chr1.31674837.31676298 AluSx SINE SINE
4372 chr1.31681440.31682003 MIRb SINE SINE
4373 chr1.31681440.31682003 MIRc SINE SINE
4374 chr1.31681440.31682003 MIR3 SINE SINE
4375 chr1.31681440.31682003 Charlie19a DNA DNA
4376 chr1.31684136.31684366 <NA> <NA> <NA>
4377 chr1.31689722.31690342 MIRb SINE SINE
4378 chr1.31691989.31692294 <NA> <NA> <NA>
4379 chr1.31700871.31701505 <NA> <NA> <NA>
4380 chr1.31703594.31704291 MIR3 SINE SINE
4381 chr1.31703594.31704291 (GGA)n Other Simple_repeat
4382 chr1.31708251.31708660 AluJr SINE SINE
4383 chr1.31708251.31708660 L2a LINE LINE
4384 chr1.31712557.31713100 MIR SINE SINE
4385 chr1.31714326.31715876 MIR3 SINE SINE
4386 chr1.31723816.31724209 MIRc SINE SINE
4387 chr1.31726064.31726655 MIRb SINE SINE
4388 chr1.31726064.31726655 MIR SINE SINE
4389 chr1.31734544.31734907 L3 LINE LINE
4390 chr1.31736868.31737386 <NA> <NA> <NA>
4391 chr1.31745185.31745979 OldhAT1 DNA DNA
4392 chr1.31746775.31747121 L2b LINE LINE
4393 chr1.31748291.31748789 MIRb SINE SINE
4394 chr1.31748291.31748789 L2b LINE LINE
4395 chr1.31750393.31751083 L2c LINE LINE
4396 chr1.31751945.31752384 MIRb SINE SINE
4397 chr1.31755167.31755639 L2b LINE LINE
4398 chr1.31760491.31761362 G-rich Other Low_complexity
4399 chr1.31760491.31761362 (CGCC)n Other Simple_repeat
4400 chr1.31760491.31761362 G-rich Other Low_complexity
4401 chr1.31761864.31763352 MIRb SINE SINE
4402 chr1.31761864.31763352 G-rich Other Low_complexity
4403 chr1.31761864.31763352 (CCACC)n Other Simple_repeat
4404 chr1.31764418.31765437 (CATGTG)n Other Simple_repeat
4405 chr1.31769809.31770423 MIR SINE SINE
4406 chr1.31770933.31771581 (GT)n Other Simple_repeat
4407 chr1.31772222.31772821 <NA> <NA> <NA>
4408 chr1.31780836.31781623 L2b LINE LINE
4409 chr1.31780836.31781623 L2b LINE LINE
4410 chr1.31781749.31782837 G-rich Other Low_complexity
4411 chr1.31781749.31782837 (TG)n Other Simple_repeat
4412 chr1.31788117.31789674 MIRc SINE SINE
4413 chr1.31795969.31796608 MIRb SINE SINE
4414 chr1.31798519.31799217 MIRb SINE SINE
4415 chr1.31798519.31799217 MIR3 SINE SINE
4416 chr1.31798519.31799217 MIR3 SINE SINE
4417 chr1.31811569.31811897 MIRb SINE SINE
4418 chr1.31813914.31814808 <NA> <NA> <NA>
4419 chr1.31815491.31816224 MIRc SINE SINE
4420 chr1.31827034.31827385 LTR16E1 LTR LTR
4421 chr1.31827034.31827385 LTR16E1 LTR LTR
4422 chr1.31830148.31830525 <NA> <NA> <NA>
4423 chr1.31831696.31832874 MIRb SINE SINE
4424 chr1.31831696.31832874 MIRb SINE SINE
4425 chr1.31831696.31832874 MIR SINE SINE
4426 chr1.31855512.31855791 L2a LINE LINE
4427 chr1.31855512.31855791 MIR SINE SINE
4428 chr1.31866257.31866639 AluSx3 SINE SINE
4429 chr1.31866257.31866639 MER49 LTR LTR
4430 chr1.31880287.31880716 MIRb SINE SINE
4431 chr1.31880287.31880716 MIR1_Amn SINE SINE
4432 chr1.31880287.31880716 GA-rich Other Low_complexity
4433 chr1.31881141.31882009 L1ME4b LINE LINE
4434 chr1.31923796.31924199 AluJo SINE SINE
4435 chr1.31932571.31932791 <NA> <NA> <NA>
4436 chr1.31937317.31938849 (CGG)n Other Simple_repeat
4437 chr1.31937317.31938849 (CGGCG)n Other Simple_repeat
4438 chr1.31937317.31938849 (CGG)n Other Simple_repeat
4439 chr1.31937317.31938849 (GCC)n Other Simple_repeat
4440 chr1.31937317.31938849 (GCTG)n Other Simple_repeat
4441 chr1.31939868.31940071 <NA> <NA> <NA>
4442 chr1.31944088.31945051 MIRb SINE SINE
4443 chr1.31944088.31945051 MER2 DNA DNA
4444 chr1.31954695.31955567 (AGGC)n Other Simple_repeat
4445 chr1.31954695.31955567 MIR SINE SINE
4446 chr1.31955985.31956683 AluSq SINE SINE
4447 chr1.31963970.31964616 AluSp SINE SINE
4448 chr1.31970738.31971371 AluJb SINE SINE
4449 chr1.31970738.31971371 (T)n Other Simple_repeat
4450 chr1.31970738.31971371 LTR79 LTR LTR
4451 chr1.31977708.31978183 LTR33 LTR LTR
4452 chr1.31977708.31978183 LTR50 LTR LTR
4453 chr1.31978887.31979334 AluJo SINE SINE
4454 chr1.31981944.31982275 MLT1K LTR LTR
4455 chr1.31981944.31982275 L2b LINE LINE
4456 chr1.31984728.31984978 L2b LINE LINE
4457 chr1.31987233.31987610 <NA> <NA> <NA>
4458 chr1.32003534.32003831 Charlie8 DNA DNA
4459 chr1.32013246.32015077 <NA> <NA> <NA>
4460 chr1.32031875.32032481 <NA> <NA> <NA>
4461 chr1.32037622.32038152 <NA> <NA> <NA>
4462 chr1.32052888.32053343 AluJo SINE SINE
4463 chr1.32052888.32053343 L2b LINE LINE
4464 chr1.32055953.32056246 <NA> <NA> <NA>
4465 chr1.32062276.32063082 AluY SINE SINE
4466 chr1.32062276.32063082 MIRb SINE SINE
4467 chr1.32063364.32063716 <NA> <NA> <NA>
4468 chr1.32066468.32066810 AluJo SINE SINE
4469 chr1.32066468.32066810 MIRc SINE SINE
4470 chr1.32072387.32073671 L2 LINE LINE
4471 chr1.32107705.32108941 AluSq10 SINE SINE
4472 chr1.32116218.32116391 AluYk3 SINE SINE
4473 chr1.32116218.32116391 Tigger1 DNA DNA
4474 chr1.32116218.32116391 AluSp SINE SINE
4475 chr1.32120802.32121630 AluSx1 SINE SINE
4476 chr1.32120802.32121630 AluSz SINE SINE
4477 chr1.32120802.32121630 L2 LINE LINE
4478 chr1.32133363.32133842 L1M4c LINE LINE
4479 chr1.32133363.32133842 AluJo SINE SINE
4480 chr1.32133363.32133842 L1M4c LINE LINE
4481 chr1.32133363.32133842 AluSx1 SINE SINE
4482 chr1.32139080.32139311 L2b LINE LINE
4483 chr1.32142753.32143219 AluJb SINE SINE
4484 chr1.32150970.32151793 AluJr SINE SINE
4485 chr1.32150970.32151793 L1MEc LINE LINE
4486 chr1.32150970.32151793 L1MEc LINE LINE
4487 chr1.32179291.32180895 MIR3 SINE SINE
4488 chr1.32179291.32180895 (GC)n Other Simple_repeat
4489 chr1.32199754.32201716 MIR SINE SINE
4490 chr1.32199754.32201716 (CTG)n Other Simple_repeat
4491 chr1.32199754.32201716 (TC)n Other Simple_repeat
4492 chr1.32205284.32206087 <NA> <NA> <NA>
4493 chr1.32208912.32209294 <NA> <NA> <NA>
4494 chr1.32215525.32216081 <NA> <NA> <NA>
4495 chr1.32221907.32222971 AluJo SINE SINE
4496 chr1.32235965.32236555 L2c LINE LINE
4497 chr1.32235965.32236555 Tigger7 DNA DNA
4498 chr1.32235965.32236555 Tigger7 DNA DNA
4499 chr1.32235965.32236555 AluSc8 SINE SINE
4500 chr1.32239895.32241735 <NA> <NA> <NA>
4501 chr1.32248016.32248707 MER5B DNA DNA
4502 chr1.32248016.32248707 (GAGCCG)n Other Simple_repeat
4503 chr1.32263881.32264464 AluJb SINE SINE
4504 chr1.32263881.32264464 FLAM_A SINE SINE
4505 chr1.32272889.32274099 (TG)n Other Simple_repeat
4506 chr1.32276309.32276840 <NA> <NA> <NA>
4507 chr1.32291765.32292706 MIR3 SINE SINE
4508 chr1.32291765.32292706 (GGGCC)n Other Simple_repeat
4509 chr1.32304086.32304617 L2c LINE LINE
4510 chr1.32304086.32304617 AluJr SINE SINE
4511 chr1.32304086.32304617 AluSz SINE SINE
4512 chr1.32316241.32317070 AluY SINE SINE
4513 chr1.32316241.32317070 MIRc SINE SINE
4514 chr1.32316241.32317070 MIR3 SINE SINE
4515 chr1.32335018.32336661 (CCCCT)n Other Simple_repeat
4516 chr1.32335018.32336661 (CTCCG)n Other Simple_repeat
4517 chr1.32345310.32345906 L2 LINE LINE
4518 chr1.32345310.32345906 L2 LINE LINE
4519 chr1.32351102.32352459 <NA> <NA> <NA>
4520 chr1.32353992.32354346 L2-3_Crp LINE LINE
4521 chr1.32361721.32362753 G-rich Other Low_complexity
4522 chr1.32361721.32362753 G-rich Other Low_complexity
4523 chr1.32372126.32372448 <NA> <NA> <NA>
4524 chr1.32393937.32395307 L2a LINE LINE
4525 chr1.32400724.32401432 MIRb SINE SINE
4526 chr1.32400724.32401432 MER45A DNA DNA
4527 chr1.32400724.32401432 AluSx3 SINE SINE
4528 chr1.32413683.32414198 HUERS-P3b-int LTR LTR
4529 chr1.32447987.32449057 HERVIP10FH-int LTR LTR
4530 chr1.32447987.32449057 LTR13 LTR LTR
4531 chr1.32464203.32465543 MLT1C LTR LTR
4532 chr1.32464203.32465543 L2a LINE LINE
4533 chr1.32471055.32471407 (GGC)n Other Simple_repeat
4534 chr1.32485489.32485894 <NA> <NA> <NA>
4535 chr1.32487193.32487636 Charlie10 DNA DNA
4536 chr1.32487193.32487636 AluSz SINE SINE
4537 chr1.32492502.32492942 AluSq SINE SINE
4538 chr1.32492502.32492942 L2c LINE LINE
4539 chr1.32494112.32494983 AluSq SINE SINE
4540 chr1.32494112.32494983 MIR3 SINE SINE
4541 chr1.32494112.32494983 (AC)n Other Simple_repeat
4542 chr1.32494112.32494983 AluSx SINE SINE
4543 chr1.32500112.32501333 L1MB5 LINE LINE
4544 chr1.32500112.32501333 (GGGCGAGA)n Other Simple_repeat
4545 chr1.32500112.32501333 (GGC)n Other Simple_repeat
4546 chr1.32500112.32501333 G-rich Other Low_complexity
4547 chr1.32500112.32501333 (CCGG)n Other Simple_repeat
4548 chr1.32500112.32501333 L1MC4 LINE LINE
4549 chr1.32500112.32501333 AluJb SINE SINE
4550 chr1.32520391.32521025 LTR41C LTR LTR
4551 chr1.32520391.32521025 AluY SINE SINE
4552 chr1.32520391.32521025 AluSq2 SINE SINE
4553 chr1.32525866.32526321 AluJb SINE SINE
4554 chr1.32525866.32526321 MER58B DNA DNA
4555 chr1.32525866.32526321 MLT1I LTR LTR
4556 chr1.32650293.32651803 <NA> <NA> <NA>
4557 chr1.32661198.32661678 L1P4 LINE LINE
4558 chr1.32661198.32661678 AluSp SINE SINE
4559 chr1.32661198.32661678 L1P4 LINE LINE
4560 chr1.32666945.32667515 LTR13A LTR LTR
4561 chr1.32685537.32685861 <NA> <NA> <NA>
4562 chr1.32695230.32695636 <NA> <NA> <NA>
4563 chr1.32701191.32703771 AluSq2 SINE SINE
4564 chr1.32701191.32703771 L2c LINE LINE
4565 chr1.32701191.32703771 MIR3 SINE SINE
4566 chr1.32712099.32712670 MIRb SINE SINE
4567 chr1.32712099.32712670 MIRb SINE SINE
4568 chr1.32716705.32717049 <NA> <NA> <NA>
4569 chr1.32724940.32725508 MIRb SINE SINE
4570 chr1.32729928.32730396 AluJb SINE SINE
4571 chr1.32729928.32730396 UCON132b DNA DNA
4572 chr1.32729928.32730396 MIRb SINE SINE
4573 chr1.32741314.32741868 <NA> <NA> <NA>
4574 chr1.32746315.32746565 MIRb SINE SINE
4575 chr1.32753678.32754850 (ACAC)n Other Simple_repeat
4576 chr1.32753678.32754850 (AC)n Other Simple_repeat
4577 chr1.32758889.32759176 MIRb SINE SINE
4578 chr1.32758889.32759176 MIRb SINE SINE
4579 chr1.32759802.32760576 MIRc SINE SINE
4580 chr1.32759802.32760576 (GT)n Other Simple_repeat
4581 chr1.32767692.32768029 (TCCCC)n Other Simple_repeat
4582 chr1.32769558.32770485 MER103C DNA DNA
4583 chr1.32769558.32770485 (GGAGGC)n Other Simple_repeat
4584 chr1.32772895.32773483 <NA> <NA> <NA>
4585 chr1.32791965.32792184 L1MEg LINE LINE
4586 chr1.32806394.32806652 Tigger1 DNA DNA
4587 chr1.32806770.32807394 LTR38A1 LTR LTR
4588 chr1.32806770.32807394 L1PA15 LINE LINE
4589 chr1.32806770.32807394 LTR38A1 LTR LTR
4590 chr1.32810312.32810835 L2a LINE LINE
4591 chr1.32816725.32818601 L2c LINE LINE
4592 chr1.32830268.32831011 AluSz6 SINE SINE
4593 chr1.32869723.32871714 (GAGTGA)n Other Simple_repeat
4594 chr1.32869723.32871714 (GAGACA)n Other Simple_repeat
4595 chr1.32869723.32871714 (CCCGCC)n Other Simple_repeat
4596 chr1.32869723.32871714 MIRb SINE SINE
4597 chr1.32872672.32873097 <NA> <NA> <NA>
4598 chr1.32876572.32877102 MIR SINE SINE
4599 chr1.32886393.32887452 (CCG)n Other Simple_repeat
4600 chr1.32892879.32893429 <NA> <NA> <NA>
4601 chr1.32899964.32900785 (ACCC)n Other Simple_repeat
4602 chr1.32899964.32900785 AluJr SINE SINE
4603 chr1.32899964.32900785 MIRb SINE SINE
4604 chr1.32901128.32901714 MIR3 SINE SINE
4605 chr1.32912532.32913088 MER3 DNA DNA
4606 chr1.32912532.32913088 L2a LINE LINE
4607 chr1.32912532.32913088 Charlie1a DNA DNA
4608 chr1.32925502.32926257 HERVS71-int LTR LTR
4609 chr1.32933471.32933918 AluY SINE SINE
4610 chr1.32933471.32933918 MIRc SINE SINE
4611 chr1.32933939.32934421 AluSz6 SINE SINE
4612 chr1.32939639.32940159 MIR3 SINE SINE
4613 chr1.32947592.32948101 AluSx1 SINE SINE
4614 chr1.32953327.32953841 <NA> <NA> <NA>
4615 chr1.32963749.32965094 (CCGCGG)n Other Simple_repeat
4616 chr1.32963749.32965094 (CGC)n Other Simple_repeat
4617 chr1.32972745.32973750 (GCCCCC)n Other Simple_repeat
4618 chr1.32972745.32973750 G-rich Other Low_complexity
4619 chr1.32972745.32973750 (T)n Other Simple_repeat
4620 chr1.32972745.32973750 SVA_E Retroposon Retroposon
4621 chr1.32975158.32975845 SVA_E Retroposon Retroposon
4622 chr1.32975158.32975845 (GGAGAG)n Other Simple_repeat
4623 chr1.32989068.32989527 L3b LINE LINE
4624 chr1.32992322.32992850 MIRb SINE SINE
4625 chr1.32997313.32997938 MIRb SINE SINE
4626 chr1.32997313.32997938 MIRb SINE SINE
4627 chr1.32997313.32997938 L2b LINE LINE
4628 chr1.33005616.33006180 MIRb SINE SINE
4629 chr1.33005616.33006180 MER1B DNA DNA
4630 chr1.33007188.33007749 <NA> <NA> <NA>
4631 chr1.33008429.33008821 MamRTE1 LINE LINE
4632 chr1.33008429.33008821 MIRb SINE SINE
4633 chr1.33009588.33010118 MIRb SINE SINE
4634 chr1.33011201.33011627 <NA> <NA> <NA>
4635 chr1.33030195.33030895 AluJr SINE SINE
4636 chr1.33030195.33030895 MIR SINE SINE
4637 chr1.33030195.33030895 L1ME3A LINE LINE
4638 chr1.33036052.33037174 (ACGC)n Other Simple_repeat
4639 chr1.33047815.33048377 MLT1I LTR LTR
4640 chr1.33047815.33048377 L2 LINE LINE
4641 chr1.33047815.33048377 MIRb SINE SINE
4642 chr1.33047815.33048377 AluSc SINE SINE
4643 chr1.33055088.33055868 LTR78B LTR LTR
4644 chr1.33055088.33055868 LTR78B LTR LTR
4645 chr1.33060584.33061159 MLT1F1 LTR LTR
4646 chr1.33060584.33061159 MSTC LTR LTR
4647 chr1.33080807.33081560 <NA> <NA> <NA>
4648 chr1.33086169.33086812 MIRb SINE SINE
4649 chr1.33086169.33086812 L2b LINE LINE
4650 chr1.33097306.33097498 MIR SINE SINE
4651 chr1.33099165.33099808 (CCCT)n Other Simple_repeat
4652 chr1.33126950.33127626 MER53 DNA DNA
4653 chr1.33126950.33127626 MIR1_Amn SINE SINE
4654 chr1.33137757.33138100 <NA> <NA> <NA>
4655 chr1.33140157.33140455 MIR3 SINE SINE
4656 chr1.33169133.33169895 MER3 DNA DNA
4657 chr1.33180627.33182237 G-rich Other Low_complexity
4658 chr1.33188533.33189256 ERV3-16A3_I-int LTR LTR
4659 chr1.33218794.33219181 (AC)n Other Simple_repeat
4660 chr1.33218794.33219181 MIRb SINE SINE
4661 chr1.33219537.33220451 MIRb SINE SINE
4662 chr1.33220942.33221682 MIRb SINE SINE
4663 chr1.33229146.33229451 L2a LINE LINE
4664 chr1.33229146.33229451 AluSx1 SINE SINE
4665 chr1.33248327.33248519 MIRc SINE SINE
4666 chr1.33248327.33248519 LTR85b LTR LTR
4667 chr1.33255491.33256204 (CGGCG)n Other Simple_repeat
4668 chr1.33255491.33256204 (GGC)n Other Simple_repeat
4669 chr1.33256434.33257224 (GAGCCG)n Other Simple_repeat
4670 chr1.33256434.33257224 (GT)n Other Simple_repeat
4671 chr1.33289339.33289762 L2b LINE LINE
4672 chr1.33295377.33295876 MIR1_Amn SINE SINE
4673 chr1.33298598.33299058 <NA> <NA> <NA>
4674 chr1.33306391.33307441 MIR3 SINE SINE
4675 chr1.33306391.33307441 (GCGCCAC)n Other Simple_repeat
4676 chr1.33327664.33328310 MLT1F LTR LTR
4677 chr1.33327664.33328310 MIRb SINE SINE
4678 chr1.33331816.33332030 <NA> <NA> <NA>
4679 chr1.33336257.33336443 AluSx SINE SINE
4680 chr1.33338369.33339649 <NA> <NA> <NA>
4681 chr1.33342163.33342805 <NA> <NA> <NA>
4682 chr1.33343665.33343847 <NA> <NA> <NA>
4683 chr1.33346965.33347280 <NA> <NA> <NA>
4684 chr1.33348877.33350655 MIR3 SINE SINE
4685 chr1.33348877.33350655 (CCCGG)n Other Simple_repeat
4686 chr1.33348877.33350655 MIR SINE SINE
4687 chr1.33348877.33350655 MIR SINE SINE
4688 chr1.33361570.33362058 AluSq2 SINE SINE
4689 chr1.33361570.33362058 MIRb SINE SINE
4690 chr1.33367545.33368404 <NA> <NA> <NA>
4691 chr1.33378630.33379219 <NA> <NA> <NA>
4692 chr1.33379749.33380176 (CT)n Other Simple_repeat
4693 chr1.33384148.33384688 MER5A DNA DNA
4694 chr1.33384148.33384688 L2c LINE LINE
4695 chr1.33396639.33397042 MIR SINE SINE
4696 chr1.33400275.33400554 L1ME3G LINE LINE
4697 chr1.33400275.33400554 MIR SINE SINE
4698 chr1.33430328.33431248 (GCCGCCC)n Other Simple_repeat
4699 chr1.33430328.33431248 (GCCCG)n Other Simple_repeat
4700 chr1.33433551.33434060 (GT)n Other Simple_repeat
4701 chr1.33436668.33437105 L2c LINE LINE
4702 chr1.33443230.33443642 L2b LINE LINE
4703 chr1.33443230.33443642 L2b LINE LINE
4704 chr1.33443747.33444236 MIRb SINE SINE
4705 chr1.33455746.33456404 (AG)n Other Simple_repeat
4706 chr1.33455746.33456404 MLT1G3 LTR LTR
4707 chr1.33458507.33458968 (ACAC)n Other Simple_repeat
4708 chr1.33458507.33458968 L2 LINE LINE
4709 chr1.33470421.33471031 MIRc SINE SINE
4710 chr1.33470421.33471031 (TCCTC)n Other Simple_repeat
4711 chr1.33470421.33471031 MIRb SINE SINE
4712 chr1.33472235.33472874 MIR SINE SINE
4713 chr1.33502771.33503231 THE1C LTR LTR
4714 chr1.33575314.33575865 L2 LINE LINE
4715 chr1.33585963.33586588 MIR SINE SINE
4716 chr1.33585963.33586588 (TCAC)n Other Simple_repeat
4717 chr1.33612815.33613265 AluY SINE SINE
4718 chr1.33633157.33633637 <NA> <NA> <NA>
4719 chr1.33634918.33635119 <NA> <NA> <NA>
4720 chr1.33641053.33641405 L2b LINE LINE
4721 chr1.33654397.33654695 MIRb SINE SINE
4722 chr1.33670297.33671501 L2b LINE LINE
4723 chr1.33670297.33671501 L2b LINE LINE
4724 chr1.33709793.33710438 MIR SINE SINE
4725 chr1.33709793.33710438 L2c LINE LINE
4726 chr1.33709793.33710438 L2c LINE LINE
4727 chr1.33709793.33710438 (TGAA)n Other Simple_repeat
4728 chr1.33712195.33712716 <NA> <NA> <NA>
4729 chr1.33719847.33720488 MIRb SINE SINE
4730 chr1.33719847.33720488 L2b LINE LINE
4731 chr1.33735551.33736027 MER58A DNA DNA
4732 chr1.33763188.33763801 MER5A DNA DNA
4733 chr1.33813972.33814787 L2 LINE LINE
4734 chr1.33813972.33814787 L2 LINE LINE
4735 chr1.33849270.33849621 L1ME1 LINE LINE
4736 chr1.33860796.33861070 Charlie9 DNA DNA
4737 chr1.33860796.33861070 MIR SINE SINE
4738 chr1.33893330.33893899 MIR SINE SINE
4739 chr1.33902484.33903594 MER5B DNA DNA
4740 chr1.33902484.33903594 A-rich Other Low_complexity
4741 chr1.33917972.33918932 L2c LINE LINE
4742 chr1.33917972.33918932 MIRb SINE SINE
4743 chr1.33925639.33926011 L2b LINE LINE
4744 chr1.33943777.33944546 L2c LINE LINE
4745 chr1.33943777.33944546 (AT)n Other Simple_repeat
4746 chr1.33943777.33944546 (AC)n Other Simple_repeat
4747 chr1.33943777.33944546 MER58A DNA DNA
4748 chr1.33943777.33944546 MIRb SINE SINE
4749 chr1.33971273.33971809 <NA> <NA> <NA>
4750 chr1.33973076.33973318 <NA> <NA> <NA>
4751 chr1.33974204.33974639 L2b LINE LINE
4752 chr1.33974204.33974639 MIR SINE SINE
4753 chr1.33985556.33986086 MIRb SINE SINE
4754 chr1.33985556.33986086 L2c LINE LINE
4755 chr1.33986333.33986719 (GGGAA)n Other Simple_repeat
4756 chr1.33986333.33986719 MIRb SINE SINE
4757 chr1.33997742.33997966 GA-rich Other Low_complexity
4758 chr1.34014016.34014878 L2c LINE LINE
4759 chr1.34057383.34058242 MIRb SINE SINE
4760 chr1.34066748.34067466 <NA> <NA> <NA>
4761 chr1.34108390.34108576 MIRb SINE SINE
4762 chr1.34149330.34149887 <NA> <NA> <NA>
4763 chr1.34155859.34156377 MIRc SINE SINE
4764 chr1.34162966.34164151 (CAAAA)n Other Simple_repeat
4765 chr1.34162966.34164151 (CCGCCG)n Other Simple_repeat
4766 chr1.34164841.34165300 (GCG)n Other Simple_repeat
4767 chr1.34164841.34165300 (CGCGG)n Other Simple_repeat
4768 chr1.34189034.34189378 (GT)n Other Simple_repeat
4769 chr1.34189034.34189378 (TGTGTGCA)n Other Simple_repeat
4770 chr1.34189034.34189378 (GT)n Other Simple_repeat
4771 chr1.34266105.34266724 MER5B DNA DNA
4772 chr1.34266105.34266724 MER5A DNA DNA
4773 chr1.34320207.34320513 MLT1H LTR LTR
4774 chr1.34372005.34372623 (ACATAC)n Other Simple_repeat
4775 chr1.34372005.34372623 L2a LINE LINE
4776 chr1.34378870.34379376 <NA> <NA> <NA>
4777 chr1.34419728.34420157 <NA> <NA> <NA>
4778 chr1.34460183.34460620 MIR SINE SINE
4779 chr1.34460183.34460620 MIRb SINE SINE
4780 chr1.34478651.34478968 MLT1I LTR LTR
4781 chr1.34549259.34549688 L1PREC2 LINE LINE
4782 chr1.34590146.34590612 <NA> <NA> <NA>
4783 chr1.34597729.34598296 LTR88b LTR LTR
4784 chr1.34631349.34632039 LTR104_Mam LTR LTR
4785 chr1.34631349.34632039 L2b LINE LINE
4786 chr1.34631349.34632039 LTR7B LTR LTR
4787 chr1.34637708.34638608 THE1B LTR LTR
4788 chr1.34637708.34638608 MER72 LTR LTR
4789 chr1.34637708.34638608 AluSq2 SINE SINE
4790 chr1.34637708.34638608 MER72 LTR LTR
4791 chr1.34662992.34663578 MLT2B4 LTR LTR
4792 chr1.34662992.34663578 GA-rich Other Low_complexity
4793 chr1.34681231.34681755 L2b LINE LINE
4794 chr1.34682830.34683196 AluJr SINE SINE
4795 chr1.34684230.34684532 <NA> <NA> <NA>
4796 chr1.34688196.34688847 MER5A DNA DNA
4797 chr1.34709675.34709829 <NA> <NA> <NA>
4798 chr1.34742561.34743128 L2 LINE LINE
4799 chr1.34749712.34750319 MLT1K LTR LTR
4800 chr1.34749712.34750319 LTR16C LTR LTR
4801 chr1.34762919.34764024 L2 LINE LINE
4802 chr1.34762919.34764024 L2c LINE LINE
4803 chr1.34762919.34764024 (TTTG)n Other Simple_repeat
4804 chr1.34762919.34764024 LTR16A1 LTR LTR
4805 chr1.34771070.34771378 L2 LINE LINE
4806 chr1.34776913.34777341 <NA> <NA> <NA>
4807 chr1.34777958.34778209 <NA> <NA> <NA>
4808 chr1.34781124.34781771 MIRc SINE SINE
4809 chr1.34783691.34783893 <NA> <NA> <NA>
4810 chr1.34786388.34786989 (GGCTGG)n Other Simple_repeat
4811 chr1.34787908.34788351 <NA> <NA> <NA>
4812 chr1.34804987.34805242 <NA> <NA> <NA>
4813 chr1.34806182.34806880 MLT1A1 LTR LTR
4814 chr1.34825522.34826054 MIRb SINE SINE
4815 chr1.34835696.34836160 (ACAGAG)n Other Simple_repeat
4816 chr1.34843194.34843849 L3b LINE LINE
4817 chr1.34851533.34852031 <NA> <NA> <NA>
4818 chr1.34852728.34853298 Charlie8 DNA DNA
4819 chr1.34859054.34860132 L2c LINE LINE
4820 chr1.34859054.34860132 MIRb SINE SINE
4821 chr1.34865947.34866757 G-rich Other Low_complexity
4822 chr1.34884925.34886294 G-rich Other Low_complexity
4823 chr1.34924751.34925262 <NA> <NA> <NA>
4824 chr1.34928666.34929222 (AC)n Other Simple_repeat
4825 chr1.34928666.34929222 (GCCGG)n Other Simple_repeat
4826 chr1.34929900.34930189 <NA> <NA> <NA>
4827 chr1.34930205.34930516 <NA> <NA> <NA>
4828 chr1.34975277.34975687 L2a LINE LINE
4829 chr1.34976325.34977758 MIRb SINE SINE
4830 chr1.34976325.34977758 (CAGGCG)n Other Simple_repeat
4831 chr1.34976325.34977758 (CAGGCC)n Other Simple_repeat
4832 chr1.34976325.34977758 L2a LINE LINE
4833 chr1.34984346.34985742 (CCGCT)n Other Simple_repeat
4834 chr1.34984346.34985742 MIRc SINE SINE
4835 chr1.34984346.34985742 L2a LINE LINE
4836 chr1.35031135.35032239 AluSx SINE SINE
4837 chr1.35047225.35047840 <NA> <NA> <NA>
4838 chr1.35079100.35079929 MIR SINE SINE
4839 chr1.35079100.35079929 AluSx1 SINE SINE
4840 chr1.35085349.35085865 Zaphod DNA DNA
4841 chr1.35144926.35145363 HERV3-int LTR LTR
4842 chr1.35176642.35177427 AluY SINE SINE
4843 chr1.35176642.35177427 AluSq SINE SINE
4844 chr1.35176642.35177427 AluJb SINE SINE
4845 chr1.35191753.35193497 (TGG)n Other Simple_repeat
4846 chr1.35191753.35193497 (GCG)n Other Simple_repeat
4847 chr1.35191753.35193497 (CCGCCA)n Other Simple_repeat
4848 chr1.35202034.35202605 (TTTA)n Other Simple_repeat
4849 chr1.35210242.35211084 <NA> <NA> <NA>
4850 chr1.35268411.35269288 <NA> <NA> <NA>
4851 chr1.35279138.35279553 MLT1C-int LTR LTR
4852 chr1.35287740.35288571 AluSg SINE SINE
4853 chr1.35287740.35288571 AluJo SINE SINE
4854 chr1.35287740.35288571 LTR104_Mam LTR LTR
4855 chr1.35288696.35289133 L2c LINE LINE
4856 chr1.35298364.35298967 AluJb SINE SINE
4857 chr1.35298364.35298967 LTR41C LTR LTR
4858 chr1.35298364.35298967 L1MEc LINE LINE
4859 chr1.35304889.35305271 AluSc5 SINE SINE
4860 chr1.35304889.35305271 L1MEf LINE LINE
4861 chr1.35320011.35320461 MER21C LTR LTR
4862 chr1.35320011.35320461 MER21C LTR LTR
4863 chr1.35360035.35360504 L2c LINE LINE
4864 chr1.35448519.35448754 <NA> <NA> <NA>
4865 chr1.35449427.35449668 MIRc SINE SINE
4866 chr1.35450941.35451406 GA-rich Other Low_complexity
4867 chr1.35452303.35452440 <NA> <NA> <NA>
4868 chr1.35475288.35475855 AluJr SINE SINE
4869 chr1.35475288.35475855 L2b LINE LINE
4870 chr1.35505867.35506462 MIRb SINE SINE
4871 chr1.35538314.35538786 AluSx SINE SINE
4872 chr1.35544949.35545474 L1MEc LINE LINE
4873 chr1.35556841.35558231 (GGA)n Other Simple_repeat
4874 chr1.35558362.35558896 (CTG)n Other Simple_repeat
4875 chr1.35564610.35565336 MIR SINE SINE
4876 chr1.35567939.35568221 L2 LINE LINE
4877 chr1.35568932.35569306 L2c LINE LINE
4878 chr1.35573027.35573908 MIRc SINE SINE
4879 chr1.35575683.35575936 (TGTGTC)n Other Simple_repeat
4880 chr1.35575683.35575936 GA-rich Other Low_complexity
4881 chr1.35577087.35578025 <NA> <NA> <NA>
4882 chr1.35588859.35589454 (TG)n Other Simple_repeat
4883 chr1.35590650.35591435 <NA> <NA> <NA>
4884 chr1.35640904.35642187 AluSp SINE SINE
4885 chr1.35640904.35642187 AluSp SINE SINE
4886 chr1.35650365.35650949 ERV3-16A3_I-int LTR LTR
4887 chr1.35650365.35650949 ERV3-16A3_I-int LTR LTR
4888 chr1.35650365.35650949 ERV3-16A3_I-int LTR LTR
4889 chr1.35660876.35661281 (TG)n Other Simple_repeat
4890 chr1.35660876.35661281 AluJr SINE SINE
4891 chr1.35707336.35708397 <NA> <NA> <NA>
4892 chr1.35717766.35718470 <NA> <NA> <NA>
4893 chr1.35718498.35719248 L2a LINE LINE
4894 chr1.35726654.35727443 LTR16A LTR LTR
4895 chr1.35769240.35770302 MER96B DNA DNA
4896 chr1.35807470.35809333 AluSx1 SINE SINE
4897 chr1.35807470.35809333 (GGGA)n Other Simple_repeat
4898 chr1.35807470.35809333 (CCCGCG)n Other Simple_repeat
4899 chr1.35807470.35809333 (GGC)n Other Simple_repeat
4900 chr1.35807470.35809333 (CCCCGC)n Other Simple_repeat
4901 chr1.35807470.35809333 (GCG)n Other Simple_repeat
4902 chr1.35845861.35846103 MLT1I LTR LTR
4903 chr1.35876899.35877458 AluJb SINE SINE
4904 chr1.35876899.35877458 L2b LINE LINE
4905 chr1.35882865.35884077 (CTGGCAG)n Other Simple_repeat
4906 chr1.35882865.35884077 (GCG)n Other Simple_repeat
4907 chr1.35882865.35884077 (CCCGC)n Other Simple_repeat
4908 chr1.35886769.35887131 (GT)n Other Simple_repeat
4909 chr1.35886769.35887131 L2b LINE LINE
4910 chr1.35886769.35887131 (GT)n Other Simple_repeat
4911 chr1.35893939.35894811 L2b LINE LINE
4912 chr1.35915664.35916623 MER5A DNA DNA
4913 chr1.35915664.35916623 MIR SINE SINE
4914 chr1.35915664.35916623 MIR SINE SINE
4915 chr1.35915664.35916623 AluSz SINE SINE
4916 chr1.35917653.35917949 (GAGT)n Other Simple_repeat
4917 chr1.35921707.35922095 <NA> <NA> <NA>
4918 chr1.35930303.35931932 L2 LINE LINE
4919 chr1.35930303.35931932 MIRc SINE SINE
4920 chr1.36008622.36009034 <NA> <NA> <NA>
4921 chr1.36034616.36035020 MER51A LTR LTR
4922 chr1.36034616.36035020 MIRb SINE SINE
4923 chr1.36088532.36089945 (GCGGCA)n Other Simple_repeat
4924 chr1.36088532.36089945 Tigger5b DNA DNA
4925 chr1.36088532.36089945 Tigger5b DNA DNA
4926 chr1.36088532.36089945 Tigger5b DNA DNA
4927 chr1.36088532.36089945 L2 LINE LINE
4928 chr1.36088532.36089945 L2 LINE LINE
4929 chr1.36096711.36097538 <NA> <NA> <NA>
4930 chr1.36099527.36100274 (CAG)n Other Simple_repeat
4931 chr1.36109105.36109461 MIRb SINE SINE
4932 chr1.36119372.36119883 MIRc SINE SINE
4933 chr1.36125633.36126158 L2 LINE LINE
4934 chr1.36126248.36126757 (GT)n Other Simple_repeat
4935 chr1.36133525.36133870 MIR SINE SINE
4936 chr1.36134652.36135264 <NA> <NA> <NA>
4937 chr1.36149006.36149924 MIRb SINE SINE
4938 chr1.36150637.36151190 <NA> <NA> <NA>
4939 chr1.36155516.36157431 G-rich Other Low_complexity
4940 chr1.36155516.36157431 (GCC)n Other Simple_repeat
4941 chr1.36155516.36157431 GA-rich Other Low_complexity
4942 chr1.36155516.36157431 G-rich Other Low_complexity
4943 chr1.36161784.36162474 (TG)n Other Simple_repeat
4944 chr1.36161784.36162474 (CTCTGC)n Other Simple_repeat
4945 chr1.36161784.36162474 MIRb SINE SINE
4946 chr1.36162902.36163153 L2c LINE LINE
4947 chr1.36167063.36167778 L2-1_AMi LINE LINE
4948 chr1.36167063.36167778 MIRb SINE SINE
4949 chr1.36168386.36168843 MIRb SINE SINE
4950 chr1.36168386.36168843 MIR SINE SINE
4951 chr1.36175346.36176462 <NA> <NA> <NA>
4952 chr1.36179027.36179443 G-rich Other Low_complexity
4953 chr1.36187711.36188701 AluJo SINE SINE
4954 chr1.36187711.36188701 MIRb SINE SINE
4955 chr1.36203405.36204625 MER20 DNA DNA
4956 chr1.36217612.36217938 Tigger1 DNA DNA
4957 chr1.36223784.36225304 MIRc SINE SINE
4958 chr1.36231002.36231519 <NA> <NA> <NA>
4959 chr1.36240193.36240677 MLT2B3 LTR LTR
4960 chr1.36244534.36244859 AluSc5 SINE SINE
4961 chr1.36248369.36249080 AluJr SINE SINE
4962 chr1.36248369.36249080 AluJr SINE SINE
4963 chr1.36248369.36249080 L2c LINE LINE
4964 chr1.36248369.36249080 AluSx SINE SINE
4965 chr1.36253636.36253752 AluJr SINE SINE
4966 chr1.36257216.36257653 L2a LINE LINE
4967 chr1.36266404.36266770 <NA> <NA> <NA>
4968 chr1.36272376.36272913 L3 LINE LINE
4969 chr1.36273036.36273570 L1M4 LINE LINE
4970 chr1.36275530.36275988 AluY SINE SINE
4971 chr1.36275530.36275988 AluSp SINE SINE
4972 chr1.36275530.36275988 L1M4 LINE LINE
4973 chr1.36275530.36275988 AluJo SINE SINE
4974 chr1.36279088.36279662 <NA> <NA> <NA>
4975 chr1.36285441.36285958 <NA> <NA> <NA>
4976 chr1.36290503.36291229 AluSx1 SINE SINE
4977 chr1.36290503.36291229 AluJb SINE SINE
4978 chr1.36299915.36300483 MIR1_Amn SINE SINE
4979 chr1.36300602.36300845 L2c LINE LINE
4980 chr1.36321081.36322098 (GGCCTG)n Other Simple_repeat
4981 chr1.36322994.36324178 (GGCGG)n Other Simple_repeat
4982 chr1.36322994.36324178 G-rich Other Low_complexity
4983 chr1.36322994.36324178 (GGCGG)n Other Simple_repeat
4984 chr1.36322994.36324178 MIRb SINE SINE
4985 chr1.36327445.36327700 <NA> <NA> <NA>
4986 chr1.36342380.36343455 MIRb SINE SINE
4987 chr1.36349434.36349686 MIRb SINE SINE
4988 chr1.36350726.36351927 <NA> <NA> <NA>
4989 chr1.36352227.36352923 MIRb SINE SINE
4990 chr1.36352227.36352923 L2c LINE LINE
4991 chr1.36353051.36353196 <NA> <NA> <NA>
4992 chr1.36367583.36368085 <NA> <NA> <NA>
4993 chr1.36369097.36369305 <NA> <NA> <NA>
4994 chr1.36373482.36375066 <NA> <NA> <NA>
4995 chr1.36384925.36387119 MIRb SINE SINE
4996 chr1.36384925.36387119 (CCCGCTC)n Other Simple_repeat
4997 chr1.36384925.36387119 (CCCGCAC)n Other Simple_repeat
4998 chr1.36397234.36398118 MIRc SINE SINE
4999 chr1.36397234.36398118 L2a LINE LINE
5000 chr1.36400661.36401707 LTR2752 LTR LTR
5001 chr1.36408527.36408819 MLT1N2 LTR LTR
5002 chr1.36411942.36412239 MER51A LTR LTR
5003 chr1.36420848.36421540 L2c LINE LINE
5004 chr1.36448574.36449076 L2c LINE LINE
5005 chr1.36450055.36450928 G-rich Other Low_complexity
5006 chr1.36450055.36450928 MIRb SINE SINE
5007 chr1.36458714.36459206 AluJb SINE SINE
5008 chr1.36463511.36464902 (CCCCA)n Other Simple_repeat
5009 chr1.36463511.36464902 MIRb SINE SINE
5010 chr1.36481469.36482513 MIR SINE SINE
5011 chr1.36516435.36517081 MIRb SINE SINE
5012 chr1.36524452.36524775 <NA> <NA> <NA>
5013 chr1.36528509.36528981 MIR SINE SINE
5014 chr1.36542879.36543531 MIRb SINE SINE
5015 chr1.36542879.36543531 L2 LINE LINE
5016 chr1.36553622.36554365 L2a LINE LINE
5017 chr1.36553622.36554365 MIR3 SINE SINE
5018 chr1.36575910.36576575 <NA> <NA> <NA>
5019 chr1.36603587.36603840 <NA> <NA> <NA>
5020 chr1.36609173.36609687 <NA> <NA> <NA>
5021 chr1.36613426.36614137 (GACACA)n Other Simple_repeat
5022 chr1.36637951.36638613 <NA> <NA> <NA>
5023 chr1.36650405.36650800 MLT1D LTR LTR
5024 chr1.36703659.36704194 <NA> <NA> <NA>
5025 chr1.36752990.36753391 LTR104_Mam LTR LTR
5026 chr1.36784414.36784798 MLT1I LTR LTR
5027 chr1.36814626.36815019 (ACAT)n Other Simple_repeat
5028 chr1.36816381.36816661 <NA> <NA> <NA>
5029 chr1.36865973.36866600 AluJr SINE SINE
5030 chr1.36865973.36866600 MIRb SINE SINE
5031 chr1.36865973.36866600 MIR SINE SINE
5032 chr1.36924190.36924817 <NA> <NA> <NA>
5033 chr1.36960314.36961023 L2a LINE LINE
5034 chr1.36966142.36966711 <NA> <NA> <NA>
5035 chr1.36984758.36984974 <NA> <NA> <NA>
5036 chr1.37006214.37006640 <NA> <NA> <NA>
5037 chr1.37032803.37033736 (GCCCG)n Other Simple_repeat
5038 chr1.37034341.37035009 (CTCCCCC)n Other Simple_repeat
5039 chr1.37034341.37035009 (CACTCA)n Other Simple_repeat
5040 chr1.37034341.37035009 (GCGAGAGC)n Other Simple_repeat
5041 chr1.37038300.37038615 <NA> <NA> <NA>
5042 chr1.37052206.37052503 <NA> <NA> <NA>
5043 chr1.37071768.37072299 L2b LINE LINE
5044 chr1.37071768.37072299 L2b LINE LINE
5045 chr1.37073861.37074148 <NA> <NA> <NA>
5046 chr1.37108813.37109167 <NA> <NA> <NA>
5047 chr1.37110494.37111117 LTR89 LTR LTR
5048 chr1.37110494.37111117 L2c LINE LINE
5049 chr1.37118893.37119272 GA-rich Other Low_complexity
5050 chr1.37153411.37153682 <NA> <NA> <NA>
5051 chr1.37174818.37175281 LTR33 LTR LTR
5052 chr1.37255342.37255873 (TGT)n Other Simple_repeat
5053 chr1.37318918.37319639 (GTGTGT)n Other Simple_repeat
5054 chr1.37318918.37319639 (TG)n Other Simple_repeat
5055 chr1.37362500.37363284 L1MD3 LINE LINE
5056 chr1.37362500.37363284 L2b LINE LINE
5057 chr1.37395079.37395573 MLT1O LTR LTR
5058 chr1.37410708.37411179 <NA> <NA> <NA>
5059 chr1.37420435.37420844 AluJb SINE SINE
5060 chr1.37420435.37420844 L2c LINE LINE
5061 chr1.37420435.37420844 MER2 DNA DNA
5062 chr1.37425280.37425694 MER63A DNA DNA
5063 chr1.37425280.37425694 (CACTCCA)n Other Simple_repeat
5064 chr1.37425280.37425694 AluSx SINE SINE
5065 chr1.37434220.37434927 MER5B DNA DNA
5066 chr1.37434220.37434927 L2c LINE LINE
5067 chr1.37454697.37455400 MIR SINE SINE
5068 chr1.37471435.37472154 L2c LINE LINE
5069 chr1.37474273.37475021 GA-rich Other Low_complexity
5070 chr1.37476591.37477691 (CCAGCCC)n Other Simple_repeat
5071 chr1.37479690.37480114 <NA> <NA> <NA>
5072 chr1.37487136.37487629 <NA> <NA> <NA>
5073 chr1.37498982.37499610 AluJb SINE SINE
5074 chr1.37498982.37499610 L2a LINE LINE
5075 chr1.37513835.37515304 Charlie4z DNA DNA
5076 chr1.37513835.37515304 (TCCCCC)n Other Simple_repeat
5077 chr1.37513835.37515304 (CCGCTC)n Other Simple_repeat
5078 chr1.37513835.37515304 (CGCCG)n Other Simple_repeat
5079 chr1.37513835.37515304 L2 LINE LINE
5080 chr1.37534222.37534878 FLAM_A SINE SINE
5081 chr1.37553769.37554451 AluSz6 SINE SINE
5082 chr1.37556675.37557211 MIRc SINE SINE
5083 chr1.37561930.37562062 <NA> <NA> <NA>
5084 chr1.37576522.37576874 AluSx SINE SINE
5085 chr1.37595394.37596487 L2a LINE LINE
5086 chr1.37595394.37596487 L2a LINE LINE
5087 chr1.37603074.37603587 MER58B DNA DNA
5088 chr1.37603074.37603587 LTR88a LTR LTR
5089 chr1.37634296.37635081 <NA> <NA> <NA>
5090 chr1.37663540.37664167 <NA> <NA> <NA>
5091 chr1.37682326.37682656 <NA> <NA> <NA>
5092 chr1.37689795.37690764 AluSx1 SINE SINE
5093 chr1.37691492.37692875 <NA> <NA> <NA>
5094 chr1.37730129.37730489 LTR85a LTR LTR
5095 chr1.37741161.37741594 MIRb SINE SINE
5096 chr1.37741161.37741594 L1M6 LINE LINE
5097 chr1.37752868.37753368 (GGCGG)n Other Simple_repeat
5098 chr1.37756367.37756737 L3 LINE LINE
5099 chr1.37764253.37764718 (CTCCAC)n Other Simple_repeat
5100 chr1.37793803.37794339 <NA> <NA> <NA>
5101 chr1.37795359.37795607 <NA> <NA> <NA>
5102 chr1.37807348.37809265 L2 LINE LINE
5103 chr1.37807348.37809265 L2b LINE LINE
5104 chr1.37807348.37809265 MIR1_Amn SINE SINE
5105 chr1.37807348.37809265 G-rich Other Low_complexity
5106 chr1.37807348.37809265 (TGGGG)n Other Simple_repeat
5107 chr1.37811188.37811347 <NA> <NA> <NA>
5108 chr1.37858974.37860470 <NA> <NA> <NA>
5109 chr1.37875893.37876156 AluJb SINE SINE
5110 chr1.37884369.37884683 (TTTCC)n Other Simple_repeat
5111 chr1.37884369.37884683 AluJo SINE SINE
5112 chr1.37884369.37884683 AluSg SINE SINE
5113 chr1.37915144.37915645 MER46C DNA DNA
5114 chr1.37915144.37915645 L1ME4a LINE LINE
5115 chr1.37930719.37930961 <NA> <NA> <NA>
5116 chr1.37931148.37932171 MIR3 SINE SINE
5117 chr1.37946051.37946447 MIRb SINE SINE
5118 chr1.37946609.37947240 (CCTGC)n Other Simple_repeat
5119 chr1.37954294.37954605 <NA> <NA> <NA>
5120 chr1.37958554.37959215 MER105 DNA DNA
5121 chr1.37958554.37959215 Charlie15a DNA DNA
5122 chr1.37958554.37959215 AluJb SINE SINE
5123 chr1.37974996.37975624 L2c LINE LINE
5124 chr1.37974996.37975624 AluSz6 SINE SINE
5125 chr1.37989364.37990340 MIR3 SINE SINE
5126 chr1.37999250.38000185 OldhAT1 DNA DNA
5127 chr1.38004532.38005014 (GTCTCT)n Other Simple_repeat
5128 chr1.38004532.38005014 Arthur1B DNA DNA
5129 chr1.38005173.38006465 (CCCCT)n Other Simple_repeat
5130 chr1.38005173.38006465 G-rich Other Low_complexity
5131 chr1.38005173.38006465 GA-rich Other Low_complexity
5132 chr1.38012294.38013280 AluSg SINE SINE
5133 chr1.38020417.38020978 AluSg7 SINE SINE
5134 chr1.38022942.38023427 MER105 DNA DNA
5135 chr1.38026714.38027053 AluSx1 SINE SINE
5136 chr1.38029108.38030723 (GAGCGG)n Other Simple_repeat
5137 chr1.38029108.38030723 UCON80_AMi Other Unknown
5138 chr1.38040122.38040849 (GT)n Other Simple_repeat
5139 chr1.38040122.38040849 (AG)n Other Simple_repeat
5140 chr1.38045550.38048607 (GCC)n Other Simple_repeat
5141 chr1.38045550.38048607 (CCG)n Other Simple_repeat
5142 chr1.38045550.38048607 (CCG)n Other Simple_repeat
5143 chr1.38045550.38048607 (CCG)n Other Simple_repeat
5144 chr1.38055221.38055694 L2b LINE LINE
5145 chr1.38064155.38064858 (AGCTGG)n Other Simple_repeat
5146 chr1.38064155.38064858 LTR16 LTR LTR
5147 chr1.38068283.38068601 (GGGA)n Other Simple_repeat
5148 chr1.38071830.38072221 MIRb SINE SINE
5149 chr1.38074008.38074387 GA-rich Other Low_complexity
5150 chr1.38076167.38076474 MIRb SINE SINE
5151 chr1.38088339.38088807 L2a LINE LINE
5152 chr1.38117644.38118279 <NA> <NA> <NA>
5153 chr1.38123353.38123643 MIR3 SINE SINE
5154 chr1.38129936.38130319 LTR33 LTR LTR
5155 chr1.38135628.38135873 <NA> <NA> <NA>
5156 chr1.38138355.38139081 <NA> <NA> <NA>
5157 chr1.38207158.38207708 (GGCA)n Other Simple_repeat
5158 chr1.38217303.38217840 <NA> <NA> <NA>
5159 chr1.38221022.38221618 L1ME4a LINE LINE
5160 chr1.38221022.38221618 (T)n Other Simple_repeat
5161 chr1.38261333.38261995 L2b LINE LINE
5162 chr1.38291972.38292755 MIR3 SINE SINE
5163 chr1.38291972.38292755 L2b LINE LINE
5164 chr1.38308842.38309204 LTR16D LTR LTR
5165 chr1.38308842.38309204 LTR16D LTR LTR
5166 chr1.38444870.38445581 <NA> <NA> <NA>
5167 chr1.38451496.38452039 (T)n Other Simple_repeat
5168 chr1.38476157.38477004 (CCGCGC)n Other Simple_repeat
5169 chr1.38489900.38490098 LTR79 LTR LTR
5170 chr1.38507588.38508052 AluSq2 SINE SINE
5171 chr1.38507588.38508052 (TAA)n Other Simple_repeat
5172 chr1.38507588.38508052 MIR3 SINE SINE
5173 chr1.38578255.38578946 G-rich Other Low_complexity
5174 chr1.38578255.38578946 MIRc SINE SINE
5175 chr1.38586934.38587606 MamGyp-int LTR LTR
5176 chr1.38586934.38587606 AluJb SINE SINE
5177 chr1.38608199.38608637 MER20 DNA DNA
5178 chr1.38624291.38624837 MIRb SINE SINE
5179 chr1.38690913.38691263 MER44B DNA DNA
5180 chr1.38690913.38691263 L1ME2 LINE LINE
5181 chr1.38728251.38728786 MIRc SINE SINE
5182 chr1.38740446.38741722 L2b LINE LINE
5183 chr1.38740446.38741722 MIRb SINE SINE
5184 chr1.38789845.38790291 <NA> <NA> <NA>
5185 chr1.38804063.38804521 <NA> <NA> <NA>
5186 chr1.38817601.38818947 MIRb SINE SINE
5187 chr1.38831997.38832333 MLT1J2 LTR LTR
5188 chr1.38835136.38835548 <NA> <NA> <NA>
5189 chr1.38858890.38860564 (GCCTCC)n Other Simple_repeat
5190 chr1.38858890.38860564 (GCC)n Other Simple_repeat
5191 chr1.38858890.38860564 (GCC)n Other Simple_repeat
5192 chr1.38858890.38860564 (CAGGC)n Other Simple_repeat
5193 chr1.38858890.38860564 (GCC)n Other Simple_repeat
5194 chr1.38872731.38873877 <NA> <NA> <NA>
5195 chr1.38875825.38876071 <NA> <NA> <NA>
5196 chr1.38891855.38892194 <NA> <NA> <NA>
5197 chr1.38899736.38900050 L1MEc LINE LINE
5198 chr1.38915324.38915966 AluSz SINE SINE
5199 chr1.38915324.38915966 MIRc SINE SINE
5200 chr1.38920902.38921382 AluY SINE SINE
5201 chr1.38920902.38921382 L1MB5 LINE LINE
5202 chr1.38920902.38921382 MIR SINE SINE
5203 chr1.38920902.38921382 AluSz SINE SINE
5204 chr1.38923558.38923925 <NA> <NA> <NA>
5205 chr1.38931404.38932119 AluY SINE SINE
5206 chr1.38931404.38932119 (A)n Other Simple_repeat
5207 chr1.38931404.38932119 MLT1H1 LTR LTR
5208 chr1.38943658.38944149 AluJo SINE SINE
5209 chr1.38943658.38944149 L2b LINE LINE
5210 chr1.38943658.38944149 AluSz SINE SINE
5211 chr1.38958923.38959302 MSTD LTR LTR
5212 chr1.38964170.38964529 <NA> <NA> <NA>
5213 chr1.38986777.38987009 L4_B_Mam LINE LINE
5214 chr1.38990559.38992645 Charlie4z DNA DNA
5215 chr1.38990559.38992645 G-rich Other Low_complexity
5216 chr1.39002694.39003667 AluY SINE SINE
5217 chr1.39002694.39003667 MIR SINE SINE
5218 chr1.39014196.39014469 (AGCAG)n Other Simple_repeat
5219 chr1.39014196.39014469 LTR52 LTR LTR
5220 chr1.39025774.39027153 (CT)n Other Simple_repeat
5221 chr1.39025774.39027153 AluJb SINE SINE
5222 chr1.39025774.39027153 L2 LINE LINE
5223 chr1.39025774.39027153 AluSp SINE SINE
5224 chr1.39047118.39048265 MER102c DNA DNA
5225 chr1.39047118.39048265 AluJb SINE SINE
5226 chr1.39060507.39061192 AluSz6 SINE SINE
5227 chr1.39060507.39061192 AluYm1 SINE SINE
5228 chr1.39060507.39061192 L1MD2 LINE LINE
5229 chr1.39060507.39061192 AluSz SINE SINE
5230 chr1.39076152.39076913 AluSx SINE SINE
5231 chr1.39076152.39076913 L2c LINE LINE
5232 chr1.39080746.39081146 <NA> <NA> <NA>
5233 chr1.39081357.39082133 (CCGCT)n Other Simple_repeat
5234 chr1.39081357.39082133 (CGC)n Other Simple_repeat
5235 chr1.39086465.39087578 <NA> <NA> <NA>
5236 chr1.39092251.39092655 MIRb SINE SINE
5237 chr1.39092251.39092655 MER91C DNA DNA
5238 chr1.39092251.39092655 L1MC5 LINE LINE
5239 chr1.39098369.39099149 MIRb SINE SINE
5240 chr1.39098369.39099149 MIRc SINE SINE
5241 chr1.39100312.39100556 <NA> <NA> <NA>
5242 chr1.39104562.39106665 (GCC)n Other Simple_repeat
5243 chr1.39104562.39106665 (GGA)n Other Simple_repeat
5244 chr1.39110762.39111240 AluJb SINE SINE
5245 chr1.39115283.39115714 L2c LINE LINE
5246 chr1.39117126.39117720 (GT)n Other Simple_repeat
5247 chr1.39118075.39118570 <NA> <NA> <NA>
5248 chr1.39129582.39129896 <NA> <NA> <NA>
5249 chr1.39132412.39133370 <NA> <NA> <NA>
5250 chr1.39135788.39136146 (AC)n Other Simple_repeat
5251 chr1.39141082.39141444 MIR SINE SINE
5252 chr1.39141082.39141444 MER5A DNA DNA
5253 chr1.39141082.39141444 MIR SINE SINE
5254 chr1.39141956.39143020 <NA> <NA> <NA>
5255 chr1.39145453.39145831 L2c LINE LINE
5256 chr1.39149079.39149294 AluSz SINE SINE
5257 chr1.39154483.39155216 <NA> <NA> <NA>
5258 chr1.39159192.39159507 <NA> <NA> <NA>
5259 chr1.39164927.39165694 <NA> <NA> <NA>
5260 chr1.39167661.39168431 AluSp SINE SINE
5261 chr1.39167661.39168431 AluSx1 SINE SINE
5262 chr1.39167661.39168431 L2c LINE LINE
5263 chr1.39167661.39168431 MIRb SINE SINE
5264 chr1.39183707.39184899 <NA> <NA> <NA>
5265 chr1.39185687.39186084 <NA> <NA> <NA>
5266 chr1.39189581.39189930 (CTTTCT)n Other Simple_repeat
5267 chr1.39191548.39192720 AluSz6 SINE SINE
5268 chr1.39204435.39205967 (CCTCTTC)n Other Simple_repeat
5269 chr1.39213575.39215255 AluSx SINE SINE
5270 chr1.39215466.39215842 <NA> <NA> <NA>
5271 chr1.39224588.39225261 L2b LINE LINE
5272 chr1.39224588.39225261 AluJr4 SINE SINE
5273 chr1.39224588.39225261 AluYb8 SINE SINE
5274 chr1.39230444.39231166 <NA> <NA> <NA>
5275 chr1.39234994.39235936 SVA_D Retroposon Retroposon
5276 chr1.39234994.39235936 AluJr SINE SINE
5277 chr1.39238165.39238841 <NA> <NA> <NA>
5278 chr1.39254531.39254884 A-rich Other Low_complexity
5279 chr1.39255132.39255632 MIR3 SINE SINE
5280 chr1.39255132.39255632 L2c LINE LINE
5281 chr1.39256219.39256752 MIR1_Amn SINE SINE
5282 chr1.39256219.39256752 L2 LINE LINE
5283 chr1.39256219.39256752 MER81 DNA DNA
5284 chr1.39258379.39259189 <NA> <NA> <NA>
5285 chr1.39268934.39269685 <NA> <NA> <NA>
5286 chr1.39272016.39272628 <NA> <NA> <NA>
5287 chr1.39276158.39276427 AluJo SINE SINE
5288 chr1.39282661.39283154 L2a LINE LINE
5289 chr1.39293374.39293769 <NA> <NA> <NA>
5290 chr1.39295742.39296329 (GT)n Other Simple_repeat
5291 chr1.39295742.39296329 MLT1H LTR LTR
5292 chr1.39317939.39318632 <NA> <NA> <NA>
5293 chr1.39332216.39332587 <NA> <NA> <NA>
5294 chr1.39339933.39340403 MIRc SINE SINE
5295 chr1.39344332.39344784 AluSx1 SINE SINE
5296 chr1.39344332.39344784 MER50 LTR LTR
5297 chr1.39346987.39347412 <NA> <NA> <NA>
5298 chr1.39360820.39361270 <NA> <NA> <NA>
5299 chr1.39378402.39378635 <NA> <NA> <NA>
5300 chr1.39381732.39382101 AluJr SINE SINE
5301 chr1.39385308.39385922 AluSz6 SINE SINE
5302 chr1.39387522.39387776 <NA> <NA> <NA>
5303 chr1.39391679.39392569 <NA> <NA> <NA>
5304 chr1.39395458.39395833 <NA> <NA> <NA>
5305 chr1.39398368.39399145 AluJb SINE SINE
5306 chr1.39398368.39399145 MER20 DNA DNA
5307 chr1.39408384.39409830 G-rich Other Low_complexity
5308 chr1.39408384.39409830 (TCGTCC)n Other Simple_repeat
5309 chr1.39408384.39409830 (CCCCGG)n Other Simple_repeat
5310 chr1.39408384.39409830 (TCGTCC)n Other Simple_repeat
5311 chr1.39408384.39409830 (GGCGC)n Other Simple_repeat
5312 chr1.39408384.39409830 (AGCC)n Other Simple_repeat
5313 chr1.39410872.39411379 <NA> <NA> <NA>
5314 chr1.39412645.39413229 <NA> <NA> <NA>
5315 chr1.39427463.39427620 <NA> <NA> <NA>
5316 chr1.39428033.39428281 <NA> <NA> <NA>
5317 chr1.39431855.39432241 AluJr SINE SINE
5318 chr1.39434922.39435392 <NA> <NA> <NA>
5319 chr1.39449520.39449932 AluY SINE SINE
5320 chr1.39449520.39449932 AluJr SINE SINE
5321 chr1.39449520.39449932 AluSx4 SINE SINE
5322 chr1.39462143.39462580 AluJb SINE SINE
5323 chr1.39471084.39471597 <NA> <NA> <NA>
5324 chr1.39474840.39475108 L2c LINE LINE
5325 chr1.39475372.39476020 AluJb SINE SINE
5326 chr1.39475372.39476020 L2c LINE LINE
5327 chr1.39477460.39477867 AluJb SINE SINE
5328 chr1.39477460.39477867 L2c LINE LINE
5329 chr1.39477460.39477867 MIRc SINE SINE
5330 chr1.39481365.39481799 <NA> <NA> <NA>
5331 chr1.39489435.39489952 <NA> <NA> <NA>
5332 chr1.39490584.39492165 MIR SINE SINE
5333 chr1.39490584.39492165 L2a LINE LINE
5334 chr1.39490584.39492165 (CGGCCC)n Other Simple_repeat
5335 chr1.39490584.39492165 (AGCGTC)n Other Simple_repeat
5336 chr1.39490584.39492165 (CCCGCCT)n Other Simple_repeat
5337 chr1.39499423.39500100 L2a LINE LINE
5338 chr1.39507277.39507586 <NA> <NA> <NA>
5339 chr1.39508984.39509671 <NA> <NA> <NA>
5340 chr1.39525647.39526381 AluSx1 SINE SINE
5341 chr1.39534827.39535091 AluJr SINE SINE
5342 chr1.39534827.39535091 L1MB8 LINE LINE
5343 chr1.39534827.39535091 AluJr SINE SINE
5344 chr1.39535802.39536060 AluY SINE SINE
5345 chr1.39535802.39536060 L1MB8 LINE LINE
5346 chr1.39535802.39536060 AluSz6 SINE SINE
5347 chr1.39538949.39539505 L2a LINE LINE
5348 chr1.39538949.39539505 L2-1_AMi LINE LINE
5349 chr1.39538949.39539505 MER20B DNA DNA
5350 chr1.39540287.39540957 L2a LINE LINE
5351 chr1.39540287.39540957 L2a LINE LINE
5352 chr1.39559241.39559841 AluY SINE SINE
5353 chr1.39564351.39564616 <NA> <NA> <NA>
5354 chr1.39566371.39567036 <NA> <NA> <NA>
5355 chr1.39571113.39571380 <NA> <NA> <NA>
5356 chr1.39574145.39577047 MIR SINE SINE
5357 chr1.39574145.39577047 G-rich Other Low_complexity
5358 chr1.39574145.39577047 (GGAC)n Other Simple_repeat
5359 chr1.39574145.39577047 (TTTTTC)n Other Simple_repeat
5360 chr1.39574145.39577047 (GCG)n Other Simple_repeat
5361 chr1.39574145.39577047 (CGGCG)n Other Simple_repeat
5362 chr1.39574145.39577047 MER20B DNA DNA
5363 chr1.39605951.39606580 MLT2B4 LTR LTR
5364 chr1.39605951.39606580 AluYa5 SINE SINE
5365 chr1.39609502.39610409 MLT2C2 LTR LTR
5366 chr1.39609502.39610409 L2a LINE LINE
5367 chr1.39617532.39618131 L2a LINE LINE
5368 chr1.39617532.39618131 MIRb SINE SINE
5369 chr1.39625269.39626037 <NA> <NA> <NA>
5370 chr1.39632760.39633364 (CCTCGCC)n Other Simple_repeat
5371 chr1.39632760.39633364 G-rich Other Low_complexity
5372 chr1.39632760.39633364 (GCCCGCC)n Other Simple_repeat
5373 chr1.39639313.39640208 (CCCGG)n Other Simple_repeat
5374 chr1.39646316.39647141 (CCT)n Other Simple_repeat
5375 chr1.39653311.39654096 MER117 DNA DNA
5376 chr1.39657990.39658303 <NA> <NA> <NA>
5377 chr1.39671518.39673060 (GAGCCCA)n Other Simple_repeat
5378 chr1.39671518.39673060 (GCT)n Other Simple_repeat
5379 chr1.39691181.39691740 G-rich Other Low_complexity
5380 chr1.39695169.39695332 LTR89 LTR LTR
5381 chr1.39698895.39699137 LTR33B LTR LTR
5382 chr1.39701125.39702256 LTR46 LTR LTR
5383 chr1.39701125.39702256 (CA)n Other Simple_repeat
5384 chr1.39701125.39702256 MLT1O LTR LTR
5385 chr1.39701125.39702256 MIRb SINE SINE
5386 chr1.39720091.39720586 MIR SINE SINE
5387 chr1.39720091.39720586 AluJo SINE SINE
5388 chr1.39733095.39733482 <NA> <NA> <NA>
5389 chr1.39738611.39739577 MER58B DNA DNA
5390 chr1.39761612.39762059 L2a LINE LINE
5391 chr1.39788609.39789787 (CGGCGGG)n Other Simple_repeat
5392 chr1.39788609.39789787 G-rich Other Low_complexity
5393 chr1.39788609.39789787 G-rich Other Low_complexity
5394 chr1.39788609.39789787 L2a LINE LINE
5395 chr1.39788609.39789787 MIR SINE SINE
5396 chr1.39799108.39799578 MIRb SINE SINE
5397 chr1.39799693.39800206 MIR3 SINE SINE
5398 chr1.39799693.39800206 MIR SINE SINE
5399 chr1.39816067.39817136 MIRc SINE SINE
5400 chr1.39816067.39817136 MIR SINE SINE
5401 chr1.39816067.39817136 MIR3 SINE SINE
5402 chr1.39832303.39832720 AluJr SINE SINE
5403 chr1.39845573.39846543 MIRb SINE SINE
5404 chr1.39882698.39883815 MIRb SINE SINE
5405 chr1.39882698.39883815 MIRb SINE SINE
5406 chr1.39882698.39883815 AluSx1 SINE SINE
5407 chr1.39892692.39893576 MIRb SINE SINE
5408 chr1.39895148.39895396 MIRc SINE SINE
5409 chr1.39899074.39899251 <NA> <NA> <NA>
5410 chr1.39900789.39902628 (CGTAGT)n Other Simple_repeat
5411 chr1.39900789.39902628 G-rich Other Low_complexity
5412 chr1.39900789.39902628 MIRb SINE SINE
5413 chr1.39919412.39920120 MER41A LTR LTR
5414 chr1.39919412.39920120 MER63B DNA DNA
5415 chr1.39919412.39920120 AluJo SINE SINE
5416 chr1.39952246.39953047 THE1D LTR LTR
5417 chr1.39952246.39953047 AluJo SINE SINE
5418 chr1.39952246.39953047 MIRb SINE SINE
5419 chr1.39952246.39953047 MIRb SINE SINE
5420 chr1.39952246.39953047 L3 LINE LINE
5421 chr1.39952246.39953047 MIRb SINE SINE
5422 chr1.39954917.39955890 <NA> <NA> <NA>
5423 chr1.39969198.39969570 <NA> <NA> <NA>
5424 chr1.39970122.39970588 AluJb SINE SINE
5425 chr1.39970122.39970588 MIRb SINE SINE
5426 chr1.39971239.39971529 MIR SINE SINE
5427 chr1.39973441.39974066 L2a LINE LINE
5428 chr1.39973441.39974066 AluJo SINE SINE
5429 chr1.39976774.39977477 LTR10D LTR LTR
5430 chr1.39976774.39977477 MER3 DNA DNA
5431 chr1.39976774.39977477 L2b LINE LINE
5432 chr1.39981874.39982408 AluJo SINE SINE
5433 chr1.39981874.39982408 (TTCC)n Other Simple_repeat
5434 chr1.39981874.39982408 L3 LINE LINE
5435 chr1.40015063.40015494 MLT1J1 LTR LTR
5436 chr1.40032387.40032712 <NA> <NA> <NA>
5437 chr1.40036718.40036868 <NA> <NA> <NA>
5438 chr1.40039452.40041179 MIRb SINE SINE
5439 chr1.40049866.40050143 L2 LINE LINE
5440 chr1.40049866.40050143 CR1-3_Croc LINE LINE
5441 chr1.40049866.40050143 L3 LINE LINE
5442 chr1.40054224.40054708 AluSx SINE SINE
5443 chr1.40054224.40054708 AluSz6 SINE SINE
5444 chr1.40054932.40055141 AluSz6 SINE SINE
5445 chr1.40054932.40055141 L2c LINE LINE
5446 chr1.40057286.40057751 (TTTCT)n Other Simple_repeat
5447 chr1.40058689.40059046 AluSz SINE SINE
5448 chr1.40058689.40059046 MIRc SINE SINE
5449 chr1.40059342.40060115 MIR3 SINE SINE
5450 chr1.40064641.40065314 AluJb SINE SINE
5451 chr1.40066909.40067486 L2 LINE LINE
5452 chr1.40076749.40077189 L2c LINE LINE
5453 chr1.40078431.40078953 AluSx1 SINE SINE
5454 chr1.40078431.40078953 L1PA17 LINE LINE
5455 chr1.40084778.40085254 LTR13 LTR LTR
5456 chr1.40096786.40097863 MIR SINE SINE
5457 chr1.40143751.40144385 MIRb SINE SINE
5458 chr1.40161098.40162162 L2b LINE LINE
5459 chr1.40161098.40162162 G-rich Other Low_complexity
5460 chr1.40186478.40186883 L2c LINE LINE
5461 chr1.40187374.40188246 <NA> <NA> <NA>
5462 chr1.40241673.40242453 AluSg7 SINE SINE
5463 chr1.40248486.40248791 <NA> <NA> <NA>
5464 chr1.40257384.40258620 Charlie2b DNA DNA
5465 chr1.40264240.40264808 AluSx SINE SINE
5466 chr1.40264240.40264808 MIRb SINE SINE
5467 chr1.40264240.40264808 MIRc SINE SINE
5468 chr1.40264240.40264808 AluJb SINE SINE
5469 chr1.40267758.40268211 MLT1J2 LTR LTR
5470 chr1.40305414.40305843 MIR3 SINE SINE
5471 chr1.40309654.40309904 (CA)n Other Simple_repeat
5472 chr1.40313605.40313945 <NA> <NA> <NA>
5473 chr1.40315119.40317206 GA-rich Other Low_complexity
5474 chr1.40315119.40317206 MIRb SINE SINE
5475 chr1.40338439.40339200 AluSx SINE SINE
5476 chr1.40338439.40339200 MIRb SINE SINE
5477 chr1.40362740.40362970 HAL1 LINE LINE
5478 chr1.40373426.40374945 MIR SINE SINE
5479 chr1.40373426.40374945 (CTTC)n Other Simple_repeat
5480 chr1.40373426.40374945 G-rich Other Low_complexity
5481 chr1.40373426.40374945 (GT)n Other Simple_repeat
5482 chr1.40373426.40374945 GA-rich Other Low_complexity
5483 chr1.40392198.40392658 <NA> <NA> <NA>
5484 chr1.40410574.40410952 CR1_Mam LINE LINE
5485 chr1.40435463.40436154 AluSq2 SINE SINE
5486 chr1.40435463.40436154 MLT1G3 LTR LTR
5487 chr1.40435463.40436154 ERVL-B4-int LTR LTR
5488 chr1.40438364.40438794 LTR16C LTR LTR
5489 chr1.40449812.40451290 MIRc SINE SINE
5490 chr1.40477003.40478060 L2a LINE LINE
5491 chr1.40477003.40478060 (TGAA)n Other Simple_repeat
5492 chr1.40508397.40509571 <NA> <NA> <NA>
5493 chr1.40531245.40532162 L2-3_Crp LINE LINE
5494 chr1.40583584.40583715 <NA> <NA> <NA>
5495 chr1.40585220.40585971 AluSx SINE SINE
5496 chr1.40585220.40585971 MER5A DNA DNA
5497 chr1.40585220.40585971 AluSx1 SINE SINE
5498 chr1.40592289.40592601 MER66C LTR LTR
5499 chr1.40612203.40612885 MER2 DNA DNA
5500 chr1.40612203.40612885 L1ME2 LINE LINE
5501 chr1.40612203.40612885 LTR41B LTR LTR
5502 chr1.40612203.40612885 LTR41B LTR LTR
5503 chr1.40625119.40625509 <NA> <NA> <NA>
5504 chr1.40626098.40626554 (AC)n Other Simple_repeat
5505 chr1.40630641.40630975 <NA> <NA> <NA>
5506 chr1.40633822.40634469 MIRb SINE SINE
5507 chr1.40633822.40634469 MIR SINE SINE
5508 chr1.40638516.40638691 <NA> <NA> <NA>
5509 chr1.40651483.40651787 MLT1C LTR LTR
5510 chr1.40651483.40651787 L2b LINE LINE
5511 chr1.40658976.40659835 L2c LINE LINE
5512 chr1.40658976.40659835 L2c LINE LINE
5513 chr1.40662930.40663124 MIRb SINE SINE
5514 chr1.40665282.40666238 (GCTCC)n Other Simple_repeat
5515 chr1.40665282.40666238 MIR1_Amn SINE SINE
5516 chr1.40668817.40669121 <NA> <NA> <NA>
5517 chr1.40691274.40692772 <NA> <NA> <NA>
5518 chr1.40703407.40703705 AluJb SINE SINE
5519 chr1.40703407.40703705 MER102c DNA DNA
5520 chr1.40708849.40710068 <NA> <NA> <NA>
5521 chr1.40710976.40712093 MIRc SINE SINE
5522 chr1.40727754.40728162 AluSg SINE SINE
5523 chr1.40727754.40728162 Tigger1 DNA DNA
5524 chr1.40727754.40728162 AluSx SINE SINE
5525 chr1.40732623.40732957 <NA> <NA> <NA>
5526 chr1.40732982.40733382 L2c LINE LINE
5527 chr1.40732982.40733382 AluJb SINE SINE
5528 chr1.40736089.40736550 <NA> <NA> <NA>
5529 chr1.40742620.40743183 MIR SINE SINE
5530 chr1.40742620.40743183 OldhAT1 DNA DNA
5531 chr1.40755126.40755374 <NA> <NA> <NA>
5532 chr1.40758385.40759054 MIR3 SINE SINE
5533 chr1.40758385.40759054 L2b LINE LINE
5534 chr1.40761044.40761379 <NA> <NA> <NA>
5535 chr1.40768386.40768894 <NA> <NA> <NA>
5536 chr1.40774034.40775051 MIRc SINE SINE
5537 chr1.40774034.40775051 L2c LINE LINE
5538 chr1.40774034.40775051 L2a LINE LINE
5539 chr1.40782518.40783880 (CCCT)n Other Simple_repeat
5540 chr1.40782518.40783880 (CGCT)n Other Simple_repeat
5541 chr1.40782518.40783880 (GGCGG)n Other Simple_repeat
5542 chr1.40790400.40790783 MIRb SINE SINE
5543 chr1.40790400.40790783 L2b LINE LINE
5544 chr1.40802218.40802659 <NA> <NA> <NA>
5545 chr1.40806802.40807620 MER91A DNA DNA
5546 chr1.40806802.40807620 MIR3 SINE SINE
5547 chr1.40818464.40818919 <NA> <NA> <NA>
5548 chr1.40824542.40825312 MIRb SINE SINE
5549 chr1.40830272.40830746 MER91C DNA DNA
5550 chr1.40838272.40838852 <NA> <NA> <NA>
5551 chr1.40839029.40839589 <NA> <NA> <NA>
5552 chr1.40848476.40848926 AluJr SINE SINE
5553 chr1.40849809.40850418 MIRc SINE SINE
5554 chr1.40849809.40850418 Tigger15a DNA DNA
5555 chr1.40849809.40850418 L2c LINE LINE
5556 chr1.40860960.40862829 <NA> <NA> <NA>
5557 chr1.40863510.40864311 AluYk4 SINE SINE
5558 chr1.40863510.40864311 MIRc SINE SINE
5559 chr1.40863510.40864311 AluJr SINE SINE
5560 chr1.40863510.40864311 MIR3 SINE SINE
5561 chr1.40863510.40864311 MIRc SINE SINE
5562 chr1.40868366.40868621 Tigger3b DNA DNA
5563 chr1.40868366.40868621 L2a LINE LINE
5564 chr1.40875690.40876205 AluJr SINE SINE
5565 chr1.40875690.40876205 (TGC)n Other Simple_repeat
5566 chr1.40875690.40876205 (GTTT)n Other Simple_repeat
5567 chr1.40875690.40876205 MIR SINE SINE
5568 chr1.40877621.40878173 MIR SINE SINE
5569 chr1.40877621.40878173 AluJr SINE SINE
5570 chr1.40889618.40890247 AluSx SINE SINE
5571 chr1.40889618.40890247 MER5A DNA DNA
5572 chr1.40889618.40890247 (AT)n Other Simple_repeat
5573 chr1.40889618.40890247 AluJo SINE SINE
5574 chr1.40897446.40897880 AluJo SINE SINE
5575 chr1.40897446.40897880 MIR3 SINE SINE
5576 chr1.40897446.40897880 MER113A DNA DNA
5577 chr1.40923063.40923408 MIRb SINE SINE
5578 chr1.40932201.40932447 <NA> <NA> <NA>
5579 chr1.40948624.40949327 L2b LINE LINE
5580 chr1.40952309.40952946 MER5A DNA DNA
5581 chr1.40952309.40952946 L2b LINE LINE
5582 chr1.40967465.40968387 AluJr4 SINE SINE
5583 chr1.40967465.40968387 L2a LINE LINE
5584 chr1.40967465.40968387 AluSx4 SINE SINE
5585 chr1.40977007.40977335 L2-3_Crp LINE LINE
5586 chr1.40977007.40977335 L2b LINE LINE
5587 chr1.40977833.40977999 AluJo SINE SINE
5588 chr1.40979226.40980601 (CCCGC)n Other Simple_repeat
5589 chr1.40979226.40980601 G-rich Other Low_complexity
5590 chr1.40979226.40980601 MIRc SINE SINE
5591 chr1.40980791.40981081 <NA> <NA> <NA>
5592 chr1.40986883.40987230 MIR SINE SINE
5593 chr1.40986883.40987230 OldhAT1 DNA DNA
5594 chr1.41003628.41004444 MIR SINE SINE
5595 chr1.41003628.41004444 MLT1H2 LTR LTR
5596 chr1.41006765.41007573 L2a LINE LINE
5597 chr1.41017200.41018055 <NA> <NA> <NA>
5598 chr1.41023382.41023743 <NA> <NA> <NA>
5599 chr1.41032900.41033698 AluSx3 SINE SINE
5600 chr1.41032900.41033698 L2a LINE LINE
5601 chr1.41032900.41033698 AluJb SINE SINE
5602 chr1.41032900.41033698 L2a LINE LINE
5603 chr1.41032900.41033698 MIR SINE SINE
5604 chr1.41033964.41034245 MIRc SINE SINE
5605 chr1.41044140.41044568 (AGGC)n Other Simple_repeat
5606 chr1.41045473.41046123 <NA> <NA> <NA>
5607 chr1.41046334.41046733 (CCTC)n Other Simple_repeat
5608 chr1.41074009.41074314 (T)n Other Simple_repeat
5609 chr1.41074009.41074314 MIRb SINE SINE
5610 chr1.41102182.41102727 (TG)n Other Simple_repeat
5611 chr1.41109060.41110221 MIRb SINE SINE
5612 chr1.41109060.41110221 L2a LINE LINE
5613 chr1.41123023.41123844 AluJo SINE SINE
5614 chr1.41123023.41123844 MER5B DNA DNA
5615 chr1.41150811.41151393 AluY SINE SINE
5616 chr1.41151864.41153047 <NA> <NA> <NA>
5617 chr1.41155934.41156251 AluSx1 SINE SINE
5618 chr1.41155934.41156251 L3 LINE LINE
5619 chr1.41155934.41156251 L3 LINE LINE
5620 chr1.41158182.41158785 L2c LINE LINE
5621 chr1.41158182.41158785 L2c LINE LINE
5622 chr1.41162409.41163097 MER52D LTR LTR
5623 chr1.41217453.41217883 MLT1C-int LTR LTR
5624 chr1.41222483.41222823 <NA> <NA> <NA>
5625 chr1.41226904.41227286 L2c LINE LINE
5626 chr1.41226904.41227286 L2b LINE LINE
5627 chr1.41234051.41234617 AluJr4 SINE SINE
5628 chr1.41234051.41234617 AluY SINE SINE
5629 chr1.41238372.41238804 L2c LINE LINE
5630 chr1.41241213.41242898 L3 LINE LINE
5631 chr1.41241213.41242898 (GCGG)n Other Simple_repeat
5632 chr1.41241213.41242898 FRAM SINE SINE
5633 chr1.41243713.41244181 MLT1E3 LTR LTR
5634 chr1.41245645.41246006 L2b LINE LINE
5635 chr1.41265285.41265632 MIR3 SINE SINE
5636 chr1.41268143.41268700 MIRb SINE SINE
5637 chr1.41272713.41273076 MamTip2 DNA DNA
5638 chr1.41272713.41273076 L3 LINE LINE
5639 chr1.41282606.41283678 MIRc SINE SINE
5640 chr1.41282606.41283678 MIR3 SINE SINE
5641 chr1.41282606.41283678 MIRb SINE SINE
5642 chr1.41282606.41283678 MIR3 SINE SINE
5643 chr1.41305843.41306321 L2a LINE LINE
5644 chr1.41305843.41306321 LTR33A_ LTR LTR
5645 chr1.41315200.41316104 (AC)n Other Simple_repeat
5646 chr1.41319907.41320416 MIR3 SINE SINE
5647 chr1.41320439.41320829 <NA> <NA> <NA>
5648 chr1.41322814.41323158 AluSp SINE SINE
5649 chr1.41325884.41326176 MLT1G LTR LTR
5650 chr1.41325884.41326176 MLT1G LTR LTR
5651 chr1.41328632.41329549 <NA> <NA> <NA>
5652 chr1.41330004.41330792 MIRb SINE SINE
5653 chr1.41333256.41333618 L2c LINE LINE
5654 chr1.41333256.41333618 MLT1K LTR LTR
5655 chr1.41342008.41342503 MIRb SINE SINE
5656 chr1.41357578.41358490 <NA> <NA> <NA>
5657 chr1.41360339.41360480 L2a LINE LINE
5658 chr1.41360914.41362311 MIRc SINE SINE
5659 chr1.41360914.41362311 (CCCCGC)n Other Simple_repeat
5660 chr1.41360914.41362311 (AGCCGG)n Other Simple_repeat
5661 chr1.41360914.41362311 (CGCGCCC)n Other Simple_repeat
5662 chr1.41360914.41362311 (CCCGGC)n Other Simple_repeat
5663 chr1.41365689.41366323 <NA> <NA> <NA>
5664 chr1.41366536.41366934 (AGAC)n Other Simple_repeat
5665 chr1.41369496.41369848 MER5B DNA DNA
5666 chr1.41371778.41372563 MIR3 SINE SINE
5667 chr1.41371778.41372563 (CCT)n Other Simple_repeat
5668 chr1.41381913.41382946 G-rich Other Low_complexity
5669 chr1.41387708.41388187 <NA> <NA> <NA>
5670 chr1.41404306.41404958 MIRb SINE SINE
5671 chr1.41412769.41413117 L2b LINE LINE
5672 chr1.41417027.41417417 MIRb SINE SINE
5673 chr1.41418933.41419218 MIR3 SINE SINE
5674 chr1.41423555.41425182 (TG)n Other Simple_repeat
5675 chr1.41427547.41427781 <NA> <NA> <NA>
5676 chr1.41432460.41433392 MLT1B LTR LTR
5677 chr1.41432460.41433392 MLT1B LTR LTR
5678 chr1.41432460.41433392 MIRb SINE SINE
5679 chr1.41435601.41436046 <NA> <NA> <NA>
5680 chr1.41448335.41448759 L2b LINE LINE
5681 chr1.41455795.41456265 L2c LINE LINE
5682 chr1.41474505.41475283 MIR SINE SINE
5683 chr1.41476008.41476278 L2c LINE LINE
5684 chr1.41476008.41476278 (GA)n Other Simple_repeat
5685 chr1.41482965.41483365 (GT)n Other Simple_repeat
5686 chr1.41485593.41487665 MIRb SINE SINE
5687 chr1.41485593.41487665 MIR3 SINE SINE
5688 chr1.41493087.41493434 <NA> <NA> <NA>
5689 chr1.41495354.41496799 MIR SINE SINE
5690 chr1.41498543.41498719 MIR SINE SINE
5691 chr1.41500577.41501302 MIR SINE SINE
5692 chr1.41503984.41504644 MLT1I LTR LTR
5693 chr1.41515932.41516656 L2a LINE LINE
5694 chr1.41515932.41516656 L2a LINE LINE
5695 chr1.41521585.41522171 (AGAC)n Other Simple_repeat
5696 chr1.41525551.41526538 (CACCCT)n Other Simple_repeat
5697 chr1.41536203.41536600 L3 LINE LINE
5698 chr1.41536203.41536600 MER102c DNA DNA
5699 chr1.41537506.41538403 L2c LINE LINE
5700 chr1.41542618.41542894 (GCAGAG)n Other Simple_repeat
5701 chr1.41558679.41559171 <NA> <NA> <NA>
5702 chr1.41573868.41574716 <NA> <NA> <NA>
5703 chr1.41607783.41608696 MLT1J LTR LTR
5704 chr1.41607783.41608696 MLT1J LTR LTR
5705 chr1.41607783.41608696 HAL1ME LINE LINE
5706 chr1.41607783.41608696 HAL1ME LINE LINE
5707 chr1.41619858.41620040 <NA> <NA> <NA>
5708 chr1.41622338.41622813 MER58A DNA DNA
5709 chr1.41622338.41622813 L2c LINE LINE
5710 chr1.41626078.41626541 <NA> <NA> <NA>
5711 chr1.41631988.41632393 L2c LINE LINE
5712 chr1.41631988.41632393 L2c LINE LINE
5713 chr1.41639441.41640166 MIRb SINE SINE
5714 chr1.41649961.41650489 Plat_L3 LINE LINE
5715 chr1.41649961.41650489 MIRb SINE SINE
5716 chr1.41661530.41663327 (GCGG)n Other Simple_repeat
5717 chr1.41665007.41665590 <NA> <NA> <NA>
5718 chr1.41667009.41667455 L2c LINE LINE
5719 chr1.41670404.41670974 L2a LINE LINE
5720 chr1.41670404.41670974 L2a LINE LINE
5721 chr1.41672216.41672773 MIRb SINE SINE
5722 chr1.41678356.41678883 <NA> <NA> <NA>
5723 chr1.41681368.41681830 AluJo SINE SINE
5724 chr1.41695068.41695517 L2b LINE LINE
5725 chr1.41713674.41714239 CR1-3_Croc LINE LINE
5726 chr1.41728283.41729040 MIR SINE SINE
5727 chr1.41735431.41736208 <NA> <NA> <NA>
5728 chr1.41742366.41742592 <NA> <NA> <NA>
5729 chr1.41761021.41761760 (GTGCAT)n Other Simple_repeat
5730 chr1.41761021.41761760 (GTGT)n Other Simple_repeat
5731 chr1.41762353.41762487 LTR28C LTR LTR
5732 chr1.41766604.41766989 MIRb SINE SINE
5733 chr1.41767435.41767833 L3 LINE LINE
5734 chr1.41773126.41773688 MIRb SINE SINE
5735 chr1.41773126.41773688 MIRc SINE SINE
5736 chr1.41783096.41783622 (CA)n Other Simple_repeat
5737 chr1.41810417.41810695 <NA> <NA> <NA>
5738 chr1.41812081.41812793 FRAM SINE SINE
5739 chr1.41812081.41812793 L3 LINE LINE
5740 chr1.41823269.41823999 MLT1B LTR LTR
5741 chr1.41823269.41823999 MIRb SINE SINE
5742 chr1.41844235.41844527 <NA> <NA> <NA>
5743 chr1.41847726.41848129 <NA> <NA> <NA>
5744 chr1.41851703.41851890 MIRc SINE SINE
5745 chr1.41862305.41863360 <NA> <NA> <NA>
5746 chr1.41870026.41870541 L2a LINE LINE
5747 chr1.41874925.41875808 L2b LINE LINE
5748 chr1.41876671.41877350 MIRb SINE SINE
5749 chr1.41884194.41884513 AluSz SINE SINE
5750 chr1.41884918.41885146 <NA> <NA> <NA>
5751 chr1.41888774.41889258 (AC)n Other Simple_repeat
5752 chr1.41890663.41891159 MIRb SINE SINE
5753 chr1.41900524.41901291 Zaphod3 DNA DNA
5754 chr1.41900524.41901291 L2b LINE LINE
5755 chr1.41900524.41901291 L2b LINE LINE
5756 chr1.41901701.41902538 L2b LINE LINE
5757 chr1.41901701.41902538 L2a LINE LINE
5758 chr1.41901701.41902538 LTR16A2 LTR LTR
5759 chr1.41917715.41918419 (TTGGG)n Other Simple_repeat
5760 chr1.41917715.41918419 (CCG)n Other Simple_repeat
5761 chr1.41919878.41920370 <NA> <NA> <NA>
5762 chr1.41920742.41920953 L3b LINE LINE
5763 chr1.41954523.41954954 MIRb SINE SINE
5764 chr1.41955481.41955874 <NA> <NA> <NA>
5765 chr1.41957524.41957914 <NA> <NA> <NA>
5766 chr1.42021516.42021819 L2a LINE LINE
5767 chr1.42021516.42021819 (TTCTTCA)n Other Simple_repeat
5768 chr1.42035022.42036535 (GCCCCAG)n Other Simple_repeat
5769 chr1.42042988.42043577 <NA> <NA> <NA>
5770 chr1.42047277.42047809 MIR3 SINE SINE
5771 chr1.42047277.42047809 MIR SINE SINE
5772 chr1.42143349.42143598 MLT1I LTR LTR
5773 chr1.42145989.42146578 (CA)n Other Simple_repeat
5774 chr1.42146624.42147259 (GT)n Other Simple_repeat
5775 chr1.42165501.42166798 MIRb SINE SINE
5776 chr1.42165501.42166798 (CTGTC)n Other Simple_repeat
5777 chr1.42165501.42166798 (GT)n Other Simple_repeat
5778 chr1.42167460.42167725 G-rich Other Low_complexity
5779 chr1.42172273.42172699 (CACACG)n Other Simple_repeat
5780 chr1.42172273.42172699 (CA)n Other Simple_repeat
5781 chr1.42172870.42173631 MIRb SINE SINE
5782 chr1.42172870.42173631 MIR SINE SINE
5783 chr1.42177641.42177901 (AC)n Other Simple_repeat
5784 chr1.42178300.42178675 AluSx SINE SINE
5785 chr1.42179429.42179693 <NA> <NA> <NA>
5786 chr1.42186107.42186513 <NA> <NA> <NA>
5787 chr1.42203312.42203578 L1MEg LINE LINE
5788 chr1.42211365.42211789 L1PBb LINE LINE
5789 chr1.42222265.42222876 L2b LINE LINE
5790 chr1.42222265.42222876 MER94 DNA DNA
5791 chr1.42222265.42222876 L2b LINE LINE
5792 chr1.42222265.42222876 L2a LINE LINE
5793 chr1.42226169.42227004 AluSx SINE SINE
5794 chr1.42226169.42227004 L2c LINE LINE
5795 chr1.42241075.42241451 L1MA4A LINE LINE
5796 chr1.42259491.42260058 Plat_L3 LINE LINE
5797 chr1.42282220.42283163 L2c LINE LINE
5798 chr1.42314305.42314673 AluSq2 SINE SINE
5799 chr1.42316216.42316620 AluJr SINE SINE
5800 chr1.42316216.42316620 MIR SINE SINE
5801 chr1.42320814.42321021 <NA> <NA> <NA>
5802 chr1.42324556.42325150 Tigger3c DNA DNA
5803 chr1.42334199.42336078 (AGGCCCC)n Other Simple_repeat
5804 chr1.42334199.42336078 (CCG)n Other Simple_repeat
5805 chr1.42344217.42344540 L2a LINE LINE
5806 chr1.42344217.42344540 MIR SINE SINE
5807 chr1.42344217.42344540 AluSq2 SINE SINE
5808 chr1.42379922.42381271 (CCCG)n Other Simple_repeat
5809 chr1.42419291.42419801 <NA> <NA> <NA>
5810 chr1.42420772.42421340 MIRc SINE SINE
5811 chr1.42429765.42430036 MIRb SINE SINE
5812 chr1.42433324.42433774 <NA> <NA> <NA>
5813 chr1.42439944.42440376 L1MB7 LINE LINE
5814 chr1.42439944.42440376 (CATCTC)n Other Simple_repeat
5815 chr1.42439944.42440376 L1MB7 LINE LINE
5816 chr1.42455916.42457116 (GGCGC)n Other Simple_repeat
5817 chr1.42462926.42463764 MIR3 SINE SINE
5818 chr1.42479671.42479871 LTR53B LTR LTR
5819 chr1.42484360.42484700 <NA> <NA> <NA>
5820 chr1.42529728.42530206 MER44D DNA DNA
5821 chr1.42533111.42533735 LTR10D LTR LTR
5822 chr1.42533111.42533735 MIRb SINE SINE
5823 chr1.42657967.42659305 L2a LINE LINE
5824 chr1.42669971.42670584 <NA> <NA> <NA>
5825 chr1.42681571.42683439 MIRb SINE SINE
5826 chr1.42681571.42683439 (GCC)n Other Simple_repeat
5827 chr1.42706174.42706722 Tigger3b DNA DNA
5828 chr1.42706174.42706722 L1MA4A LINE LINE
5829 chr1.42736222.42736520 <NA> <NA> <NA>
5830 chr1.42740247.42740436 <NA> <NA> <NA>
5831 chr1.42747084.42747546 <NA> <NA> <NA>
5832 chr1.42749149.42749514 <NA> <NA> <NA>
5833 chr1.42756772.42757565 L2a LINE LINE
5834 chr1.42756772.42757565 MIRb SINE SINE
5835 chr1.42756772.42757565 L1M6B LINE LINE
5836 chr1.42766013.42767766 MIRc SINE SINE
5837 chr1.42777622.42778150 MLT1F2 LTR LTR
5838 chr1.42777622.42778150 L2 LINE LINE
5839 chr1.42816270.42817664 MIR3 SINE SINE
5840 chr1.42816270.42817664 MIRc SINE SINE
5841 chr1.42816270.42817664 G-rich Other Low_complexity
5842 chr1.42816270.42817664 (GGCCG)n Other Simple_repeat
5843 chr1.42816270.42817664 MIRc SINE SINE
5844 chr1.42830981.42831440 <NA> <NA> <NA>
5845 chr1.42846184.42847287 <NA> <NA> <NA>
5846 chr1.42877410.42877799 L1PA13 LINE LINE
5847 chr1.42877410.42877799 L1MEd LINE LINE
5848 chr1.42887838.42888544 <NA> <NA> <NA>
5849 chr1.42913317.42913638 (TA)n Other Simple_repeat
5850 chr1.42913317.42913638 (ATATATACAC)n Other Simple_repeat
5851 chr1.42913317.42913638 (TA)n Other Simple_repeat
5852 chr1.42914326.42914771 L1M3c LINE LINE
5853 chr1.42914326.42914771 L1MCa LINE LINE
5854 chr1.42923052.42923345 L2 LINE LINE
5855 chr1.42923994.42925055 (CCCAC)n Other Simple_repeat
5856 chr1.42923994.42925055 (CCCGCA)n Other Simple_repeat
5857 chr1.42928017.42928199 MIRb SINE SINE
5858 chr1.42931092.42931311 MIR3 SINE SINE
5859 chr1.42931954.42932456 <NA> <NA> <NA>
5860 chr1.42936357.42936829 <NA> <NA> <NA>
5861 chr1.42940730.42941431 AluJo SINE SINE
5862 chr1.42940730.42941431 (TTTTAT)n Other Simple_repeat
5863 chr1.42940730.42941431 L2 LINE LINE
5864 chr1.42941471.42942130 MIRc SINE SINE
5865 chr1.42941471.42942130 MER5B DNA DNA
5866 chr1.42943273.42943466 <NA> <NA> <NA>
5867 chr1.42952369.42952711 <NA> <NA> <NA>
5868 chr1.42957787.42959473 (GCCGGG)n Other Simple_repeat
5869 chr1.42957787.42959473 MIR3 SINE SINE
5870 chr1.42957787.42959473 MIR SINE SINE
5871 chr1.42962688.42962933 (GGT)n Other Simple_repeat
5872 chr1.42966964.42967538 MIRc SINE SINE
5873 chr1.42966964.42967538 MIR3 SINE SINE
5874 chr1.42971888.42972024 MLT1H2 LTR LTR
5875 chr1.42973210.42973774 L1MC LINE LINE
5876 chr1.42992045.42992578 LTR48B LTR LTR
5877 chr1.42992045.42992578 L1MCa LINE LINE
5878 chr1.43005662.43006205 <NA> <NA> <NA>
5879 chr1.43008314.43009000 MIR SINE SINE
5880 chr1.43031545.43031959 L1ME4a LINE LINE
5881 chr1.43044831.43045337 ERV3-16A3_I-int LTR LTR
5882 chr1.43048740.43048950 <NA> <NA> <NA>
5883 chr1.43049236.43049961 (CCTGGC)n Other Simple_repeat
5884 chr1.43049236.43049961 L3 LINE LINE
5885 chr1.43049236.43049961 LTR107_Mam LTR LTR
5886 chr1.43055040.43055272 <NA> <NA> <NA>
5887 chr1.43055862.43056209 L2b LINE LINE
5888 chr1.43055862.43056209 L2b LINE LINE
5889 chr1.43058570.43058989 (GGCTGG)n Other Simple_repeat
5890 chr1.43069559.43070014 (GGCCA)n Other Simple_repeat
5891 chr1.43073548.43074080 MIRb SINE SINE
5892 chr1.43073548.43074080 L1ME3B LINE LINE
5893 chr1.43120005.43120519 L1PA2 LINE LINE
5894 chr1.43120005.43120519 L1MB3 LINE LINE
5895 chr1.43137641.43138231 MLT1I LTR LTR
5896 chr1.43137641.43138231 MIRb SINE SINE
5897 chr1.43147548.43148140 <NA> <NA> <NA>
5898 chr1.43152862.43153258 MIR SINE SINE
5899 chr1.43152862.43153258 MIRc SINE SINE
5900 chr1.43171538.43172943 <NA> <NA> <NA>
5901 chr1.43206572.43207509 Tigger3a DNA DNA
5902 chr1.43226864.43227648 L2 LINE LINE
5903 chr1.43232176.43232802 <NA> <NA> <NA>
5904 chr1.43232883.43233306 MIR3 SINE SINE
5905 chr1.43232883.43233306 AluSg SINE SINE
5906 chr1.43238063.43238494 <NA> <NA> <NA>
5907 chr1.43241502.43242034 MER5A1 DNA DNA
5908 chr1.43241502.43242034 L2b LINE LINE
5909 chr1.43270414.43270681 (GAGTTG)n Other Simple_repeat
5910 chr1.43270897.43271470 MIRb SINE SINE
5911 chr1.43270897.43271470 L2c LINE LINE
5912 chr1.43274338.43274609 LTR91 LTR LTR
5913 chr1.43292355.43292617 AluJb SINE SINE
5914 chr1.43294278.43294913 AluJr SINE SINE
5915 chr1.43302815.43303869 MIRb SINE SINE
5916 chr1.43302815.43303869 L2 LINE LINE
5917 chr1.43302815.43303869 L2c LINE LINE
5918 chr1.43330193.43330624 <NA> <NA> <NA>
5919 chr1.43334457.43335107 L2 LINE LINE
5920 chr1.43334457.43335107 L2 LINE LINE
5921 chr1.43344279.43344548 L2c LINE LINE
5922 chr1.43345319.43345476 L2a LINE LINE
5923 chr1.43348560.43350037 G-rich Other Low_complexity
5924 chr1.43348560.43350037 L2c LINE LINE
5925 chr1.43358157.43359340 MIR1_Amn SINE SINE
5926 chr1.43358157.43359340 (GCCCC)n Other Simple_repeat
5927 chr1.43367049.43368630 (CTGGGCAGGG)n Other Simple_repeat
5928 chr1.43373016.43373666 <NA> <NA> <NA>
5929 chr1.43389308.43390372 <NA> <NA> <NA>
5930 chr1.43405259.43406031 AluSq2 SINE SINE
5931 chr1.43405259.43406031 L2c LINE LINE
5932 chr1.43414515.43415287 AluSg7 SINE SINE
5933 chr1.43426862.43427027 <NA> <NA> <NA>
5934 chr1.43435931.43436139 <NA> <NA> <NA>
5935 chr1.43444798.43445117 <NA> <NA> <NA>
5936 chr1.43445616.43445879 MIR3 SINE SINE
5937 chr1.43452805.43454718 L2c LINE LINE
5938 chr1.43452805.43454718 (CCCGG)n Other Simple_repeat
5939 chr1.43452805.43454718 (GGCGGCG)n Other Simple_repeat
5940 chr1.43452805.43454718 L1ME4a LINE LINE
5941 chr1.43452805.43454718 MLT1M LTR LTR
5942 chr1.43472316.43473311 ERVL-B4-int LTR LTR
5943 chr1.43472316.43473311 LTR33 LTR LTR
5944 chr1.43472316.43473311 LTR33 LTR LTR
5945 chr1.43472316.43473311 L1MEg LINE LINE
5946 chr1.43475691.43476458 LTR33 LTR LTR
5947 chr1.43475691.43476458 LTR33 LTR LTR
5948 chr1.43475691.43476458 L1MEd LINE LINE
5949 chr1.43523175.43523450 L2c LINE LINE
5950 chr1.43524863.43525401 L2c LINE LINE
5951 chr1.43526054.43526377 L2 LINE LINE
5952 chr1.43526054.43526377 AluJb SINE SINE
5953 chr1.43529264.43529582 <NA> <NA> <NA>
5954 chr1.43530460.43531379 G-rich Other Low_complexity
5955 chr1.43530460.43531379 (CGGCTC)n Other Simple_repeat
5956 chr1.43530460.43531379 (CCCCT)n Other Simple_repeat
5957 chr1.43530460.43531379 (CGCT)n Other Simple_repeat
5958 chr1.43531530.43532154 (CGTCC)n Other Simple_repeat
5959 chr1.43541866.43542317 <NA> <NA> <NA>
5960 chr1.43549989.43550619 (GCCCC)n Other Simple_repeat
5961 chr1.43549989.43550619 L2b LINE LINE
5962 chr1.43552764.43553267 L2b LINE LINE
5963 chr1.43552764.43553267 MIR SINE SINE
5964 chr1.43554560.43554719 <NA> <NA> <NA>
5965 chr1.43557800.43559134 (CCCGC)n Other Simple_repeat
5966 chr1.43565412.43566101 <NA> <NA> <NA>
5967 chr1.43569117.43569393 <NA> <NA> <NA>
5968 chr1.43582071.43582712 MIRb SINE SINE
5969 chr1.43587556.43588164 (CATGCC)n Other Simple_repeat
5970 chr1.43587556.43588164 (CCCTG)n Other Simple_repeat
5971 chr1.43596705.43597647 <NA> <NA> <NA>
5972 chr1.43605808.43606099 <NA> <NA> <NA>
5973 chr1.43634752.43635029 L2c LINE LINE
5974 chr1.43649533.43650744 AluSp SINE SINE
5975 chr1.43649533.43650744 MER81 DNA DNA
5976 chr1.43649533.43650744 MIRb SINE SINE
5977 chr1.43668987.43669585 MIRb SINE SINE
5978 chr1.43668987.43669585 (TGTATG)n Other Simple_repeat
5979 chr1.43668987.43669585 L2b LINE LINE
5980 chr1.43671888.43672322 AluSg SINE SINE
5981 chr1.43687220.43687634 <NA> <NA> <NA>
5982 chr1.43688619.43689074 <NA> <NA> <NA>
5983 chr1.43706884.43708159 (CGCCTC)n Other Simple_repeat
5984 chr1.43706884.43708159 (CCGCC)n Other Simple_repeat
5985 chr1.43706884.43708159 G-rich Other Low_complexity
5986 chr1.43711624.43711754 Tigger15a DNA DNA
5987 chr1.43719821.43720406 AluSz SINE SINE
5988 chr1.43719821.43720406 AluJb SINE SINE
5989 chr1.43719821.43720406 L1MB8 LINE LINE
5990 chr1.43719821.43720406 MSTD LTR LTR
5991 chr1.43743309.43743717 L1M4a1 LINE LINE
5992 chr1.43743309.43743717 (GCT)n Other Simple_repeat
5993 chr1.43760913.43761235 L1MB7 LINE LINE
5994 chr1.43760913.43761235 MLT1J2-int LTR LTR
5995 chr1.43763525.43764031 MIRb SINE SINE
5996 chr1.43763525.43764031 MIRb SINE SINE
5997 chr1.43764680.43764906 LTR16A LTR LTR
5998 chr1.43766148.43767307 (TAAA)n Other Simple_repeat
5999 chr1.43766148.43767307 L2c LINE LINE
6000 chr1.43774430.43774818 L2a LINE LINE
6001 chr1.43776252.43776797 L1MB8 LINE LINE
6002 chr1.43776252.43776797 LTR83 LTR LTR
6003 chr1.43783577.43784149 CR1_Mam LINE LINE
6004 chr1.43787137.43787259 <NA> <NA> <NA>
6005 chr1.43787587.43787990 <NA> <NA> <NA>
6006 chr1.43795437.43796531 Tigger19b DNA DNA
6007 chr1.43795437.43796531 Tigger19b DNA DNA
6008 chr1.43795437.43796531 L1MD2 LINE LINE
6009 chr1.43821926.43822613 L2a LINE LINE
6010 chr1.43835154.43835436 <NA> <NA> <NA>
6011 chr1.43836460.43837305 L2b LINE LINE
6012 chr1.43836460.43837305 MIR3 SINE SINE
6013 chr1.43836460.43837305 L2c LINE LINE
6014 chr1.43849656.43849990 <NA> <NA> <NA>
6015 chr1.43858234.43858988 <NA> <NA> <NA>
6016 chr1.43862114.43862488 L2c LINE LINE
6017 chr1.43868558.43869095 <NA> <NA> <NA>
6018 chr1.43874823.43875180 L2a LINE LINE
6019 chr1.43881333.43881748 L2b LINE LINE
6020 chr1.43892834.43893484 <NA> <NA> <NA>
6021 chr1.43912526.43913171 L2b LINE LINE
6022 chr1.43929513.43930013 AluSg SINE SINE
6023 chr1.43933256.43935055 <NA> <NA> <NA>
6024 chr1.43936485.43936955 <NA> <NA> <NA>
6025 chr1.43946258.43947339 (GCCGG)n Other Simple_repeat
6026 chr1.43969631.43970706 AluJb SINE SINE
6027 chr1.43974335.43975677 L2a LINE LINE
6028 chr1.43974335.43975677 (GGAC)n Other Simple_repeat
6029 chr1.43974335.43975677 (CCG)n Other Simple_repeat
6030 chr1.43977515.43977842 <NA> <NA> <NA>
6031 chr1.43979718.43980182 (GT)n Other Simple_repeat
6032 chr1.43991075.43992294 <NA> <NA> <NA>
6033 chr1.43994884.43995062 <NA> <NA> <NA>
6034 chr1.44005592.44006159 MIRb SINE SINE
6035 chr1.44005592.44006159 L2c LINE LINE
6036 chr1.44029610.44031973 L2b LINE LINE
6037 chr1.44029610.44031973 (GGCA)n Other Simple_repeat
6038 chr1.44029610.44031973 (CA)n Other Simple_repeat
6039 chr1.44029610.44031973 (GCCGC)n Other Simple_repeat
6040 chr1.44035729.44036291 <NA> <NA> <NA>
6041 chr1.44036374.44037146 MIR SINE SINE
6042 chr1.44036374.44037146 MIRb SINE SINE
6043 chr1.44044193.44044596 MER20 DNA DNA
6044 chr1.44047584.44048534 (TG)n Other Simple_repeat
6045 chr1.44049933.44050102 L1ME3A LINE LINE
6046 chr1.44061870.44062339 AluSx1 SINE SINE
6047 chr1.44061870.44062339 MER66B LTR LTR
6048 chr1.44061870.44062339 (TATATC)n Other Simple_repeat
6049 chr1.44072101.44072568 L2 LINE LINE
6050 chr1.44072101.44072568 AluJr SINE SINE
6051 chr1.44072101.44072568 (AAAT)n Other Simple_repeat
6052 chr1.44072101.44072568 AluJr SINE SINE
6053 chr1.44077489.44077891 MLT1G3 LTR LTR
6054 chr1.44085329.44085563 L2a LINE LINE
6055 chr1.44085329.44085563 AluJr SINE SINE
6056 chr1.44086685.44087070 L2a LINE LINE
6057 chr1.44089321.44089994 LTR16A LTR LTR
6058 chr1.44089321.44089994 MER58A DNA DNA
6059 chr1.44089321.44089994 AluJb SINE SINE
6060 chr1.44103438.44104109 <NA> <NA> <NA>
6061 chr1.44169756.44170122 L1M2 LINE LINE
6062 chr1.44213124.44214133 MIRb SINE SINE
6063 chr1.44217800.44218381 <NA> <NA> <NA>
6064 chr1.44238185.44238626 <NA> <NA> <NA>
6065 chr1.44239215.44241176 (AGAGGAGGG)n Other Simple_repeat
6066 chr1.44239215.44241176 MIRb SINE SINE
6067 chr1.44249498.44250948 <NA> <NA> <NA>
6068 chr1.44270629.44271012 MIRb SINE SINE
6069 chr1.44275816.44276444 MSTB1 LTR LTR
6070 chr1.44290426.44291131 <NA> <NA> <NA>
6071 chr1.44293956.44294241 <NA> <NA> <NA>
6072 chr1.44294616.44294988 <NA> <NA> <NA>
6073 chr1.44296865.44297325 <NA> <NA> <NA>
6074 chr1.44303124.44303429 <NA> <NA> <NA>
6075 chr1.44308032.44308709 <NA> <NA> <NA>
6076 chr1.44316281.44316583 <NA> <NA> <NA>
6077 chr1.44318194.44318969 MIR1_Amn SINE SINE
6078 chr1.44327645.44328542 MIR SINE SINE
6079 chr1.44327645.44328542 MIRc SINE SINE
6080 chr1.44327645.44328542 MER5A DNA DNA
6081 chr1.44327645.44328542 MER5A1 DNA DNA
6082 chr1.44328747.44329146 <NA> <NA> <NA>
6083 chr1.44354779.44355604 (GGC)n Other Simple_repeat
6084 chr1.44361428.44361885 AluSp SINE SINE
6085 chr1.44368476.44368916 L2b LINE LINE
6086 chr1.44369767.44370598 (CATA)n Other Simple_repeat
6087 chr1.44369767.44370598 MIRb SINE SINE
6088 chr1.44377981.44378588 <NA> <NA> <NA>
6089 chr1.44405054.44406623 (TG)n Other Simple_repeat
6090 chr1.44405054.44406623 (GCC)n Other Simple_repeat
6091 chr1.44405054.44406623 (GGACTG)n Other Simple_repeat
6092 chr1.44405054.44406623 G-rich Other Low_complexity
6093 chr1.44406924.44407245 <NA> <NA> <NA>
6094 chr1.44417136.44417987 (CCTC)n Other Simple_repeat
6095 chr1.44418179.44418527 GA-rich Other Low_complexity
6096 chr1.44423566.44424302 L2a LINE LINE
6097 chr1.44484164.44484751 MLT1J2 LTR LTR
6098 chr1.44484164.44484751 MER105 DNA DNA
6099 chr1.44485258.44486015 <NA> <NA> <NA>
6100 chr1.44496589.44497046 <NA> <NA> <NA>
6101 chr1.44500588.44501026 L2a LINE LINE
6102 chr1.44501378.44502307 (AC)n Other Simple_repeat
6103 chr1.44501378.44502307 (TC)n Other Simple_repeat
6104 chr1.44501378.44502307 (CA)n Other Simple_repeat
6105 chr1.44524033.44525774 (TC)n Other Simple_repeat
6106 chr1.44524033.44525774 (AAGAAA)n Other Simple_repeat
6107 chr1.44524033.44525774 L2b LINE LINE
6108 chr1.44524033.44525774 L2a LINE LINE
6109 chr1.44526728.44527072 L2a LINE LINE
6110 chr1.44531927.44532875 L3 LINE LINE
6111 chr1.44531927.44532875 MIRb SINE SINE
6112 chr1.44531927.44532875 MIRb SINE SINE
6113 chr1.44552866.44553195 AluY SINE SINE
6114 chr1.44552866.44553195 L2c LINE LINE
6115 chr1.44553834.44554245 LTR33 LTR LTR
6116 chr1.44557842.44558071 CR1_Mam LINE LINE
6117 chr1.44557842.44558071 CR1_Mam LINE LINE
6118 chr1.44568221.44568424 L2a LINE LINE
6119 chr1.44568221.44568424 L2a LINE LINE
6120 chr1.44572036.44572811 L2c LINE LINE
6121 chr1.44572036.44572811 L2b LINE LINE
6122 chr1.44572036.44572811 L2c LINE LINE
6123 chr1.44595050.44595670 MER5A1 DNA DNA
6124 chr1.44609458.44610553 MIR3 SINE SINE
6125 chr1.44609458.44610553 (CCCATC)n Other Simple_repeat
6126 chr1.44616950.44618145 (CCCT)n Other Simple_repeat
6127 chr1.44616950.44618145 MIR1_Amn SINE SINE
6128 chr1.44631377.44632955 L2b LINE LINE
6129 chr1.44631377.44632955 (CCCT)n Other Simple_repeat
6130 chr1.44637392.44638473 <NA> <NA> <NA>
6131 chr1.44640271.44640560 <NA> <NA> <NA>
6132 chr1.44652647.44653306 L2a LINE LINE
6133 chr1.44655346.44655990 <NA> <NA> <NA>
6134 chr1.44660131.44660571 <NA> <NA> <NA>
6135 chr1.44673794.44674934 MIRb SINE SINE
6136 chr1.44707149.44707560 (TGAG)n Other Simple_repeat
6137 chr1.44707149.44707560 L2c LINE LINE
6138 chr1.44707149.44707560 AluJo SINE SINE
6139 chr1.44714723.44715455 AluJb SINE SINE
6140 chr1.44714723.44715455 MIR3 SINE SINE
6141 chr1.44718838.44718998 AluSp SINE SINE
6142 chr1.44721418.44722330 AluJb SINE SINE
6143 chr1.44721418.44722330 U5 Other snRNA
6144 chr1.44721418.44722330 FLAM_C SINE SINE
6145 chr1.44729305.44729535 L2a LINE LINE
6146 chr1.44739412.44740408 FLAM_C SINE SINE
6147 chr1.44739412.44740408 MIRb SINE SINE
6148 chr1.44775010.44776989 L2 LINE LINE
6149 chr1.44775010.44776989 G-rich Other Low_complexity
6150 chr1.44775010.44776989 FLAM_C SINE SINE
6151 chr1.44784126.44784724 (GCGG)n Other Simple_repeat
6152 chr1.44793417.44794087 L2b LINE LINE
6153 chr1.44793417.44794087 AluSx1 SINE SINE
6154 chr1.44796822.44797047 AluSx1 SINE SINE
6155 chr1.44796822.44797047 AluJb SINE SINE
6156 chr1.44796822.44797047 AluJo SINE SINE
6157 chr1.44799727.44801269 (CCGCGC)n Other Simple_repeat
6158 chr1.44799727.44801269 (GGT)n Other Simple_repeat
6159 chr1.44799727.44801269 AluSg SINE SINE
6160 chr1.44801978.44803062 <NA> <NA> <NA>
6161 chr1.44806019.44806353 <NA> <NA> <NA>
6162 chr1.44807289.44808437 <NA> <NA> <NA>
6163 chr1.44811481.44812163 L2c LINE LINE
6164 chr1.44812659.44814078 AluSc8 SINE SINE
6165 chr1.44812659.44814078 (GT)n Other Simple_repeat
6166 chr1.44812659.44814078 G-rich Other Low_complexity
6167 chr1.44819619.44821420 AluSx3 SINE SINE
6168 chr1.44819619.44821420 AluSx SINE SINE
6169 chr1.44819619.44821420 U5 Other snRNA
6170 chr1.44819619.44821420 L2c LINE LINE
6171 chr1.44819619.44821420 MIRc SINE SINE
6172 chr1.44819619.44821420 (TTG)n Other Simple_repeat
6173 chr1.44826625.44827341 G-rich Other Low_complexity
6174 chr1.44832434.44832719 <NA> <NA> <NA>
6175 chr1.44835802.44836343 MLT1L LTR LTR
6176 chr1.44835802.44836343 AluJo SINE SINE
6177 chr1.44842564.44843697 AluSx1 SINE SINE
6178 chr1.44842564.44843697 AluSx SINE SINE
6179 chr1.44863003.44863460 MIRb SINE SINE
6180 chr1.44863003.44863460 (ATTATTT)n Other Simple_repeat
6181 chr1.44863003.44863460 AluJr SINE SINE
6182 chr1.44875215.44876079 SVA_D Retroposon Retroposon
6183 chr1.44880839.44881583 AluY SINE SINE
6184 chr1.44880839.44881583 MIR SINE SINE
6185 chr1.44880839.44881583 L2b LINE LINE
6186 chr1.44924657.44925340 AluSc8 SINE SINE
6187 chr1.44924657.44925340 L1MA2 LINE LINE
6188 chr1.44924657.44925340 L1MB2 LINE LINE
6189 chr1.44946849.44947343 <NA> <NA> <NA>
6190 chr1.44985833.44986890 AluSx SINE SINE
6191 chr1.45010263.45011676 L2b LINE LINE
6192 chr1.45011887.45013032 L2b LINE LINE
6193 chr1.45014569.45014720 <NA> <NA> <NA>
6194 chr1.45018641.45019265 <NA> <NA> <NA>
6195 chr1.45035556.45035988 <NA> <NA> <NA>
6196 chr1.45037453.45037830 L2c LINE LINE
6197 chr1.45191197.45191546 AluYk3 SINE SINE
6198 chr1.45191197.45191546 LTR16A LTR LTR
6199 chr1.45191197.45191546 LTR16 LTR LTR
6200 chr1.45205331.45206972 (CGCC)n Other Simple_repeat
6201 chr1.45266044.45266683 LTR18B LTR LTR
6202 chr1.45300347.45300501 <NA> <NA> <NA>
6203 chr1.45303258.45304392 AluJb SINE SINE
6204 chr1.45303258.45304392 (GGAGCC)n Other Simple_repeat
6205 chr1.45326495.45327620 (GT)n Other Simple_repeat
6206 chr1.45339538.45340712 L2c LINE LINE
6207 chr1.45339538.45340712 L2c LINE LINE
6208 chr1.45347242.45347544 AluSz SINE SINE
6209 chr1.45347916.45349747 L2a LINE LINE
6210 chr1.45347916.45349747 L2c LINE LINE
6211 chr1.45359643.45360375 AluSx1 SINE SINE
6212 chr1.45361072.45361319 AluSx SINE SINE
6213 chr1.45381280.45381625 MLT1H LTR LTR
6214 chr1.45394040.45394608 AluJb SINE SINE
6215 chr1.45394040.45394608 MER5A1 DNA DNA
6216 chr1.45490335.45491680 <NA> <NA> <NA>
6217 chr1.45499633.45500571 <NA> <NA> <NA>
6218 chr1.45508387.45509068 <NA> <NA> <NA>
6219 chr1.45512410.45513051 AluSx1 SINE SINE
6220 chr1.45513642.45514089 LTR5_Hs LTR LTR
6221 chr1.45515971.45516377 FLAM_A SINE SINE
6222 chr1.45521087.45522359 <NA> <NA> <NA>
6223 chr1.45543579.45544084 AluJr4 SINE SINE
6224 chr1.45543579.45544084 L2c LINE LINE
6225 chr1.45550442.45551431 MIRb SINE SINE
6226 chr1.45550442.45551431 MIR3 SINE SINE
6227 chr1.45550442.45551431 MIRb SINE SINE
6228 chr1.45566705.45567103 <NA> <NA> <NA>
6229 chr1.45569921.45570564 <NA> <NA> <NA>
6230 chr1.45574102.45574573 MER61-int LTR LTR
6231 chr1.45583322.45585186 <NA> <NA> <NA>
6232 chr1.45590781.45591006 MER5C1 DNA DNA
6233 chr1.45613030.45613467 AluJb SINE SINE
6234 chr1.45617692.45618024 <NA> <NA> <NA>
6235 chr1.45647219.45647983 AluSq2 SINE SINE
6236 chr1.45647219.45647983 L1M8 LINE LINE
6237 chr1.45647219.45647983 LTR41 LTR LTR
6238 chr1.45647219.45647983 AluJb SINE SINE
6239 chr1.45676928.45677478 AluJb SINE SINE
6240 chr1.45676928.45677478 AluSz SINE SINE
6241 chr1.45676928.45677478 AluJb SINE SINE
6242 chr1.45678854.45679491 L1ME4a LINE LINE
6243 chr1.45678854.45679491 MER5B DNA DNA
6244 chr1.45678854.45679491 MLT1N2 LTR LTR
6245 chr1.45686130.45687673 MIR3 SINE SINE
6246 chr1.45688093.45688412 <NA> <NA> <NA>
6247 chr1.45721235.45721554 MER68 LTR LTR
6248 chr1.45730151.45730343 AluJb SINE SINE
6249 chr1.45731634.45732167 HAL1b LINE LINE
6250 chr1.45731634.45732167 AluSg SINE SINE
6251 chr1.45731634.45732167 HAL1b LINE LINE
6252 chr1.45731634.45732167 AluSx1 SINE SINE
6253 chr1.45735570.45735912 AluJb SINE SINE
6254 chr1.45735570.45735912 AluSz SINE SINE
6255 chr1.45735570.45735912 AluSc8 SINE SINE
6256 chr1.45750094.45751095 <NA> <NA> <NA>
6257 chr1.45769028.45769736 AluJb SINE SINE
6258 chr1.45769028.45769736 Charlie7 DNA DNA
6259 chr1.45769028.45769736 MLT1F2 LTR LTR
6260 chr1.45802706.45804446 MIRc SINE SINE
6261 chr1.45802706.45804446 MIRb SINE SINE
6262 chr1.45802706.45804446 L2c LINE LINE
6263 chr1.45802706.45804446 (GCC)n Other Simple_repeat
6264 chr1.45840724.45841196 MER57C1 LTR LTR
6265 chr1.45840724.45841196 AluJb SINE SINE
6266 chr1.45840724.45841196 FLAM_C SINE SINE
6267 chr1.45843528.45843907 <NA> <NA> <NA>
6268 chr1.45872018.45872532 FLAM_C SINE SINE
6269 chr1.45872018.45872532 AluSp SINE SINE
6270 chr1.45875993.45876452 L2b LINE LINE
6271 chr1.45881505.45882134 L1ME3C LINE LINE
6272 chr1.45881505.45882134 AluY SINE SINE
6273 chr1.45883528.45883873 MIRc SINE SINE
6274 chr1.45883528.45883873 A-rich Other Low_complexity
6275 chr1.45884754.45884999 MIR3 SINE SINE
6276 chr1.45891996.45893029 MER92-int LTR LTR
6277 chr1.45913210.45914369 <NA> <NA> <NA>
6278 chr1.45929174.45929682 L1MC5 LINE LINE
6279 chr1.45945753.45946348 L2a LINE LINE
6280 chr1.45953982.45954979 <NA> <NA> <NA>
6281 chr1.45969323.45970125 L1MCa LINE LINE
6282 chr1.45969323.45970125 MER1A DNA DNA
6283 chr1.45969323.45970125 L1MCa LINE LINE
6284 chr1.45998135.45998524 <NA> <NA> <NA>
6285 chr1.46008470.46008896 <NA> <NA> <NA>
6286 chr1.46012341.46012876 MIRc SINE SINE
6287 chr1.46012341.46012876 L2c LINE LINE
6288 chr1.46012341.46012876 L2c LINE LINE
6289 chr1.46012341.46012876 AluJo SINE SINE
6290 chr1.46012341.46012876 AluSz SINE SINE
6291 chr1.46018830.46020350 L2c LINE LINE
6292 chr1.46018830.46020350 L2c LINE LINE
6293 chr1.46026368.46027120 L2c LINE LINE
6294 chr1.46026368.46027120 MIRb SINE SINE
6295 chr1.46026368.46027120 L2c LINE LINE
6296 chr1.46031262.46031773 MIR SINE SINE
6297 chr1.46034499.46035075 (CTGT)n Other Simple_repeat
6298 chr1.46036845.46037641 L2b LINE LINE
6299 chr1.46039617.46040018 <NA> <NA> <NA>
6300 chr1.46042019.46042386 <NA> <NA> <NA>
6301 chr1.46053752.46054332 MLT1A0 LTR LTR
6302 chr1.46053752.46054332 X6A_LINE LINE LINE
6303 chr1.46053752.46054332 AluSx SINE SINE
6304 chr1.46069957.46070364 L2a LINE LINE
6305 chr1.46072819.46073449 AluJo SINE SINE
6306 chr1.46072819.46073449 (ATATAT)n Other Simple_repeat
6307 chr1.46072819.46073449 L2a LINE LINE
6308 chr1.46072819.46073449 ERVL-B4-int LTR LTR
6309 chr1.46084659.46085120 <NA> <NA> <NA>
6310 chr1.46086634.46087126 AluSx1 SINE SINE
6311 chr1.46086634.46087126 HAL1 LINE LINE
6312 chr1.46086634.46087126 L1PA5 LINE LINE
6313 chr1.46086634.46087126 L1PA5 LINE LINE
6314 chr1.46131797.46133605 A-rich Other Low_complexity
6315 chr1.46134840.46135080 AmnSINE1 SINE SINE
6316 chr1.46151747.46152405 MamGyp-int LTR LTR
6317 chr1.46173089.46174193 L2a LINE LINE
6318 chr1.46173089.46174193 (CA)n Other Simple_repeat
6319 chr1.46173089.46174193 (GTGT)n Other Simple_repeat
6320 chr1.46179359.46179989 MIRb SINE SINE
6321 chr1.46179359.46179989 GA-rich Other Low_complexity
6322 chr1.46179359.46179989 GA-rich Other Low_complexity
6323 chr1.46179359.46179989 (GT)n Other Simple_repeat
6324 chr1.46180151.46180496 (GTGCAT)n Other Simple_repeat
6325 chr1.46183115.46183761 <NA> <NA> <NA>
6326 chr1.46191015.46191600 L3 LINE LINE
6327 chr1.46191015.46191600 MIR SINE SINE
6328 chr1.46194845.46195235 MIRb SINE SINE
6329 chr1.46194845.46195235 L2a LINE LINE
6330 chr1.46197815.46198840 MIRc SINE SINE
6331 chr1.46197815.46198840 (CGC)n Other Simple_repeat
6332 chr1.46197815.46198840 (GGC)n Other Simple_repeat
6333 chr1.46203020.46204838 L2c LINE LINE
6334 chr1.46205537.46206052 <NA> <NA> <NA>
6335 chr1.46210822.46211581 AluJb SINE SINE
6336 chr1.46210822.46211581 MER21A LTR LTR
6337 chr1.46210822.46211581 (CA)n Other Simple_repeat
6338 chr1.46210822.46211581 MER21A LTR LTR
6339 chr1.46210822.46211581 MIRb SINE SINE
6340 chr1.46218368.46218884 AluJo SINE SINE
6341 chr1.46218368.46218884 L2 LINE LINE
6342 chr1.46221587.46222319 AluJb SINE SINE
6343 chr1.46223415.46223944 AluJb SINE SINE
6344 chr1.46223415.46223944 (T)n Other Simple_repeat
6345 chr1.46238668.46239415 LTR8 LTR LTR
6346 chr1.46238668.46239415 THE1B LTR LTR
6347 chr1.46238668.46239415 LTR8 LTR LTR
6348 chr1.46246373.46247982 AluJb SINE SINE
6349 chr1.46246373.46247982 LTR26B LTR LTR
6350 chr1.46246373.46247982 MIR SINE SINE
6351 chr1.46246373.46247982 MIRb SINE SINE
6352 chr1.46246373.46247982 (C)n Other Simple_repeat
6353 chr1.46254986.46255527 L2c LINE LINE
6354 chr1.46254986.46255527 AluSx1 SINE SINE
6355 chr1.46259918.46260507 <NA> <NA> <NA>
6356 chr1.46277869.46278300 <NA> <NA> <NA>
6357 chr1.46284636.46285502 L2b LINE LINE
6358 chr1.46285714.46286388 <NA> <NA> <NA>
6359 chr1.46288606.46288812 <NA> <NA> <NA>
6360 chr1.46298462.46298968 L2c LINE LINE
6361 chr1.46301367.46304082 (CCTGG)n Other Simple_repeat
6362 chr1.46308476.46308967 MER74B LTR LTR
6363 chr1.46308476.46308967 AluJo SINE SINE
6364 chr1.46308476.46308967 MER74B LTR LTR
6365 chr1.46333461.46333955 AluSz SINE SINE
6366 chr1.46333461.46333955 MER66-int LTR LTR
6367 chr1.46333461.46333955 MER66C LTR LTR
6368 chr1.46340121.46341338 AluYf1 SINE SINE
6369 chr1.46340121.46341338 Arthur1C DNA DNA
6370 chr1.46340121.46341338 L2b LINE LINE
6371 chr1.46340121.46341338 (CCCTTT)n Other Simple_repeat
6372 chr1.46347928.46348580 AluY SINE SINE
6373 chr1.46347928.46348580 L2c LINE LINE
6374 chr1.46347928.46348580 AluSq2 SINE SINE
6375 chr1.46370183.46370527 L3 LINE LINE
6376 chr1.46370183.46370527 MLT1I LTR LTR
6377 chr1.46372367.46372779 AluY SINE SINE
6378 chr1.46372367.46372779 MSTC-int LTR LTR
6379 chr1.46372367.46372779 AluSz SINE SINE
6380 chr1.46394154.46394878 <NA> <NA> <NA>
6381 chr1.46399167.46399629 <NA> <NA> <NA>
6382 chr1.46402114.46402495 (GTGT)n Other Simple_repeat
6383 chr1.46406117.46406954 AluYm1 SINE SINE
6384 chr1.46413027.46413733 <NA> <NA> <NA>
6385 chr1.46425610.46426206 L2b LINE LINE
6386 chr1.46442258.46443141 MIRb SINE SINE
6387 chr1.46446805.46447172 <NA> <NA> <NA>
6388 chr1.46448329.46448920 (GCCCC)n Other Simple_repeat
6389 chr1.46448329.46448920 (GCCC)n Other Simple_repeat
6390 chr1.46466330.46467512 MIRb SINE SINE
6391 chr1.46466330.46467512 (CCCGC)n Other Simple_repeat
6392 chr1.46466330.46467512 (GCG)n Other Simple_repeat
6393 chr1.46466330.46467512 (GTGTGT)n Other Simple_repeat
6394 chr1.46473854.46474534 MIR SINE SINE
6395 chr1.46477384.46477692 <NA> <NA> <NA>
6396 chr1.46487744.46488010 <NA> <NA> <NA>
6397 chr1.46488696.46490245 (CAGCCACA)n Other Simple_repeat
6398 chr1.46488696.46490245 (GCGGG)n Other Simple_repeat
6399 chr1.46488696.46490245 (GGCCG)n Other Simple_repeat
6400 chr1.46508832.46509132 (C)n Other Simple_repeat
6401 chr1.46508832.46509132 AluSq2 SINE SINE
6402 chr1.46516247.46516780 L3 LINE LINE
6403 chr1.46517135.46517345 <NA> <NA> <NA>
6404 chr1.46520072.46521007 (CA)n Other Simple_repeat
6405 chr1.46520072.46521007 MER45A DNA DNA
6406 chr1.46527912.46528590 L2a LINE LINE
6407 chr1.46532820.46533726 (AAGG)n Other Simple_repeat
6408 chr1.46532820.46533726 (TTTTC)n Other Simple_repeat
6409 chr1.46532820.46533726 G-rich Other Low_complexity
6410 chr1.46535212.46535328 <NA> <NA> <NA>
6411 chr1.46540010.46540349 (GC)n Other Simple_repeat
6412 chr1.46547963.46548272 L3 LINE LINE
6413 chr1.46547963.46548272 MIR SINE SINE
6414 chr1.46556854.46557133 L2c LINE LINE
6415 chr1.46603463.46604520 MIRb SINE SINE
6416 chr1.46613930.46614179 L2c LINE LINE
6417 chr1.46616231.46617212 (CCCGC)n Other Simple_repeat
6418 chr1.46616231.46617212 L2c LINE LINE
6419 chr1.46622584.46622736 <NA> <NA> <NA>
6420 chr1.46623644.46624457 MIRc SINE SINE
6421 chr1.46643220.46643753 <NA> <NA> <NA>
6422 chr1.46667606.46668692 MIRc SINE SINE
6423 chr1.46667606.46668692 MIR SINE SINE
6424 chr1.46667606.46668692 (CCT)n Other Simple_repeat
6425 chr1.46667606.46668692 G-rich Other Low_complexity
6426 chr1.46672627.46673165 <NA> <NA> <NA>
6427 chr1.46673636.46674023 <NA> <NA> <NA>
6428 chr1.46689271.46690089 <NA> <NA> <NA>
6429 chr1.46692112.46693647 L1ME1 LINE LINE
6430 chr1.46718476.46719578 (CTCCGG)n Other Simple_repeat
6431 chr1.46718476.46719578 (GGC)n Other Simple_repeat
6432 chr1.46718476.46719578 L2a LINE LINE
6433 chr1.46725010.46725545 (GT)n Other Simple_repeat
6434 chr1.46725010.46725545 (TG)n Other Simple_repeat
6435 chr1.46735682.46736195 <NA> <NA> <NA>
6436 chr1.46747603.46748307 MIRc SINE SINE
6437 chr1.46747603.46748307 MIRb SINE SINE
6438 chr1.46757267.46758597 MER11D LTR LTR
6439 chr1.46757267.46758597 MamRep1879 DNA DNA
6440 chr1.46767601.46768236 MIR3 SINE SINE
6441 chr1.46767601.46768236 MIRb SINE SINE
6442 chr1.46806683.46806969 <NA> <NA> <NA>
6443 chr1.46934781.46935190 <NA> <NA> <NA>
6444 chr1.46990993.46991347 L1PA7 LINE LINE
6445 chr1.47023385.47024284 (GGAGGGA)n Other Simple_repeat
6446 chr1.47023385.47024284 GA-rich Other Low_complexity
6447 chr1.47147513.47147768 (TGTCCC)n Other Simple_repeat
6448 chr1.47173751.47174160 AluSg SINE SINE
6449 chr1.47175245.47175595 L2b LINE LINE
6450 chr1.47175245.47175595 MIR SINE SINE
6451 chr1.47179140.47179748 L2c LINE LINE
6452 chr1.47191369.47191882 (TG)n Other Simple_repeat
6453 chr1.47191369.47191882 L2 LINE LINE
6454 chr1.47192762.47193363 <NA> <NA> <NA>
6455 chr1.47201298.47201501 MIRb SINE SINE
6456 chr1.47210678.47210949 L2c LINE LINE
6457 chr1.47211616.47212143 <NA> <NA> <NA>
6458 chr1.47224821.47225292 <NA> <NA> <NA>
6459 chr1.47235237.47236172 MIR SINE SINE
6460 chr1.47235237.47236172 MIRb SINE SINE
6461 chr1.47239153.47239581 (TC)n Other Simple_repeat
6462 chr1.47241621.47241964 <NA> <NA> <NA>
6463 chr1.47313425.47314545 L2c LINE LINE
6464 chr1.47333202.47335055 AluJo SINE SINE
6465 chr1.47333202.47335055 L2a LINE LINE
6466 chr1.47333202.47335055 (CCCGC)n Other Simple_repeat
6467 chr1.47388600.47389233 (CA)n Other Simple_repeat
6468 chr1.47409111.47409956 Charlie23a DNA DNA
6469 chr1.47409111.47409956 MIR SINE SINE
6470 chr1.47409111.47409956 (TCAT)n Other Simple_repeat
6471 chr1.47409111.47409956 (GTCA)n Other Simple_repeat
6472 chr1.47416492.47417472 (GGC)n Other Simple_repeat
6473 chr1.47416492.47417472 (CGC)n Other Simple_repeat
6474 chr1.47424154.47424865 MIRb SINE SINE
6475 chr1.47432204.47433022 <NA> <NA> <NA>
6476 chr1.47436562.47436700 MIR SINE SINE
6477 chr1.47437049.47438232 (GCG)n Other Simple_repeat
6478 chr1.47444575.47445279 (GGCGC)n Other Simple_repeat
6479 chr1.47449930.47450766 <NA> <NA> <NA>
6480 chr1.47474676.47474883 <NA> <NA> <NA>
6481 chr1.47487780.47488334 L2b LINE LINE
6482 chr1.47491288.47491829 L2b LINE LINE
6483 chr1.47507871.47509111 G-rich Other Low_complexity
6484 chr1.47507871.47509111 (T)n Other Simple_repeat
6485 chr1.47521185.47521851 MIR SINE SINE
6486 chr1.47521185.47521851 (GTGA)n Other Simple_repeat
6487 chr1.47527751.47528007 GA-rich Other Low_complexity
6488 chr1.47533043.47533600 (CTC)n Other Simple_repeat
6489 chr1.47533043.47533600 GA-rich Other Low_complexity
6490 chr1.47534127.47534844 MIRb SINE SINE
6491 chr1.47534127.47534844 L2c LINE LINE
6492 chr1.47547628.47547971 L2c LINE LINE
6493 chr1.47547628.47547971 L2c LINE LINE
6494 chr1.47551829.47552417 LTR33 LTR LTR
6495 chr1.47561514.47562172 L2b LINE LINE
6496 chr1.47569670.47570297 AluJb SINE SINE
6497 chr1.47569670.47570297 MIRb SINE SINE
6498 chr1.47569670.47570297 L2c LINE LINE
6499 chr1.47588018.47588822 Tigger19b DNA DNA
6500 chr1.47588018.47588822 (GT)n Other Simple_repeat
6501 chr1.47588018.47588822 MIR3 SINE SINE
6502 chr1.47593031.47593500 MER91B DNA DNA
6503 chr1.47627386.47628029 L2c LINE LINE
6504 chr1.47650288.47650727 MER5C1 DNA DNA
6505 chr1.47679301.47679909 MamGypLTR1d LTR LTR
6506 chr1.47679301.47679909 MamGypLTR1d LTR LTR
6507 chr1.47684980.47685562 GA-rich Other Low_complexity
6508 chr1.47686720.47687078 <NA> <NA> <NA>
6509 chr1.47696822.47697551 MIRc SINE SINE
6510 chr1.47708792.47710958 MIRc SINE SINE
6511 chr1.47708792.47710958 MIRc SINE SINE
6512 chr1.47725669.47726681 MIRb SINE SINE
6513 chr1.47725669.47726681 MIR SINE SINE
6514 chr1.47728466.47728659 MER65-int LTR LTR
6515 chr1.47738508.47738922 (AC)n Other Simple_repeat
6516 chr1.47759161.47759515 <NA> <NA> <NA>
6517 chr1.47767473.47768257 MIRb SINE SINE
6518 chr1.47767473.47768257 L2b LINE LINE
6519 chr1.47768524.47768878 MIR SINE SINE
6520 chr1.47768524.47768878 MIRc SINE SINE
6521 chr1.47785440.47785990 MIR SINE SINE
6522 chr1.47796538.47797175 MER91B DNA DNA
6523 chr1.47796538.47797175 MIRb SINE SINE
6524 chr1.47797440.47797944 <NA> <NA> <NA>
6525 chr1.47804100.47804506 <NA> <NA> <NA>
6526 chr1.47822952.47823684 L3 LINE LINE
6527 chr1.47829273.47829721 <NA> <NA> <NA>
6528 chr1.47839330.47839668 (CACA)n Other Simple_repeat
6529 chr1.47840963.47841252 <NA> <NA> <NA>
6530 chr1.47871700.47872389 MIR3 SINE SINE
6531 chr1.47875068.47875335 <NA> <NA> <NA>
6532 chr1.47875920.47876676 MIRc SINE SINE
6533 chr1.47881640.47882297 <NA> <NA> <NA>
6534 chr1.47892073.47892217 L2a LINE LINE
6535 chr1.47892572.47892956 L2a LINE LINE
6536 chr1.47894706.47895182 L2a LINE LINE
6537 chr1.47898269.47898677 MER46C DNA DNA
6538 chr1.47905975.47906807 MIR3 SINE SINE
6539 chr1.47905975.47906807 MIR SINE SINE
6540 chr1.47911382.47911727 <NA> <NA> <NA>
6541 chr1.47914259.47914572 <NA> <NA> <NA>
6542 chr1.47924622.47924974 <NA> <NA> <NA>
6543 chr1.47932847.47933923 MIRb SINE SINE
6544 chr1.47932847.47933923 AluY SINE SINE
6545 chr1.47932847.47933923 L2c LINE LINE
6546 chr1.47932847.47933923 L2c LINE LINE
6547 chr1.47932847.47933923 MER3 DNA DNA
6548 chr1.47934207.47934538 MIRb SINE SINE
6549 chr1.47940456.47940683 MIR SINE SINE
6550 chr1.47940456.47940683 MIR1_Amn SINE SINE
6551 chr1.47942052.47942568 L2b LINE LINE
6552 chr1.47944685.47945023 LTR16B1 LTR LTR
6553 chr1.47944685.47945023 L2c LINE LINE
6554 chr1.47950425.47950750 L2b LINE LINE
6555 chr1.47972873.47973415 L2a LINE LINE
6556 chr1.47972873.47973415 L3 LINE LINE
6557 chr1.47984092.47984617 L2c LINE LINE
6558 chr1.47986615.47987214 L2c LINE LINE
6559 chr1.47996154.47998034 (CGG)n Other Simple_repeat
6560 chr1.47996154.47998034 (GGGCC)n Other Simple_repeat
6561 chr1.47996154.47998034 (CGCT)n Other Simple_repeat
6562 chr1.47996154.47998034 (CCTCC)n Other Simple_repeat
6563 chr1.47999218.47999494 MADE2 DNA DNA
6564 chr1.48006922.48007610 AluSc SINE SINE
6565 chr1.48006922.48007610 L2b LINE LINE
6566 chr1.48006922.48007610 MamSINE1 SINE SINE
6567 chr1.48006922.48007610 MamRTE1 LINE LINE
6568 chr1.48017744.48018198 <NA> <NA> <NA>
6569 chr1.48024963.48025472 MIRb SINE SINE
6570 chr1.48036613.48037172 L3 LINE LINE
6571 chr1.48036613.48037172 L2c LINE LINE
6572 chr1.48039157.48039978 L2b LINE LINE
6573 chr1.48039157.48039978 (A)n Other Simple_repeat
6574 chr1.48043677.48044206 MIR3 SINE SINE
6575 chr1.48048006.48048508 MIR3 SINE SINE
6576 chr1.48048006.48048508 (ATTA)n Other Simple_repeat
6577 chr1.48048006.48048508 L2b LINE LINE
6578 chr1.48048847.48049306 MIRb SINE SINE
6579 chr1.48049762.48050664 L3b LINE LINE
6580 chr1.48049762.48050664 L2b LINE LINE
6581 chr1.48052441.48052902 <NA> <NA> <NA>
6582 chr1.48060964.48061528 <NA> <NA> <NA>
6583 chr1.48068174.48068767 MIRb SINE SINE
6584 chr1.48068174.48068767 L2c LINE LINE
6585 chr1.48069810.48070413 <NA> <NA> <NA>
6586 chr1.48082360.48082535 MIR3 SINE SINE
6587 chr1.48093744.48094277 MER5B DNA DNA
6588 chr1.48093744.48094277 L3 LINE LINE
6589 chr1.48109250.48109935 <NA> <NA> <NA>
6590 chr1.48114915.48115304 L1M1 LINE LINE
6591 chr1.48127866.48128060 L1MA9 LINE LINE
6592 chr1.48202040.48202595 MER3 DNA DNA
6593 chr1.48215220.48215738 L2c LINE LINE
6594 chr1.48217945.48218135 L1MB3 LINE LINE
6595 chr1.48217945.48218135 L1MB3 LINE LINE
6596 chr1.48217945.48218135 MLT1B LTR LTR
6597 chr1.48226994.48227752 (GT)n Other Simple_repeat
6598 chr1.48228257.48228494 MIR SINE SINE
6599 chr1.48236755.48237342 <NA> <NA> <NA>
6600 chr1.48246816.48247156 MIRc SINE SINE
6601 chr1.48414095.48414762 Tigger2b_Pri DNA DNA
6602 chr1.48414095.48414762 L1MCa LINE LINE
6603 chr1.48414095.48414762 L1MCb LINE LINE
6604 chr1.48414095.48414762 L1MCa LINE LINE
6605 chr1.48414095.48414762 L1ME3 LINE LINE
6606 chr1.48471599.48472607 (GGC)n Other Simple_repeat
6607 chr1.48471599.48472607 MIR1_Amn SINE SINE
6608 chr1.48494292.48494835 <NA> <NA> <NA>
6609 chr1.48498194.48498923 MER20B DNA DNA
6610 chr1.48498194.48498923 MamGypLTR3 LTR LTR
6611 chr1.48522308.48522626 MIRb SINE SINE
6612 chr1.48526326.48526607 MIRb SINE SINE
6613 chr1.48526326.48526607 (AGCAGT)n Other Simple_repeat
6614 chr1.48530696.48531229 (TC)n Other Simple_repeat
6615 chr1.48540411.48541108 L2c LINE LINE
6616 chr1.48552544.48553472 MER20 DNA DNA
6617 chr1.48552544.48553472 MIR3 SINE SINE
6618 chr1.48563902.48564664 L2 LINE LINE
6619 chr1.48570038.48570249 <NA> <NA> <NA>
6620 chr1.48570629.48570983 MIRb SINE SINE
6621 chr1.48571158.48571932 MIRb SINE SINE
6622 chr1.48571158.48571932 L4_B_Mam LINE LINE
6623 chr1.48572655.48573093 (CTGCCC)n Other Simple_repeat
6624 chr1.48596002.48596371 MIRc SINE SINE
6625 chr1.48610805.48611438 <NA> <NA> <NA>
6626 chr1.48619460.48619932 MIRb SINE SINE
6627 chr1.48641028.48641658 MIRb SINE SINE
6628 chr1.48641028.48641658 L2b LINE LINE
6629 chr1.48644336.48644531 L2b LINE LINE
6630 chr1.48654243.48655007 L2b LINE LINE
6631 chr1.48674743.48674927 MIR SINE SINE
6632 chr1.48674743.48674927 L2c LINE LINE
6633 chr1.48676641.48677755 MER5B DNA DNA
6634 chr1.48676641.48677755 MIR3 SINE SINE
6635 chr1.48676641.48677755 (AGGGA)n Other Simple_repeat
6636 chr1.48676641.48677755 MIRb SINE SINE
6637 chr1.48676641.48677755 Tigger15a DNA DNA
6638 chr1.48678012.48678229 <NA> <NA> <NA>
6639 chr1.48688316.48688658 <NA> <NA> <NA>
6640 chr1.48697021.48697382 MIRc SINE SINE
6641 chr1.48708771.48709309 MIR3 SINE SINE
6642 chr1.48775867.48776286 <NA> <NA> <NA>
6643 chr1.48776469.48777146 <NA> <NA> <NA>
6644 chr1.48777597.48777867 <NA> <NA> <NA>
6645 chr1.48794792.48795076 L2 LINE LINE
6646 chr1.48817587.48818000 <NA> <NA> <NA>
6647 chr1.48853048.48853329 MLT1F LTR LTR
6648 chr1.48878307.48878909 MIR3 SINE SINE
6649 chr1.48878307.48878909 MIRc SINE SINE
6650 chr1.48878307.48878909 L2b LINE LINE
6651 chr1.48916214.48916772 (AC)n Other Simple_repeat
6652 chr1.48917833.48918142 MIRb SINE SINE
6653 chr1.48931409.48932019 L2a LINE LINE
6654 chr1.48931409.48932019 AluJb SINE SINE
6655 chr1.48931409.48932019 L2a LINE LINE
6656 chr1.49333922.49334296 MIRc SINE SINE
6657 chr1.50023396.50024272 (GGCGGCA)n Other Simple_repeat
6658 chr1.50023396.50024272 G-rich Other Low_complexity
6659 chr1.50060386.50060723 <NA> <NA> <NA>
6660 chr1.50128568.50128966 L2c LINE LINE
6661 chr1.50128568.50128966 MIRb SINE SINE
6662 chr1.50137896.50138183 MIRb SINE SINE
6663 chr1.50176319.50176555 MIRb SINE SINE
6664 chr1.50180925.50181632 MIRb SINE SINE
6665 chr1.50180925.50181632 MIRb SINE SINE
6666 chr1.50192011.50192688 (CA)n Other Simple_repeat
6667 chr1.50271739.50272455 MIRc SINE SINE
6668 chr1.50279908.50280230 L2b LINE LINE
6669 chr1.50308773.50309333 MIR3 SINE SINE
6670 chr1.50332940.50334028 (CCCCAC)n Other Simple_repeat
6671 chr1.50332940.50334028 (CCAGAA)n Other Simple_repeat
6672 chr1.50332940.50334028 MIRc SINE SINE
6673 chr1.50332940.50334028 MIR SINE SINE
6674 chr1.50348431.50349271 MIRb SINE SINE
6675 chr1.50348431.50349271 L2b LINE LINE
6676 chr1.50368358.50369288 MIR SINE SINE
6677 chr1.50368358.50369288 (GAT)n Other Simple_repeat
6678 chr1.50371569.50372067 MLT1C LTR LTR
6679 chr1.50418656.50419647 (CGG)n Other Simple_repeat
6680 chr1.50422949.50423586 <NA> <NA> <NA>
6681 chr1.50425785.50426203 <NA> <NA> <NA>
6682 chr1.50427584.50428202 MIRb SINE SINE
6683 chr1.50427584.50428202 MIRb SINE SINE
6684 chr1.50430550.50431191 (AC)n Other Simple_repeat
6685 chr1.50444251.50444605 L3 LINE LINE
6686 chr1.50474935.50475280 L3 LINE LINE
6687 chr1.50572426.50572800 L1MC4 LINE LINE
6688 chr1.50572426.50572800 MIR SINE SINE
6689 chr1.50588682.50589264 <NA> <NA> <NA>
6690 chr1.50591611.50591940 AluSx1 SINE SINE
6691 chr1.50591611.50591940 L2c LINE LINE
6692 chr1.50603314.50604249 MIRb SINE SINE
6693 chr1.50620697.50621326 L1PA16 LINE LINE
6694 chr1.50633405.50633692 <NA> <NA> <NA>
6695 chr1.50635100.50635896 AluJb SINE SINE
6696 chr1.50658491.50658929 <NA> <NA> <NA>
6697 chr1.50697850.50698323 (TG)n Other Simple_repeat
6698 chr1.50705129.50705367 <NA> <NA> <NA>
6699 chr1.50705717.50706075 <NA> <NA> <NA>
6700 chr1.50720398.50720912 MER34C2 LTR LTR
6701 chr1.50829148.50829612 L1M5 LINE LINE
6702 chr1.50873315.50874030 Tigger1 DNA DNA
6703 chr1.50873315.50874030 MER66A LTR LTR
6704 chr1.50873315.50874030 MER66C LTR LTR
6705 chr1.50897979.50898394 MLT1H LTR LTR
6706 chr1.50897979.50898394 FAM SINE SINE
6707 chr1.50931307.50931842 THE1A LTR LTR
6708 chr1.50931307.50931842 AluY SINE SINE
6709 chr1.50959301.50960784 (CA)n Other Simple_repeat
6710 chr1.50959301.50960784 (CCG)n Other Simple_repeat
6711 chr1.50959301.50960784 (CGAG)n Other Simple_repeat
6712 chr1.50959301.50960784 (CGC)n Other Simple_repeat
6713 chr1.50968098.50970258 G-rich Other Low_complexity
6714 chr1.50977075.50977466 <NA> <NA> <NA>
6715 chr1.50977568.50978477 G-rich Other Low_complexity
6716 chr1.51061212.51061773 MSTB1 LTR LTR
6717 chr1.51061212.51061773 L1M4 LINE LINE
6718 chr1.51063215.51063702 L1M4 LINE LINE
6719 chr1.51063215.51063702 (ATAC)n Other Simple_repeat
6720 chr1.51063215.51063702 (TG)n Other Simple_repeat
6721 chr1.51070640.51071010 <NA> <NA> <NA>
6722 chr1.51192168.51192609 L2 LINE LINE
6723 chr1.51192168.51192609 (TATT)n Other Simple_repeat
6724 chr1.51192168.51192609 MER20 DNA DNA
6725 chr1.51192168.51192609 L2-3_Crp LINE LINE
6726 chr1.51235146.51235347 L2b LINE LINE
6727 chr1.51235870.51237311 (GCA)n Other Simple_repeat
6728 chr1.51261259.51261899 Charlie4 DNA DNA
6729 chr1.51261259.51261899 AluSx3 SINE SINE
6730 chr1.51261259.51261899 AluYh3 SINE SINE
6731 chr1.51264451.51264973 MIR3 SINE SINE
6732 chr1.51265640.51266066 AluSz6 SINE SINE
6733 chr1.51265640.51266066 MIRb SINE SINE
6734 chr1.51278686.51279237 AluSc SINE SINE
6735 chr1.51278686.51279237 L2b LINE LINE
6736 chr1.51278686.51279237 Tigger3b DNA DNA
6737 chr1.51284208.51285063 <NA> <NA> <NA>
6738 chr1.51295960.51297268 AluSz SINE SINE
6739 chr1.51313702.51314706 L2c LINE LINE
6740 chr1.51313702.51314706 FLAM_C SINE SINE
6741 chr1.51313702.51314706 L2c LINE LINE
6742 chr1.51313702.51314706 MIRb SINE SINE
6743 chr1.51313702.51314706 MIRb SINE SINE
6744 chr1.51326012.51327139 L2b LINE LINE
6745 chr1.51331271.51331699 L3 LINE LINE
6746 chr1.51344537.51345663 (CGG)n Other Simple_repeat
6747 chr1.51344537.51345663 Charlie16a DNA DNA
6748 chr1.51410192.51411448 AluJb SINE SINE
6749 chr1.51410192.51411448 L1M5 LINE LINE
6750 chr1.51410192.51411448 MIR SINE SINE
6751 chr1.51410192.51411448 Charlie23a DNA DNA
6752 chr1.51416119.51416402 <NA> <NA> <NA>
6753 chr1.51417521.51418001 <NA> <NA> <NA>
6754 chr1.51418357.51418789 MIRb SINE SINE
6755 chr1.51421914.51422236 <NA> <NA> <NA>
6756 chr1.51423156.51423860 <NA> <NA> <NA>
6757 chr1.51429725.51430450 AluSx1 SINE SINE
6758 chr1.51429725.51430450 AluSz SINE SINE
6759 chr1.51442169.51442558 <NA> <NA> <NA>
6760 chr1.51488535.51489034 MIR SINE SINE
6761 chr1.51488535.51489034 AluJo SINE SINE
6762 chr1.51488535.51489034 MLT1J LTR LTR
6763 chr1.51517891.51519485 G-rich Other Low_complexity
6764 chr1.51517891.51519485 (CCCG)n Other Simple_repeat
6765 chr1.51520227.51520843 L2b LINE LINE
6766 chr1.51520227.51520843 L2c LINE LINE
6767 chr1.51554011.51554205 AluJr SINE SINE
6768 chr1.51554011.51554205 (TACATA)n Other Simple_repeat
6769 chr1.51554011.51554205 (AG)n Other Simple_repeat
6770 chr1.51558153.51558776 AluY SINE SINE
6771 chr1.51558153.51558776 LTR8 LTR LTR
6772 chr1.51559073.51559658 (TC)n Other Simple_repeat
6773 chr1.51559073.51559658 (AC)n Other Simple_repeat
6774 chr1.51559073.51559658 MER5A1 DNA DNA
6775 chr1.51564019.51564596 AluJr4 SINE SINE
6776 chr1.51564019.51564596 (GAAAA)n Other Simple_repeat
6777 chr1.51569487.51570876 MIRb SINE SINE
6778 chr1.51569487.51570876 MIR SINE SINE
6779 chr1.51569487.51570876 MIR3 SINE SINE
6780 chr1.51569487.51570876 MIRc SINE SINE
6781 chr1.51569487.51570876 AluSx1 SINE SINE
6782 chr1.51572351.51572695 MIRc SINE SINE
6783 chr1.51572351.51572695 MIR SINE SINE
6784 chr1.51583490.51584079 MIRb SINE SINE
6785 chr1.51583490.51584079 (CA)n Other Simple_repeat
6786 chr1.51583490.51584079 FLAM_A SINE SINE
6787 chr1.51612414.51612723 MIRb SINE SINE
6788 chr1.51612414.51612723 MamRTE1 LINE LINE
6789 chr1.51616916.51617975 <NA> <NA> <NA>
6790 chr1.51622352.51623367 L2b LINE LINE
6791 chr1.51622352.51623367 MLT1F1 LTR LTR
6792 chr1.51622352.51623367 L2b LINE LINE
6793 chr1.51636918.51637687 MIR SINE SINE
6794 chr1.51636918.51637687 AluSq SINE SINE
6795 chr1.51636918.51637687 MIR SINE SINE
6796 chr1.51636918.51637687 MamRep605 Other LTR?
6797 chr1.51644590.51644924 AluSx SINE SINE
6798 chr1.51644590.51644924 L2c LINE LINE
6799 chr1.51644590.51644924 L2a LINE LINE
6800 chr1.51644590.51644924 MSTD LTR LTR
6801 chr1.51648240.51648816 MIR1_Amn SINE SINE
6802 chr1.51653268.51653408 <NA> <NA> <NA>
6803 chr1.51660773.51661562 L2c LINE LINE
6804 chr1.51660773.51661562 MIRc SINE SINE
6805 chr1.51664558.51665241 AluSz6 SINE SINE
6806 chr1.51664558.51665241 L1ME3A LINE LINE
6807 chr1.51664558.51665241 MIRb SINE SINE
6808 chr1.51664558.51665241 MER3 DNA DNA
6809 chr1.51664558.51665241 AluSp SINE SINE
6810 chr1.51666516.51666959 MER3 DNA DNA
6811 chr1.51666516.51666959 L2 LINE LINE
6812 chr1.51671625.51672280 L2a LINE LINE
6813 chr1.51671625.51672280 L2a LINE LINE
6814 chr1.51688759.51688987 <NA> <NA> <NA>
6815 chr1.51690826.51691399 Tigger3b DNA DNA
6816 chr1.51690826.51691399 AluSg SINE SINE
6817 chr1.51693324.51694051 AluJo SINE SINE
6818 chr1.51693324.51694051 L2a LINE LINE
6819 chr1.51693324.51694051 Charlie1a DNA DNA
6820 chr1.51729136.51730214 G-rich Other Low_complexity
6821 chr1.51750822.51751358 AluSg SINE SINE
6822 chr1.51754019.51754228 <NA> <NA> <NA>
6823 chr1.51768821.51769512 Charlie8 DNA DNA
6824 chr1.51768821.51769512 MIRb SINE SINE
6825 chr1.51784223.51784386 <NA> <NA> <NA>
6826 chr1.51784936.51785743 L2b LINE LINE
6827 chr1.51792987.51793165 <NA> <NA> <NA>
6828 chr1.51799346.51800071 L1PA6 LINE LINE
6829 chr1.51799346.51800071 Zaphod2 DNA DNA
6830 chr1.51799346.51800071 Tigger15a DNA DNA
6831 chr1.51799346.51800071 AluJo SINE SINE
6832 chr1.51812944.51813680 AluSx3 SINE SINE
6833 chr1.51812944.51813680 FLAM_C SINE SINE
6834 chr1.51812944.51813680 (ATATTA)n Other Simple_repeat
6835 chr1.51812944.51813680 MIR3 SINE SINE
6836 chr1.51812944.51813680 FLAM_C SINE SINE
6837 chr1.51829114.51829353 AluJb SINE SINE
6838 chr1.51877988.51879409 L3 LINE LINE
6839 chr1.51877988.51879409 (CCCTCCG)n Other Simple_repeat
6840 chr1.51896912.51898763 MIRb SINE SINE
6841 chr1.51896912.51898763 (GTTT)n Other Simple_repeat
6842 chr1.51896912.51898763 AluJb SINE SINE
6843 chr1.51896912.51898763 AluSc SINE SINE
6844 chr1.51896912.51898763 L2c LINE LINE
6845 chr1.51924133.51924816 L2c LINE LINE
6846 chr1.51926272.51926443 L2b LINE LINE
6847 chr1.51926272.51926443 MLT1I LTR LTR
6848 chr1.51946229.51946652 L2b LINE LINE
6849 chr1.51946229.51946652 MIR SINE SINE
6850 chr1.51955471.51956090 AluSz SINE SINE
6851 chr1.51955471.51956090 MIR3 SINE SINE
6852 chr1.51957312.51957884 MIRb SINE SINE
6853 chr1.51966523.51967107 MIR3 SINE SINE
6854 chr1.51966523.51967107 AluSq2 SINE SINE
6855 chr1.51969118.51969873 AluJb SINE SINE
6856 chr1.51969118.51969873 LTR79 LTR LTR
6857 chr1.51969118.51969873 MIRb SINE SINE
6858 chr1.51970368.51970751 AluY SINE SINE
6859 chr1.51978818.51979233 <NA> <NA> <NA>
6860 chr1.51990379.51991155 G-rich Other Low_complexity
6861 chr1.51990379.51991155 L2 LINE LINE
6862 chr1.52002053.52002600 AluJo SINE SINE
6863 chr1.52002053.52002600 MIRb SINE SINE
6864 chr1.52005336.52005952 AluSc5 SINE SINE
6865 chr1.52005336.52005952 LTR61 LTR LTR
6866 chr1.52006301.52006842 LTR5_Hs LTR LTR
6867 chr1.52032478.52033998 <NA> <NA> <NA>
6868 chr1.52054720.52056970 (CCG)n Other Simple_repeat
6869 chr1.52127321.52127815 MIRb SINE SINE
6870 chr1.52139881.52140476 MIR SINE SINE
6871 chr1.52141755.52143040 (AGC)n Other Simple_repeat
6872 chr1.52153883.52154361 ERV3-16A3_I-int LTR LTR
6873 chr1.52159300.52159741 ERV3-16A3_I-int LTR LTR
6874 chr1.52159300.52159741 ERV3-16A3_LTR LTR LTR
6875 chr1.52203971.52204534 L1MC1 LINE LINE
6876 chr1.52203971.52204534 AluSz SINE SINE
6877 chr1.52206818.52207162 AluSx1 SINE SINE
6878 chr1.52206818.52207162 MLT2B1 LTR LTR
6879 chr1.52206818.52207162 (TATG)n Other Simple_repeat
6880 chr1.52206818.52207162 MLT2B1 LTR LTR
6881 chr1.52296114.52296549 (TA)n Other Simple_repeat
6882 chr1.52296114.52296549 MIRb SINE SINE
6883 chr1.52296114.52296549 L1M4a2 LINE LINE
6884 chr1.52305386.52307198 AluSq2 SINE SINE
6885 chr1.52305386.52307198 MER52A LTR LTR
6886 chr1.52305386.52307198 MamRTE1 LINE LINE
6887 chr1.52348736.52349136 <NA> <NA> <NA>
6888 chr1.52365081.52366730 MER3 DNA DNA
6889 chr1.52365081.52366730 L2b LINE LINE
6890 chr1.52365081.52366730 (CCGCG)n Other Simple_repeat
6891 chr1.52365081.52366730 (CTCG)n Other Simple_repeat
6892 chr1.52368489.52369119 <NA> <NA> <NA>
6893 chr1.52386363.52386888 AluJb SINE SINE
6894 chr1.52403695.52405209 MIRc SINE SINE
6895 chr1.52403695.52405209 L2a LINE LINE
6896 chr1.52403695.52405209 L2a LINE LINE
6897 chr1.52414154.52414522 MLT1H LTR LTR
6898 chr1.52423937.52424562 <NA> <NA> <NA>
6899 chr1.52435173.52435463 <NA> <NA> <NA>
6900 chr1.52482307.52482730 L1ME4a LINE LINE
6901 chr1.52482307.52482730 AluJb SINE SINE
6902 chr1.52517225.52517661 L2c LINE LINE
6903 chr1.52517225.52517661 L3 LINE LINE
6904 chr1.52552189.52553922 (CCGCCG)n Other Simple_repeat
6905 chr1.52552189.52553922 G-rich Other Low_complexity
6906 chr1.52574561.52574941 MIRb SINE SINE
6907 chr1.52574561.52574941 L2c LINE LINE
6908 chr1.52592745.52593248 MIR3 SINE SINE
6909 chr1.52592745.52593248 MIR3 SINE SINE
6910 chr1.52592745.52593248 L2c LINE LINE
6911 chr1.52602353.52602767 (GGCTGC)n Other Simple_repeat
6912 chr1.52603912.52604514 L2a LINE LINE
6913 chr1.52603912.52604514 MIR SINE SINE
6914 chr1.52603912.52604514 L2b LINE LINE
6915 chr1.52631761.52632220 L2b LINE LINE
6916 chr1.52632434.52633658 MIRb SINE SINE
6917 chr1.52636756.52637349 MIRb SINE SINE
6918 chr1.52636756.52637349 L2b LINE LINE
6919 chr1.52658724.52660738 (TGTGTG)n Other Simple_repeat
6920 chr1.52658724.52660738 AluJr4 SINE SINE
6921 chr1.52658724.52660738 L2b LINE LINE
6922 chr1.52658724.52660738 MER5A DNA DNA
6923 chr1.52662709.52663146 L2b LINE LINE
6924 chr1.52669626.52670157 AluSz6 SINE SINE
6925 chr1.52669626.52670157 Charlie4z DNA DNA
6926 chr1.52673064.52673316 MIRc SINE SINE
6927 chr1.52674812.52675267 L3 LINE LINE
6928 chr1.52674812.52675267 MER45A DNA DNA
6929 chr1.52676330.52676819 MIRb SINE SINE
6930 chr1.52676330.52676819 MIR SINE SINE
6931 chr1.52686135.52686673 AluSz SINE SINE
6932 chr1.52686135.52686673 AluY SINE SINE
6933 chr1.52697618.52698884 AluY SINE SINE
6934 chr1.52697618.52698884 L2a LINE LINE
6935 chr1.52697618.52698884 (GGCGG)n Other Simple_repeat
6936 chr1.52697618.52698884 L2c LINE LINE
6937 chr1.52697618.52698884 L2c LINE LINE
6938 chr1.52702924.52703739 MIRb SINE SINE
6939 chr1.52702924.52703739 MIR3 SINE SINE
6940 chr1.52702924.52703739 AluSc8 SINE SINE
6941 chr1.52708164.52708792 FAM SINE SINE
6942 chr1.52708164.52708792 L2c LINE LINE
6943 chr1.52708164.52708792 AluSx SINE SINE
6944 chr1.52709108.52709439 <NA> <NA> <NA>
6945 chr1.52726297.52727441 (GGCTGC)n Other Simple_repeat
6946 chr1.52744182.52744627 AluSz SINE SINE
6947 chr1.52744182.52744627 Tigger3 DNA DNA
6948 chr1.52744182.52744627 Tigger3d DNA DNA
6949 chr1.52744182.52744627 MIR SINE SINE
6950 chr1.52744182.52744627 AluSc8 SINE SINE
6951 chr1.52750775.52751518 L1MB8 LINE LINE
6952 chr1.52750775.52751518 AluJb SINE SINE
6953 chr1.52750775.52751518 L1MB8 LINE LINE
6954 chr1.52750775.52751518 AluSz SINE SINE
6955 chr1.52751582.52752078 AluSz SINE SINE
6956 chr1.52751582.52752078 MER21C LTR LTR
6957 chr1.52751582.52752078 MER21C LTR LTR
6958 chr1.52752189.52752921 MER21C LTR LTR
6959 chr1.52752189.52752921 MER21C LTR LTR
6960 chr1.52752189.52752921 AluSg SINE SINE
6961 chr1.52791995.52792395 MER58A DNA DNA
6962 chr1.52791995.52792395 (ATGA)n Other Simple_repeat
6963 chr1.52791995.52792395 MIR SINE SINE
6964 chr1.52803798.52804278 AluJb SINE SINE
6965 chr1.52803798.52804278 AluJo SINE SINE
6966 chr1.52814524.52814888 L2a LINE LINE
6967 chr1.52814524.52814888 AluJr SINE SINE
6968 chr1.52814524.52814888 (AC)n Other Simple_repeat
6969 chr1.52814524.52814888 AluSz SINE SINE
6970 chr1.52833417.52833986 AluY SINE SINE
6971 chr1.52833417.52833986 MER41-int LTR LTR
6972 chr1.52833417.52833986 AluSx3 SINE SINE
6973 chr1.52842469.52843664 (AT)n Other Simple_repeat
6974 chr1.52842469.52843664 (GTCCC)n Other Simple_repeat
6975 chr1.52868813.52869518 (TTATT)n Other Simple_repeat
6976 chr1.52868813.52869518 AluSg SINE SINE
6977 chr1.52868813.52869518 L1ME4b LINE LINE
6978 chr1.52868813.52869518 L1M4 LINE LINE
6979 chr1.52868813.52869518 SVA_D Retroposon Retroposon
6980 chr1.52904988.52905870 <NA> <NA> <NA>
6981 chr1.52906322.52906523 <NA> <NA> <NA>
6982 chr1.52907634.52907793 <NA> <NA> <NA>
6983 chr1.52921115.52922057 MIRb SINE SINE
6984 chr1.52926922.52928265 L2c LINE LINE
6985 chr1.52947033.52947233 AluSx1 SINE SINE
6986 chr1.52947033.52947233 AluJr SINE SINE
6987 chr1.53011248.53011822 MER21C LTR LTR
6988 chr1.53014744.53015638 <NA> <NA> <NA>
6989 chr1.53016605.53016982 L2b LINE LINE
6990 chr1.53025049.53025924 L2a LINE LINE
6991 chr1.53032401.53032781 L2c LINE LINE
6992 chr1.53046980.53047370 MLT1E1A LTR LTR
6993 chr1.53047719.53048592 L2b LINE LINE
6994 chr1.53047719.53048592 L2b LINE LINE
6995 chr1.53049066.53049385 <NA> <NA> <NA>
6996 chr1.53061993.53063765 MIR3 SINE SINE
6997 chr1.53086595.53087076 <NA> <NA> <NA>
6998 chr1.53094144.53095382 L2b LINE LINE
6999 chr1.53094144.53095382 MIRb SINE SINE
7000 chr1.53104387.53104782 L2b LINE LINE
7001 chr1.53104387.53104782 L2b LINE LINE
7002 chr1.53108994.53109539 <NA> <NA> <NA>
7003 chr1.53112509.53113047 LTR78 LTR LTR
7004 chr1.53112509.53113047 LTR78 LTR LTR
7005 chr1.53112509.53113047 LTR78 LTR LTR
7006 chr1.53115743.53116666 L2b LINE LINE
7007 chr1.53122295.53123405 L3 LINE LINE
7008 chr1.53135449.53136079 MER53 DNA DNA
7009 chr1.53135449.53136079 MIR3 SINE SINE
7010 chr1.53145758.53146866 Helitron3Na_Mam Other RC
7011 chr1.53145758.53146866 L2b LINE LINE
7012 chr1.53145758.53146866 MER3 DNA DNA
7013 chr1.53145758.53146866 AluJb SINE SINE
7014 chr1.53176354.53177084 <NA> <NA> <NA>
7015 chr1.53182104.53182549 <NA> <NA> <NA>
7016 chr1.53185478.53186049 LTR13_ LTR LTR
7017 chr1.53186547.53186774 <NA> <NA> <NA>
7018 chr1.53196539.53197671 MIRb SINE SINE
7019 chr1.53219839.53221002 L1M1 LINE LINE
7020 chr1.53219839.53221002 (GGCCGG)n Other Simple_repeat
7021 chr1.53237825.53238962 L2a LINE LINE
7022 chr1.53237825.53238962 MIR1_Amn SINE SINE
7023 chr1.53249634.53250144 L2c LINE LINE
7024 chr1.53249634.53250144 L2c LINE LINE
7025 chr1.53253994.53254497 L2c LINE LINE
7026 chr1.53253994.53254497 L2c LINE LINE
7027 chr1.53256900.53257725 MIRc SINE SINE
7028 chr1.53256900.53257725 L2c LINE LINE
7029 chr1.53256900.53257725 Tigger13a DNA DNA
7030 chr1.53260725.53261033 <NA> <NA> <NA>
7031 chr1.53265653.53265886 <NA> <NA> <NA>
7032 chr1.53266130.53266432 <NA> <NA> <NA>
7033 chr1.53277319.53277744 L2b LINE LINE
7034 chr1.53278151.53278683 MIR3 SINE SINE
7035 chr1.53278151.53278683 MamRep564 Other Unknown
7036 chr1.53284590.53285058 MIR3 SINE SINE
7037 chr1.53288117.53288621 MIRc SINE SINE
7038 chr1.53288117.53288621 (CTCTTT)n Other Simple_repeat
7039 chr1.53294420.53294992 MIRb SINE SINE
7040 chr1.53294420.53294992 MIR3 SINE SINE
7041 chr1.53308440.53308931 MIRb SINE SINE
7042 chr1.53319331.53320036 MIRc SINE SINE
7043 chr1.53325943.53327856 G-rich Other Low_complexity
7044 chr1.53325943.53327856 (GCA)n Other Simple_repeat
7045 chr1.53328050.53328438 (CCT)n Other Simple_repeat
7046 chr1.53328050.53328438 L2c LINE LINE
7047 chr1.53343789.53344323 MIRb SINE SINE
7048 chr1.53343789.53344323 MIRb SINE SINE
7049 chr1.53348154.53349115 (AC)n Other Simple_repeat
7050 chr1.53348154.53349115 MER113 DNA DNA
7051 chr1.53348154.53349115 L1MC3 LINE LINE
7052 chr1.53348154.53349115 G-rich Other Low_complexity
7053 chr1.53348154.53349115 LTR33 LTR LTR
7054 chr1.53348154.53349115 MIRc SINE SINE
7055 chr1.53365564.53366049 MLT1D LTR LTR
7056 chr1.53368692.53369499 MIR SINE SINE
7057 chr1.53368692.53369499 MIRc SINE SINE
7058 chr1.53377509.53377775 <NA> <NA> <NA>
7059 chr1.53380123.53380552 L2b LINE LINE
7060 chr1.53380123.53380552 (GATG)n Other Simple_repeat
7061 chr1.53393256.53394173 MIRc SINE SINE
7062 chr1.53393256.53394173 (GT)n Other Simple_repeat
7063 chr1.53410171.53410401 <NA> <NA> <NA>
7064 chr1.53413147.53414031 L2a LINE LINE
7065 chr1.53413147.53414031 L2b LINE LINE
7066 chr1.53438298.53439560 <NA> <NA> <NA>
7067 chr1.53444664.53444953 LTR13 LTR LTR
7068 chr1.53448384.53449479 MER21C LTR LTR
7069 chr1.53448384.53449479 MIRb SINE SINE
7070 chr1.53448384.53449479 LTR7 LTR LTR
7071 chr1.53452245.53452520 MIRb SINE SINE
7072 chr1.53452245.53452520 MIR SINE SINE
7073 chr1.53460856.53461494 L2b LINE LINE
7074 chr1.53462677.53463307 MIRc SINE SINE
7075 chr1.53470048.53470563 AluSz SINE SINE
7076 chr1.53470048.53470563 L2b LINE LINE
7077 chr1.53485372.53486221 <NA> <NA> <NA>
7078 chr1.53500109.53500644 L2b LINE LINE
7079 chr1.53503041.53503476 <NA> <NA> <NA>
7080 chr1.53512495.53512929 <NA> <NA> <NA>
7081 chr1.53519491.53519869 MIRc SINE SINE
7082 chr1.53524777.53525262 MIR3 SINE SINE
7083 chr1.53525636.53526182 <NA> <NA> <NA>
7084 chr1.53539252.53540090 (AC)n Other Simple_repeat
7085 chr1.53539252.53540090 L2b LINE LINE
7086 chr1.53549323.53549567 L1MB8 LINE LINE
7087 chr1.53557051.53557561 MIR SINE SINE
7088 chr1.53572331.53573002 MIRb SINE SINE
7089 chr1.53572331.53573002 L2b LINE LINE
7090 chr1.53593965.53594405 <NA> <NA> <NA>
7091 chr1.53619921.53620422 MIR3 SINE SINE
7092 chr1.53658970.53659352 L3 LINE LINE
7093 chr1.53669515.53670167 L2b LINE LINE
7094 chr1.53669515.53670167 L2b LINE LINE
7095 chr1.53682121.53682380 L2b LINE LINE
7096 chr1.53685226.53685451 <NA> <NA> <NA>
7097 chr1.53685619.53686157 L2b LINE LINE
7098 chr1.53702129.53703060 MIR SINE SINE
7099 chr1.53702129.53703060 MIRb SINE SINE
7100 chr1.53715406.53715993 L2a LINE LINE
7101 chr1.53715406.53715993 L2a LINE LINE
7102 chr1.53715406.53715993 L2a LINE LINE
7103 chr1.53725166.53725675 L2b LINE LINE
7104 chr1.53738396.53739620 (GCAGCCGCC)n Other Simple_repeat
7105 chr1.53754669.53754967 <NA> <NA> <NA>
7106 chr1.53837707.53838740 <NA> <NA> <NA>
7107 chr1.53860814.53861382 <NA> <NA> <NA>
7108 chr1.53889381.53890266 MIRb SINE SINE
7109 chr1.53898940.53899467 MIR3 SINE SINE
7110 chr1.53898940.53899467 (CA)n Other Simple_repeat
7111 chr1.53909975.53910382 <NA> <NA> <NA>
7112 chr1.53913422.53913944 MLT1B LTR LTR
7113 chr1.53919349.53919634 MLT1H LTR LTR
7114 chr1.53945392.53946598 (GCCCC)n Other Simple_repeat
7115 chr1.53957001.53957688 <NA> <NA> <NA>
7116 chr1.53964023.53964402 <NA> <NA> <NA>
7117 chr1.53982285.53982956 MLT1A LTR LTR
7118 chr1.53982285.53982956 L1MEc LINE LINE
7119 chr1.53991946.53992683 MER52A LTR LTR
7120 chr1.54018088.54018361 MIRb SINE SINE
7121 chr1.54028154.54028738 L2b LINE LINE
7122 chr1.54037573.54037963 <NA> <NA> <NA>
7123 chr1.54052202.54053986 L2c LINE LINE
7124 chr1.54069710.54070355 L2c LINE LINE
7125 chr1.54069710.54070355 (GTATAT)n Other Simple_repeat
7126 chr1.54078841.54079072 L2 LINE LINE
7127 chr1.54081432.54082086 AluJo SINE SINE
7128 chr1.54081432.54082086 (TTA)n Other Simple_repeat
7129 chr1.54081432.54082086 MIR SINE SINE
7130 chr1.54109659.54109980 L2c LINE LINE
7131 chr1.54118681.54119096 L2 LINE LINE
7132 chr1.54121436.54122076 (CA)n Other Simple_repeat
7133 chr1.54135543.54135782 <NA> <NA> <NA>
7134 chr1.54137615.54138014 (TG)n Other Simple_repeat
7135 chr1.54153723.54154193 L2b LINE LINE
7136 chr1.54153723.54154193 L2b LINE LINE
7137 chr1.54153723.54154193 MIRb SINE SINE
7138 chr1.54160317.54160944 MIRb SINE SINE
7139 chr1.54167830.54168185 <NA> <NA> <NA>
7140 chr1.54181637.54182064 AluJb SINE SINE
7141 chr1.54199588.54201049 L2a LINE LINE
7142 chr1.54199588.54201049 MIRb SINE SINE
7143 chr1.54199588.54201049 MIRb SINE SINE
7144 chr1.54199588.54201049 MIR3 SINE SINE
7145 chr1.54207645.54208224 <NA> <NA> <NA>
7146 chr1.54212382.54213182 MIRb SINE SINE
7147 chr1.54219980.54220798 L1MC5a LINE LINE
7148 chr1.54219980.54220798 MIRc SINE SINE
7149 chr1.54227314.54227666 AluJb SINE SINE
7150 chr1.54228828.54229855 MIR SINE SINE
7151 chr1.54246196.54246940 L3 LINE LINE
7152 chr1.54246196.54246940 MIR3 SINE SINE
7153 chr1.54249890.54250126 MIR SINE SINE
7154 chr1.54253536.54253897 <NA> <NA> <NA>
7155 chr1.54272982.54273469 <NA> <NA> <NA>
7156 chr1.54273532.54274090 MIR3 SINE SINE
7157 chr1.54276718.54276979 L2c LINE LINE
7158 chr1.54276718.54276979 L2c LINE LINE
7159 chr1.54279052.54279636 <NA> <NA> <NA>
7160 chr1.54287309.54288195 L3 LINE LINE
7161 chr1.54298541.54298825 <NA> <NA> <NA>
7162 chr1.54299923.54300199 <NA> <NA> <NA>
7163 chr1.54304684.54305117 (ACC)n Other Simple_repeat
7164 chr1.54306020.54306539 <NA> <NA> <NA>
7165 chr1.54311089.54311558 MIRc SINE SINE
7166 chr1.54312704.54313190 (T)n Other Simple_repeat
7167 chr1.54324067.54324598 MIRb SINE SINE
7168 chr1.54327644.54328536 MIR3 SINE SINE
7169 chr1.54335746.54336049 MIR3 SINE SINE
7170 chr1.54336892.54337097 <NA> <NA> <NA>
7171 chr1.54340423.54341071 MIRb SINE SINE
7172 chr1.54342424.54342938 MIRc SINE SINE
7173 chr1.54352616.54353021 <NA> <NA> <NA>
7174 chr1.54353688.54354185 MIR3 SINE SINE
7175 chr1.54354881.54355205 L2a LINE LINE
7176 chr1.54355822.54356211 <NA> <NA> <NA>
7177 chr1.54366051.54366330 MIR SINE SINE
7178 chr1.54366051.54366330 MIRb SINE SINE
7179 chr1.54375357.54376041 (TGCA)n Other Simple_repeat
7180 chr1.54376831.54377724 MIRc SINE SINE
7181 chr1.54376831.54377724 Kanga2_a DNA DNA
7182 chr1.54378561.54378815 <NA> <NA> <NA>
7183 chr1.54384666.54385830 L2c LINE LINE
7184 chr1.54384666.54385830 MIRb SINE SINE
7185 chr1.54396972.54397684 <NA> <NA> <NA>
7186 chr1.54402957.54403209 <NA> <NA> <NA>
7187 chr1.54404914.54405549 <NA> <NA> <NA>
7188 chr1.54406078.54407072 (CCCT)n Other Simple_repeat
7189 chr1.54406078.54407072 (CCGC)n Other Simple_repeat
7190 chr1.54406078.54407072 (CCG)n Other Simple_repeat
7191 chr1.54406078.54407072 (CCGACC)n Other Simple_repeat
7192 chr1.54407298.54408096 (T)n Other Simple_repeat
7193 chr1.54408272.54408572 <NA> <NA> <NA>
7194 chr1.54429042.54429645 MLT1L LTR LTR
7195 chr1.54429042.54429645 L2b LINE LINE
7196 chr1.54429042.54429645 AluJb SINE SINE
7197 chr1.54459771.54460284 (GGGA)n Other Simple_repeat
7198 chr1.54463416.54463884 MIR3 SINE SINE
7199 chr1.54463416.54463884 G-rich Other Low_complexity
7200 chr1.54464620.54465047 (TCCTT)n Other Simple_repeat
7201 chr1.54465325.54465781 MIRb SINE SINE
7202 chr1.54471430.54472125 MIRb SINE SINE
7203 chr1.54474726.54475427 MIR3 SINE SINE
7204 chr1.54474726.54475427 MIR3 SINE SINE
7205 chr1.54475657.54476176 MIR SINE SINE
7206 chr1.54488032.54488600 <NA> <NA> <NA>
7207 chr1.54488889.54489785 (A)n Other Simple_repeat
7208 chr1.54488889.54489785 A-rich Other Low_complexity
7209 chr1.54490625.54491033 (GCT)n Other Simple_repeat
7210 chr1.54499467.54500259 MIRb SINE SINE
7211 chr1.54506502.54506881 L2c LINE LINE
7212 chr1.54516106.54516945 AluJb SINE SINE
7213 chr1.54541918.54543067 L2b LINE LINE
7214 chr1.54544180.54544431 L2b LINE LINE
7215 chr1.54547527.54548993 <NA> <NA> <NA>
7216 chr1.54549639.54549826 L2b LINE LINE
7217 chr1.54558029.54558917 L2a LINE LINE
7218 chr1.54558029.54558917 MIR SINE SINE
7219 chr1.54558029.54558917 L2a LINE LINE
7220 chr1.54559789.54560173 L2b LINE LINE
7221 chr1.54562933.54563814 SVA_F Retroposon Retroposon
7222 chr1.54562933.54563814 AluJr4 SINE SINE
7223 chr1.54562933.54563814 MIRb SINE SINE
7224 chr1.54562933.54563814 L2c LINE LINE
7225 chr1.54562933.54563814 AluJb SINE SINE
7226 chr1.54562933.54563814 AluSz SINE SINE
7227 chr1.54569432.54569622 <NA> <NA> <NA>
7228 chr1.54575178.54575809 L2b LINE LINE
7229 chr1.54577693.54578381 L1MB5 LINE LINE
7230 chr1.54581564.54582099 <NA> <NA> <NA>
7231 chr1.54585422.54586041 L2b LINE LINE
7232 chr1.54585422.54586041 L2a LINE LINE
7233 chr1.54610139.54610292 <NA> <NA> <NA>
7234 chr1.54621699.54622028 L2c LINE LINE
7235 chr1.54621699.54622028 AluSx SINE SINE
7236 chr1.54623441.54623832 MIR3 SINE SINE
7237 chr1.54636425.54637230 LTR5_Hs LTR LTR
7238 chr1.54636425.54637230 MER9a1 LTR LTR
7239 chr1.54652844.54653512 L2a LINE LINE
7240 chr1.54671897.54672449 <NA> <NA> <NA>
7241 chr1.54678749.54679560 <NA> <NA> <NA>
7242 chr1.54715274.54716543 L2b LINE LINE
7243 chr1.54715274.54716543 MIRb SINE SINE
7244 chr1.54715274.54716543 MIR3 SINE SINE
7245 chr1.54742359.54742623 MLT1I LTR LTR
7246 chr1.54755573.54755843 MER5B DNA DNA
7247 chr1.54755573.54755843 AluSp SINE SINE
7248 chr1.54763968.54765074 MIRc SINE SINE
7249 chr1.54763968.54765074 MIR3 SINE SINE
7250 chr1.54763968.54765074 MIRc SINE SINE
7251 chr1.54763968.54765074 L2a LINE LINE
7252 chr1.54772173.54772428 AluY SINE SINE
7253 chr1.54772173.54772428 MER58B DNA DNA
7254 chr1.54772173.54772428 AluJo SINE SINE
7255 chr1.54775216.54775422 MLT1K LTR LTR
7256 chr1.54781191.54781799 <NA> <NA> <NA>
7257 chr1.54794608.54795523 MIRb SINE SINE
7258 chr1.54794608.54795523 MIRc SINE SINE
7259 chr1.54799239.54799664 MIR3 SINE SINE
7260 chr1.54803859.54804090 MIRb SINE SINE
7261 chr1.54810355.54810914 MIRb SINE SINE
7262 chr1.54854446.54854749 MIRb SINE SINE
7263 chr1.54854446.54854749 MIRc SINE SINE
7264 chr1.54857871.54858201 LTR16A LTR LTR
7265 chr1.54859795.54860377 MIRb SINE SINE
7266 chr1.54859795.54860377 L2a LINE LINE
7267 chr1.54861047.54861181 L2a LINE LINE
7268 chr1.54861410.54861737 L2a LINE LINE
7269 chr1.54885932.54888024 MIRb SINE SINE
7270 chr1.54885932.54888024 L2a LINE LINE
7271 chr1.54904446.54905053 <NA> <NA> <NA>
7272 chr1.54906086.54906335 MER4A1 LTR LTR
7273 chr1.54922789.54923158 <NA> <NA> <NA>
7274 chr1.54927142.54928258 (AC)n Other Simple_repeat
7275 chr1.54927142.54928258 MIRb SINE SINE
7276 chr1.54927142.54928258 L2b LINE LINE
7277 chr1.54927142.54928258 L2c LINE LINE
7278 chr1.54927142.54928258 AluJb SINE SINE
7279 chr1.54934798.54935503 AluSz6 SINE SINE
7280 chr1.54934798.54935503 PRIMAX-int LTR LTR
7281 chr1.54934798.54935503 FLAM_C SINE SINE
7282 chr1.54934798.54935503 ERV24B_Prim-int LTR LTR
7283 chr1.54944890.54945812 L2b LINE LINE
7284 chr1.54944890.54945812 MIR1_Amn SINE SINE
7285 chr1.54944890.54945812 (ATTC)n Other Simple_repeat
7286 chr1.54950226.54951027 L2 LINE LINE
7287 chr1.54950226.54951027 L2b LINE LINE
7288 chr1.54950226.54951027 MamRep564 Other Unknown
7289 chr1.54955444.54955728 MER20 DNA DNA
7290 chr1.54955444.54955728 MER51B LTR LTR
7291 chr1.54971400.54971755 <NA> <NA> <NA>
7292 chr1.54973213.54973680 MIR3 SINE SINE
7293 chr1.54980387.54981082 MIR1_Amn SINE SINE
7294 chr1.54990231.54990720 <NA> <NA> <NA>
7295 chr1.54996360.54997424 (T)n Other Simple_repeat
7296 chr1.55007608.55008017 MIRb SINE SINE
7297 chr1.55007608.55008017 MIR1_Amn SINE SINE
7298 chr1.55007608.55008017 MIR SINE SINE
7299 chr1.55021860.55022524 G-rich Other Low_complexity
7300 chr1.55021860.55022524 L2a LINE LINE
7301 chr1.55026750.55027343 HERVH-int LTR LTR
7302 chr1.55026750.55027343 HERVH-int LTR LTR
7303 chr1.55039222.55040233 (GCT)n Other Simple_repeat
7304 chr1.55039222.55040233 MIR3 SINE SINE
7305 chr1.55049843.55050670 L2b LINE LINE
7306 chr1.55062032.55062434 L2a LINE LINE
7307 chr1.55064211.55064617 MIRb SINE SINE
7308 chr1.55064947.55065247 <NA> <NA> <NA>
7309 chr1.55070948.55071956 MIRb SINE SINE
7310 chr1.55070948.55071956 L2a LINE LINE
7311 chr1.55081047.55081825 MIRc SINE SINE
7312 chr1.55089731.55090014 <NA> <NA> <NA>
7313 chr1.55091126.55091668 MER1B DNA DNA
7314 chr1.55123313.55123571 <NA> <NA> <NA>
7315 chr1.55127839.55128321 <NA> <NA> <NA>
7316 chr1.55140621.55140817 <NA> <NA> <NA>
7317 chr1.55143802.55143969 <NA> <NA> <NA>
7318 chr1.55170187.55170755 L2a LINE LINE
7319 chr1.55170187.55170755 MIRb SINE SINE
7320 chr1.55170187.55170755 MIR SINE SINE
7321 chr1.55170187.55170755 L2c LINE LINE
7322 chr1.55179027.55179510 L2a LINE LINE
7323 chr1.55214269.55215998 (CGCGC)n Other Simple_repeat
7324 chr1.55214269.55215998 (GGCGC)n Other Simple_repeat
7325 chr1.55214269.55215998 (CCT)n Other Simple_repeat
7326 chr1.55230631.55231225 (AAT)n Other Simple_repeat
7327 chr1.55250533.55251010 MLT1N2 LTR LTR
7328 chr1.55275460.55276194 Charlie9 DNA DNA
7329 chr1.55275460.55276194 MER112 DNA DNA
7330 chr1.55275460.55276194 MER103C DNA DNA
7331 chr1.55277288.55277968 MER5B DNA DNA
7332 chr1.55277288.55277968 MIRc SINE SINE
7333 chr1.55277288.55277968 (GT)n Other Simple_repeat
7334 chr1.55303002.55303461 LTR33 LTR LTR
7335 chr1.55305852.55306052 MLT1L LTR LTR
7336 chr1.55310512.55311512 MIRb SINE SINE
7337 chr1.55310512.55311512 L2c LINE LINE
7338 chr1.55310512.55311512 MIRb SINE SINE
7339 chr1.55310512.55311512 L2c LINE LINE
7340 chr1.55317774.55318623 MIR SINE SINE
7341 chr1.55317774.55318623 L2c LINE LINE
7342 chr1.55317774.55318623 MIRc SINE SINE
7343 chr1.55328991.55329310 MIRb SINE SINE
7344 chr1.55337942.55338388 LTR41C LTR LTR
7345 chr1.55378495.55378852 <NA> <NA> <NA>
7346 chr1.55402039.55402377 L2c LINE LINE
7347 chr1.55420874.55421662 L2c LINE LINE
7348 chr1.55420874.55421662 MER39B LTR LTR
7349 chr1.55420874.55421662 MIRb SINE SINE
7350 chr1.55428695.55429710 L2b LINE LINE
7351 chr1.55428695.55429710 MIRc SINE SINE
7352 chr1.55428695.55429710 MIRc SINE SINE
7353 chr1.55443439.55443881 CR1-L3A_Croc LINE LINE
7354 chr1.55484236.55484713 MIRb SINE SINE
7355 chr1.55484236.55484713 L2c LINE LINE
7356 chr1.55518828.55519406 L2-3_Crp LINE LINE
7357 chr1.55518828.55519406 L2a LINE LINE
7358 chr1.55518828.55519406 MIRb SINE SINE
7359 chr1.55572900.55573606 L2c LINE LINE
7360 chr1.55572900.55573606 L2a LINE LINE
7361 chr1.55580849.55581386 L2b LINE LINE
7362 chr1.55580849.55581386 MIRc SINE SINE
7363 chr1.55591888.55592644 LTR16A LTR LTR
7364 chr1.55632144.55632575 Kanga11a DNA DNA
7365 chr1.55632144.55632575 L2c LINE LINE
7366 chr1.55636661.55637000 MIRc SINE SINE
7367 chr1.55636661.55637000 L2c LINE LINE
7368 chr1.55669316.55669969 MIRc SINE SINE
7369 chr1.55669316.55669969 MLT1J1 LTR LTR
7370 chr1.55673383.55673795 LTR33 LTR LTR
7371 chr1.55694110.55694958 LTR16A LTR LTR
7372 chr1.55694110.55694958 MIRb SINE SINE
7373 chr1.55695655.55695819 MIRb SINE SINE
7374 chr1.55696274.55696959 MIRb SINE SINE
7375 chr1.55702033.55702349 L2c LINE LINE
7376 chr1.55718564.55719500 L2c LINE LINE
7377 chr1.55718564.55719500 L2c LINE LINE
7378 chr1.55750120.55750789 <NA> <NA> <NA>
7379 chr1.55767190.55767577 MLT1I LTR LTR
7380 chr1.55781755.55782410 ERVL-int LTR LTR
7381 chr1.55818890.55819469 LTR16E2 LTR LTR
7382 chr1.55818890.55819469 MIR SINE SINE
7383 chr1.55818890.55819469 AluSq2 SINE SINE
7384 chr1.55827205.55827763 AluJb SINE SINE
7385 chr1.55860724.55861156 <NA> <NA> <NA>
7386 chr1.55868987.55869568 MER20B DNA DNA
7387 chr1.55868987.55869568 MER20B DNA DNA
7388 chr1.55868987.55869568 MIRb SINE SINE
7389 chr1.55893125.55893587 L1PA14 LINE LINE
7390 chr1.55893125.55893587 L1PREC2 LINE LINE
7391 chr1.55893125.55893587 AluJo SINE SINE
7392 chr1.55938529.55939099 <NA> <NA> <NA>
7393 chr1.55955250.55955533 L2a LINE LINE
7394 chr1.56064391.56065477 (AAC)n Other Simple_repeat
7395 chr1.56064391.56065477 LTR107_Mam LTR LTR
7396 chr1.56065523.56066244 LTR107_Mam LTR LTR
7397 chr1.56065523.56066244 L1MCa LINE LINE
7398 chr1.56065523.56066244 (GTTT)n Other Simple_repeat
7399 chr1.56132520.56132874 L2c LINE LINE
7400 chr1.56170937.56171418 LTR33A LTR LTR
7401 chr1.56170937.56171418 LTR33A LTR LTR
7402 chr1.56170937.56171418 ERVL-E-int LTR LTR
7403 chr1.56174285.56174721 L1MEc LINE LINE
7404 chr1.56199013.56199511 MIRc SINE SINE
7405 chr1.56199013.56199511 L2c LINE LINE
7406 chr1.56200398.56200806 <NA> <NA> <NA>
7407 chr1.56236198.56236445 <NA> <NA> <NA>
7408 chr1.56259074.56259699 MIRb SINE SINE
7409 chr1.56259074.56259699 MIRb SINE SINE
7410 chr1.56301887.56302321 L1ME4a LINE LINE
7411 chr1.56301887.56302321 Plat_L3 LINE LINE
7412 chr1.56304926.56305305 L1PB1 LINE LINE
7413 chr1.56304926.56305305 MIR1_Amn SINE SINE
7414 chr1.56328842.56329202 <NA> <NA> <NA>
7415 chr1.56331938.56332518 <NA> <NA> <NA>
7416 chr1.56355338.56356406 MIRb SINE SINE
7417 chr1.56355338.56356406 L2c LINE LINE
7418 chr1.56355338.56356406 L2b LINE LINE
7419 chr1.56374492.56375365 MIRb SINE SINE
7420 chr1.56374492.56375365 (A)n Other Simple_repeat
7421 chr1.56376343.56376898 MIRb SINE SINE
7422 chr1.56376343.56376898 MIRb SINE SINE
7423 chr1.56396600.56396826 MamRep605 Other LTR?
7424 chr1.56399312.56399770 <NA> <NA> <NA>
7425 chr1.56425025.56425718 MIR3 SINE SINE
7426 chr1.56430473.56430805 AluJr SINE SINE
7427 chr1.56434046.56434307 L2c LINE LINE
7428 chr1.56434046.56434307 MER5A DNA DNA
7429 chr1.56436908.56437581 L2c LINE LINE
7430 chr1.56439598.56440020 <NA> <NA> <NA>
7431 chr1.56446705.56447114 <NA> <NA> <NA>
7432 chr1.56453465.56454006 X7C_LINE LINE LINE
7433 chr1.56453465.56454006 MLT1K LTR LTR
7434 chr1.56453465.56454006 L1ME3E LINE LINE
7435 chr1.56456513.56457086 MIRb SINE SINE
7436 chr1.56456513.56457086 MIRb SINE SINE
7437 chr1.56477146.56478049 MIRb SINE SINE
7438 chr1.56494325.56494704 <NA> <NA> <NA>
7439 chr1.56502682.56502956 L2c LINE LINE
7440 chr1.56505915.56506448 MIR3 SINE SINE
7441 chr1.56508399.56509022 <NA> <NA> <NA>
7442 chr1.56516801.56517219 UCON35 Other Unknown
7443 chr1.56521199.56521723 AluSz6 SINE SINE
7444 chr1.56521199.56521723 (TG)n Other Simple_repeat
7445 chr1.56521199.56521723 FLAM_C SINE SINE
7446 chr1.56521199.56521723 (CTCC)n Other Simple_repeat
7447 chr1.56535675.56536204 MIRc SINE SINE
7448 chr1.56565749.56566406 MIRb SINE SINE
7449 chr1.56565749.56566406 MIR SINE SINE
7450 chr1.56578302.56579698 L2c LINE LINE
7451 chr1.56578302.56579698 (CGGCG)n Other Simple_repeat
7452 chr1.56578302.56579698 (CCTCCTGCT)n Other Simple_repeat
7453 chr1.56578302.56579698 (TGC)n Other Simple_repeat
7454 chr1.56637801.56638042 L2a LINE LINE
7455 chr1.56644675.56646378 (GGC)n Other Simple_repeat
7456 chr1.56644675.56646378 G-rich Other Low_complexity
7457 chr1.56644675.56646378 MIR3 SINE SINE
7458 chr1.56644675.56646378 MIRb SINE SINE
7459 chr1.56654496.56655045 <NA> <NA> <NA>
7460 chr1.56655356.56655789 FLAM_C SINE SINE
7461 chr1.56655356.56655789 (ATTT)n Other Simple_repeat
7462 chr1.56655356.56655789 MSTB1 LTR LTR
7463 chr1.56666112.56666533 L2c LINE LINE
7464 chr1.56676450.56677357 MLT1D LTR LTR
7465 chr1.56676450.56677357 Charlie29a DNA DNA
7466 chr1.56676450.56677357 Charlie29a DNA DNA
7467 chr1.56684800.56685344 L2a LINE LINE
7468 chr1.56684800.56685344 L2a LINE LINE
7469 chr1.56684800.56685344 L2 LINE LINE
7470 chr1.56684800.56685344 L2a LINE LINE
7471 chr1.56688435.56689198 L2c LINE LINE
7472 chr1.56688435.56689198 L2c LINE LINE
7473 chr1.56709270.56709890 <NA> <NA> <NA>
7474 chr1.56710697.56711161 (GACTCAT)n Other Simple_repeat
7475 chr1.56758208.56758528 MIR SINE SINE
7476 chr1.56788415.56788934 <NA> <NA> <NA>
7477 chr1.56797227.56797678 L2c LINE LINE
7478 chr1.56797227.56797678 LTR67B LTR LTR
7479 chr1.56797916.56798833 L2a LINE LINE
7480 chr1.56797916.56798833 L2c LINE LINE
7481 chr1.56797916.56798833 (AAT)n Other Simple_repeat
7482 chr1.56797916.56798833 MIR SINE SINE
7483 chr1.56799793.56800527 (AATAA)n Other Simple_repeat
7484 chr1.56803683.56803977 MER5B DNA DNA
7485 chr1.56810976.56811729 L2c LINE LINE
7486 chr1.56810976.56811729 MIR SINE SINE
7487 chr1.56810976.56811729 LTR38B LTR LTR
7488 chr1.56810976.56811729 MLT1B LTR LTR
7489 chr1.56818642.56819724 MIRb SINE SINE
7490 chr1.56820822.56821662 MER112 DNA DNA
7491 chr1.56820822.56821662 MIR3 SINE SINE
7492 chr1.56831947.56832820 (A)n Other Simple_repeat
7493 chr1.56831947.56832820 (AT)n Other Simple_repeat
7494 chr1.56831947.56832820 (CATA)n Other Simple_repeat
7495 chr1.56831947.56832820 (AG)n Other Simple_repeat
7496 chr1.56831947.56832820 (TG)n Other Simple_repeat
7497 chr1.56831947.56832820 AluJo SINE SINE
7498 chr1.56872566.56872941 GA-rich Other Low_complexity
7499 chr1.56901646.56902148 L2c LINE LINE
7500 chr1.56901646.56902148 L3 LINE LINE
7501 chr1.56904688.56905250 MIR3 SINE SINE
7502 chr1.56904688.56905250 MIR3 SINE SINE
7503 chr1.56911175.56911483 MIRb SINE SINE
7504 chr1.56911175.56911483 MIRc SINE SINE
7505 chr1.56958174.56958911 L2c LINE LINE
7506 chr1.56965793.56966233 MIR SINE SINE
7507 chr1.57007931.57008242 <NA> <NA> <NA>
7508 chr1.57013509.57013918 MIR3 SINE SINE
7509 chr1.57017147.57017516 <NA> <NA> <NA>
7510 chr1.57026409.57027264 MIRb SINE SINE
7511 chr1.57026409.57027264 MER83B LTR LTR
7512 chr1.57059010.57059472 L2c LINE LINE
7513 chr1.57059010.57059472 MIRb SINE SINE
7514 chr1.57061375.57061872 L3 LINE LINE
7515 chr1.57061375.57061872 MIRb SINE SINE
7516 chr1.57067030.57067487 MIRb SINE SINE
7517 chr1.57067971.57068226 MIRc SINE SINE
7518 chr1.57082254.57083299 L1PA10 LINE LINE
7519 chr1.57082254.57083299 MIRb SINE SINE
7520 chr1.57088697.57089033 MER67A LTR LTR
7521 chr1.57088697.57089033 MIR SINE SINE
7522 chr1.57089572.57090268 MSTA LTR LTR
7523 chr1.57102846.57103554 MIRb SINE SINE
7524 chr1.57111330.57111496 L2a LINE LINE
7525 chr1.57115037.57115539 MIRb SINE SINE
7526 chr1.57115037.57115539 MER3 DNA DNA
7527 chr1.57124321.57125397 MIRb SINE SINE
7528 chr1.57124321.57125397 L2c LINE LINE
7529 chr1.57128661.57128868 MIR1_Amn SINE SINE
7530 chr1.57131350.57131597 MIRb SINE SINE
7531 chr1.57131782.57132435 L2a LINE LINE
7532 chr1.57131782.57132435 L2a LINE LINE
7533 chr1.57131782.57132435 L2c LINE LINE
7534 chr1.57133336.57133602 MIRb SINE SINE
7535 chr1.57162949.57164041 L2a LINE LINE
7536 chr1.57162949.57164041 MIR3 SINE SINE
7537 chr1.57174016.57174492 L2c LINE LINE
7538 chr1.57206045.57206535 GA-rich Other Low_complexity
7539 chr1.57206045.57206535 MIR3 SINE SINE
7540 chr1.57217854.57218284 L2b LINE LINE
7541 chr1.57218669.57219177 AluJb SINE SINE
7542 chr1.57218669.57219177 Charlie18a DNA DNA
7543 chr1.57238005.57238816 MER5A DNA DNA
7544 chr1.57252993.57253326 <NA> <NA> <NA>
7545 chr1.57254078.57254325 <NA> <NA> <NA>
7546 chr1.57280151.57280671 MIRb SINE SINE
7547 chr1.57299953.57300615 L2b LINE LINE
7548 chr1.57299953.57300615 L2a LINE LINE
7549 chr1.57319138.57319518 UCON8 DNA DNA
7550 chr1.57340638.57341055 MIRb SINE SINE
7551 chr1.57340638.57341055 MIRc SINE SINE
7552 chr1.57362393.57362793 MLT1A0 LTR LTR
7553 chr1.57377700.57378038 LTR33 LTR LTR
7554 chr1.57411282.57411778 MIRc SINE SINE
7555 chr1.57422237.57424130 <NA> <NA> <NA>
7556 chr1.57424253.57425003 (CGAG)n Other Simple_repeat
7557 chr1.57431485.57431851 AluSg SINE SINE
7558 chr1.57485540.57486008 MIRb SINE SINE
7559 chr1.57485540.57486008 L2c LINE LINE
7560 chr1.57489365.57490064 MLT1A0 LTR LTR
7561 chr1.57494680.57495229 L3b LINE LINE
7562 chr1.57522392.57523518 HAL1 LINE LINE
7563 chr1.57522392.57523518 THE1B LTR LTR
7564 chr1.57522392.57523518 HERVL-int LTR LTR
7565 chr1.57522392.57523518 MLT2A2 LTR LTR
7566 chr1.57522392.57523518 HAL1 LINE LINE
7567 chr1.57550194.57550398 MIRb SINE SINE
7568 chr1.57550194.57550398 L3 LINE LINE
7569 chr1.57590795.57591310 L1M5 LINE LINE
7570 chr1.57590795.57591310 MIRb SINE SINE
7571 chr1.57598948.57600072 MIRb SINE SINE
7572 chr1.57598948.57600072 L2b LINE LINE
7573 chr1.57611849.57612274 L2a LINE LINE
7574 chr1.57611849.57612274 (TG)n Other Simple_repeat
7575 chr1.57611849.57612274 L2a LINE LINE
7576 chr1.57611849.57612274 MLT1D LTR LTR
7577 chr1.57616840.57617344 MIR3 SINE SINE
7578 chr1.57616840.57617344 LTR16A1 LTR LTR
7579 chr1.57622841.57624014 MIRb SINE SINE
7580 chr1.57632193.57633363 HAL1 LINE LINE
7581 chr1.57632193.57633363 MER5A DNA DNA
7582 chr1.57637216.57637604 L2c LINE LINE
7583 chr1.57638375.57638660 <NA> <NA> <NA>
7584 chr1.57711252.57711783 LTR8A LTR LTR
7585 chr1.57711252.57711783 HUERS-P1-int LTR LTR
7586 chr1.57711252.57711783 LTR49-int LTR LTR
7587 chr1.57722108.57722982 MER117 DNA DNA
7588 chr1.57722108.57722982 L2 LINE LINE
7589 chr1.57761617.57762180 <NA> <NA> <NA>
7590 chr1.57796594.57796956 <NA> <NA> <NA>
7591 chr1.57831585.57832130 AluJb SINE SINE
7592 chr1.57831585.57832130 L2b LINE LINE
7593 chr1.57844979.57845335 LTR33 LTR LTR
7594 chr1.57848486.57848688 L1M6 LINE LINE
7595 chr1.57966921.57967479 L1M3 LINE LINE
7596 chr1.57966921.57967479 L1MB1 LINE LINE
7597 chr1.58041465.58042167 MIR SINE SINE
7598 chr1.58041465.58042167 MER117 DNA DNA
7599 chr1.58047195.58047522 MER33 DNA DNA
7600 chr1.58047195.58047522 MER33 DNA DNA
7601 chr1.58059012.58059298 MIRb SINE SINE
7602 chr1.58065609.58066002 LTR16A LTR LTR
7603 chr1.58067020.58067432 L2c LINE LINE
7604 chr1.58067020.58067432 MIRb SINE SINE
7605 chr1.58075076.58075884 MLT1O LTR LTR
7606 chr1.58075076.58075884 MLT1I LTR LTR
7607 chr1.58075076.58075884 MLT1O LTR LTR
7608 chr1.58084375.58084620 MIRb SINE SINE
7609 chr1.58162732.58163743 MER20 DNA DNA
7610 chr1.58162732.58163743 LTR50 LTR LTR
7611 chr1.58162732.58163743 L1M4a2 LINE LINE
7612 chr1.58206730.58207074 MLT1H LTR LTR
7613 chr1.58244825.58245254 MIRb SINE SINE
7614 chr1.58249848.58250702 (GCAGCA)n Other Simple_repeat
7615 chr1.58282635.58283133 <NA> <NA> <NA>
7616 chr1.58290602.58291084 MIRb SINE SINE
7617 chr1.58356130.58356700 LTR78B LTR LTR
7618 chr1.58356130.58356700 (ACAT)n Other Simple_repeat
7619 chr1.58356130.58356700 L2c LINE LINE
7620 chr1.58395166.58395863 MIR3 SINE SINE
7621 chr1.58395166.58395863 L2b LINE LINE
7622 chr1.58397235.58397753 <NA> <NA> <NA>
7623 chr1.58411977.58412675 MLT1K LTR LTR
7624 chr1.58421634.58421914 L3 LINE LINE
7625 chr1.58421634.58421914 CR1-3_Croc LINE LINE
7626 chr1.58421634.58421914 MIRb SINE SINE
7627 chr1.58432688.58433206 <NA> <NA> <NA>
7628 chr1.58457120.58457493 MIR3 SINE SINE
7629 chr1.58460482.58460735 Charlie7 DNA DNA
7630 chr1.58466735.58467339 L2c LINE LINE
7631 chr1.58466735.58467339 MIRb SINE SINE
7632 chr1.58468837.58469336 LTR16B1 LTR LTR
7633 chr1.58468837.58469336 MIRb SINE SINE
7634 chr1.58470560.58470965 L3 LINE LINE
7635 chr1.58470560.58470965 L3 LINE LINE
7636 chr1.58470560.58470965 MIRc SINE SINE
7637 chr1.58477450.58477754 MLT1K LTR LTR
7638 chr1.58477450.58477754 MLT1K LTR LTR
7639 chr1.58482959.58483446 MER115 DNA DNA
7640 chr1.58482959.58483446 MER115 DNA DNA
7641 chr1.58508451.58509106 L1MB1 LINE LINE
7642 chr1.58545914.58547044 (TCCCC)n Other Simple_repeat
7643 chr1.58576479.58577701 (CAG)n Other Simple_repeat
7644 chr1.58584376.58585080 L3 LINE LINE
7645 chr1.58592214.58593021 MIRb SINE SINE
7646 chr1.58592214.58593021 MIR SINE SINE
7647 chr1.58592214.58593021 (TGCC)n Other Simple_repeat
7648 chr1.58618317.58618659 L2 LINE LINE
7649 chr1.58618317.58618659 MLT1J LTR LTR
7650 chr1.58628989.58629420 L2b LINE LINE
7651 chr1.58628989.58629420 L2c LINE LINE
7652 chr1.58652382.58652860 MIRb SINE SINE
7653 chr1.58683649.58684045 Charlie16a DNA DNA
7654 chr1.58683649.58684045 MamSINE1 SINE SINE
7655 chr1.58687545.58687886 LTR46 LTR LTR
7656 chr1.58698880.58700337 MIRc SINE SINE
7657 chr1.58698880.58700337 MADE2 DNA DNA
7658 chr1.58698880.58700337 MIRb SINE SINE
7659 chr1.58698880.58700337 MIRb SINE SINE
7660 chr1.58698880.58700337 AluSq2 SINE SINE
7661 chr1.58720779.58720997 L2a LINE LINE
7662 chr1.58722848.58723308 MLT1A LTR LTR
7663 chr1.58727380.58727800 MamRTE1 LINE LINE
7664 chr1.58741697.58742016 MER5B DNA DNA
7665 chr1.58745758.58746038 L2b LINE LINE
7666 chr1.58755271.58756018 <NA> <NA> <NA>
7667 chr1.58762801.58763587 L2c LINE LINE
7668 chr1.58762801.58763587 MER91A DNA DNA
7669 chr1.58762801.58763587 MIR3 SINE SINE
7670 chr1.58764117.58764778 <NA> <NA> <NA>
7671 chr1.58773243.58773789 (TG)n Other Simple_repeat
7672 chr1.58782274.58784820 (CTG)n Other Simple_repeat
7673 chr1.58782274.58784820 (GCTGCC)n Other Simple_repeat
7674 chr1.58782274.58784820 (CTGG)n Other Simple_repeat
7675 chr1.58785034.58785641 (ACACGC)n Other Simple_repeat
7676 chr1.58785034.58785641 MIRc SINE SINE
7677 chr1.58789412.58789657 L2c LINE LINE
7678 chr1.58804934.58805144 L2a LINE LINE
7679 chr1.58809276.58809592 MIRb SINE SINE
7680 chr1.58815148.58815932 MIRb SINE SINE
7681 chr1.58816118.58816913 (CAGTCCT)n Other Simple_repeat
7682 chr1.58816118.58816913 L1PA16 LINE LINE
7683 chr1.58823486.58823960 MIRb SINE SINE
7684 chr1.58832973.58833152 L2c LINE LINE
7685 chr1.58848759.58849541 <NA> <NA> <NA>
7686 chr1.58858181.58858856 L2c LINE LINE
7687 chr1.58858181.58858856 L2c LINE LINE
7688 chr1.58873574.58873936 L2a LINE LINE
7689 chr1.58881560.58881802 <NA> <NA> <NA>
7690 chr1.58883137.58883729 L3 LINE LINE
7691 chr1.58883827.58884164 L3 LINE LINE
7692 chr1.58883827.58884164 MIRc SINE SINE
7693 chr1.58883827.58884164 MIR SINE SINE
7694 chr1.58898891.58899583 MIRc SINE SINE
7695 chr1.58903506.58904249 MIRb SINE SINE
7696 chr1.58903506.58904249 (GGCCG)n Other Simple_repeat
7697 chr1.58922308.58922793 MIR1_Amn SINE SINE
7698 chr1.58932890.58933326 <NA> <NA> <NA>
7699 chr1.58971630.58972210 MIRb SINE SINE
7700 chr1.58971630.58972210 L2b LINE LINE
7701 chr1.58987087.58987485 MLT1B LTR LTR
7702 chr1.58987087.58987485 LTR33 LTR LTR
7703 chr1.58987087.58987485 L2c LINE LINE
7704 chr1.59006296.59006666 MIR SINE SINE
7705 chr1.59006296.59006666 L2b LINE LINE
7706 chr1.59008252.59008899 MIR SINE SINE
7707 chr1.59015818.59016207 <NA> <NA> <NA>
7708 chr1.59018716.59019183 L2b LINE LINE
7709 chr1.59020295.59020664 <NA> <NA> <NA>
7710 chr1.59025222.59025631 AluJo SINE SINE
7711 chr1.59029809.59030194 MIRc SINE SINE
7712 chr1.59029809.59030194 L2c LINE LINE
7713 chr1.59046233.59046594 L2c LINE LINE
7714 chr1.59052210.59052578 (TCAAGA)n Other Simple_repeat
7715 chr1.59062738.59063025 MLT1F2 LTR LTR
7716 chr1.59072391.59072827 <NA> <NA> <NA>
7717 chr1.59077942.59078496 MIRb SINE SINE
7718 chr1.59077942.59078496 MIR SINE SINE
7719 chr1.59077942.59078496 MIRb SINE SINE
7720 chr1.59084012.59084480 (CCTT)n Other Simple_repeat
7721 chr1.59096314.59096957 L2a LINE LINE
7722 chr1.59096314.59096957 L1MC4 LINE LINE
7723 chr1.59107500.59107939 MIR3 SINE SINE
7724 chr1.59117011.59117380 LTR85c LTR LTR
7725 chr1.59128284.59129251 MLT1J LTR LTR
7726 chr1.59128284.59129251 MIRb SINE SINE
7727 chr1.59128284.59129251 MIRb SINE SINE
7728 chr1.59139293.59139852 AluSz SINE SINE
7729 chr1.59143011.59143445 L2c LINE LINE
7730 chr1.59146844.59147302 MER5A DNA DNA
7731 chr1.59150668.59151617 <NA> <NA> <NA>
7732 chr1.59186454.59187040 MIRc SINE SINE
7733 chr1.59276411.59276859 MIRb SINE SINE
7734 chr1.59290093.59290886 MIRc SINE SINE
7735 chr1.59296371.59297308 (CCT)n Other Simple_repeat
7736 chr1.59329462.59329762 Tigger1a_Art DNA DNA
7737 chr1.59329462.59329762 L2b LINE LINE
7738 chr1.59329462.59329762 MER3 DNA DNA
7739 chr1.59360239.59360475 MIR3 SINE SINE
7740 chr1.59375203.59375831 AluSx SINE SINE
7741 chr1.59379288.59379585 Tigger3b DNA DNA
7742 chr1.59393130.59394036 <NA> <NA> <NA>
7743 chr1.59427160.59428032 MIRc SINE SINE
7744 chr1.59434167.59434776 L2a LINE LINE
7745 chr1.59434167.59434776 MLT1A0 LTR LTR
7746 chr1.59443127.59443946 <NA> <NA> <NA>
7747 chr1.59445185.59445412 MamRep605 Other LTR?
7748 chr1.59446340.59446919 <NA> <NA> <NA>
7749 chr1.59455042.59455512 L2c LINE LINE
7750 chr1.59483983.59484448 MIR SINE SINE
7751 chr1.59486603.59487115 L2b LINE LINE
7752 chr1.59486603.59487115 MamRep137 DNA DNA
7753 chr1.59486603.59487115 MER91C DNA DNA
7754 chr1.59498610.59499187 MER5A DNA DNA
7755 chr1.59499261.59499925 MER44B DNA DNA
7756 chr1.59499261.59499925 MER44B DNA DNA
7757 chr1.59499261.59499925 (AT)n Other Simple_repeat
7758 chr1.59553034.59553907 L2b LINE LINE
7759 chr1.59553034.59553907 MIRb SINE SINE
7760 chr1.59571343.59571570 L2c LINE LINE
7761 chr1.59571343.59571570 L1ME3B LINE LINE
7762 chr1.59595753.59596129 <NA> <NA> <NA>
7763 chr1.59596381.59596933 MIRc SINE SINE
7764 chr1.59601229.59601547 MIR SINE SINE
7765 chr1.59669807.59670375 <NA> <NA> <NA>
7766 chr1.59672025.59672210 <NA> <NA> <NA>
7767 chr1.59672928.59673575 L2a LINE LINE
7768 chr1.59678649.59679178 <NA> <NA> <NA>
7769 chr1.59701230.59701836 L2c LINE LINE
7770 chr1.59701230.59701836 L2a LINE LINE
7771 chr1.59701230.59701836 (TGTG)n Other Simple_repeat
7772 chr1.59704051.59704277 <NA> <NA> <NA>
7773 chr1.59707136.59707666 MIRb SINE SINE
7774 chr1.59730103.59731474 L1MC3 LINE LINE
7775 chr1.59730103.59731474 L2a LINE LINE
7776 chr1.59730103.59731474 L2b LINE LINE
7777 chr1.59730103.59731474 MIRb SINE SINE
7778 chr1.59730103.59731474 L2c LINE LINE
7779 chr1.59738825.59739264 MIRb SINE SINE
7780 chr1.59743565.59744292 MIR3 SINE SINE
7781 chr1.59743565.59744292 MIR SINE SINE
7782 chr1.59743565.59744292 AluSx1 SINE SINE
7783 chr1.59750592.59751073 MIRb SINE SINE
7784 chr1.59757203.59757628 <NA> <NA> <NA>
7785 chr1.59759164.59759776 <NA> <NA> <NA>
7786 chr1.59814353.59815471 AluSx SINE SINE
7787 chr1.59814353.59815471 (C)n Other Simple_repeat
7788 chr1.59819977.59820258 MIR SINE SINE
7789 chr1.59856679.59857197 L1MB7 LINE LINE
7790 chr1.59879452.59880426 MER30 DNA DNA
7791 chr1.59879452.59880426 MLT1I LTR LTR
7792 chr1.59885181.59886526 Tigger14a DNA DNA
7793 chr1.59885181.59886526 MER31B LTR LTR
7794 chr1.59893068.59893299 MIRc SINE SINE
7795 chr1.59897257.59897571 MIRc SINE SINE
7796 chr1.59897257.59897571 MIR3 SINE SINE
7797 chr1.59898201.59898452 MLT1H LTR LTR
7798 chr1.59898859.59899170 <NA> <NA> <NA>
7799 chr1.59906639.59907700 L1MB2 LINE LINE
7800 chr1.59906639.59907700 MER112 DNA DNA
7801 chr1.59906639.59907700 L2c LINE LINE
7802 chr1.59906639.59907700 L2c LINE LINE
7803 chr1.59914703.59915495 LTR5B LTR LTR
7804 chr1.59915496.59915872 <NA> <NA> <NA>
7805 chr1.59921111.59921787 L2c LINE LINE
7806 chr1.59921111.59921787 MER11D LTR LTR
7807 chr1.59926413.59927310 (CCCCG)n Other Simple_repeat
7808 chr1.59926413.59927310 L2a LINE LINE
7809 chr1.59926413.59927310 MIR SINE SINE
7810 chr1.59941047.59941608 L1MA4A LINE LINE
7811 chr1.59941047.59941608 Tigger3b DNA DNA
7812 chr1.59947045.59947815 MIR3 SINE SINE
7813 chr1.59967086.59967755 <NA> <NA> <NA>
7814 chr1.59971320.59971839 L3 LINE LINE
7815 chr1.59976695.59977048 <NA> <NA> <NA>
7816 chr1.59980702.59981076 L2c LINE LINE
7817 chr1.59986455.59987182 <NA> <NA> <NA>
7818 chr1.59990282.59990850 <NA> <NA> <NA>
7819 chr1.59994368.59994940 MIRb SINE SINE
7820 chr1.60068436.60068894 L3 LINE LINE
7821 chr1.60071441.60071644 MIRb SINE SINE
7822 chr1.60071441.60071644 MER117 DNA DNA
7823 chr1.60071441.60071644 MER5B DNA DNA
7824 chr1.60073563.60074112 <NA> <NA> <NA>
7825 chr1.60108034.60108500 L2c LINE LINE
7826 chr1.60108034.60108500 LTR81B LTR LTR
7827 chr1.60149271.60149630 MIRb SINE SINE
7828 chr1.60156882.60157204 <NA> <NA> <NA>
7829 chr1.60281125.60282009 MIRb SINE SINE
7830 chr1.60281125.60282009 MIR SINE SINE
7831 chr1.60281125.60282009 MER63D DNA DNA
7832 chr1.60283779.60284263 <NA> <NA> <NA>
7833 chr1.60341243.60341549 MIR SINE SINE
7834 chr1.60425648.60425768 L1MA9 LINE LINE
7835 chr1.60427097.60427552 AluSq2 SINE SINE
7836 chr1.60573151.60574294 L3 LINE LINE
7837 chr1.60573151.60574294 MIRb SINE SINE
7838 chr1.60597169.60597618 MIRb SINE SINE
7839 chr1.60762143.60762521 MIRc SINE SINE
7840 chr1.60765203.60765498 MER58A DNA DNA
7841 chr1.60765203.60765498 MIR SINE SINE
7842 chr1.60809040.60809883 MER81 DNA DNA
7843 chr1.60809040.60809883 MIRc SINE SINE
7844 chr1.60809040.60809883 MIRb SINE SINE
7845 chr1.60833257.60833502 <NA> <NA> <NA>
7846 chr1.60858267.60858629 (GT)n Other Simple_repeat
7847 chr1.60874735.60875043 L2c LINE LINE
7848 chr1.60886915.60887340 UCON97 DNA DNA
7849 chr1.60923532.60924392 MIRb SINE SINE
7850 chr1.60923532.60924392 (TTTTCC)n Other Simple_repeat
7851 chr1.60924622.60925645 <NA> <NA> <NA>
7852 chr1.60942345.60942838 MER5A DNA DNA
7853 chr1.60942345.60942838 L2a LINE LINE
7854 chr1.60942345.60942838 L2c LINE LINE
7855 chr1.60943093.60943550 L2c LINE LINE
7856 chr1.60960893.60961532 <NA> <NA> <NA>
7857 chr1.60963421.60963895 <NA> <NA> <NA>
7858 chr1.60972644.60973036 MIR SINE SINE
7859 chr1.60972644.60973036 MIRc SINE SINE
7860 chr1.60978999.60979264 L2c LINE LINE
7861 chr1.60989002.60989661 MIR SINE SINE
7862 chr1.60989729.60990388 <NA> <NA> <NA>
7863 chr1.60998840.60999369 MIRb SINE SINE
7864 chr1.61005956.61006352 <NA> <NA> <NA>
7865 chr1.61011655.61012810 L2c LINE LINE
7866 chr1.61013290.61013762 <NA> <NA> <NA>
7867 chr1.61032798.61032997 AluJr SINE SINE
7868 chr1.61042733.61043695 <NA> <NA> <NA>
7869 chr1.61049791.61051209 (CCCTCT)n Other Simple_repeat
7870 chr1.61049791.61051209 GA-rich Other Low_complexity
7871 chr1.61053791.61054237 <NA> <NA> <NA>
7872 chr1.61056819.61057373 (CA)n Other Simple_repeat
7873 chr1.61056819.61057373 (GCG)n Other Simple_repeat
7874 chr1.61057672.61057966 AluSq2 SINE SINE
7875 chr1.61057672.61057966 (CCTC)n Other Simple_repeat
7876 chr1.61076735.61077419 (AGCG)n Other Simple_repeat
7877 chr1.61077915.61078226 <NA> <NA> <NA>
7878 chr1.61079976.61080121 <NA> <NA> <NA>
7879 chr1.61082413.61082942 (CGCGG)n Other Simple_repeat
7880 chr1.61082413.61082942 (TC)n Other Simple_repeat
7881 chr1.61082413.61082942 (CACGCA)n Other Simple_repeat
7882 chr1.61082413.61082942 G-rich Other Low_complexity
7883 chr1.61082413.61082942 (GT)n Other Simple_repeat
7884 chr1.61083201.61083857 (GGCCCC)n Other Simple_repeat
7885 chr1.61083201.61083857 (CCG)n Other Simple_repeat
7886 chr1.61116289.61116802 <NA> <NA> <NA>
7887 chr1.61124142.61125598 L2b LINE LINE
7888 chr1.61141361.61141883 <NA> <NA> <NA>
7889 chr1.61157266.61157921 <NA> <NA> <NA>
7890 chr1.61159944.61160324 AluSx1 SINE SINE
7891 chr1.61159944.61160324 MIRc SINE SINE
7892 chr1.61159944.61160324 MER5A DNA DNA
7893 chr1.61162552.61162795 <NA> <NA> <NA>
7894 chr1.61170265.61170620 <NA> <NA> <NA>
7895 chr1.61182154.61182334 <NA> <NA> <NA>
7896 chr1.61183652.61184915 A-rich Other Low_complexity
7897 chr1.61224648.61224912 <NA> <NA> <NA>
7898 chr1.61253311.61253654 <NA> <NA> <NA>
7899 chr1.61271115.61271739 <NA> <NA> <NA>
7900 chr1.61286227.61286619 AluY SINE SINE
7901 chr1.61286227.61286619 L2c LINE LINE
7902 chr1.61286227.61286619 L2a LINE LINE
7903 chr1.61286947.61287470 L2a LINE LINE
7904 chr1.61286947.61287470 L2a LINE LINE
7905 chr1.61293348.61293961 L2c LINE LINE
7906 chr1.61318300.61319062 <NA> <NA> <NA>
7907 chr1.61334834.61335435 <NA> <NA> <NA>
7908 chr1.61337848.61338505 <NA> <NA> <NA>
7909 chr1.61357085.61357509 L2c LINE LINE
7910 chr1.61357085.61357509 MamRep38 DNA DNA
7911 chr1.61357085.61357509 L2c LINE LINE
7912 chr1.61368914.61369145 L2a LINE LINE
7913 chr1.61377362.61377800 <NA> <NA> <NA>
7914 chr1.61415921.61416163 L1MC4a LINE LINE
7915 chr1.61420995.61421628 L2a LINE LINE
7916 chr1.61426912.61427224 <NA> <NA> <NA>
7917 chr1.61434090.61434542 <NA> <NA> <NA>
7918 chr1.61436530.61437324 <NA> <NA> <NA>
7919 chr1.61444309.61444496 <NA> <NA> <NA>
7920 chr1.61452999.61453843 (T)n Other Simple_repeat
7921 chr1.61452999.61453843 (CT)n Other Simple_repeat
7922 chr1.61491384.61492067 ERVL-E-int LTR LTR
7923 chr1.61496635.61497085 MIR SINE SINE
7924 chr1.61498451.61498724 MamRep137 DNA DNA
7925 chr1.61504570.61505375 MER5A DNA DNA
7926 chr1.61504570.61505375 MIR3 SINE SINE
7927 chr1.61506182.61506593 MLT1A1 LTR LTR
7928 chr1.61506182.61506593 MamRep38 DNA DNA
7929 chr1.61538315.61538828 L1M4b LINE LINE
7930 chr1.61556417.61556864 L2b LINE LINE
7931 chr1.61588575.61589170 (TC)n Other Simple_repeat
7932 chr1.61605721.61606191 L2a LINE LINE
7933 chr1.61616126.61617069 AluSx1 SINE SINE
7934 chr1.61616126.61617069 (AC)n Other Simple_repeat
7935 chr1.61616126.61617069 L2c LINE LINE
7936 chr1.61616126.61617069 MLT1K LTR LTR
7937 chr1.61620589.61620859 L2c LINE LINE
7938 chr1.61641686.61642142 <NA> <NA> <NA>
7939 chr1.61660167.61660729 MIR3 SINE SINE
7940 chr1.61660167.61660729 THE1B LTR LTR
7941 chr1.61660167.61660729 AluY SINE SINE
7942 chr1.61708885.61709348 AluJb SINE SINE
7943 chr1.61711292.61711591 AluSq2 SINE SINE
7944 chr1.61711292.61711591 AluJb SINE SINE
7945 chr1.61724481.61725640 L2b LINE LINE
7946 chr1.61724481.61725640 MIRb SINE SINE
7947 chr1.61741895.61743498 (CCCGCCC)n Other Simple_repeat
7948 chr1.61741895.61743498 (GCCC)n Other Simple_repeat
7949 chr1.61741895.61743498 L2c LINE LINE
7950 chr1.61772743.61772929 MIRb SINE SINE
7951 chr1.61839715.61839990 (CTCCTCA)n Other Simple_repeat
7952 chr1.61842079.61842448 <NA> <NA> <NA>
7953 chr1.61851400.61852499 L2a LINE LINE
7954 chr1.61851400.61852499 L2a LINE LINE
7955 chr1.61851400.61852499 AluSz6 SINE SINE
7956 chr1.61851400.61852499 AluSz6 SINE SINE
7957 chr1.61851400.61852499 U6 Other snRNA
7958 chr1.61873522.61873997 MLT1A0 LTR LTR
7959 chr1.61873522.61873997 MER61C LTR LTR
7960 chr1.61879903.61880366 AluSz SINE SINE
7961 chr1.61879903.61880366 L2a LINE LINE
7962 chr1.61887252.61888304 AluSz6 SINE SINE
7963 chr1.61898743.61898993 AluJb SINE SINE
7964 chr1.61914851.61915331 L2b LINE LINE
7965 chr1.61914851.61915331 L1M5 LINE LINE
7966 chr1.61925940.61926305 LTR37B LTR LTR
7967 chr1.61925940.61926305 L2a LINE LINE
7968 chr1.61934920.61935305 <NA> <NA> <NA>
7969 chr1.61951711.61952560 (GA)n Other Simple_repeat
7970 chr1.61967789.61968262 (TGCTTT)n Other Simple_repeat
7971 chr1.61995825.61996173 <NA> <NA> <NA>
7972 chr1.62045570.62046039 AluJb SINE SINE
7973 chr1.62068437.62069423 MLT1K LTR LTR
7974 chr1.62068437.62069423 MIR SINE SINE
7975 chr1.62076376.62076752 <NA> <NA> <NA>
7976 chr1.62082523.62083179 MER58B DNA DNA
7977 chr1.62082523.62083179 AluSq2 SINE SINE
7978 chr1.62121988.62122778 AluSx SINE SINE
7979 chr1.62121988.62122778 AluSx1 SINE SINE
7980 chr1.62130909.62131763 AluSp SINE SINE
7981 chr1.62130909.62131763 AluJb SINE SINE
7982 chr1.62142327.62143062 L3 LINE LINE
7983 chr1.62142327.62143062 L2c LINE LINE
7984 chr1.62142327.62143062 L2c LINE LINE
7985 chr1.62175587.62176182 AluSg SINE SINE
7986 chr1.62194745.62194991 <NA> <NA> <NA>
7987 chr1.62198743.62199011 AluJr SINE SINE
7988 chr1.62218638.62218878 AluSq2 SINE SINE
7989 chr1.62218638.62218878 AluJr SINE SINE
7990 chr1.62218638.62218878 L1MB2 LINE LINE
7991 chr1.62228750.62229255 MIR SINE SINE
7992 chr1.62230671.62231160 AluSz SINE SINE
7993 chr1.62237776.62238318 <NA> <NA> <NA>
7994 chr1.62241322.62241876 L2a LINE LINE
7995 chr1.62247458.62248134 L2c LINE LINE
7996 chr1.62263354.62264000 <NA> <NA> <NA>
7997 chr1.62266209.62266675 <NA> <NA> <NA>
7998 chr1.62269957.62270204 MER5B DNA DNA
7999 chr1.62269957.62270204 L2a LINE LINE
8000 chr1.62278925.62279785 (CA)n Other Simple_repeat
8001 chr1.62278925.62279785 MIR SINE SINE
8002 chr1.62286183.62287380 G-rich Other Low_complexity
8003 chr1.62288132.62288619 <NA> <NA> <NA>
8004 chr1.62294317.62294752 <NA> <NA> <NA>
8005 chr1.62299690.62300157 L2a LINE LINE
8006 chr1.62308063.62308527 <NA> <NA> <NA>
8007 chr1.62318569.62319422 <NA> <NA> <NA>
8008 chr1.62321375.62321763 MIRc SINE SINE
8009 chr1.62325228.62325489 MER63C DNA DNA
8010 chr1.62325228.62325489 ERV3-16A3_LTR LTR LTR
8011 chr1.62327396.62327904 MER52C LTR LTR
8012 chr1.62333607.62333846 MLT1G LTR LTR
8013 chr1.62333607.62333846 AluSq2 SINE SINE
8014 chr1.62356373.62356965 MIR SINE SINE
8015 chr1.62356373.62356965 MLT1I LTR LTR
8016 chr1.62371130.62371729 Charlie1 DNA DNA
8017 chr1.62371130.62371729 AluJo SINE SINE
8018 chr1.62377125.62377503 <NA> <NA> <NA>
8019 chr1.62384445.62385010 MSTA LTR LTR
8020 chr1.62384445.62385010 MIRb SINE SINE
8021 chr1.62384445.62385010 L4_C_Mam LINE LINE
8022 chr1.62391522.62391805 MER91C DNA DNA
8023 chr1.62407338.62407809 AluSx1 SINE SINE
8024 chr1.62435855.62437649 <NA> <NA> <NA>
8025 chr1.62494300.62494567 <NA> <NA> <NA>
8026 chr1.62530615.62530992 <NA> <NA> <NA>
8027 chr1.62532732.62532974 L2a LINE LINE
8028 chr1.62532732.62532974 MLT1L LTR LTR
8029 chr1.62539147.62539633 <NA> <NA> <NA>
8030 chr1.62621954.62622508 MLT1H LTR LTR
8031 chr1.62621954.62622508 AluJo SINE SINE
8032 chr1.62668860.62669355 AluJb SINE SINE
8033 chr1.62668860.62669355 LTR86A1 LTR LTR
8034 chr1.62687414.62688822 (GGC)n Other Simple_repeat
8035 chr1.62690296.62690905 MIR SINE SINE
8036 chr1.62690296.62690905 (AC)n Other Simple_repeat
8037 chr1.62690296.62690905 MLT1K LTR LTR
8038 chr1.62720658.62721493 L2c LINE LINE
8039 chr1.62735419.62736230 L1MEc LINE LINE
8040 chr1.62735419.62736230 (TC)n Other Simple_repeat
8041 chr1.62751197.62751642 (TC)n Other Simple_repeat
8042 chr1.62751197.62751642 (TA)n Other Simple_repeat
8043 chr1.62778321.62778560 MER39 LTR LTR
8044 chr1.62783593.62784740 (T)n Other Simple_repeat
8045 chr1.62800919.62801314 L2c LINE LINE
8046 chr1.62800919.62801314 L2a LINE LINE
8047 chr1.62800919.62801314 L2c LINE LINE
8048 chr1.62823338.62824128 L2c LINE LINE
8049 chr1.62882263.62882693 <NA> <NA> <NA>
8050 chr1.62920147.62920625 AluJr SINE SINE
8051 chr1.62962711.62963608 (TG)n Other Simple_repeat
8052 chr1.62962711.62963608 MIRb SINE SINE
8053 chr1.63033156.63033498 MER61E LTR LTR
8054 chr1.63042215.63042815 <NA> <NA> <NA>
8055 chr1.63073952.63074345 <NA> <NA> <NA>
8056 chr1.63088090.63088253 <NA> <NA> <NA>
8057 chr1.63148878.63149483 MER117 DNA DNA
8058 chr1.63155389.63156090 L2b LINE LINE
8059 chr1.63155389.63156090 L2c LINE LINE
8060 chr1.63199745.63200001 <NA> <NA> <NA>
8061 chr1.63316867.63317850 <NA> <NA> <NA>
8062 chr1.63322277.63322903 (CCCACG)n Other Simple_repeat
8063 chr1.63322277.63322903 (CACC)n Other Simple_repeat
8064 chr1.63323046.63324079 <NA> <NA> <NA>
8065 chr1.63327648.63327898 <NA> <NA> <NA>
8066 chr1.63367136.63368161 <NA> <NA> <NA>
8067 chr1.63441478.63442246 AluSg SINE SINE
8068 chr1.63441478.63442246 AluJo SINE SINE
8069 chr1.63452468.63452854 (T)n Other Simple_repeat
8070 chr1.63522767.63523990 (TCTCTG)n Other Simple_repeat
8071 chr1.63557353.63557873 <NA> <NA> <NA>
8072 chr1.63575486.63575721 AluJr SINE SINE
8073 chr1.63593034.63594587 (CTCTCC)n Other Simple_repeat
8074 chr1.63612935.63613569 L2c LINE LINE
8075 chr1.63612935.63613569 (T)n Other Simple_repeat
8076 chr1.63612935.63613569 MLT1C LTR LTR
8077 chr1.63615713.63616285 AluSx1 SINE SINE
8078 chr1.63615713.63616285 MADE2 DNA DNA
8079 chr1.63618010.63618313 MIR SINE SINE
8080 chr1.63618010.63618313 MamRep1151 Other LTR?
8081 chr1.63624892.63625478 <NA> <NA> <NA>
8082 chr1.63631932.63632376 <NA> <NA> <NA>
8083 chr1.63634476.63635397 MIR SINE SINE
8084 chr1.63634476.63635397 MIR SINE SINE
8085 chr1.63643478.63644341 L2b LINE LINE
8086 chr1.63651119.63651638 <NA> <NA> <NA>
8087 chr1.63662168.63662738 <NA> <NA> <NA>
8088 chr1.63662860.63663173 <NA> <NA> <NA>
8089 chr1.63663288.63663684 L2b LINE LINE
8090 chr1.63663916.63664198 <NA> <NA> <NA>
8091 chr1.63674083.63675056 AluJb SINE SINE
8092 chr1.63674083.63675056 L2a LINE LINE
8093 chr1.63674083.63675056 MIRb SINE SINE
8094 chr1.63691660.63692369 FLAM_C SINE SINE
8095 chr1.63691660.63692369 L2b LINE LINE
8096 chr1.63691660.63692369 (TTTC)n Other Simple_repeat
8097 chr1.63697834.63698962 MamSINE1 SINE SINE
8098 chr1.63704543.63704750 MIRc SINE SINE
8099 chr1.63704543.63704750 L2b LINE LINE
8100 chr1.63714064.63714630 L2b LINE LINE
8101 chr1.63714064.63714630 MLT1I LTR LTR
8102 chr1.63721446.63722166 L1MA5A LINE LINE
8103 chr1.63721446.63722166 MIRb SINE SINE
8104 chr1.63730282.63730790 AluJr SINE SINE
8105 chr1.63731375.63731988 MIRb SINE SINE
8106 chr1.63746112.63746855 MIRc SINE SINE
8107 chr1.63771756.63772075 MIR3 SINE SINE
8108 chr1.63773666.63775384 MIR3 SINE SINE
8109 chr1.63773666.63775384 MIR3 SINE SINE
8110 chr1.63773666.63775384 (GGAGG)n Other Simple_repeat
8111 chr1.63773666.63775384 (GCC)n Other Simple_repeat
8112 chr1.63773666.63775384 (GC)n Other Simple_repeat
8113 chr1.63784642.63785664 MIRb SINE SINE
8114 chr1.63784642.63785664 AluSx1 SINE SINE
8115 chr1.63787936.63788165 <NA> <NA> <NA>
8116 chr1.63792098.63792556 L2a LINE LINE
8117 chr1.63792098.63792556 MIR SINE SINE
8118 chr1.63792098.63792556 MIRc SINE SINE
8119 chr1.63795158.63796102 <NA> <NA> <NA>
8120 chr1.63813810.63814044 <NA> <NA> <NA>
8121 chr1.63816959.63817593 L2b LINE LINE
8122 chr1.63821438.63822151 <NA> <NA> <NA>
8123 chr1.63835033.63835457 MIRb SINE SINE
8124 chr1.63835033.63835457 L2c LINE LINE
8125 chr1.63838430.63839051 Tigger3b DNA DNA
8126 chr1.63854083.63854630 MIR3 SINE SINE
8127 chr1.63854083.63854630 L2a LINE LINE
8128 chr1.63857373.63858030 L1MEc LINE LINE
8129 chr1.63857373.63858030 MIR SINE SINE
8130 chr1.63859632.63860135 MIRb SINE SINE
8131 chr1.63859632.63860135 MIR SINE SINE
8132 chr1.63863177.63863541 L2c LINE LINE
8133 chr1.63863177.63863541 MIR3 SINE SINE
8134 chr1.63867994.63868780 (GTT)n Other Simple_repeat
8135 chr1.63867994.63868780 MIRb SINE SINE
8136 chr1.63867994.63868780 L2c LINE LINE
8137 chr1.63874349.63874845 L3 LINE LINE
8138 chr1.63877877.63878225 <NA> <NA> <NA>
8139 chr1.63880997.63881430 L4_C_Mam LINE LINE
8140 chr1.63889036.63889411 MLT1F LTR LTR
8141 chr1.63889036.63889411 MIRb SINE SINE
8142 chr1.63892678.63893354 MIR3 SINE SINE
8143 chr1.63904926.63905162 <NA> <NA> <NA>
8144 chr1.63912579.63913071 L2c LINE LINE
8145 chr1.63913579.63914156 <NA> <NA> <NA>
8146 chr1.63920300.63921816 MIR SINE SINE
8147 chr1.63920300.63921816 L2a LINE LINE
8148 chr1.63920300.63921816 MIRb SINE SINE
8149 chr1.63920300.63921816 MER5A1 DNA DNA
8150 chr1.63920300.63921816 MIRc SINE SINE
8151 chr1.63922985.63923171 <NA> <NA> <NA>
8152 chr1.63933768.63934079 MIRb SINE SINE
8153 chr1.63935303.63935763 <NA> <NA> <NA>
8154 chr1.63946776.63947367 <NA> <NA> <NA>
8155 chr1.63951439.63951666 L2a LINE LINE
8156 chr1.63955769.63956416 <NA> <NA> <NA>
8157 chr1.63957027.63957241 <NA> <NA> <NA>
8158 chr1.63969397.63970271 L2c LINE LINE
8159 chr1.63969397.63970271 (CCACTGC)n Other Simple_repeat
8160 chr1.63969397.63970271 L2c LINE LINE
8161 chr1.63971700.63972132 <NA> <NA> <NA>
8162 chr1.63972995.63973579 <NA> <NA> <NA>
8163 chr1.63984125.63984497 MIRb SINE SINE
8164 chr1.63987117.63987466 MIRb SINE SINE
8165 chr1.64006442.64007361 MIRc SINE SINE
8166 chr1.64006442.64007361 MER117 DNA DNA
8167 chr1.64006442.64007361 MIR3 SINE SINE
8168 chr1.64019785.64020182 MLT1C LTR LTR
8169 chr1.64025186.64025565 L3 LINE LINE
8170 chr1.64025186.64025565 L1PB1 LINE LINE
8171 chr1.64033901.64034078 MIRb SINE SINE
8172 chr1.64033901.64034078 MamRTE1 LINE LINE
8173 chr1.64037950.64038478 <NA> <NA> <NA>
8174 chr1.64039430.64039939 MER131 Other DNA?
8175 chr1.64042455.64043080 MIR SINE SINE
8176 chr1.64042455.64043080 MIRc SINE SINE
8177 chr1.64050111.64050880 MIRb SINE SINE
8178 chr1.64052755.64053371 <NA> <NA> <NA>
8179 chr1.64060522.64061127 L2b LINE LINE
8180 chr1.64063245.64063489 MER34A LTR LTR
8181 chr1.64065505.64065978 MER68C LTR LTR
8182 chr1.64080753.64081208 MIRc SINE SINE
8183 chr1.64082479.64082879 LTR16B1 LTR LTR
8184 chr1.64092886.64093376 <NA> <NA> <NA>
8185 chr1.64098323.64098775 <NA> <NA> <NA>
8186 chr1.64099007.64099337 MIRc SINE SINE
8187 chr1.64112016.64112635 MIR SINE SINE
8188 chr1.64112016.64112635 L2 LINE LINE
8189 chr1.64114547.64114891 MIR3 SINE SINE
8190 chr1.64118360.64119061 AluSg SINE SINE
8191 chr1.64118360.64119061 MIRb SINE SINE
8192 chr1.64130957.64131588 L1MB5 LINE LINE
8193 chr1.64132880.64133445 L2c LINE LINE
8194 chr1.64137173.64137454 <NA> <NA> <NA>
8195 chr1.64138119.64139109 MER53 DNA DNA
8196 chr1.64138119.64139109 AluYc SINE SINE
8197 chr1.64138119.64139109 AluSz6 SINE SINE
8198 chr1.64164082.64164372 MIRb SINE SINE
8199 chr1.64171588.64172712 <NA> <NA> <NA>
8200 chr1.64184160.64184481 Tigger3b DNA DNA
8201 chr1.64186288.64186841 MLT1I LTR LTR
8202 chr1.64186288.64186841 LTR18A LTR LTR
8203 chr1.64222953.64224120 L2c LINE LINE
8204 chr1.64222953.64224120 L2c LINE LINE
8205 chr1.64228255.64228499 L2c LINE LINE
8206 chr1.64240293.64240583 L3 LINE LINE
8207 chr1.64243611.64244064 MIR SINE SINE
8208 chr1.64262365.64262785 MLT1E1A LTR LTR
8209 chr1.64263345.64264097 MLT1J2 LTR LTR
8210 chr1.64263345.64264097 LTR33C LTR LTR
8211 chr1.64269018.64269769 AluSx3 SINE SINE
8212 chr1.64302857.64303351 MLT1H1 LTR LTR
8213 chr1.64311348.64311812 MLT2B4 LTR LTR
8214 chr1.64311348.64311812 MLT1O-int LTR LTR
8215 chr1.64311348.64311812 MER96 DNA DNA
8216 chr1.64313787.64314200 AluYk4 SINE SINE
8217 chr1.64320106.64320319 MIRc SINE SINE
8218 chr1.64321300.64321556 G-rich Other Low_complexity
8219 chr1.64321300.64321556 L2c LINE LINE
8220 chr1.64343259.64343824 L2a LINE LINE
8221 chr1.64343259.64343824 L2c LINE LINE
8222 chr1.64348861.64349726 (GT)n Other Simple_repeat
8223 chr1.64357150.64357966 MIR SINE SINE
8224 chr1.64357150.64357966 (CCTC)n Other Simple_repeat
8225 chr1.64357150.64357966 (CACCCC)n Other Simple_repeat
8226 chr1.64357150.64357966 L2c LINE LINE
8227 chr1.64423614.64423888 AluSz6 SINE SINE
8228 chr1.64423614.64423888 MER49 LTR LTR
8229 chr1.64469685.64471782 MIRb SINE SINE
8230 chr1.64469685.64471782 (CGGCTC)n Other Simple_repeat
8231 chr1.64474750.64474956 MamRTE1 LINE LINE
8232 chr1.64476333.64477205 <NA> <NA> <NA>
8233 chr1.64481447.64481720 <NA> <NA> <NA>
8234 chr1.64505224.64506708 (CCGCC)n Other Simple_repeat
8235 chr1.64505224.64506708 (CGCCC)n Other Simple_repeat
8236 chr1.64505224.64506708 L2b LINE LINE
8237 chr1.64505224.64506708 MIRb SINE SINE
8238 chr1.64505224.64506708 MIR SINE SINE
8239 chr1.64514252.64514757 L3 LINE LINE
8240 chr1.64519776.64520491 Charlie19a DNA DNA
8241 chr1.64519776.64520491 LTR82A LTR LTR
8242 chr1.64539639.64540138 L2a LINE LINE
8243 chr1.64539639.64540138 L2c LINE LINE
8244 chr1.64546055.64546448 AluJb SINE SINE
8245 chr1.64572461.64573045 <NA> <NA> <NA>
8246 chr1.64574428.64574588 <NA> <NA> <NA>
8247 chr1.64576348.64576609 <NA> <NA> <NA>
8248 chr1.64598001.64598629 <NA> <NA> <NA>
8249 chr1.64601291.64601514 L3 LINE LINE
8250 chr1.64615824.64616640 MIR3 SINE SINE
8251 chr1.64615824.64616640 L2 LINE LINE
8252 chr1.64615824.64616640 L2c LINE LINE
8253 chr1.64623711.64624255 <NA> <NA> <NA>
8254 chr1.64624493.64624834 MamSINE1 SINE SINE
8255 chr1.64624493.64624834 MIRb SINE SINE
8256 chr1.64658785.64659250 L2c LINE LINE
8257 chr1.64658785.64659250 LTR16A2 LTR LTR
8258 chr1.64659646.64660019 <NA> <NA> <NA>
8259 chr1.64663618.64664098 <NA> <NA> <NA>
8260 chr1.64669185.64669681 MIRb SINE SINE
8261 chr1.64680402.64680919 AluSz SINE SINE
8262 chr1.64691467.64692066 <NA> <NA> <NA>
8263 chr1.64725538.64725874 LTR101_Mam LTR LTR
8264 chr1.64725538.64725874 MLT1I LTR LTR
8265 chr1.64734010.64734258 <NA> <NA> <NA>
8266 chr1.64744528.64746090 G-rich Other Low_complexity
8267 chr1.64744528.64746090 (CCTCCTC)n Other Simple_repeat
8268 chr1.64744528.64746090 (GGCGGC)n Other Simple_repeat
8269 chr1.64744528.64746090 MIR1_Amn SINE SINE
8270 chr1.64757229.64757803 L1MD3 LINE LINE
8271 chr1.64757229.64757803 MLT1B LTR LTR
8272 chr1.64757229.64757803 L1MD3 LINE LINE
8273 chr1.64760084.64760477 L2c LINE LINE
8274 chr1.64760084.64760477 MLT1J LTR LTR
8275 chr1.64760084.64760477 MLT1J-int LTR LTR
8276 chr1.64760084.64760477 L2c LINE LINE
8277 chr1.64811181.64811517 Tigger2b_Pri DNA DNA
8278 chr1.64823832.64824445 AluSx1 SINE SINE
8279 chr1.64829539.64830187 L1MC5 LINE LINE
8280 chr1.64834866.64835220 <NA> <NA> <NA>
8281 chr1.64837213.64837728 L2c LINE LINE
8282 chr1.64861523.64862078 <NA> <NA> <NA>
8283 chr1.64864021.64864437 <NA> <NA> <NA>
8284 chr1.64874541.64875192 Tigger2b_Pri DNA DNA
8285 chr1.64874541.64875192 ORSL DNA DNA
8286 chr1.64884686.64885086 L2b LINE LINE
8287 chr1.64890857.64891974 MIR SINE SINE
8288 chr1.64890857.64891974 MIRb SINE SINE
8289 chr1.64897873.64898826 <NA> <NA> <NA>
8290 chr1.64901004.64901248 L2c LINE LINE
8291 chr1.64917405.64917868 HAL1 LINE LINE
8292 chr1.64921357.64921578 MIRc SINE SINE
8293 chr1.64933154.64933871 MIR SINE SINE
8294 chr1.64956101.64956645 MER58B DNA DNA
8295 chr1.64956101.64956645 L2a LINE LINE
8296 chr1.64965403.64967013 (CCGCC)n Other Simple_repeat
8297 chr1.64983087.64983463 <NA> <NA> <NA>
8298 chr1.64987415.64987877 <NA> <NA> <NA>
8299 chr1.65001330.65001576 (TG)n Other Simple_repeat
8300 chr1.65002195.65003325 (GTAT)n Other Simple_repeat
8301 chr1.65002195.65003325 MIRb SINE SINE
8302 chr1.65002195.65003325 (CGG)n Other Simple_repeat
8303 chr1.65002195.65003325 (T)n Other Simple_repeat
8304 chr1.65020904.65021219 LTR33 LTR LTR
8305 chr1.65027680.65028197 LTR16B1 LTR LTR
8306 chr1.65027680.65028197 L2a LINE LINE
8307 chr1.65039522.65039855 MIRb SINE SINE
8308 chr1.65039522.65039855 MLT1D LTR LTR
8309 chr1.65066517.65067540 (CCCT)n Other Simple_repeat
8310 chr1.65066517.65067540 (TCC)n Other Simple_repeat
8311 chr1.65066517.65067540 (CCCCT)n Other Simple_repeat
8312 chr1.65066517.65067540 (GGCCC)n Other Simple_repeat
8313 chr1.65066517.65067540 (GCCCCCG)n Other Simple_repeat
8314 chr1.65067676.65068375 (A)n Other Simple_repeat
8315 chr1.65067676.65068375 (TG)n Other Simple_repeat
8316 chr1.65075329.65075864 L2 LINE LINE
8317 chr1.65075329.65075864 L2a LINE LINE
8318 chr1.65105697.65106507 L2c LINE LINE
8319 chr1.65105697.65106507 AluSx SINE SINE
8320 chr1.65105697.65106507 MER5A1 DNA DNA
8321 chr1.65112763.65113277 L2a LINE LINE
8322 chr1.65112763.65113277 L3 LINE LINE
8323 chr1.65112763.65113277 CR1-3_Croc LINE LINE
8324 chr1.65114120.65114638 AluSg SINE SINE
8325 chr1.65114120.65114638 AluJb SINE SINE
8326 chr1.65119890.65120263 MIRb SINE SINE
8327 chr1.65139993.65140418 LTR5_Hs LTR LTR
8328 chr1.65141437.65141904 <NA> <NA> <NA>
8329 chr1.65147364.65149466 (GGAGT)n Other Simple_repeat
8330 chr1.65147364.65149466 GA-rich Other Low_complexity
8331 chr1.65147364.65149466 (CCGTACC)n Other Simple_repeat
8332 chr1.65175198.65175713 <NA> <NA> <NA>
8333 chr1.65196096.65196386 <NA> <NA> <NA>
8334 chr1.65209220.65209860 AluJb SINE SINE
8335 chr1.65215663.65216583 AluSz6 SINE SINE
8336 chr1.65231706.65231991 <NA> <NA> <NA>
8337 chr1.65232475.65233135 MIRc SINE SINE
8338 chr1.65232475.65233135 LTR33A_ LTR LTR
8339 chr1.65232475.65233135 AluJo SINE SINE
8340 chr1.65247706.65248492 L3 LINE LINE
8341 chr1.65254110.65255790 (GCG)n Other Simple_repeat
8342 chr1.65254110.65255790 L2c LINE LINE
8343 chr1.65254110.65255790 L2a LINE LINE
8344 chr1.65260977.65261360 <NA> <NA> <NA>
8345 chr1.65264387.65264869 L2b LINE LINE
8346 chr1.65265510.65266446 <NA> <NA> <NA>
8347 chr1.65277712.65279741 LTR36 LTR LTR
8348 chr1.65277712.65279741 L1ME3A LINE LINE
8349 chr1.65277712.65279741 MIR3 SINE SINE
8350 chr1.65277712.65279741 (ATACAC)n Other Simple_repeat
8351 chr1.65277712.65279741 L2b LINE LINE
8352 chr1.65284140.65284624 <NA> <NA> <NA>
8353 chr1.65292850.65293464 MLT1H LTR LTR
8354 chr1.65292850.65293464 MLT1B LTR LTR
8355 chr1.65300363.65300831 MLT1J LTR LTR
8356 chr1.65309199.65310346 (CCCT)n Other Simple_repeat
8357 chr1.65309199.65310346 (CTCC)n Other Simple_repeat
8358 chr1.65309199.65310346 G-rich Other Low_complexity
8359 chr1.65316303.65316530 L2c LINE LINE
8360 chr1.65320149.65320568 MIRc SINE SINE
8361 chr1.65339917.65340425 MIR3 SINE SINE
8362 chr1.65355207.65355812 AluJb SINE SINE
8363 chr1.65371517.65371859 <NA> <NA> <NA>
8364 chr1.65393457.65393784 MamSINE1 SINE SINE
8365 chr1.65396113.65396684 L2a LINE LINE
8366 chr1.65412169.65412609 <NA> <NA> <NA>
8367 chr1.65419750.65421351 G-rich Other Low_complexity
8368 chr1.65425721.65426127 L2c LINE LINE
8369 chr1.65425721.65426127 L2a LINE LINE
8370 chr1.65429895.65430180 <NA> <NA> <NA>
8371 chr1.65430751.65431342 L2c LINE LINE
8372 chr1.65430751.65431342 L2c LINE LINE
8373 chr1.65434784.65435094 <NA> <NA> <NA>
8374 chr1.65435934.65436335 <NA> <NA> <NA>
8375 chr1.65459344.65459800 LTR41C LTR LTR
8376 chr1.65459344.65459800 LTR41C LTR LTR
8377 chr1.65459344.65459800 L2a LINE LINE
8378 chr1.65467486.65467892 L1PA6 LINE LINE
8379 chr1.65469196.65470034 <NA> <NA> <NA>
8380 chr1.65513035.65513430 <NA> <NA> <NA>
8381 chr1.65525289.65526174 <NA> <NA> <NA>
8382 chr1.65554008.65554837 L1PA7 LINE LINE
8383 chr1.65615849.65616152 <NA> <NA> <NA>
8384 chr1.65621561.65622452 LTR19A LTR LTR
8385 chr1.65687546.65688324 (CCTTCTG)n Other Simple_repeat
8386 chr1.65792212.65793732 <NA> <NA> <NA>
8387 chr1.65818075.65818258 L2a LINE LINE
8388 chr1.65821060.65821230 <NA> <NA> <NA>
8389 chr1.65848903.65849440 LTR41 LTR LTR
8390 chr1.65881122.65881379 LTR33 LTR LTR
8391 chr1.65881122.65881379 LTR16A LTR LTR
8392 chr1.65904472.65905158 MIR SINE SINE
8393 chr1.65948850.65949253 ERV3-16A3_I-int LTR LTR
8394 chr1.65952720.65953390 MIRb SINE SINE
8395 chr1.65952720.65953390 Zaphod DNA DNA
8396 chr1.65952720.65953390 MLT1D LTR LTR
8397 chr1.65958968.65959299 <NA> <NA> <NA>
8398 chr1.65959848.65960288 AluJo SINE SINE
8399 chr1.66033495.66034096 (TTTC)n Other Simple_repeat
8400 chr1.66047787.66048319 MamRTE1 LINE LINE
8401 chr1.66082938.66083600 L2 LINE LINE
8402 chr1.66082938.66083600 MIRb SINE SINE
8403 chr1.66137314.66137795 L2b LINE LINE
8404 chr1.66137314.66137795 MIRc SINE SINE
8405 chr1.66175656.66175873 <NA> <NA> <NA>
8406 chr1.66207639.66208140 <NA> <NA> <NA>
8407 chr1.66210759.66211139 <NA> <NA> <NA>
8408 chr1.66217110.66217458 LTR33 LTR LTR
8409 chr1.66217110.66217458 LTR33 LTR LTR
8410 chr1.66240987.66241399 <NA> <NA> <NA>
8411 chr1.66242749.66243129 <NA> <NA> <NA>
8412 chr1.66243371.66243934 L2c LINE LINE
8413 chr1.66251597.66251882 L2 LINE LINE
8414 chr1.66253247.66253819 MIR SINE SINE
8415 chr1.66253247.66253819 (TTTTG)n Other Simple_repeat
8416 chr1.66262276.66262724 MIR SINE SINE
8417 chr1.66262276.66262724 MIRc SINE SINE
8418 chr1.66262276.66262724 L2c LINE LINE
8419 chr1.66271293.66272236 <NA> <NA> <NA>
8420 chr1.66273723.66274040 L2b LINE LINE
8421 chr1.66273723.66274040 L2b LINE LINE
8422 chr1.66282343.66283177 MIRc SINE SINE
8423 chr1.66282343.66283177 MIRb SINE SINE
8424 chr1.66282343.66283177 L2c LINE LINE
8425 chr1.66282343.66283177 MIR SINE SINE
8426 chr1.66294792.66295269 MER112 DNA DNA
8427 chr1.66300416.66300773 MIR3 SINE SINE
8428 chr1.66300416.66300773 L2c LINE LINE
8429 chr1.66311203.66311984 MIRc SINE SINE
8430 chr1.66315752.66315999 L2c LINE LINE
8431 chr1.66331753.66332753 <NA> <NA> <NA>
8432 chr1.66356693.66356917 <NA> <NA> <NA>
8433 chr1.66360310.66360595 MER135 DNA DNA
8434 chr1.66371332.66372075 MIRb SINE SINE
8435 chr1.66374761.66375090 MIR3 SINE SINE
8436 chr1.66380958.66381327 L2a LINE LINE
8437 chr1.66436509.66437067 MIR3 SINE SINE
8438 chr1.66436509.66437067 Charlie17 DNA DNA
8439 chr1.66436509.66437067 Charlie17b DNA DNA
8440 chr1.66446299.66446871 L2a LINE LINE
8441 chr1.66450017.66450715 MLT1C LTR LTR
8442 chr1.66450017.66450715 MIRb SINE SINE
8443 chr1.66464816.66465197 MLT1L LTR LTR
8444 chr1.66466228.66467056 L1PA4 LINE LINE
8445 chr1.66477900.66478454 L2c LINE LINE
8446 chr1.66477900.66478454 L2c LINE LINE
8447 chr1.66490144.66490451 <NA> <NA> <NA>
8448 chr1.66490851.66491058 <NA> <NA> <NA>
8449 chr1.66494227.66494867 MLT1A0 LTR LTR
8450 chr1.66494227.66494867 MLT1J1 LTR LTR
8451 chr1.66503884.66504298 (TTCTAT)n Other Simple_repeat
8452 chr1.66503884.66504298 MER45A DNA DNA
8453 chr1.66505736.66506104 AluJr SINE SINE
8454 chr1.66505736.66506104 LTR8B LTR LTR
8455 chr1.66506263.66506819 LTR8B LTR LTR
8456 chr1.66506263.66506819 AluJr SINE SINE
8457 chr1.66506263.66506819 MER102c DNA DNA
8458 chr1.66523524.66524024 ERVL-E-int LTR LTR
8459 chr1.66533086.66534571 (GA)n Other Simple_repeat
8460 chr1.66533086.66534571 A-rich Other Low_complexity
8461 chr1.66540630.66541231 MIR3 SINE SINE
8462 chr1.66540630.66541231 L2a LINE LINE
8463 chr1.66542412.66543084 MER44D DNA DNA
8464 chr1.66542412.66543084 MIRc SINE SINE
8465 chr1.66543308.66543873 MIR3 SINE SINE
8466 chr1.66543308.66543873 MIRc SINE SINE
8467 chr1.66545084.66545459 MIRb SINE SINE
8468 chr1.66556132.66556403 <NA> <NA> <NA>
8469 chr1.66559572.66559825 MLT1L LTR LTR
8470 chr1.66563231.66564628 MIR3 SINE SINE
8471 chr1.66563231.66564628 MIRc SINE SINE
8472 chr1.66575617.66576403 MIR3 SINE SINE
8473 chr1.66575617.66576403 MIRb SINE SINE
8474 chr1.66576615.66577069 (CTTCTC)n Other Simple_repeat
8475 chr1.66598684.66598966 MSTA LTR LTR
8476 chr1.66598684.66598966 MER119 DNA DNA
8477 chr1.66605517.66605777 <NA> <NA> <NA>
8478 chr1.66623649.66624968 MIRc SINE SINE
8479 chr1.66654758.66654908 <NA> <NA> <NA>
8480 chr1.66676811.66677572 (AC)n Other Simple_repeat
8481 chr1.66676811.66677572 L2b LINE LINE
8482 chr1.66691682.66691915 AluSg SINE SINE
8483 chr1.66699071.66699538 L2 LINE LINE
8484 chr1.66725770.66726496 L1MEc LINE LINE
8485 chr1.66725770.66726496 LTR41 LTR LTR
8486 chr1.66725770.66726496 LTR41 LTR LTR
8487 chr1.66725770.66726496 L1ME1 LINE LINE
8488 chr1.66752027.66752781 MIRb SINE SINE
8489 chr1.66757927.66758509 MER58B DNA DNA
8490 chr1.66757927.66758509 MIR SINE SINE
8491 chr1.66924315.66925867 AluSx SINE SINE
8492 chr1.66924315.66925867 GA-rich Other Low_complexity
8493 chr1.66924315.66925867 (GGC)n Other Simple_repeat
8494 chr1.66924315.66925867 MIR3 SINE SINE
8495 chr1.66929986.66931008 (GGCAGC)n Other Simple_repeat
8496 chr1.66937930.66938111 <NA> <NA> <NA>
8497 chr1.66944488.66945218 AluJb SINE SINE
8498 chr1.66944488.66945218 MER2 DNA DNA
8499 chr1.66951391.66951975 AluJo SINE SINE
8500 chr1.66951391.66951975 AluJo SINE SINE
8501 chr1.66951391.66951975 MIRb SINE SINE
8502 chr1.66996108.66996714 MIRb SINE SINE
8503 chr1.67001718.67002400 <NA> <NA> <NA>
8504 chr1.67013601.67013814 LTR49-int LTR LTR
8505 chr1.67013601.67013814 LTR49-int LTR LTR
8506 chr1.67019587.67020344 <NA> <NA> <NA>
8507 chr1.67022302.67022560 L2b LINE LINE
8508 chr1.67031011.67031516 L2c LINE LINE
8509 chr1.67031011.67031516 MIRc SINE SINE
8510 chr1.67052810.67054589 (GCCC)n Other Simple_repeat
8511 chr1.67052810.67054589 (GCC)n Other Simple_repeat
8512 chr1.67060776.67061096 MER65B LTR LTR
8513 chr1.67126049.67126541 MIR3 SINE SINE
8514 chr1.67126049.67126541 L1MEd LINE LINE
8515 chr1.67126049.67126541 L1MEc LINE LINE
8516 chr1.67148902.67149657 L2c LINE LINE
8517 chr1.67166225.67166557 <NA> <NA> <NA>
8518 chr1.67191209.67192710 L2a LINE LINE
8519 chr1.67191209.67192710 MER65D LTR LTR
8520 chr1.67191209.67192710 L2a LINE LINE
8521 chr1.67213287.67213530 MIR SINE SINE
8522 chr1.67213287.67213530 Tigger3a DNA DNA
8523 chr1.67307280.67308659 Charlie7 DNA DNA
8524 chr1.67307280.67308659 MIR SINE SINE
8525 chr1.67307280.67308659 (CCGCC)n Other Simple_repeat
8526 chr1.67307280.67308659 (CCCAGC)n Other Simple_repeat
8527 chr1.67307280.67308659 (GCGCGGA)n Other Simple_repeat
8528 chr1.67307280.67308659 (TA)n Other Simple_repeat
8529 chr1.67307280.67308659 MIRc SINE SINE
8530 chr1.67314476.67314998 MIRb SINE SINE
8531 chr1.67316629.67317458 L2b LINE LINE
8532 chr1.67316629.67317458 L2c LINE LINE
8533 chr1.67316629.67317458 MLT1D LTR LTR
8534 chr1.67336751.67337124 MIRb SINE SINE
8535 chr1.67336751.67337124 MIRb SINE SINE
8536 chr1.67339602.67340704 MIRb SINE SINE
8537 chr1.67339602.67340704 MIRc SINE SINE
8538 chr1.67347569.67348479 MIR3 SINE SINE
8539 chr1.67355836.67356362 L2a LINE LINE
8540 chr1.67367623.67368312 <NA> <NA> <NA>
8541 chr1.67393105.67394199 MIR3 SINE SINE
8542 chr1.67399867.67400571 MER41B LTR LTR
8543 chr1.67399867.67400571 AluSx SINE SINE
8544 chr1.67399867.67400571 MER41B LTR LTR
8545 chr1.67404303.67404536 AluSx1 SINE SINE
8546 chr1.67429310.67431305 <NA> <NA> <NA>
8547 chr1.67439220.67439847 MIRb SINE SINE
8548 chr1.67439220.67439847 L2c LINE LINE
8549 chr1.67441184.67441673 <NA> <NA> <NA>
8550 chr1.67460715.67461475 <NA> <NA> <NA>
8551 chr1.67463416.67464114 L2b LINE LINE
8552 chr1.67479184.67479521 <NA> <NA> <NA>
8553 chr1.67489735.67490082 MER102a DNA DNA
8554 chr1.67489735.67490082 AluJr SINE SINE
8555 chr1.67500414.67500881 Charlie1a DNA DNA
8556 chr1.67500414.67500881 MIR3 SINE SINE
8557 chr1.67506754.67507165 HAL1 LINE LINE
8558 chr1.67506754.67507165 AluSc8 SINE SINE
8559 chr1.67532489.67532900 MIRb SINE SINE
8560 chr1.67532489.67532900 MIR3 SINE SINE
8561 chr1.67532489.67532900 MIRc SINE SINE
8562 chr1.67534649.67535015 MIRc SINE SINE
8563 chr1.67535343.67535911 L2a LINE LINE
8564 chr1.67535343.67535911 AluSz6 SINE SINE
8565 chr1.67555476.67555984 (GAGGCA)n Other Simple_repeat
8566 chr1.67559134.67559622 <NA> <NA> <NA>
8567 chr1.67561515.67562277 <NA> <NA> <NA>
8568 chr1.67570251.67570917 MIRb SINE SINE
8569 chr1.67575878.67576170 <NA> <NA> <NA>
8570 chr1.67580782.67581467 (CTGTCT)n Other Simple_repeat
8571 chr1.67580782.67581467 L2a LINE LINE
8572 chr1.67590395.67590940 MIR SINE SINE
8573 chr1.67598788.67599456 L2b LINE LINE
8574 chr1.67598788.67599456 (TTCA)n Other Simple_repeat
8575 chr1.67598788.67599456 MIRb SINE SINE
8576 chr1.67604634.67605105 (TGCC)n Other Simple_repeat
8577 chr1.67604634.67605105 (AGACAG)n Other Simple_repeat
8578 chr1.67608754.67609020 L2a LINE LINE
8579 chr1.67626482.67626880 L2a LINE LINE
8580 chr1.67626482.67626880 MLT1I LTR LTR
8581 chr1.67629418.67629846 MIRb SINE SINE
8582 chr1.67629418.67629846 MIR SINE SINE
8583 chr1.67629418.67629846 MIR3 SINE SINE
8584 chr1.67646155.67647359 <NA> <NA> <NA>
8585 chr1.67684924.67687344 (CCCGCC)n Other Simple_repeat
8586 chr1.67694986.67695437 (TG)n Other Simple_repeat
8587 chr1.67694986.67695437 L2c LINE LINE
8588 chr1.67700429.67701409 L2c LINE LINE
8589 chr1.67706945.67707432 AluSp SINE SINE
8590 chr1.67710479.67710999 L2c LINE LINE
8591 chr1.67713460.67713773 MIR SINE SINE
8592 chr1.67714358.67714674 MIRc SINE SINE
8593 chr1.67714358.67714674 LTR67B LTR LTR
8594 chr1.67717989.67718133 MIR SINE SINE
8595 chr1.67722278.67722789 <NA> <NA> <NA>
8596 chr1.67723698.67724029 MIR SINE SINE
8597 chr1.67735975.67736676 <NA> <NA> <NA>
8598 chr1.67738448.67738852 L2b LINE LINE
8599 chr1.67738448.67738852 L2 LINE LINE
8600 chr1.67738448.67738852 AluJr4 SINE SINE
8601 chr1.67747758.67748119 <NA> <NA> <NA>
8602 chr1.67748731.67748966 <NA> <NA> <NA>
8603 chr1.67749591.67750361 <NA> <NA> <NA>
8604 chr1.67752332.67752649 MER117 DNA DNA
8605 chr1.67752332.67752649 MER117 DNA DNA
8606 chr1.67759799.67760704 MIR1_Amn SINE SINE
8607 chr1.67766231.67766835 <NA> <NA> <NA>
8608 chr1.67771004.67772284 (GA)n Other Simple_repeat
8609 chr1.67771004.67772284 LTR78 LTR LTR
8610 chr1.67771004.67772284 MIRb SINE SINE
8611 chr1.67771004.67772284 MIRb SINE SINE
8612 chr1.67771004.67772284 Charlie4z DNA DNA
8613 chr1.67791630.67792262 L2a LINE LINE
8614 chr1.67802419.67802859 <NA> <NA> <NA>
8615 chr1.67803472.67804144 MIRb SINE SINE
8616 chr1.67803472.67804144 (AACAA)n Other Simple_repeat
8617 chr1.67812339.67813053 MIRc SINE SINE
8618 chr1.67812339.67813053 MIR3 SINE SINE
8619 chr1.67812339.67813053 MER3 DNA DNA
8620 chr1.67812339.67813053 MIR3 SINE SINE
8621 chr1.67831879.67833776 (CTTC)n Other Simple_repeat
8622 chr1.67831879.67833776 (CGCCG)n Other Simple_repeat
8623 chr1.67831879.67833776 (CCGCCG)n Other Simple_repeat
8624 chr1.67831879.67833776 (CCT)n Other Simple_repeat
8625 chr1.67838601.67839036 <NA> <NA> <NA>
8626 chr1.67840344.67841206 L2a LINE LINE
8627 chr1.67840344.67841206 Charlie7 DNA DNA
8628 chr1.67850110.67851274 MIRb SINE SINE
8629 chr1.67853609.67854068 MLT1N2 LTR LTR
8630 chr1.67880024.67880724 MIRc SINE SINE
8631 chr1.67880024.67880724 L2b LINE LINE
8632 chr1.67883153.67883484 (CCAT)n Other Simple_repeat
8633 chr1.67883153.67883484 L2a LINE LINE
8634 chr1.67888617.67889103 L2b LINE LINE
8635 chr1.67889904.67890645 L2 LINE LINE
8636 chr1.67889904.67890645 MIRc SINE SINE
8637 chr1.67897505.67898689 (GCAG)n Other Simple_repeat
8638 chr1.67897505.67898689 LTR32 LTR LTR
8639 chr1.67937595.67938198 LTR18B LTR LTR
8640 chr1.67945838.67946639 MLT1B LTR LTR
8641 chr1.67948236.67948408 L2c LINE LINE
8642 chr1.67978985.67979762 L2c LINE LINE
8643 chr1.68015387.68015680 MIR SINE SINE
8644 chr1.68050253.68050809 <NA> <NA> <NA>
8645 chr1.68051482.68051924 <NA> <NA> <NA>
8646 chr1.68065875.68066304 L2c LINE LINE
8647 chr1.68093743.68094119 <NA> <NA> <NA>
8648 chr1.68104088.68104517 LTR84b LTR LTR
8649 chr1.68104088.68104517 CR1-3_Croc LINE LINE
8650 chr1.68111782.68112330 MER91A DNA DNA
8651 chr1.68113017.68113336 <NA> <NA> <NA>
8652 chr1.68119762.68120684 LTR16C LTR LTR
8653 chr1.68119762.68120684 MIR3 SINE SINE
8654 chr1.68119762.68120684 MIR1_Amn SINE SINE
8655 chr1.68121420.68121853 <NA> <NA> <NA>
8656 chr1.68127867.68129279 MIR SINE SINE
8657 chr1.68127867.68129279 AluSz6 SINE SINE
8658 chr1.68136014.68136486 MER103C DNA DNA
8659 chr1.68140553.68140871 MamRep137 DNA DNA
8660 chr1.68141096.68142461 <NA> <NA> <NA>
8661 chr1.68147557.68148154 <NA> <NA> <NA>
8662 chr1.68149403.68149719 <NA> <NA> <NA>
8663 chr1.68161800.68162233 <NA> <NA> <NA>
8664 chr1.68166424.68167001 MIR SINE SINE
8665 chr1.68167319.68168098 <NA> <NA> <NA>
8666 chr1.68173337.68175061 (CT)n Other Simple_repeat
8667 chr1.68176059.68176282 <NA> <NA> <NA>
8668 chr1.68178019.68178397 MIR SINE SINE
8669 chr1.68178019.68178397 L2c LINE LINE
8670 chr1.68185662.68186199 MER1B DNA DNA
8671 chr1.68185662.68186199 MER21B LTR LTR
8672 chr1.68197583.68198237 <NA> <NA> <NA>
8673 chr1.68203409.68203754 L3 LINE LINE
8674 chr1.68204892.68205461 L2c LINE LINE
8675 chr1.68205948.68206266 L2 LINE LINE
8676 chr1.68205948.68206266 L3 LINE LINE
8677 chr1.68206937.68207579 (AATAC)n Other Simple_repeat
8678 chr1.68213815.68214332 MamRTE1 LINE LINE
8679 chr1.68213815.68214332 (AC)n Other Simple_repeat
8680 chr1.68218465.68218879 <NA> <NA> <NA>
8681 chr1.68221056.68221706 <NA> <NA> <NA>
8682 chr1.68221963.68222374 <NA> <NA> <NA>
8683 chr1.68230369.68233045 (GT)n Other Simple_repeat
8684 chr1.68230369.68233045 GA-rich Other Low_complexity
8685 chr1.68230369.68233045 (CCCAC)n Other Simple_repeat
8686 chr1.68230369.68233045 (CTCC)n Other Simple_repeat
8687 chr1.68230369.68233045 (CCTT)n Other Simple_repeat
8688 chr1.68234214.68234387 Tigger3a DNA DNA
8689 chr1.68269726.68270262 MLT1G1 LTR LTR
8690 chr1.68269726.68270262 MIRc SINE SINE
8691 chr1.68291892.68292455 <NA> <NA> <NA>
8692 chr1.68293121.68294645 MIRc SINE SINE
8693 chr1.68293121.68294645 (AC)n Other Simple_repeat
8694 chr1.68305067.68305366 L2a LINE LINE
8695 chr1.68307934.68308516 (CATCAGT)n Other Simple_repeat
8696 chr1.68313797.68314585 <NA> <NA> <NA>
8697 chr1.68317580.68317818 MLT1J2 LTR LTR
8698 chr1.68320089.68320660 MIR3 SINE SINE
8699 chr1.68321180.68321504 MIR SINE SINE
8700 chr1.68331097.68331683 MamRep434 DNA DNA
8701 chr1.68342485.68343195 MIRc SINE SINE
8702 chr1.68342485.68343195 MIR3 SINE SINE
8703 chr1.68373908.68374562 <NA> <NA> <NA>
8704 chr1.68378376.68378595 MLT1E2-int LTR LTR
8705 chr1.68384126.68385382 MER41B LTR LTR
8706 chr1.68431239.68431787 MIRc SINE SINE
8707 chr1.68442916.68443612 L2a LINE LINE
8708 chr1.68442916.68443612 MER20B DNA DNA
8709 chr1.68454647.68454920 MLT1H LTR LTR
8710 chr1.68464845.68465178 L2a LINE LINE
8711 chr1.68496456.68497564 (GCTGG)n Other Simple_repeat
8712 chr1.68542412.68542872 (TTTTTTC)n Other Simple_repeat
8713 chr1.68542412.68542872 MLT1O LTR LTR
8714 chr1.68600026.68600507 <NA> <NA> <NA>
8715 chr1.68623603.68624914 MIRc SINE SINE
8716 chr1.68623603.68624914 MLT1D LTR LTR
8717 chr1.68633182.68633410 <NA> <NA> <NA>
8718 chr1.68703889.68704664 L2a LINE LINE
8719 chr1.68703889.68704664 L2b LINE LINE
8720 chr1.68703889.68704664 MIR SINE SINE
8721 chr1.68724983.68725739 (TG)n Other Simple_repeat
8722 chr1.68808350.68808614 <NA> <NA> <NA>
8723 chr1.68813928.68814539 MLT1D LTR LTR
8724 chr1.68819276.68820668 LTR16 LTR LTR
8725 chr1.68819276.68820668 L2b LINE LINE
8726 chr1.68819276.68820668 L1MB8 LINE LINE
8727 chr1.68819276.68820668 L2c LINE LINE
8728 chr1.68857985.68858549 L1PA10 LINE LINE
8729 chr1.68916180.68916944 MLT1D LTR LTR
8730 chr1.68958921.68959878 MIR3 SINE SINE
8731 chr1.68973929.68974428 MIR3 SINE SINE
8732 chr1.69055151.69055846 L2c LINE LINE
8733 chr1.69055151.69055846 MER61E LTR LTR
8734 chr1.69104925.69105402 MER58A DNA DNA
8735 chr1.69104925.69105402 MIRb SINE SINE
8736 chr1.69244151.69244464 LTR79 LTR LTR
8737 chr1.69315552.69316442 L1M2 LINE LINE
8738 chr1.69404558.69405094 L2a LINE LINE
8739 chr1.69404558.69405094 LTR33A_ LTR LTR
8740 chr1.69522993.69523356 LTR78 LTR LTR
8741 chr1.69524108.69524318 MER21C LTR LTR
8742 chr1.69524108.69524318 MER50 LTR LTR
8743 chr1.69566924.69568657 (GA)n Other Simple_repeat
8744 chr1.69566924.69568657 (GT)n Other Simple_repeat
8745 chr1.69566924.69568657 (CGC)n Other Simple_repeat
8746 chr1.69566924.69568657 (CTC)n Other Simple_repeat
8747 chr1.69646540.69646901 MER5A DNA DNA
8748 chr1.69684462.69684982 L1MDa LINE LINE
8749 chr1.69694053.69694618 MSTB LTR LTR
8750 chr1.69699591.69699980 LTR78 LTR LTR
8751 chr1.69699591.69699980 LTR78 LTR LTR
8752 chr1.69700489.69701040 <NA> <NA> <NA>
8753 chr1.69707189.69707415 LTR16C LTR LTR
8754 chr1.69710356.69711045 L2c LINE LINE
8755 chr1.69737426.69738096 THE1B LTR LTR
8756 chr1.69737426.69738096 LTR55 LTR LTR
8757 chr1.69747298.69747519 L2c LINE LINE
8758 chr1.69947926.69948498 MER44B DNA DNA
8759 chr1.69947926.69948498 L1MB1 LINE LINE
8760 chr1.69976729.69977598 L2c LINE LINE
8761 chr1.69976729.69977598 L2c LINE LINE
8762 chr1.69976729.69977598 MLT1I LTR LTR
8763 chr1.69982834.69983549 LTR16A LTR LTR
8764 chr1.70034469.70034744 MIR3 SINE SINE
8765 chr1.70042295.70042701 <NA> <NA> <NA>
8766 chr1.70043663.70044240 <NA> <NA> <NA>
8767 chr1.70048691.70048972 <NA> <NA> <NA>
8768 chr1.70075926.70076250 <NA> <NA> <NA>
8769 chr1.70132912.70133364 Plat_L3 LINE LINE
8770 chr1.70132912.70133364 AluSz SINE SINE
8771 chr1.70134189.70134648 <NA> <NA> <NA>
8772 chr1.70140671.70141239 <NA> <NA> <NA>
8773 chr1.70156599.70156843 MER44B DNA DNA
8774 chr1.70156599.70156843 MER44B DNA DNA
8775 chr1.70157595.70157917 MIRb SINE SINE
8776 chr1.70157595.70157917 L2b LINE LINE
8777 chr1.70157595.70157917 AluJb SINE SINE
8778 chr1.70204920.70206222 <NA> <NA> <NA>
8779 chr1.70221237.70222152 (GCG)n Other Simple_repeat
8780 chr1.70221237.70222152 (GCG)n Other Simple_repeat
8781 chr1.70227490.70227920 <NA> <NA> <NA>
8782 chr1.70247870.70248099 L1MB8 LINE LINE
8783 chr1.70257291.70257843 AluY SINE SINE
8784 chr1.70257291.70257843 Tigger3b DNA DNA
8785 chr1.70319557.70320183 AluSq2 SINE SINE
8786 chr1.70319557.70320183 L2b LINE LINE
8787 chr1.70319557.70320183 L2b LINE LINE
8788 chr1.70353544.70355164 L2b LINE LINE
8789 chr1.70371370.70371949 HERVH-int LTR LTR
8790 chr1.70373458.70373925 HERVH-int LTR LTR
8791 chr1.70373458.70373925 LTR7 LTR LTR
8792 chr1.70410613.70411782 <NA> <NA> <NA>
8793 chr1.70427898.70428444 AluSx1 SINE SINE
8794 chr1.70427898.70428444 L1MA6 LINE LINE
8795 chr1.70438606.70438906 (TG)n Other Simple_repeat
8796 chr1.70459787.70460450 AluJo SINE SINE
8797 chr1.70459787.70460450 THE1D-int LTR LTR
8798 chr1.70459787.70460450 LTR5_Hs LTR LTR
8799 chr1.70460798.70461539 LTR5_Hs LTR LTR
8800 chr1.70460798.70461539 THE1D-int LTR LTR
8801 chr1.70486901.70488283 L1M1 LINE LINE
8802 chr1.70486901.70488283 THE1D LTR LTR
8803 chr1.70497238.70497508 MER63A DNA DNA
8804 chr1.70504272.70505329 FLAM_C SINE SINE
8805 chr1.70504272.70505329 MIRb SINE SINE
8806 chr1.70509996.70510683 (TTTTT)n Other Simple_repeat
8807 chr1.70509996.70510683 AluSz SINE SINE
8808 chr1.70528650.70529166 (GA)n Other Simple_repeat
8809 chr1.70536773.70537319 MLT1N2 LTR LTR
8810 chr1.70553290.70553739 L2c LINE LINE
8811 chr1.70666712.70667045 <NA> <NA> <NA>
8812 chr1.70667786.70668182 <NA> <NA> <NA>
8813 chr1.70670098.70670383 MSTA LTR LTR
8814 chr1.70685297.70685932 L1PB4 LINE LINE
8815 chr1.70685297.70685932 L1PB4 LINE LINE
8816 chr1.70685297.70685932 L1PB4 LINE LINE
8817 chr1.70706389.70706956 LTR1B0 LTR LTR
8818 chr1.70727901.70728299 L1PA11 LINE LINE
8819 chr1.70818282.70819689 <NA> <NA> <NA>
8820 chr1.70840410.70840842 (T)n Other Simple_repeat
8821 chr1.70846973.70847320 <NA> <NA> <NA>
8822 chr1.70871644.70872300 <NA> <NA> <NA>
8823 chr1.70874886.70875228 AmnSINE2 SINE SINE
8824 chr1.70891078.70891907 L2c LINE LINE
8825 chr1.70891078.70891907 Tigger19a DNA DNA
8826 chr1.70899769.70900047 <NA> <NA> <NA>
8827 chr1.70907758.70908177 ERVL-E-int LTR LTR
8828 chr1.70934079.70934827 MIRb SINE SINE
8829 chr1.70934079.70934827 MIRc SINE SINE
8830 chr1.70941532.70942549 L2c LINE LINE
8831 chr1.70941532.70942549 MIR3 SINE SINE
8832 chr1.70941532.70942549 MLT1J2 LTR LTR
8833 chr1.70941532.70942549 MLT1J2 LTR LTR
8834 chr1.70941532.70942549 L2c LINE LINE
8835 chr1.70961426.70961697 <NA> <NA> <NA>
8836 chr1.71013568.71014439 AluSp SINE SINE
8837 chr1.71013568.71014439 L1M5 LINE LINE
8838 chr1.71013568.71014439 MER33 DNA DNA
8839 chr1.71019195.71019681 <NA> <NA> <NA>
8840 chr1.71046402.71048287 (GCG)n Other Simple_repeat
8841 chr1.71049883.71050281 <NA> <NA> <NA>
8842 chr1.71054344.71054999 AluJb SINE SINE
8843 chr1.71080240.71081497 <NA> <NA> <NA>
8844 chr1.71086230.71086666 FordPrefect DNA DNA
8845 chr1.71089992.71090242 <NA> <NA> <NA>
8846 chr1.71228796.71229389 <NA> <NA> <NA>
8847 chr1.71240498.71240992 MIR SINE SINE
8848 chr1.71240498.71240992 LTR86B2 LTR LTR
8849 chr1.71307578.71307817 LTR67B LTR LTR
8850 chr1.71324719.71325337 MLT1F1-int LTR LTR
8851 chr1.71324719.71325337 MLT1F1 LTR LTR
8852 chr1.71445739.71446062 <NA> <NA> <NA>
8853 chr1.71462948.71463718 L2a LINE LINE
8854 chr1.71462948.71463718 MLT1I LTR LTR
8855 chr1.71466536.71466965 L2a LINE LINE
8856 chr1.71521601.71522102 <NA> <NA> <NA>
8857 chr1.71542232.71542616 MIR3 SINE SINE
8858 chr1.71557116.71557539 <NA> <NA> <NA>
8859 chr1.71638213.71638528 MIRb SINE SINE
8860 chr1.71738236.71738717 <NA> <NA> <NA>
8861 chr1.71776915.71777490 MER103C DNA DNA
8862 chr1.71776915.71777490 MIR SINE SINE
8863 chr1.71786334.71786773 MLT1G LTR LTR
8864 chr1.71831869.71832449 L2b LINE LINE
8865 chr1.71831869.71832449 MamRTE1 LINE LINE
8866 chr1.71834887.71835231 (CA)n Other Simple_repeat
8867 chr1.71834887.71835231 MLT1H LTR LTR
8868 chr1.71837014.71837532 MIRb SINE SINE
8869 chr1.71837014.71837532 L3b LINE LINE
8870 chr1.71861102.71861520 MIR SINE SINE
8871 chr1.71973980.71974230 <NA> <NA> <NA>
8872 chr1.71987134.71987536 <NA> <NA> <NA>
8873 chr1.72000722.72001229 MER61E LTR LTR
8874 chr1.72010206.72010537 <NA> <NA> <NA>
8875 chr1.72011747.72012020 L2c LINE LINE
8876 chr1.72062580.72062873 <NA> <NA> <NA>
8877 chr1.72177838.72178798 (T)n Other Simple_repeat
8878 chr1.72177838.72178798 L1PREC2 LINE LINE
8879 chr1.72282126.72285331 (T)n Other Simple_repeat
8880 chr1.72282126.72285331 (CCTCC)n Other Simple_repeat
8881 chr1.72282126.72285331 (CCT)n Other Simple_repeat
8882 chr1.72282126.72285331 (GGC)n Other Simple_repeat
8883 chr1.72282126.72285331 (CAG)n Other Simple_repeat
8884 chr1.72282126.72285331 A-rich Other Low_complexity
8885 chr1.72397852.72398161 <NA> <NA> <NA>
8886 chr1.72498383.72498795 MamTip3 DNA DNA
8887 chr1.72526997.72527478 <NA> <NA> <NA>
8888 chr1.72557369.72557861 OldhAT1 DNA DNA
8889 chr1.72557369.72557861 LTR50 LTR LTR
8890 chr1.72600940.72601455 L1MB7 LINE LINE
8891 chr1.72600940.72601455 L2 LINE LINE
8892 chr1.72600940.72601455 AluJb SINE SINE
8893 chr1.72623321.72623753 LTR50 LTR LTR
8894 chr1.72636718.72636981 HERVIP10FH-int LTR LTR
8895 chr1.72724865.72725691 L1PA13 LINE LINE
8896 chr1.72777765.72778210 <NA> <NA> <NA>
8897 chr1.72827094.72827752 L2c LINE LINE
8898 chr1.72845360.72845814 LTR35 LTR LTR
8899 chr1.72851698.72851960 MamGypsy2-I LTR LTR
8900 chr1.72851698.72851960 MamGypsy2-I LTR LTR
8901 chr1.72915515.72916014 (GT)n Other Simple_repeat
8902 chr1.72986449.72986931 <NA> <NA> <NA>
8903 chr1.73033789.73034588 <NA> <NA> <NA>
8904 chr1.73097791.73098264 <NA> <NA> <NA>
8905 chr1.73144216.73144733 <NA> <NA> <NA>
8906 chr1.73300749.73301451 MER67A LTR LTR
8907 chr1.73300749.73301451 MLT1I LTR LTR
8908 chr1.73411570.73412239 <NA> <NA> <NA>
8909 chr1.73592933.73594111 MIR3 SINE SINE
8910 chr1.73604741.73605033 <NA> <NA> <NA>
8911 chr1.73673606.73674749 L2a LINE LINE
8912 chr1.73943320.73943640 <NA> <NA> <NA>
8913 chr1.73979757.73981227 MIRb SINE SINE
8914 chr1.73998291.73999018 MER5A1 DNA DNA
8915 chr1.74004557.74004965 <NA> <NA> <NA>
8916 chr1.74061574.74062015 L1PA15 LINE LINE
8917 chr1.74061574.74062015 AluJb SINE SINE
8918 chr1.74075305.74076025 AluSx SINE SINE
8919 chr1.74075305.74076025 MLT1J LTR LTR
8920 chr1.74194079.74194201 AluJo SINE SINE
8921 chr1.74197886.74198759 <NA> <NA> <NA>
8922 chr1.74205069.74205713 L3 LINE LINE
8923 chr1.74234962.74235602 <NA> <NA> <NA>
8924 chr1.74245238.74245951 AmnSINE1 SINE SINE
8925 chr1.74313408.74313767 <NA> <NA> <NA>
8926 chr1.74319066.74319303 MLT1F2 LTR LTR
8927 chr1.74323876.74324465 L2 LINE LINE
8928 chr1.74323876.74324465 MER54A LTR LTR
8929 chr1.74334234.74334655 MIR SINE SINE
8930 chr1.74363104.74363676 <NA> <NA> <NA>
8931 chr1.74388849.74389189 <NA> <NA> <NA>
8932 chr1.74392982.74393139 <NA> <NA> <NA>
8933 chr1.74396714.74397471 HERVP71A-int LTR LTR
8934 chr1.74396714.74397471 LTR18B LTR LTR
8935 chr1.74396714.74397471 GA-rich Other Low_complexity
8936 chr1.74396714.74397471 HERVP71A-int LTR LTR
8937 chr1.74412275.74412751 MLT1H2 LTR LTR
8938 chr1.74412275.74412751 AluSz SINE SINE
8939 chr1.74415885.74416353 <NA> <NA> <NA>
8940 chr1.74420388.74421342 MER85 DNA DNA
8941 chr1.74422491.74423096 MIRb SINE SINE
8942 chr1.74422491.74423096 X9_LINE LINE LINE
8943 chr1.74425791.74426941 (TCTT)n Other Simple_repeat
8944 chr1.74463466.74464404 MIR3 SINE SINE
8945 chr1.74463466.74464404 L3b LINE LINE
8946 chr1.74470125.74471341 <NA> <NA> <NA>
8947 chr1.74474362.74475145 (CA)n Other Simple_repeat
8948 chr1.74502516.74502846 MIRb SINE SINE
8949 chr1.74504061.74504496 <NA> <NA> <NA>
8950 chr1.74508571.74508814 MIRb SINE SINE
8951 chr1.74512396.74512947 L2a LINE LINE
8952 chr1.74522163.74522543 UCON25 Other Unknown
8953 chr1.74527560.74528318 L2c LINE LINE
8954 chr1.74571916.74572255 <NA> <NA> <NA>
8955 chr1.74610036.74610454 L2a LINE LINE
8956 chr1.74623689.74624437 L2c LINE LINE
8957 chr1.74628038.74628402 Tigger2b_Pri DNA DNA
8958 chr1.74629400.74629675 <NA> <NA> <NA>
8959 chr1.74650581.74650939 MER44B DNA DNA
8960 chr1.74650581.74650939 (TG)n Other Simple_repeat
8961 chr1.74650581.74650939 A-rich Other Low_complexity
8962 chr1.74673398.74674171 (AC)n Other Simple_repeat
8963 chr1.74689927.74690524 L2c LINE LINE
8964 chr1.74693365.74693783 L2a LINE LINE
8965 chr1.74712881.74713319 <NA> <NA> <NA>
8966 chr1.74713933.74714139 MIRb SINE SINE
8967 chr1.74717497.74717953 MIR SINE SINE
8968 chr1.74717497.74717953 L2c LINE LINE
8969 chr1.74729926.74730392 (CT)n Other Simple_repeat
8970 chr1.74732555.74733899 G-rich Other Low_complexity
8971 chr1.74732555.74733899 MER5A1 DNA DNA
8972 chr1.74732555.74733899 L3 LINE LINE
8973 chr1.74753234.74753488 <NA> <NA> <NA>
8974 chr1.74765198.74765688 MER91C DNA DNA
8975 chr1.74765198.74765688 A-rich Other Low_complexity
8976 chr1.74802837.74803454 AluSg SINE SINE
8977 chr1.74802837.74803454 MER85 DNA DNA
8978 chr1.74812678.74813111 LTR78 LTR LTR
8979 chr1.74829425.74829887 <NA> <NA> <NA>
8980 chr1.74834222.74834526 <NA> <NA> <NA>
8981 chr1.74937276.74937630 <NA> <NA> <NA>
8982 chr1.74965821.74966009 <NA> <NA> <NA>
8983 chr1.75053369.75053649 LTR41 LTR LTR
8984 chr1.75084043.75084526 MER44C DNA DNA
8985 chr1.75092176.75092633 MER61C LTR LTR
8986 chr1.75092176.75092633 LTR27B LTR LTR
8987 chr1.75101735.75102020 MamRTE1 LINE LINE
8988 chr1.75130242.75130739 <NA> <NA> <NA>
8989 chr1.75130837.75131276 <NA> <NA> <NA>
8990 chr1.75136212.75136876 <NA> <NA> <NA>
8991 chr1.75137190.75137573 <NA> <NA> <NA>
8992 chr1.75203574.75204083 (T)n Other Simple_repeat
8993 chr1.75233285.75233728 L1PB4 LINE LINE
8994 chr1.75265661.75266168 L1MA4A LINE LINE
8995 chr1.75291996.75292635 AluY SINE SINE
8996 chr1.75291996.75292635 L2b LINE LINE
8997 chr1.75328797.75329219 ERV3-16A3_LTR LTR LTR
8998 chr1.75328797.75329219 L1PA15 LINE LINE
8999 chr1.75328797.75329219 LTR16A LTR LTR
9000 chr1.75333759.75334077 L2a LINE LINE
9001 chr1.75345584.75346266 <NA> <NA> <NA>
9002 chr1.75371990.75372237 AluSz SINE SINE
9003 chr1.75375809.75376387 L1PA17 LINE LINE
9004 chr1.75375809.75376387 L1PA2 LINE LINE
9005 chr1.75412525.75413058 MER44D DNA DNA
9006 chr1.75424252.75424641 AluSz SINE SINE
9007 chr1.75427611.75428316 MIR SINE SINE
9008 chr1.75427611.75428316 MLT1I LTR LTR
9009 chr1.75430476.75430858 MER5A DNA DNA
9010 chr1.75449965.75450721 AluSc SINE SINE
9011 chr1.75449965.75450721 L1PA16 LINE LINE
9012 chr1.75470334.75470910 L2c LINE LINE
9013 chr1.75502845.75503898 MIRc SINE SINE
9014 chr1.75502845.75503898 MSTA LTR LTR
9015 chr1.75514182.75514537 <NA> <NA> <NA>
9016 chr1.75533095.75533621 MER65A LTR LTR
9017 chr1.75614526.75617049 (AC)n Other Simple_repeat
9018 chr1.75614526.75617049 (GA)n Other Simple_repeat
9019 chr1.75614526.75617049 (CGGCT)n Other Simple_repeat
9020 chr1.75614526.75617049 (TGC)n Other Simple_repeat
9021 chr1.75614526.75617049 (CCACCCC)n Other Simple_repeat
9022 chr1.75632075.75632617 MIR3 SINE SINE
9023 chr1.75672269.75673237 L1M1 LINE LINE
9024 chr1.75724020.75725044 (CCGCC)n Other Simple_repeat
9025 chr1.75767875.75768299 LTR37-int LTR LTR
9026 chr1.75767875.75768299 AluJb SINE SINE
9027 chr1.75775655.75775993 AluY SINE SINE
9028 chr1.75775655.75775993 L1MEd LINE LINE
9029 chr1.75785726.75786792 LTR8 LTR LTR
9030 chr1.75785726.75786792 AluJo SINE SINE
9031 chr1.75811580.75811957 <NA> <NA> <NA>
9032 chr1.75842622.75842973 LTR13 LTR LTR
9033 chr1.75854987.75855356 AluJr4 SINE SINE
9034 chr1.75854987.75855356 MLT1C LTR LTR
9035 chr1.75901235.75901810 L1MA4 LINE LINE
9036 chr1.75908641.75909296 L1M3f LINE LINE
9037 chr1.75910529.75911142 FLAM_C SINE SINE
9038 chr1.75910529.75911142 L2c LINE LINE
9039 chr1.75964309.75964928 MIR SINE SINE
9040 chr1.75964309.75964928 MLT1C LTR LTR
9041 chr1.75964309.75964928 AluSz SINE SINE
9042 chr1.75964309.75964928 MLT1C LTR LTR
9043 chr1.75991307.75991887 MIRb SINE SINE
9044 chr1.75996037.75996510 (TG)n Other Simple_repeat
9045 chr1.75996037.75996510 MIR SINE SINE
9046 chr1.76013019.76013463 <NA> <NA> <NA>
9047 chr1.76021921.76022106 MIRb SINE SINE
9048 chr1.76023665.76024980 Charlie15a DNA DNA
9049 chr1.76023665.76024980 AluSz6 SINE SINE
9050 chr1.76035198.76035525 <NA> <NA> <NA>
9051 chr1.76038390.76038768 MIRc SINE SINE
9052 chr1.76040133.76040683 MER61E LTR LTR
9053 chr1.76042658.76043150 AluSz SINE SINE
9054 chr1.76053008.76053407 <NA> <NA> <NA>
9055 chr1.76066405.76066876 LTR40b LTR LTR
9056 chr1.76068507.76068941 L2c LINE LINE
9057 chr1.76068507.76068941 MER58B DNA DNA
9058 chr1.76074300.76075422 G-rich Other Low_complexity
9059 chr1.76086709.76087082 <NA> <NA> <NA>
9060 chr1.76090282.76090834 L2 LINE LINE
9061 chr1.76121606.76122318 AluY SINE SINE
9062 chr1.76121606.76122318 L2a LINE LINE
9063 chr1.76142743.76143480 (GT)n Other Simple_repeat
9064 chr1.76154058.76154763 <NA> <NA> <NA>
9065 chr1.76155983.76156370 L1MC3 LINE LINE
9066 chr1.76215738.76216064 L3 LINE LINE
9067 chr1.76215738.76216064 L2a LINE LINE
9068 chr1.76238177.76238581 L2c LINE LINE
9069 chr1.76240158.76240742 MIRb SINE SINE
9070 chr1.76240158.76240742 MLT1J1 LTR LTR
9071 chr1.76247105.76247812 L1PA8 LINE LINE
9072 chr1.76254149.76255006 LTR54B LTR LTR
9073 chr1.76268415.76268844 <NA> <NA> <NA>
9074 chr1.76269177.76269602 L4_A_Mam LINE LINE
9075 chr1.76269177.76269602 MER102a DNA DNA
9076 chr1.76274379.76274969 <NA> <NA> <NA>
9077 chr1.76279095.76279771 <NA> <NA> <NA>
9078 chr1.76281396.76281635 <NA> <NA> <NA>
9079 chr1.76285691.76286244 ORSL DNA DNA
9080 chr1.76285691.76286244 (AC)n Other Simple_repeat
9081 chr1.76300149.76300563 MIR SINE SINE
9082 chr1.76303458.76303689 MER51A LTR LTR
9083 chr1.76314578.76315314 <NA> <NA> <NA>
9084 chr1.76330987.76331301 LTR67B LTR LTR
9085 chr1.76336963.76337477 <NA> <NA> <NA>
9086 chr1.76343463.76343789 <NA> <NA> <NA>
9087 chr1.76463244.76463854 L2a LINE LINE
9088 chr1.76463244.76463854 LTR33 LTR LTR
9089 chr1.76501739.76502166 MLT1L LTR LTR
9090 chr1.76586027.76586392 <NA> <NA> <NA>
9091 chr1.76607551.76608041 MER21C LTR LTR
9092 chr1.76607551.76608041 MER91A DNA DNA
9093 chr1.76626096.76626679 (AGC)n Other Simple_repeat
9094 chr1.76626096.76626679 Plat_L3 LINE LINE
9095 chr1.76626096.76626679 L2a LINE LINE
9096 chr1.76727508.76727847 <NA> <NA> <NA>
9097 chr1.76764619.76765357 <NA> <NA> <NA>
9098 chr1.76771783.76772213 <NA> <NA> <NA>
9099 chr1.76830409.76830728 <NA> <NA> <NA>
9100 chr1.76862567.76862750 L2a LINE LINE
9101 chr1.76867462.76869288 (GCA)n Other Simple_repeat
9102 chr1.76901245.76901591 <NA> <NA> <NA>
9103 chr1.76933312.76934099 L2a LINE LINE
9104 chr1.76933312.76934099 L4_B_Mam LINE LINE
9105 chr1.76933312.76934099 (A)n Other Simple_repeat
9106 chr1.76938919.76939707 MamRTE1 LINE LINE
9107 chr1.76949501.76949774 MIR3 SINE SINE
9108 chr1.76949501.76949774 MamGypsy2-I LTR LTR
9109 chr1.77039778.77040093 <NA> <NA> <NA>
9110 chr1.77063246.77063549 MARNA DNA DNA
9111 chr1.77081527.77082179 AluSc SINE SINE
9112 chr1.77081527.77082179 MER112 DNA DNA
9113 chr1.77081527.77082179 MER112 DNA DNA
9114 chr1.77089845.77090074 <NA> <NA> <NA>
9115 chr1.77120949.77121308 <NA> <NA> <NA>
9116 chr1.77126351.77126609 L1MC4 LINE LINE
9117 chr1.77218742.77219919 (TTAT)n Other Simple_repeat
9118 chr1.77271765.77272403 L2b LINE LINE
9119 chr1.77281576.77283318 (GTGTGT)n Other Simple_repeat
9120 chr1.77281576.77283318 (GCGCG)n Other Simple_repeat
9121 chr1.77313500.77313903 MER102c DNA DNA
9122 chr1.77322119.77322651 Charlie23a DNA DNA
9123 chr1.77322119.77322651 MIRc SINE SINE
9124 chr1.77347702.77348003 <NA> <NA> <NA>
9125 chr1.77370810.77371712 <NA> <NA> <NA>
9126 chr1.77375607.77375894 MIRc SINE SINE
9127 chr1.77378366.77379346 AluSp SINE SINE
9128 chr1.77378366.77379346 L1MEc LINE LINE
9129 chr1.77412502.77413147 <NA> <NA> <NA>
9130 chr1.77413159.77414281 L2b LINE LINE
9131 chr1.77413159.77414281 MIR SINE SINE
9132 chr1.77413159.77414281 (TCT)n Other Simple_repeat
9133 chr1.77413159.77414281 A-rich Other Low_complexity
9134 chr1.77423127.77423886 AluY SINE SINE
9135 chr1.77423127.77423886 L1MCa LINE LINE
9136 chr1.77424018.77424676 L1MCa LINE LINE
9137 chr1.77424018.77424676 AluJo SINE SINE
9138 chr1.77424018.77424676 L1MCa LINE LINE
9139 chr1.77511364.77511847 <NA> <NA> <NA>
9140 chr1.77515423.77515825 AluJr SINE SINE
9141 chr1.77533491.77534004 AluSz SINE SINE
9142 chr1.77533491.77534004 MER5A1 DNA DNA
9143 chr1.77536837.77537171 <NA> <NA> <NA>
9144 chr1.77539287.77540088 <NA> <NA> <NA>
9145 chr1.77544052.77545586 Tigger3b DNA DNA
9146 chr1.77544052.77545586 (AC)n Other Simple_repeat
9147 chr1.77544052.77545586 L1ME4b LINE LINE
9148 chr1.77544052.77545586 (TCTT)n Other Simple_repeat
9149 chr1.77544052.77545586 L1MC LINE LINE
9150 chr1.77545722.77546305 <NA> <NA> <NA>
9151 chr1.77562686.77563067 MIR SINE SINE
9152 chr1.77565362.77565957 <NA> <NA> <NA>
9153 chr1.77605185.77605806 L1MA9 LINE LINE
9154 chr1.77638970.77639371 (GGTA)n Other Simple_repeat
9155 chr1.77638970.77639371 (CAGA)n Other Simple_repeat
9156 chr1.77651573.77651995 L1MB3 LINE LINE
9157 chr1.77651573.77651995 AluSx3 SINE SINE
9158 chr1.77665060.77665448 <NA> <NA> <NA>
9159 chr1.77669027.77669342 (TTCTC)n Other Simple_repeat
9160 chr1.77682139.77683980 (CGC)n Other Simple_repeat
9161 chr1.77682139.77683980 (GGC)n Other Simple_repeat
9162 chr1.77682139.77683980 L2a LINE LINE
9163 chr1.77739802.77740238 MER105 DNA DNA
9164 chr1.77742260.77742439 MIRb SINE SINE
9165 chr1.77742260.77742439 MER20 DNA DNA
9166 chr1.77758933.77760132 <NA> <NA> <NA>
9167 chr1.77779510.77780297 5S Other rRNA
9168 chr1.77798158.77798418 MLT1C LTR LTR
9169 chr1.77798158.77798418 THE1B LTR LTR
9170 chr1.77824200.77824463 AluJr4 SINE SINE
9171 chr1.77825236.77825687 AluSz SINE SINE
9172 chr1.77832072.77833515 L2c LINE LINE
9173 chr1.77834761.77835310 <NA> <NA> <NA>
9174 chr1.77888057.77889988 (CGG)n Other Simple_repeat
9175 chr1.77899737.77900336 L2a LINE LINE
9176 chr1.77899737.77900336 L2c LINE LINE
9177 chr1.77948875.77949506 <NA> <NA> <NA>
9178 chr1.77978066.77979693 (CCA)n Other Simple_repeat
9179 chr1.77998520.77998987 AluJb SINE SINE
9180 chr1.78004074.78005423 (TC)n Other Simple_repeat
9181 chr1.78045994.78046691 <NA> <NA> <NA>
9182 chr1.78049388.78049856 AluSx SINE SINE
9183 chr1.78049388.78049856 MIRc SINE SINE
9184 chr1.78068796.78069306 <NA> <NA> <NA>
9185 chr1.78070678.78071130 <NA> <NA> <NA>
9186 chr1.78082150.78082951 MIR SINE SINE
9187 chr1.78082150.78082951 L1MC4 LINE LINE
9188 chr1.78101301.78102355 MER112 DNA DNA
9189 chr1.78113916.78114855 Tigger13a DNA DNA
9190 chr1.78113916.78114855 L1MC1 LINE LINE
9191 chr1.78145162.78145516 <NA> <NA> <NA>
9192 chr1.78171850.78172187 LTR33C LTR LTR
9193 chr1.78176408.78176727 L1M5 LINE LINE
9194 chr1.78176408.78176727 LTR79 LTR LTR
9195 chr1.78339447.78340740 A-rich Other Low_complexity
9196 chr1.78339447.78340740 A-rich Other Low_complexity
9197 chr1.78339447.78340740 L2b LINE LINE
9198 chr1.78339447.78340740 AluSx3 SINE SINE
9199 chr1.78370465.78370669 L2c LINE LINE
9200 chr1.78437162.78437962 L2c LINE LINE
9201 chr1.78437162.78437962 MamRep434 DNA DNA
9202 chr1.78437162.78437962 (TA)n Other Simple_repeat
9203 chr1.78490732.78492063 <NA> <NA> <NA>
9204 chr1.78606025.78606737 AluJb SINE SINE
9205 chr1.78606025.78606737 L2c LINE LINE
9206 chr1.78617451.78618039 L1PA17 LINE LINE
9207 chr1.78617451.78618039 LTR41 LTR LTR
9208 chr1.78658893.78659438 L1MC5 LINE LINE
9209 chr1.78658893.78659438 L2a LINE LINE
9210 chr1.78831751.78832026 MLT1L LTR LTR
9211 chr1.78833309.78833815 L2 LINE LINE
9212 chr1.78833309.78833815 L2 LINE LINE
9213 chr1.78840553.78841488 <NA> <NA> <NA>
9214 chr1.78876105.78876385 HERVH-int LTR LTR
9215 chr1.78884653.78885384 MIR SINE SINE
9216 chr1.79006076.79007037 <NA> <NA> <NA>
9217 chr1.79043602.79043866 <NA> <NA> <NA>
9218 chr1.79045075.79045502 LTR1A2 LTR LTR
9219 chr1.79079817.79080335 MamSINE1 SINE SINE
9220 chr1.79089044.79089203 (TACATA)n Other Simple_repeat
9221 chr1.79089044.79089203 AluJb SINE SINE
9222 chr1.79105390.79105854 MLT1H-int LTR LTR
9223 chr1.79105390.79105854 MLT1H LTR LTR
9224 chr1.79160980.79161618 <NA> <NA> <NA>
9225 chr1.79193157.79193728 <NA> <NA> <NA>
9226 chr1.79323128.79323758 L2c LINE LINE
9227 chr1.79353016.79353632 (CTTTCC)n Other Simple_repeat
9228 chr1.79353016.79353632 MLT1A-int LTR LTR
9229 chr1.79353016.79353632 MLT1A-int LTR LTR
9230 chr1.79353016.79353632 MLT1A LTR LTR
9231 chr1.79454512.79454712 <NA> <NA> <NA>
9232 chr1.79603841.79604431 MER65D LTR LTR
9233 chr1.79603841.79604431 LTR21A LTR LTR
9234 chr1.79646972.79647411 <NA> <NA> <NA>
9235 chr1.79652363.79652874 <NA> <NA> <NA>
9236 chr1.79702451.79702954 LTR5_Hs LTR LTR
9237 chr1.79711188.79711486 MLT1C-int LTR LTR
9238 chr1.79711188.79711486 MLT1C-int LTR LTR
9239 chr1.79791367.79791726 <NA> <NA> <NA>
9240 chr1.79792229.79792631 LTR45C LTR LTR
9241 chr1.79811090.79811609 <NA> <NA> <NA>
9242 chr1.79859289.79860128 LTR1B LTR LTR
9243 chr1.79859289.79860128 MER50B LTR LTR
9244 chr1.79859289.79860128 L1MC5 LINE LINE
9245 chr1.79859289.79860128 L1ME3B LINE LINE
9246 chr1.79899845.79900346 <NA> <NA> <NA>
9247 chr1.79977690.79978248 L2a LINE LINE
9248 chr1.79981860.79982600 <NA> <NA> <NA>
9249 chr1.80053923.80054476 LTR12C LTR LTR
9250 chr1.80053923.80054476 HERVL18-int LTR LTR
9251 chr1.80053923.80054476 HERVL18-int LTR LTR
9252 chr1.80053923.80054476 LTR18A LTR LTR
9253 chr1.80064370.80064779 MIR SINE SINE
9254 chr1.80171225.80171582 <NA> <NA> <NA>
9255 chr1.80218049.80218369 <NA> <NA> <NA>
9256 chr1.80225286.80225666 L2b LINE LINE
9257 chr1.80258505.80259060 L1MCc LINE LINE
9258 chr1.80258505.80259060 (AC)n Other Simple_repeat
9259 chr1.80367046.80367377 L2a LINE LINE
9260 chr1.80374877.80375160 <NA> <NA> <NA>
9261 chr1.80375512.80376094 L2c LINE LINE
9262 chr1.80375512.80376094 (CA)n Other Simple_repeat
9263 chr1.80375512.80376094 MIR SINE SINE
9264 chr1.80444938.80445368 <NA> <NA> <NA>
9265 chr1.80447357.80447839 L2a LINE LINE
9266 chr1.80473723.80474118 L1MEc LINE LINE
9267 chr1.80498517.80499057 <NA> <NA> <NA>
9268 chr1.80509980.80510471 MLT1G1 LTR LTR
9269 chr1.80542183.80542633 MIRc SINE SINE
9270 chr1.80656144.80656443 <NA> <NA> <NA>
9271 chr1.80759353.80759940 MamGypLTR1a LTR LTR
9272 chr1.80759353.80759940 MIRc SINE SINE
9273 chr1.80759353.80759940 MER31B LTR LTR
9274 chr1.80769203.80769559 <NA> <NA> <NA>
9275 chr1.80881389.80881941 MER45B DNA DNA
9276 chr1.80881389.80881941 L2a LINE LINE
9277 chr1.80882637.80883044 LTR90A LTR LTR
9278 chr1.80994946.80995558 LTR78 LTR LTR
9279 chr1.80994946.80995558 LTR78B LTR LTR
9280 chr1.80997247.80997415 Arthur1B DNA DNA
9281 chr1.81029037.81029721 L2a LINE LINE
9282 chr1.81029037.81029721 MER20 DNA DNA
9283 chr1.81029037.81029721 L2a LINE LINE
9284 chr1.81029037.81029721 AluSc SINE SINE
9285 chr1.81113051.81113555 L2a LINE LINE
9286 chr1.81129291.81129812 L2c LINE LINE
9287 chr1.81150924.81151773 OldhAT1 DNA DNA
9288 chr1.81158664.81158996 <NA> <NA> <NA>
9289 chr1.81179299.81179577 Tigger1a_Art DNA DNA
9290 chr1.81224225.81224758 L1MC5a LINE LINE
9291 chr1.81224225.81224758 L2b LINE LINE
9292 chr1.81259149.81259899 L2a LINE LINE
9293 chr1.81303912.81304555 MamTip2 DNA DNA
9294 chr1.81303912.81304555 MIR SINE SINE
9295 chr1.81305842.81306446 (CT)n Other Simple_repeat
9296 chr1.81314393.81314741 <NA> <NA> <NA>
9297 chr1.81317123.81317583 MER20 DNA DNA
9298 chr1.81317123.81317583 L2b LINE LINE
9299 chr1.81345144.81345390 MLT1F1 LTR LTR
9300 chr1.81409174.81409599 <NA> <NA> <NA>
9301 chr1.81410463.81410665 UCON105 Other Unknown
9302 chr1.81414455.81414748 AmnSINE1 SINE SINE
9303 chr1.81414455.81414748 AmnSINE1 SINE SINE
9304 chr1.81440877.81441054 L2 LINE LINE
9305 chr1.81478186.81478589 <NA> <NA> <NA>
9306 chr1.81493261.81493936 <NA> <NA> <NA>
9307 chr1.81518097.81518383 <NA> <NA> <NA>
9308 chr1.81539330.81539506 MLT1J-int LTR LTR
9309 chr1.81549650.81549813 <NA> <NA> <NA>
9310 chr1.81557232.81557950 (AGAA)n Other Simple_repeat
9311 chr1.81557232.81557950 L2b LINE LINE
9312 chr1.81635625.81636255 MLT1A0 LTR LTR
9313 chr1.81635625.81636255 L2a LINE LINE
9314 chr1.81635625.81636255 L2a LINE LINE
9315 chr1.81635625.81636255 (TATG)n Other Simple_repeat
9316 chr1.81670050.81670768 AluJb SINE SINE
9317 chr1.81680084.81680252 <NA> <NA> <NA>
9318 chr1.81681403.81681883 <NA> <NA> <NA>
9319 chr1.81682217.81683015 AluSx1 SINE SINE
9320 chr1.81695600.81696139 AluSz SINE SINE
9321 chr1.81699316.81699675 <NA> <NA> <NA>
9322 chr1.81702977.81703199 <NA> <NA> <NA>
9323 chr1.81706679.81707628 L2b LINE LINE
9324 chr1.81731729.81732258 L2b LINE LINE
9325 chr1.81739437.81740079 MER20B DNA DNA
9326 chr1.81739437.81740079 (ACACAT)n Other Simple_repeat
9327 chr1.81800022.81803825 (TCTC)n Other Simple_repeat
9328 chr1.81832596.81832876 <NA> <NA> <NA>
9329 chr1.81833739.81834503 (TTTTTG)n Other Simple_repeat
9330 chr1.81833739.81834503 (GTTTT)n Other Simple_repeat
9331 chr1.81874641.81875209 (TGTCT)n Other Simple_repeat
9332 chr1.81874641.81875209 AluSx SINE SINE
9333 chr1.81876828.81877694 MIR SINE SINE
9334 chr1.81887816.81888350 <NA> <NA> <NA>
9335 chr1.81920216.81920788 LTR16 LTR LTR
9336 chr1.81921482.81922286 <NA> <NA> <NA>
9337 chr1.81954338.81955035 <NA> <NA> <NA>
9338 chr1.81974249.81974761 <NA> <NA> <NA>
9339 chr1.81989356.81989799 <NA> <NA> <NA>
9340 chr1.81997930.81998463 MIRb SINE SINE
9341 chr1.82018425.82018603 <NA> <NA> <NA>
9342 chr1.82062422.82062742 <NA> <NA> <NA>
9343 chr1.82064546.82065084 L2b LINE LINE
9344 chr1.82064546.82065084 L2b LINE LINE
9345 chr1.82064546.82065084 L2b LINE LINE
9346 chr1.82064546.82065084 L2a LINE LINE
9347 chr1.82066067.82066334 LTR16 LTR LTR
9348 chr1.82086770.82087161 <NA> <NA> <NA>
9349 chr1.82177058.82177466 MIR3 SINE SINE
9350 chr1.82269331.82269792 UCON48 Other Unknown
9351 chr1.82284303.82284670 AluJr SINE SINE
9352 chr1.82317747.82317961 L1ME3A LINE LINE
9353 chr1.82317747.82317961 MSTD LTR LTR
9354 chr1.82318835.82319415 MLT1B LTR LTR
9355 chr1.82319579.82319966 <NA> <NA> <NA>
9356 chr1.82348505.82349014 AluSx3 SINE SINE
9357 chr1.82348505.82349014 (AAACA)n Other Simple_repeat
9358 chr1.82348505.82349014 MIR SINE SINE
9359 chr1.82377257.82377706 L1ME2 LINE LINE
9360 chr1.82377257.82377706 L1ME2 LINE LINE
9361 chr1.82388740.82388975 MER5A DNA DNA
9362 chr1.82405339.82405563 <NA> <NA> <NA>
9363 chr1.82418024.82418576 MIRb SINE SINE
9364 chr1.82418024.82418576 L2c LINE LINE
9365 chr1.82418024.82418576 L2b LINE LINE
9366 chr1.82485589.82486115 <NA> <NA> <NA>
9367 chr1.82517667.82517932 <NA> <NA> <NA>
9368 chr1.82565179.82565848 <NA> <NA> <NA>
9369 chr1.82614078.82614537 L2a LINE LINE
9370 chr1.82631995.82632778 <NA> <NA> <NA>
9371 chr1.82795592.82796082 MER39 LTR LTR
9372 chr1.82838115.82838452 <NA> <NA> <NA>
9373 chr1.82845352.82845798 <NA> <NA> <NA>
9374 chr1.82870775.82870991 <NA> <NA> <NA>
9375 chr1.82920136.82921271 <NA> <NA> <NA>
9376 chr1.82978611.82979482 <NA> <NA> <NA>
9377 chr1.82991462.82992100 MIRb SINE SINE
9378 chr1.83012858.83013250 MER45C DNA DNA
9379 chr1.83012858.83013250 L1MEd LINE LINE
9380 chr1.83017819.83018495 <NA> <NA> <NA>
9381 chr1.83033713.83034039 MLT1A LTR LTR
9382 chr1.83099535.83099805 MIRc SINE SINE
9383 chr1.83101237.83101712 (CA)n Other Simple_repeat
9384 chr1.83101237.83101712 L2c LINE LINE
9385 chr1.83102417.83103258 <NA> <NA> <NA>
9386 chr1.83151192.83151427 <NA> <NA> <NA>
9387 chr1.83181637.83182957 L1PA2 LINE LINE
9388 chr1.83272538.83272794 L2a LINE LINE
9389 chr1.83323706.83324084 MLT1J LTR LTR
9390 chr1.83508626.83509053 <NA> <NA> <NA>
9391 chr1.83559282.83559942 <NA> <NA> <NA>
9392 chr1.83562673.83563009 LTR16E2 LTR LTR
9393 chr1.83609649.83609950 MIR SINE SINE
9394 chr1.83636891.83637865 MER45A DNA DNA
9395 chr1.83636891.83637865 A-rich Other Low_complexity
9396 chr1.83636891.83637865 MIRc SINE SINE
9397 chr1.83636891.83637865 MIRc SINE SINE
9398 chr1.83692420.83693744 <NA> <NA> <NA>
9399 chr1.83791851.83792273 <NA> <NA> <NA>
9400 chr1.83822254.83822561 MER74A LTR LTR
9401 chr1.83828153.83829012 L2b LINE LINE
9402 chr1.83828153.83829012 L2b LINE LINE
9403 chr1.83833788.83834256 MamRep1151 Other LTR?
9404 chr1.83857135.83857380 <NA> <NA> <NA>
9405 chr1.83860473.83861167 <NA> <NA> <NA>
9406 chr1.83901632.83901960 L2a LINE LINE
9407 chr1.83901632.83901960 L2a LINE LINE
9408 chr1.83918846.83919253 L1MEg2 LINE LINE
9409 chr1.83918846.83919253 MLT1H1 LTR LTR
9410 chr1.83920325.83920702 L2 LINE LINE
9411 chr1.83920325.83920702 MER102c DNA DNA
9412 chr1.83931663.83931934 <NA> <NA> <NA>
9413 chr1.83998385.83999679 <NA> <NA> <NA>
9414 chr1.84077450.84079081 (CCG)n Other Simple_repeat
9415 chr1.84086287.84086499 <NA> <NA> <NA>
9416 chr1.84088973.84090144 L2 LINE LINE
9417 chr1.84096127.84096432 L1ME3 LINE LINE
9418 chr1.84103216.84103824 MLT1G LTR LTR
9419 chr1.84103216.84103824 MLT1G LTR LTR
9420 chr1.84117967.84118363 L1MA4A LINE LINE
9421 chr1.84124572.84125426 MLT1E2 LTR LTR
9422 chr1.84156200.84157128 AluJo SINE SINE
9423 chr1.84156200.84157128 MamGypLTR3a LTR LTR
9424 chr1.84156200.84157128 MER102b DNA DNA
9425 chr1.84156200.84157128 MamGypLTR3a LTR LTR
9426 chr1.84174081.84174649 L2c LINE LINE
9427 chr1.84224158.84225043 L1MA4A LINE LINE
9428 chr1.84253822.84254265 <NA> <NA> <NA>
9429 chr1.84267449.84267820 MLT1F LTR LTR
9430 chr1.84344326.84344704 <NA> <NA> <NA>
9431 chr1.84355440.84356044 MER33 DNA DNA
9432 chr1.84355440.84356044 MLT1J LTR LTR
9433 chr1.84365348.84366174 Tigger15a DNA DNA
9434 chr1.84365348.84366174 MIRc SINE SINE
9435 chr1.84371064.84371296 MER65B LTR LTR
9436 chr1.84371064.84371296 MER65B LTR LTR
9437 chr1.84412377.84413044 <NA> <NA> <NA>
9438 chr1.84427521.84428064 AluJo SINE SINE
9439 chr1.84433471.84434013 (TTGCT)n Other Simple_repeat
9440 chr1.84442316.84442522 (AT)n Other Simple_repeat
9441 chr1.84479207.84480288 MIRc SINE SINE
9442 chr1.84492408.84493001 MIRb SINE SINE
9443 chr1.84492408.84493001 MER20B DNA DNA
9444 chr1.84492408.84493001 MIRb SINE SINE
9445 chr1.84504867.84506896 (CCCG)n Other Simple_repeat
9446 chr1.84504867.84506896 GA-rich Other Low_complexity
9447 chr1.84573839.84574794 MIRb SINE SINE
9448 chr1.84582955.84583886 MIRb SINE SINE
9449 chr1.84582955.84583886 LTR9 LTR LTR
9450 chr1.84599126.84599772 AluJb SINE SINE
9451 chr1.84603211.84604402 LTR19C LTR LTR
9452 chr1.84603211.84604402 LTR25-int LTR LTR
9453 chr1.84604490.84604805 LTR25-int LTR LTR
9454 chr1.84604490.84604805 Tigger3 DNA DNA
9455 chr1.84604490.84604805 LTR25-int LTR LTR
9456 chr1.84611872.84612264 LTR19C LTR LTR
9457 chr1.84611872.84612264 AluSc SINE SINE
9458 chr1.84617461.84617661 <NA> <NA> <NA>
9459 chr1.84619322.84619970 AluSx1 SINE SINE
9460 chr1.84619322.84619970 Mam_R4 LINE LINE
9461 chr1.84619322.84619970 L1ME4a LINE LINE
9462 chr1.84619322.84619970 MER4D LTR LTR
9463 chr1.84620672.84621206 G-rich Other Low_complexity
9464 chr1.84632877.84633423 L2c LINE LINE
9465 chr1.84632877.84633423 L2c LINE LINE
9466 chr1.84634741.84635252 MER77 LTR LTR
9467 chr1.84634741.84635252 L2c LINE LINE
9468 chr1.84642496.84643555 AluJb SINE SINE
9469 chr1.84642496.84643555 (CA)n Other Simple_repeat
9470 chr1.84642496.84643555 MIRc SINE SINE
9471 chr1.84645833.84646144 MamRTE1 LINE LINE
9472 chr1.84689768.84691238 (CGCC)n Other Simple_repeat
9473 chr1.84689768.84691238 (CTGCGG)n Other Simple_repeat
9474 chr1.84689768.84691238 G-rich Other Low_complexity
9475 chr1.84698211.84699102 <NA> <NA> <NA>
9476 chr1.84721185.84721618 <NA> <NA> <NA>
9477 chr1.84753444.84753943 L2a LINE LINE
9478 chr1.84758743.84759567 (AC)n Other Simple_repeat
9479 chr1.84772081.84773144 MIR3 SINE SINE
9480 chr1.84782407.84782857 <NA> <NA> <NA>
9481 chr1.84796281.84796507 <NA> <NA> <NA>
9482 chr1.84797462.84798192 MLT1C LTR LTR
9483 chr1.84797462.84798192 (ATAG)n Other Simple_repeat
9484 chr1.84797462.84798192 (TA)n Other Simple_repeat
9485 chr1.84824938.84825789 L2b LINE LINE
9486 chr1.84824938.84825789 MIR3 SINE SINE
9487 chr1.84824938.84825789 L2b LINE LINE
9488 chr1.84843018.84843340 <NA> <NA> <NA>
9489 chr1.84847292.84847845 <NA> <NA> <NA>
9490 chr1.84851918.84852180 AluSc SINE SINE
9491 chr1.84854085.84854786 L2c LINE LINE
9492 chr1.84854085.84854786 A-rich Other Low_complexity
9493 chr1.84870103.84871086 MIR SINE SINE
9494 chr1.84870103.84871086 (TTA)n Other Simple_repeat
9495 chr1.84870103.84871086 MIR SINE SINE
9496 chr1.84877567.84877891 Tigger8 DNA DNA
9497 chr1.84877567.84877891 L2c LINE LINE
9498 chr1.84884822.84885778 MER20 DNA DNA
9499 chr1.84884822.84885778 L1ME3G LINE LINE
9500 chr1.84884822.84885778 (CTTTC)n Other Simple_repeat
9501 chr1.84892462.84893600 (GCCCC)n Other Simple_repeat
9502 chr1.84907397.84907909 MER5A1 DNA DNA
9503 chr1.84907397.84907909 (GAGCT)n Other Simple_repeat
9504 chr1.84907397.84907909 LTR78 LTR LTR
9505 chr1.84929015.84929277 <NA> <NA> <NA>
9506 chr1.84936115.84936487 <NA> <NA> <NA>
9507 chr1.84940619.84940928 <NA> <NA> <NA>
9508 chr1.84944616.84945390 <NA> <NA> <NA>
9509 chr1.84945948.84946280 AluSz6 SINE SINE
9510 chr1.84960355.84960913 <NA> <NA> <NA>
9511 chr1.84961266.84961645 <NA> <NA> <NA>
9512 chr1.84996706.84998590 (CGCCC)n Other Simple_repeat
9513 chr1.84996706.84998590 FRAM SINE SINE
9514 chr1.84996706.84998590 L2b LINE LINE
9515 chr1.85047474.85049017 <NA> <NA> <NA>
9516 chr1.85061917.85063180 L2a LINE LINE
9517 chr1.85061917.85063180 L2a LINE LINE
9518 chr1.85061917.85063180 (AATG)n Other Simple_repeat
9519 chr1.85061917.85063180 L2c LINE LINE
9520 chr1.85088197.85088648 MIR SINE SINE
9521 chr1.85109461.85109754 Charlie16a DNA DNA
9522 chr1.85118561.85119303 L2b LINE LINE
9523 chr1.85118561.85119303 L1MB3 LINE LINE
9524 chr1.85118561.85119303 L1MB3 LINE LINE
9525 chr1.85133685.85134089 L1M5 LINE LINE
9526 chr1.85146666.85147345 L1PA7 LINE LINE
9527 chr1.85146666.85147345 L1MD LINE LINE
9528 chr1.85149704.85150279 MSTB1 LTR LTR
9529 chr1.85149704.85150279 MER113A DNA DNA
9530 chr1.85153099.85153725 L2a LINE LINE
9531 chr1.85153099.85153725 L2a LINE LINE
9532 chr1.85172620.85173026 L1MEc LINE LINE
9533 chr1.85195720.85195984 MIR SINE SINE
9534 chr1.85200242.85202118 (TCG)n Other Simple_repeat
9535 chr1.85200242.85202118 (GCG)n Other Simple_repeat
9536 chr1.85200242.85202118 G-rich Other Low_complexity
9537 chr1.85212405.85212786 AluJr SINE SINE
9538 chr1.85224806.85225529 <NA> <NA> <NA>
9539 chr1.85225734.85226367 <NA> <NA> <NA>
9540 chr1.85239993.85240586 <NA> <NA> <NA>
9541 chr1.85244574.85245048 L3b LINE LINE
9542 chr1.85258583.85260012 <NA> <NA> <NA>
9543 chr1.85275906.85277173 (CGACG)n Other Simple_repeat
9544 chr1.85275906.85277173 (AGGCGC)n Other Simple_repeat
9545 chr1.85275906.85277173 (CACA)n Other Simple_repeat
9546 chr1.85275906.85277173 L1ME4c LINE LINE
9547 chr1.85278887.85279209 L2a LINE LINE
9548 chr1.85289464.85290462 MIR SINE SINE
9549 chr1.85295012.85295352 <NA> <NA> <NA>
9550 chr1.85297951.85298501 <NA> <NA> <NA>
9551 chr1.85308009.85308815 MIRc SINE SINE
9552 chr1.85313860.85314676 L3 LINE LINE
9553 chr1.85313860.85314676 LTR33 LTR LTR
9554 chr1.85313860.85314676 LTR33 LTR LTR
9555 chr1.85315620.85316055 <NA> <NA> <NA>
9556 chr1.85320355.85320892 <NA> <NA> <NA>
9557 chr1.85328879.85329439 <NA> <NA> <NA>
9558 chr1.85330835.85331147 <NA> <NA> <NA>
9559 chr1.85338997.85339653 AluSz SINE SINE
9560 chr1.85343619.85344665 A-rich Other Low_complexity
9561 chr1.85343619.85344665 (CCTC)n Other Simple_repeat
9562 chr1.85374159.85374452 LTR78 LTR LTR
9563 chr1.85407037.85407572 <NA> <NA> <NA>
9564 chr1.85417208.85417505 <NA> <NA> <NA>
9565 chr1.85451282.85451861 MIRb SINE SINE
9566 chr1.85464096.85465539 (AC)n Other Simple_repeat
9567 chr1.85471229.85472052 LTR33 LTR LTR
9568 chr1.85471229.85472052 MIRb SINE SINE
9569 chr1.85471229.85472052 MER39B LTR LTR
9570 chr1.85484355.85484969 <NA> <NA> <NA>
9571 chr1.85494413.85495067 <NA> <NA> <NA>
9572 chr1.85495333.85495878 <NA> <NA> <NA>
9573 chr1.85496967.85497188 MamRTE1 LINE LINE
9574 chr1.85502511.85503026 (CACCAC)n Other Simple_repeat
9575 chr1.85502511.85503026 (CCACTG)n Other Simple_repeat
9576 chr1.85504435.85505038 MamGypsy2-LTR LTR LTR
9577 chr1.85504435.85505038 MIRb SINE SINE
9578 chr1.85504435.85505038 MER5A DNA DNA
9579 chr1.85504435.85505038 AluSq2 SINE SINE
9580 chr1.85521379.85521775 Chap1_Mam DNA DNA
9581 chr1.85521379.85521775 L2c LINE LINE
9582 chr1.85525594.85526286 <NA> <NA> <NA>
9583 chr1.85527051.85527551 <NA> <NA> <NA>
9584 chr1.85544371.85545521 <NA> <NA> <NA>
9585 chr1.85547497.85547987 L3b LINE LINE
9586 chr1.85547497.85547987 Charlie23a DNA DNA
9587 chr1.85550833.85551338 <NA> <NA> <NA>
9588 chr1.85553599.85554041 <NA> <NA> <NA>
9589 chr1.85555980.85556695 (CCT)n Other Simple_repeat
9590 chr1.85555980.85556695 MamSINE1 SINE SINE
9591 chr1.85555980.85556695 (GT)n Other Simple_repeat
9592 chr1.85568813.85570000 L2c LINE LINE
9593 chr1.85570300.85570995 (CA)n Other Simple_repeat
9594 chr1.85570300.85570995 MIRb SINE SINE
9595 chr1.85576357.85578247 MIRc SINE SINE
9596 chr1.85576357.85578247 (CCCACA)n Other Simple_repeat
9597 chr1.85576357.85578247 (CA)n Other Simple_repeat
9598 chr1.85576357.85578247 (ACCGCC)n Other Simple_repeat
9599 chr1.85576357.85578247 G-rich Other Low_complexity
9600 chr1.85576357.85578247 MER5A DNA DNA
9601 chr1.85580138.85580361 <NA> <NA> <NA>
9602 chr1.85580518.85582685 (AC)n Other Simple_repeat
9603 chr1.85584132.85584793 <NA> <NA> <NA>
9604 chr1.85599093.85599415 <NA> <NA> <NA>
9605 chr1.85607050.85607759 <NA> <NA> <NA>
9606 chr1.85611860.85612239 <NA> <NA> <NA>
9607 chr1.85612658.85613392 MIR3 SINE SINE
9608 chr1.85628771.85629676 <NA> <NA> <NA>
9609 chr1.85654200.85654983 L2c LINE LINE
9610 chr1.85654200.85654983 MIRc SINE SINE
9611 chr1.85654200.85654983 MIRb SINE SINE
9612 chr1.85691433.85691895 AluSz6 SINE SINE
9613 chr1.85691433.85691895 AluSx SINE SINE
9614 chr1.85692240.85692761 <NA> <NA> <NA>
9615 chr1.85707880.85708854 MIRb SINE SINE
9616 chr1.85850202.85850647 L2a LINE LINE
9617 chr1.85850202.85850647 MIR SINE SINE
9618 chr1.86068429.86068694 L1MA2 LINE LINE
9619 chr1.86069029.86069412 L1MA2 LINE LINE
9620 chr1.86154712.86157474 G-rich Other Low_complexity
9621 chr1.86207311.86207745 L3b LINE LINE
9622 chr1.86224470.86224895 MIRc SINE SINE
9623 chr1.86224470.86224895 L2c LINE LINE
9624 chr1.86226979.86227563 MLT1C LTR LTR
9625 chr1.86239244.86239884 MLT2B1 LTR LTR
9626 chr1.86239244.86239884 MIRb SINE SINE
9627 chr1.86239244.86239884 MIR SINE SINE
9628 chr1.86280525.86280808 ERVL-B4-int LTR LTR
9629 chr1.86388045.86388511 L2c LINE LINE
9630 chr1.86395281.86396716 MIRb SINE SINE
9631 chr1.86395281.86396716 MIR3 SINE SINE
9632 chr1.86409552.86409903 LTR18A LTR LTR
9633 chr1.86409552.86409903 HERVL18-int LTR LTR
9634 chr1.86419390.86419577 <NA> <NA> <NA>
9635 chr1.86446073.86446401 AluSc SINE SINE
9636 chr1.86461533.86461982 MER61E LTR LTR
9637 chr1.86461533.86461982 LTR49 LTR LTR
9638 chr1.86472180.86472482 L2 LINE LINE
9639 chr1.86487176.86488077 LTR81C LTR LTR
9640 chr1.86502617.86504479 HERVK11-int LTR LTR
9641 chr1.86502617.86504479 (CTG)n Other Simple_repeat
9642 chr1.86505242.86505669 <NA> <NA> <NA>
9643 chr1.86515734.86515887 <NA> <NA> <NA>
9644 chr1.86516366.86516721 MER115 DNA DNA
9645 chr1.86517381.86518003 MER45B DNA DNA
9646 chr1.86517381.86518003 MIRb SINE SINE
9647 chr1.86538833.86539242 LTR16A2 LTR LTR
9648 chr1.86562024.86562390 (AC)n Other Simple_repeat
9649 chr1.86562024.86562390 MER5A1 DNA DNA
9650 chr1.86640235.86640604 <NA> <NA> <NA>
9651 chr1.86648309.86648567 <NA> <NA> <NA>
9652 chr1.86704001.86705656 L2b LINE LINE
9653 chr1.86712304.86712714 MIRb SINE SINE
9654 chr1.86714119.86714842 Tigger16a DNA DNA
9655 chr1.86718735.86719078 <NA> <NA> <NA>
9656 chr1.86748770.86749337 MIRb SINE SINE
9657 chr1.86764988.86765596 L1PA16 LINE LINE
9658 chr1.86773696.86775806 MIRb SINE SINE
9659 chr1.86773696.86775806 L2c LINE LINE
9660 chr1.86779439.86779879 L2b LINE LINE
9661 chr1.86779439.86779879 MIRc SINE SINE
9662 chr1.86780850.86781317 L1MB2 LINE LINE
9663 chr1.86780850.86781317 L1MB2 LINE LINE
9664 chr1.86780850.86781317 AluSq2 SINE SINE
9665 chr1.86788396.86789234 L1MB2 LINE LINE
9666 chr1.86788396.86789234 L1MC5a LINE LINE
9667 chr1.86788396.86789234 L4_C_Mam LINE LINE
9668 chr1.86788396.86789234 L2c LINE LINE
9669 chr1.86792876.86793454 <NA> <NA> <NA>
9670 chr1.86821876.86822239 MIR SINE SINE
9671 chr1.86825142.86825906 LTR33 LTR LTR
9672 chr1.86825142.86825906 G-rich Other Low_complexity
9673 chr1.86827651.86827849 MER103C DNA DNA
9674 chr1.86827651.86827849 MER5C DNA DNA
9675 chr1.86829487.86829740 MLT1A0 LTR LTR
9676 chr1.86833455.86833943 L1MC4 LINE LINE
9677 chr1.86900520.86901200 AluY SINE SINE
9678 chr1.86900520.86901200 SVA_D Retroposon Retroposon
9679 chr1.86900520.86901200 (GGAGAC)n Other Simple_repeat
9680 chr1.86900520.86901200 AluJb SINE SINE
9681 chr1.86906471.86906788 MLT1G3 LTR LTR
9682 chr1.86913561.86915836 (CCCCGCT)n Other Simple_repeat
9683 chr1.86933759.86934256 L1MCb LINE LINE
9684 chr1.86946985.86947271 LTR40a LTR LTR
9685 chr1.86946985.86947271 LTR40a LTR LTR
9686 chr1.86948207.86948455 FRAM SINE SINE
9687 chr1.86953235.86953801 Tigger1 DNA DNA
9688 chr1.86953235.86953801 AluSx1 SINE SINE
9689 chr1.86953235.86953801 Tigger1 DNA DNA
9690 chr1.87025045.87025483 LTR50 LTR LTR
9691 chr1.87057789.87058327 AluY SINE SINE
9692 chr1.87057789.87058327 L3 LINE LINE
9693 chr1.87089532.87090322 MamSINE1 SINE SINE
9694 chr1.87089532.87090322 L2b LINE LINE
9695 chr1.87115468.87115776 MamTip2 DNA DNA
9696 chr1.87117891.87118242 <NA> <NA> <NA>
9697 chr1.87130459.87130838 <NA> <NA> <NA>
9698 chr1.87131676.87132438 <NA> <NA> <NA>
9699 chr1.87140883.87141161 <NA> <NA> <NA>
9700 chr1.87151352.87152395 MER53 DNA DNA
9701 chr1.87174718.87175213 MIRc SINE SINE
9702 chr1.87219460.87219608 <NA> <NA> <NA>
9703 chr1.87224272.87224530 MIR SINE SINE
9704 chr1.87224272.87224530 MIR SINE SINE
9705 chr1.87225995.87226821 L2a LINE LINE
9706 chr1.87284545.87285303 MamGypLTR3 LTR LTR
9707 chr1.87284545.87285303 MIRc SINE SINE
9708 chr1.87291035.87291590 MIRb SINE SINE
9709 chr1.87292854.87293178 <NA> <NA> <NA>
9710 chr1.87328170.87329555 (GAGC)n Other Simple_repeat
9711 chr1.87328170.87329555 G-rich Other Low_complexity
9712 chr1.87328170.87329555 (CGCCG)n Other Simple_repeat
9713 chr1.87331342.87332145 (CTCCCGT)n Other Simple_repeat
9714 chr1.87331342.87332145 G-rich Other Low_complexity
9715 chr1.87331342.87332145 GA-rich Other Low_complexity
9716 chr1.87335169.87335581 G-rich Other Low_complexity
9717 chr1.87355760.87356508 MER131 Other DNA?
9718 chr1.87369803.87370852 MIR SINE SINE
9719 chr1.87369803.87370852 (ATTC)n Other Simple_repeat
9720 chr1.87369803.87370852 MIRb SINE SINE
9721 chr1.87392091.87393304 <NA> <NA> <NA>
9722 chr1.87435526.87436887 <NA> <NA> <NA>
9723 chr1.87449362.87449756 <NA> <NA> <NA>
9724 chr1.87464021.87464267 L1MC4a LINE LINE
9725 chr1.87464021.87464267 L1MC4a LINE LINE
9726 chr1.87473160.87473747 MIRb SINE SINE
9727 chr1.87559021.87559200 <NA> <NA> <NA>
9728 chr1.87560759.87561552 <NA> <NA> <NA>
9729 chr1.87618219.87618603 <NA> <NA> <NA>
9730 chr1.87642534.87643233 <NA> <NA> <NA>
9731 chr1.87644575.87645309 <NA> <NA> <NA>
9732 chr1.87684142.87684545 <NA> <NA> <NA>
9733 chr1.87686028.87686565 <NA> <NA> <NA>
9734 chr1.87706064.87706585 L2a LINE LINE
9735 chr1.87706701.87707062 GA-rich Other Low_complexity
9736 chr1.87712198.87712874 L2c LINE LINE
9737 chr1.87712198.87712874 L2c LINE LINE
9738 chr1.87718146.87718604 MIR SINE SINE
9739 chr1.87730396.87731271 MamRTE1 LINE LINE
9740 chr1.87730396.87731271 L2c LINE LINE
9741 chr1.87730396.87731271 MIR SINE SINE
9742 chr1.87748064.87748442 (GAAAA)n Other Simple_repeat
9743 chr1.87766713.87767076 L2b LINE LINE
9744 chr1.87786860.87787186 <NA> <NA> <NA>
9745 chr1.87787551.87788011 L2c LINE LINE
9746 chr1.87794964.87795865 L2c LINE LINE
9747 chr1.87806004.87806654 <NA> <NA> <NA>
9748 chr1.87841857.87842727 (TTGTT)n Other Simple_repeat
9749 chr1.87841857.87842727 Tigger15a DNA DNA
9750 chr1.87841857.87842727 MIRb SINE SINE
9751 chr1.87883774.87884242 <NA> <NA> <NA>
9752 chr1.87902827.87903144 <NA> <NA> <NA>
9753 chr1.87905497.87906205 <NA> <NA> <NA>
9754 chr1.87916862.87917296 <NA> <NA> <NA>
9755 chr1.87937850.87938243 <NA> <NA> <NA>
9756 chr1.87951817.87952133 <NA> <NA> <NA>
9757 chr1.87953700.87954060 <NA> <NA> <NA>
9758 chr1.87954736.87955358 MER5A1 DNA DNA
9759 chr1.87954736.87955358 (TC)n Other Simple_repeat
9760 chr1.87954736.87955358 (T)n Other Simple_repeat
9761 chr1.87955908.87956348 UCON51 Other LTR?
9762 chr1.87968284.87968958 (T)n Other Simple_repeat
9763 chr1.87983749.87984256 MSTB LTR LTR
9764 chr1.88017025.88017274 <NA> <NA> <NA>
9765 chr1.88045292.88045653 LTR16E1 LTR LTR
9766 chr1.88061045.88062115 (CCCT)n Other Simple_repeat
9767 chr1.88061045.88062115 (CTTC)n Other Simple_repeat
9768 chr1.88175622.88176154 <NA> <NA> <NA>
9769 chr1.88180569.88180966 <NA> <NA> <NA>
9770 chr1.88228249.88228434 <NA> <NA> <NA>
9771 chr1.88236866.88237224 <NA> <NA> <NA>
9772 chr1.88311240.88312245 L2a LINE LINE
9773 chr1.88311240.88312245 MIR SINE SINE
9774 chr1.88318807.88319048 <NA> <NA> <NA>
9775 chr1.88324839.88325178 <NA> <NA> <NA>
9776 chr1.88327627.88328269 <NA> <NA> <NA>
9777 chr1.88457307.88458017 (AC)n Other Simple_repeat
9778 chr1.88462573.88463219 <NA> <NA> <NA>
9779 chr1.88472273.88472828 <NA> <NA> <NA>
9780 chr1.88490609.88490912 Tigger17a DNA DNA
9781 chr1.88513296.88513742 MLT1B LTR LTR
9782 chr1.88515379.88515710 MER5B DNA DNA
9783 chr1.88609177.88609468 <NA> <NA> <NA>
9784 chr1.88683571.88685321 A-rich Other Low_complexity
9785 chr1.88683571.88685321 (CTCTCCC)n Other Simple_repeat
9786 chr1.88683571.88685321 (T)n Other Simple_repeat
9787 chr1.88691573.88692036 L1ME3F LINE LINE
9788 chr1.88691573.88692036 MER44A DNA DNA
9789 chr1.88697494.88698545 L2c LINE LINE
9790 chr1.88697494.88698545 MER39B LTR LTR
9791 chr1.88697494.88698545 L4_B_Mam LINE LINE
9792 chr1.88731511.88731824 MIR3 SINE SINE
9793 chr1.88736513.88737832 AluSx SINE SINE
9794 chr1.88736513.88737832 L1M1 LINE LINE
9795 chr1.88736513.88737832 L1M1 LINE LINE
9796 chr1.88763166.88763953 AluSp SINE SINE
9797 chr1.88773559.88774546 AluSz6 SINE SINE
9798 chr1.88773559.88774546 FRAM SINE SINE
9799 chr1.88773559.88774546 MER21C LTR LTR
9800 chr1.88801734.88802314 LTR10E LTR LTR
9801 chr1.88880569.88881060 AluSz6 SINE SINE
9802 chr1.88891206.88892163 <NA> <NA> <NA>
9803 chr1.88910360.88910772 L2a LINE LINE
9804 chr1.88936899.88937143 <NA> <NA> <NA>
9805 chr1.88955437.88955809 MER5A DNA DNA
9806 chr1.88984932.88985612 LTR37A LTR LTR
9807 chr1.88984932.88985612 (GAGT)n Other Simple_repeat
9808 chr1.88984932.88985612 MIRb SINE SINE
9809 chr1.88992113.88993342 AluY SINE SINE
9810 chr1.88992113.88993342 (GCGCC)n Other Simple_repeat
9811 chr1.88998622.88999274 L2a LINE LINE
9812 chr1.88998622.88999274 AluJo SINE SINE
9813 chr1.88998622.88999274 (TAT)n Other Simple_repeat
9814 chr1.88998622.88999274 AluJo SINE SINE
9815 chr1.89001609.89001906 MamRep1527 LTR LTR
9816 chr1.89001609.89001906 HAL1M8 LINE LINE
9817 chr1.89001609.89001906 MER5A DNA DNA
9818 chr1.89021473.89022894 (CA)n Other Simple_repeat
9819 chr1.89021473.89022894 (CAA)n Other Simple_repeat
9820 chr1.89021473.89022894 GA-rich Other Low_complexity
9821 chr1.89021473.89022894 (GA)n Other Simple_repeat
9822 chr1.89021473.89022894 (A)n Other Simple_repeat
9823 chr1.89064051.89064450 GA-rich Other Low_complexity
9824 chr1.89064051.89064450 (TG)n Other Simple_repeat
9825 chr1.89064051.89064450 GA-rich Other Low_complexity
9826 chr1.89088605.89088867 HERVKC4-int LTR LTR
9827 chr1.89088605.89088867 HERVKC4-int LTR LTR
9828 chr1.89088605.89088867 L1P3 LINE LINE
9829 chr1.89125744.89126397 <NA> <NA> <NA>
9830 chr1.89149330.89149634 <NA> <NA> <NA>
9831 chr1.89200777.89201067 <NA> <NA> <NA>
9832 chr1.89203097.89203624 <NA> <NA> <NA>
9833 chr1.89260317.89261200 MER1B DNA DNA
9834 chr1.89262025.89262292 MIR SINE SINE
9835 chr1.89262710.89262970 <NA> <NA> <NA>
9836 chr1.89295173.89295551 <NA> <NA> <NA>
9837 chr1.89358221.89358860 (TCTCTC)n Other Simple_repeat
9838 chr1.89363021.89363694 LTR16E1 LTR LTR
9839 chr1.89363021.89363694 MER1B DNA DNA
9840 chr1.89363021.89363694 L1PB4 LINE LINE
9841 chr1.89363021.89363694 (CT)n Other Simple_repeat
9842 chr1.89363021.89363694 (TG)n Other Simple_repeat
9843 chr1.89363985.89364544 A-rich Other Low_complexity
9844 chr1.89366301.89366533 <NA> <NA> <NA>
9845 chr1.89451057.89451440 Tigger1 DNA DNA
9846 chr1.89453600.89454002 <NA> <NA> <NA>
9847 chr1.89454839.89455368 <NA> <NA> <NA>
9848 chr1.89465214.89465815 MIRc SINE SINE
9849 chr1.89465214.89465815 MIRb SINE SINE
9850 chr1.89465214.89465815 MIRc SINE SINE
9851 chr1.89472889.89473259 L1PA11 LINE LINE
9852 chr1.89483177.89483675 <NA> <NA> <NA>
9853 chr1.89503776.89504322 (TTTTC)n Other Simple_repeat
9854 chr1.89503776.89504322 MIRb SINE SINE
9855 chr1.89516089.89516332 L2b LINE LINE
9856 chr1.89518236.89518817 <NA> <NA> <NA>
9857 chr1.89524039.89525676 (CCT)n Other Simple_repeat
9858 chr1.89524039.89525676 (CCGCCT)n Other Simple_repeat
9859 chr1.89538370.89538662 <NA> <NA> <NA>
9860 chr1.89545386.89546357 MIRc SINE SINE
9861 chr1.89545386.89546357 L1MC5 LINE LINE
9862 chr1.89545386.89546357 L3 LINE LINE
9863 chr1.89547752.89548032 <NA> <NA> <NA>
9864 chr1.89548715.89549522 L2a LINE LINE
9865 chr1.89555618.89556040 MER21C LTR LTR
9866 chr1.89590630.89591240 MER20 DNA DNA
9867 chr1.89590630.89591240 L2b LINE LINE
9868 chr1.89598917.89599543 <NA> <NA> <NA>
9869 chr1.89603843.89604547 <NA> <NA> <NA>
9870 chr1.89605893.89606055 L2c LINE LINE
9871 chr1.89608023.89608776 MIRc SINE SINE
9872 chr1.89608023.89608776 MLT1A LTR LTR
9873 chr1.89610185.89610668 MER52D LTR LTR
9874 chr1.89616850.89617747 MIRb SINE SINE
9875 chr1.89616850.89617747 MER21C LTR LTR
9876 chr1.89632027.89634152 (CGCGGC)n Other Simple_repeat
9877 chr1.89640601.89640786 <NA> <NA> <NA>
9878 chr1.89659402.89660104 MIRb SINE SINE
9879 chr1.89659402.89660104 L2b LINE LINE
9880 chr1.89692543.89693159 <NA> <NA> <NA>
9881 chr1.89701852.89702151 L1MEi LINE LINE
9882 chr1.89710007.89710273 AluY SINE SINE
9883 chr1.89710007.89710273 MIRc SINE SINE
9884 chr1.89719648.89720275 AmnSINE1 SINE SINE
9885 chr1.89719648.89720275 (GTGAGT)n Other Simple_repeat
9886 chr1.89724771.89725228 <NA> <NA> <NA>
9887 chr1.89736779.89737575 MIRb SINE SINE
9888 chr1.89736779.89737575 L2a LINE LINE
9889 chr1.89736779.89737575 Tigger3b DNA DNA
9890 chr1.89739163.89739542 <NA> <NA> <NA>
9891 chr1.89762593.89763649 (AC)n Other Simple_repeat
9892 chr1.89794426.89794828 AluSc SINE SINE
9893 chr1.89802197.89802687 <NA> <NA> <NA>
9894 chr1.89802943.89803134 AluJr4 SINE SINE
9895 chr1.89804621.89805089 MIRb SINE SINE
9896 chr1.89808387.89808955 <NA> <NA> <NA>
9897 chr1.89820506.89822216 <NA> <NA> <NA>
9898 chr1.89823650.89824149 MER20 DNA DNA
9899 chr1.89842828.89844198 <NA> <NA> <NA>
9900 chr1.89865913.89866601 Charlie29a DNA DNA
9901 chr1.89865913.89866601 Charlie29a DNA DNA
9902 chr1.89877725.89878079 <NA> <NA> <NA>
9903 chr1.89878387.89878727 AluSq SINE SINE
9904 chr1.89885227.89885548 L2c LINE LINE
9905 chr1.89890216.89890433 AluY SINE SINE
9906 chr1.89890216.89890433 Tigger15a DNA DNA
9907 chr1.89894030.89895084 MLT1A0 LTR LTR
9908 chr1.89900852.89901334 MIR3 SINE SINE
9909 chr1.89906378.89907239 MER5A DNA DNA
9910 chr1.89906378.89907239 AluSx SINE SINE
9911 chr1.89910827.89911141 <NA> <NA> <NA>
9912 chr1.89911617.89912027 L2 LINE LINE
9913 chr1.89918785.89919102 L4_C_Mam LINE LINE
9914 chr1.89918785.89919102 L2c LINE LINE
9915 chr1.89928540.89928916 <NA> <NA> <NA>
9916 chr1.89938068.89938751 <NA> <NA> <NA>
9917 chr1.89945964.89946433 AluJb SINE SINE
9918 chr1.89952970.89953567 LTR8B LTR LTR
9919 chr1.89962055.89962583 LTR33 LTR LTR
9920 chr1.89962055.89962583 L3b LINE LINE
9921 chr1.89971595.89971915 L2a LINE LINE
9922 chr1.89975152.89975851 <NA> <NA> <NA>
9923 chr1.89978661.89979106 L1ME1 LINE LINE
9924 chr1.89987014.89987775 AluJr SINE SINE
9925 chr1.89987014.89987775 L2b LINE LINE
9926 chr1.89994715.89995768 <NA> <NA> <NA>
9927 chr1.90032551.90032923 <NA> <NA> <NA>
9928 chr1.90107119.90107447 (AAGATATT)n Other Simple_repeat
9929 chr1.90133138.90133584 MER91C DNA DNA
9930 chr1.90133138.90133584 MLT1I LTR LTR
9931 chr1.90190345.90191031 <NA> <NA> <NA>
9932 chr1.90192493.90192970 <NA> <NA> <NA>
9933 chr1.90203892.90204269 <NA> <NA> <NA>
9934 chr1.90219323.90219824 L1PA3 LINE LINE
9935 chr1.90274354.90274772 MIR SINE SINE
9936 chr1.90386853.90387441 <NA> <NA> <NA>
9937 chr1.90403090.90403734 L2a LINE LINE
9938 chr1.90403090.90403734 Zaphod DNA DNA
9939 chr1.90409019.90409224 <NA> <NA> <NA>
9940 chr1.90508464.90508959 <NA> <NA> <NA>
9941 chr1.90578998.90579474 L2b LINE LINE
9942 chr1.90605194.90605606 AmnSINE1 SINE SINE
9943 chr1.90605194.90605606 MIRc SINE SINE
9944 chr1.90616491.90616786 <NA> <NA> <NA>
9945 chr1.90706501.90707736 <NA> <NA> <NA>
9946 chr1.90712227.90712764 <NA> <NA> <NA>
9947 chr1.90718017.90719313 (CCAGCG)n Other Simple_repeat
9948 chr1.90718017.90719313 (CCGCGC)n Other Simple_repeat
9949 chr1.90718017.90719313 G-rich Other Low_complexity
9950 chr1.90725229.90726165 <NA> <NA> <NA>
9951 chr1.90768204.90768408 L1PA10 LINE LINE
9952 chr1.90784434.90784901 MIRb SINE SINE
9953 chr1.90835476.90836464 <NA> <NA> <NA>
9954 chr1.90850640.90852071 (GCCCC)n Other Simple_repeat
9955 chr1.90893030.90894069 AluJr SINE SINE
9956 chr1.90919568.90920216 L2a LINE LINE
9957 chr1.90925041.90925256 LTR23 LTR LTR
9958 chr1.90925898.90926666 MER72 LTR LTR
9959 chr1.90970657.90971179 AluSc SINE SINE
9960 chr1.90970657.90971179 L1MB3 LINE LINE
9961 chr1.90974083.90974702 MER39 LTR LTR
9962 chr1.90974083.90974702 AluSg4 SINE SINE
9963 chr1.90974083.90974702 L2a LINE LINE
9964 chr1.90994401.90994885 L1MEc LINE LINE
9965 chr1.90994401.90994885 L1M4a1 LINE LINE
9966 chr1.91021053.91022605 <NA> <NA> <NA>
9967 chr1.91070397.91070758 MER63B DNA DNA
9968 chr1.91098242.91099020 GA-rich Other Low_complexity
9969 chr1.91098242.91099020 MER5A DNA DNA
9970 chr1.91099788.91100446 MER41A LTR LTR
9971 chr1.91099788.91100446 MIRb SINE SINE
9972 chr1.91121012.91121307 L2b LINE LINE
9973 chr1.91165032.91165693 LTR78 LTR LTR
9974 chr1.91165032.91165693 LTR78 LTR LTR
9975 chr1.91166222.91166510 <NA> <NA> <NA>
9976 chr1.91273927.91274203 MamRep1894 DNA DNA
9977 chr1.91381905.91382222 L2a LINE LINE
9978 chr1.91404141.91405135 <NA> <NA> <NA>
9979 chr1.91500353.91501965 L2a LINE LINE
9980 chr1.91529655.91530591 MIRb SINE SINE
9981 chr1.91529655.91530591 L2c LINE LINE
9982 chr1.91556851.91557533 L2b LINE LINE
9983 chr1.91556851.91557533 MIR SINE SINE
9984 chr1.91569559.91570255 (GA)n Other Simple_repeat
9985 chr1.91569559.91570255 (GT)n Other Simple_repeat
9986 chr1.91569559.91570255 (GA)n Other Simple_repeat
9987 chr1.91569559.91570255 GA-rich Other Low_complexity
9988 chr1.91574870.91575414 (GT)n Other Simple_repeat
9989 chr1.91582590.91582820 MLT1L LTR LTR
9990 chr1.91584633.91585450 <NA> <NA> <NA>
9991 chr1.91594418.91595240 MIR SINE SINE
9992 chr1.91594418.91595240 MIR SINE SINE
9993 chr1.91596412.91596745 Tigger1 DNA DNA
9994 chr1.91600704.91601259 L2c LINE LINE
9995 chr1.91601581.91602437 (AC)n Other Simple_repeat
9996 chr1.91608919.91609367 <NA> <NA> <NA>
9997 chr1.91609551.91609908 <NA> <NA> <NA>
9998 chr1.91611430.91611914 <NA> <NA> <NA>
9999 chr1.91613675.91613866 <NA> <NA> <NA>
10000 chr1.91615275.91615918 AluSc5 SINE SINE
10001 chr1.91615275.91615918 AluJr SINE SINE
10002 chr1.91650676.91651270 <NA> <NA> <NA>
10003 chr1.91683610.91683800 (GCTGGGTTGG)n Other Simple_repeat
10004 chr1.91684686.91685200 <NA> <NA> <NA>
10005 chr1.91699487.91699898 L2c LINE LINE
10006 chr1.91699487.91699898 MIRc SINE SINE
10007 chr1.91706428.91706659 MER41B LTR LTR
10008 chr1.91707377.91708047 MamRTE1 LINE LINE
10009 chr1.91732584.91732851 <NA> <NA> <NA>
10010 chr1.91736804.91737497 MIRc SINE SINE
10011 chr1.91754366.91755072 <NA> <NA> <NA>
10012 chr1.91765276.91765612 L2b LINE LINE
10013 chr1.91778947.91779411 L2a LINE LINE
10014 chr1.91778947.91779411 MIR SINE SINE
10015 chr1.91781054.91781672 LTR87 LTR LTR
10016 chr1.91798677.91799678 L2b LINE LINE
10017 chr1.91798677.91799678 MIRb SINE SINE
10018 chr1.91799688.91800108 <NA> <NA> <NA>
10019 chr1.91818327.91818692 <NA> <NA> <NA>
10020 chr1.91819162.91819761 AluSg SINE SINE
10021 chr1.91826135.91826587 L2c LINE LINE
10022 chr1.91826135.91826587 MLT1L LTR LTR
10023 chr1.91827152.91827670 L2b LINE LINE
10024 chr1.91844948.91845483 <NA> <NA> <NA>
10025 chr1.91846036.91846467 <NA> <NA> <NA>
10026 chr1.91851277.91851685 <NA> <NA> <NA>
10027 chr1.91884863.91885226 MIR SINE SINE
10028 chr1.91885393.91886990 (CTGCCCCG)n Other Simple_repeat
10029 chr1.91885393.91886990 (CCCCCTC)n Other Simple_repeat
10030 chr1.91885393.91886990 (CTC)n Other Simple_repeat
10031 chr1.91900622.91901021 FLAM_A SINE SINE
10032 chr1.91927203.91927593 AluY SINE SINE
10033 chr1.91927203.91927593 (CA)n Other Simple_repeat
10034 chr1.91927203.91927593 AluJr SINE SINE
10035 chr1.91929350.91929717 L2c LINE LINE
10036 chr1.91929350.91929717 MIR3 SINE SINE
10037 chr1.91929350.91929717 AluSq2 SINE SINE
10038 chr1.91977602.91977853 AluSz6 SINE SINE
10039 chr1.92029425.92031079 (TG)n Other Simple_repeat
10040 chr1.92029425.92031079 (AG)n Other Simple_repeat
10041 chr1.92037448.92037744 <NA> <NA> <NA>
10042 chr1.92060148.92060408 AluJr SINE SINE
10043 chr1.92069245.92069571 Arthur1B DNA DNA
10044 chr1.92079936.92081035 <NA> <NA> <NA>
10045 chr1.92118640.92119432 L1MC3 LINE LINE
10046 chr1.92118640.92119432 (GT)n Other Simple_repeat
10047 chr1.92118640.92119432 L1MC3 LINE LINE
10048 chr1.92118640.92119432 Tigger3b DNA DNA
10049 chr1.92118640.92119432 AluJo SINE SINE
10050 chr1.92125202.92125618 <NA> <NA> <NA>
10051 chr1.92209412.92209659 <NA> <NA> <NA>
10052 chr1.92291491.92291686 <NA> <NA> <NA>
10053 chr1.92298542.92299533 <NA> <NA> <NA>
10054 chr1.92372239.92372646 AluJr SINE SINE
10055 chr1.92408796.92409227 L2b LINE LINE
10056 chr1.92411639.92411823 <NA> <NA> <NA>
10057 chr1.92417507.92417983 L2c LINE LINE
10058 chr1.92417507.92417983 MIRb SINE SINE
10059 chr1.92444144.92444698 MIR3 SINE SINE
10060 chr1.92444144.92444698 L2c LINE LINE
10061 chr1.92446467.92447587 (T)n Other Simple_repeat
10062 chr1.92446467.92447587 MIR3 SINE SINE
10063 chr1.92480457.92481330 (CCGGCCG)n Other Simple_repeat
10064 chr1.92484662.92486298 <NA> <NA> <NA>
10065 chr1.92486571.92487380 (TTAA)n Other Simple_repeat
10066 chr1.92530212.92530683 L1PA7 LINE LINE
10067 chr1.92544797.92545017 <NA> <NA> <NA>
10068 chr1.92653746.92654467 L1PB4 LINE LINE
10069 chr1.92701057.92701595 MIR3 SINE SINE
10070 chr1.92701057.92701595 MIRb SINE SINE
10071 chr1.92723755.92724062 MER11A LTR LTR
10072 chr1.92736452.92736667 <NA> <NA> <NA>
10073 chr1.92747705.92748459 AluSx1 SINE SINE
10074 chr1.92747705.92748459 MLT1C LTR LTR
10075 chr1.92747705.92748459 MLT1G3 LTR LTR
10076 chr1.92747705.92748459 MLT1G3 LTR LTR
10077 chr1.92749004.92749389 AluSp SINE SINE
10078 chr1.92753994.92754331 L2c LINE LINE
10079 chr1.92755612.92756391 <NA> <NA> <NA>
10080 chr1.92756559.92756971 <NA> <NA> <NA>
10081 chr1.92784240.92785609 (GGC)n Other Simple_repeat
10082 chr1.92784240.92785609 (CCGC)n Other Simple_repeat
10083 chr1.92792341.92792749 (TTCC)n Other Simple_repeat
10084 chr1.92795245.92795605 L1MB4 LINE LINE
10085 chr1.92795245.92795605 AluSx1 SINE SINE
10086 chr1.92797998.92798327 AluJo SINE SINE
10087 chr1.92804543.92805363 AluJr SINE SINE
10088 chr1.92804543.92805363 (AAATA)n Other Simple_repeat
10089 chr1.92804543.92805363 L2 LINE LINE
10090 chr1.92804543.92805363 MER65D LTR LTR
10091 chr1.92804543.92805363 AluJb SINE SINE
10092 chr1.92804543.92805363 AluJb SINE SINE
10093 chr1.92804543.92805363 MER65D LTR LTR
10094 chr1.92810460.92810709 <NA> <NA> <NA>
10095 chr1.92811209.92811605 MamTip2 DNA DNA
10096 chr1.92811209.92811605 AluJb SINE SINE
10097 chr1.92820344.92820820 L2a LINE LINE
10098 chr1.92822854.92823316 FLAM_C SINE SINE
10099 chr1.92822854.92823316 AluJr SINE SINE
10100 chr1.92822854.92823316 Zaphod DNA DNA
10101 chr1.92831530.92832994 L2c LINE LINE
10102 chr1.92831530.92832994 (AACAA)n Other Simple_repeat
10103 chr1.92831530.92832994 MER5C DNA DNA
10104 chr1.92848258.92848643 L2a LINE LINE
10105 chr1.92858964.92859563 LTR82A LTR LTR
10106 chr1.92862600.92862918 L2c LINE LINE
10107 chr1.92907931.92908387 AluSx3 SINE SINE
10108 chr1.92907931.92908387 L2 LINE LINE
10109 chr1.92909395.92909688 LTR78 LTR LTR
10110 chr1.92924528.92924919 LTR3A LTR LTR
10111 chr1.92924528.92924919 L1MEf LINE LINE
10112 chr1.92934548.92935070 MIR3 SINE SINE
10113 chr1.92950255.92950714 L2c LINE LINE
10114 chr1.92950255.92950714 AluJr SINE SINE
10115 chr1.92960419.92962623 MamSINE1 SINE SINE
10116 chr1.92960419.92962623 (CCCGG)n Other Simple_repeat
10117 chr1.92960419.92962623 (T)n Other Simple_repeat
10118 chr1.92970938.92971509 Tigger15a DNA DNA
10119 chr1.92970938.92971509 MIR SINE SINE
10120 chr1.92994027.92994572 ERVL-E-int LTR LTR
10121 chr1.92994027.92994572 ERVL-E-int LTR LTR
10122 chr1.92994027.92994572 AluSp SINE SINE
10123 chr1.93004610.93005014 L1MA9 LINE LINE
10124 chr1.93004610.93005014 L1MA9 LINE LINE
10125 chr1.93004610.93005014 L2a LINE LINE
10126 chr1.93008109.93008643 MLT1K LTR LTR
10127 chr1.93013343.93013995 MER20 DNA DNA
10128 chr1.93015353.93016763 MIRb SINE SINE
10129 chr1.93025471.93026057 MIRb SINE SINE
10130 chr1.93025471.93026057 L2c LINE LINE
10131 chr1.93025471.93026057 MIRc SINE SINE
10132 chr1.93033560.93034013 MER45B DNA DNA
10133 chr1.93062074.93062635 MIR3 SINE SINE
10134 chr1.93062074.93062635 MLT1H1 LTR LTR
10135 chr1.93078653.93080145 <NA> <NA> <NA>
10136 chr1.93080555.93080710 <NA> <NA> <NA>
10137 chr1.93093418.93093868 HAL1 LINE LINE
10138 chr1.93093418.93093868 FAM SINE SINE
10139 chr1.93129619.93130009 (TTGA)n Other Simple_repeat
10140 chr1.93129619.93130009 L2a LINE LINE
10141 chr1.93147539.93147862 Tigger7 DNA DNA
10142 chr1.93172688.93173277 L1MA7 LINE LINE
10143 chr1.93179333.93181048 AluSx SINE SINE
10144 chr1.93179333.93181048 (GCCTC)n Other Simple_repeat
10145 chr1.93179333.93181048 (GGC)n Other Simple_repeat
10146 chr1.93179333.93181048 FLAM_C SINE SINE
10147 chr1.93199220.93199680 MER52A LTR LTR
10148 chr1.93255247.93255618 AluSg4 SINE SINE
10149 chr1.93255247.93255618 AluJb SINE SINE
10150 chr1.93324895.93325253 MER112 DNA DNA
10151 chr1.93331493.93331868 <NA> <NA> <NA>
10152 chr1.93338126.93338875 MLT1O LTR LTR
10153 chr1.93345180.93346954 (GCAGCG)n Other Simple_repeat
10154 chr1.93345180.93346954 (GGC)n Other Simple_repeat
10155 chr1.93374479.93374867 L1MA3 LINE LINE
10156 chr1.93430541.93430904 L1ME1 LINE LINE
10157 chr1.93430541.93430904 AluJb SINE SINE
10158 chr1.93435155.93435489 MER52A LTR LTR
10159 chr1.93442262.93442700 LTR3B LTR LTR
10160 chr1.93447735.93449648 (CCCCCTC)n Other Simple_repeat
10161 chr1.93447735.93449648 (CCTTT)n Other Simple_repeat
10162 chr1.93447735.93449648 L3 LINE LINE
10163 chr1.93552695.93553452 <NA> <NA> <NA>
10164 chr1.93566074.93566773 L2 LINE LINE
10165 chr1.93566074.93566773 AluSz SINE SINE
10166 chr1.93567243.93567871 <NA> <NA> <NA>
10167 chr1.93575612.93576011 <NA> <NA> <NA>
10168 chr1.93579861.93580186 <NA> <NA> <NA>
10169 chr1.93584872.93585811 MER129 Other LTR?
10170 chr1.93584872.93585811 AluJb SINE SINE
10171 chr1.93588257.93588506 <NA> <NA> <NA>
10172 chr1.93592642.93593418 MER5C DNA DNA
10173 chr1.93592642.93593418 AluJb SINE SINE
10174 chr1.93605918.93606302 <NA> <NA> <NA>
10175 chr1.93620778.93621075 <NA> <NA> <NA>
10176 chr1.93623835.93624198 <NA> <NA> <NA>
10177 chr1.93625591.93625904 <NA> <NA> <NA>
10178 chr1.93629397.93629892 <NA> <NA> <NA>
10179 chr1.93631684.93632161 <NA> <NA> <NA>
10180 chr1.93638469.93638739 <NA> <NA> <NA>
10181 chr1.93641616.93641985 MER46C DNA DNA
10182 chr1.93661967.93663084 L3 LINE LINE
10183 chr1.93664231.93665266 AluSp SINE SINE
10184 chr1.93664231.93665266 MamRTE1 LINE LINE
10185 chr1.93672155.93673009 L2a LINE LINE
10186 chr1.93675249.93676073 GA-rich Other Low_complexity
10187 chr1.93675249.93676073 A-rich Other Low_complexity
10188 chr1.93680491.93682099 (CCTTC)n Other Simple_repeat
10189 chr1.93680491.93682099 (GCTCCG)n Other Simple_repeat
10190 chr1.93693014.93693735 MER5A1 DNA DNA
10191 chr1.93701634.93702021 <NA> <NA> <NA>
10192 chr1.93702467.93703030 <NA> <NA> <NA>
10193 chr1.93703750.93704105 L2a LINE LINE
10194 chr1.93703750.93704105 MER3 DNA DNA
10195 chr1.93708840.93709591 <NA> <NA> <NA>
10196 chr1.93715443.93716319 MIRc SINE SINE
10197 chr1.93715443.93716319 L1ME4b LINE LINE
10198 chr1.93717084.93717276 MLT1H LTR LTR
10199 chr1.93722979.93723555 <NA> <NA> <NA>
10200 chr1.93735801.93736068 <NA> <NA> <NA>
10201 chr1.93751784.93752361 <NA> <NA> <NA>
10202 chr1.93754450.93754751 MIRc SINE SINE
10203 chr1.93754450.93754751 Tigger3b DNA DNA
10204 chr1.93755294.93755585 Tigger3b DNA DNA
10205 chr1.93779588.93780087 L2a LINE LINE
10206 chr1.93804426.93804647 MER44B DNA DNA
10207 chr1.93814081.93814457 L1MC4 LINE LINE
10208 chr1.93814081.93814457 U2 Other snRNA
10209 chr1.93814081.93814457 MIR SINE SINE
10210 chr1.93816846.93817269 <NA> <NA> <NA>
10211 chr1.93827925.93828183 MER39 LTR LTR
10212 chr1.93827925.93828183 AluJo SINE SINE
10213 chr1.93845627.93848198 LTR40c LTR LTR
10214 chr1.93845627.93848198 MIR SINE SINE
10215 chr1.93845627.93848198 tRNA-Arg-AGA Other tRNA
10216 chr1.93845627.93848198 (GCG)n Other Simple_repeat
10217 chr1.93845627.93848198 MER5A DNA DNA
10218 chr1.93850811.93850987 LTR13 LTR LTR
10219 chr1.93878430.93879551 <NA> <NA> <NA>
10220 chr1.93893980.93894242 AluJb SINE SINE
10221 chr1.93908671.93910055 (GCGG)n Other Simple_repeat
10222 chr1.93908671.93910055 (CGG)n Other Simple_repeat
10223 chr1.93969159.93969781 Tigger3b DNA DNA
10224 chr1.93980458.93980944 MLT1J LTR LTR
10225 chr1.93995916.93996306 <NA> <NA> <NA>
10226 chr1.94012180.94013033 L2c LINE LINE
10227 chr1.94020551.94021500 <NA> <NA> <NA>
10228 chr1.94025984.94026316 MIRb SINE SINE
10229 chr1.94033820.94034470 LTR3B_ LTR LTR
10230 chr1.94039524.94040532 <NA> <NA> <NA>
10231 chr1.94045404.94046097 MIR SINE SINE
10232 chr1.94061344.94062467 <NA> <NA> <NA>
10233 chr1.94068127.94068762 MamRTE1 LINE LINE
10234 chr1.94078879.94079292 (CA)n Other Simple_repeat
10235 chr1.94090682.94091083 L2c LINE LINE
10236 chr1.94092226.94092642 <NA> <NA> <NA>
10237 chr1.94119932.94120318 <NA> <NA> <NA>
10238 chr1.94122285.94122635 MIRc SINE SINE
10239 chr1.94122285.94122635 (TGA)n Other Simple_repeat
10240 chr1.94126187.94126489 MER91A DNA DNA
10241 chr1.94126187.94126489 MER91A DNA DNA
10242 chr1.94126187.94126489 MLT1O LTR LTR
10243 chr1.94130817.94131628 AluY SINE SINE
10244 chr1.94130817.94131628 (AAC)n Other Simple_repeat
10245 chr1.94160830.94161211 <NA> <NA> <NA>
10246 chr1.94183164.94183715 L1MA5A LINE LINE
10247 chr1.94235920.94236578 <NA> <NA> <NA>
10248 chr1.94236673.94238021 MIR SINE SINE
10249 chr1.94246729.94248047 <NA> <NA> <NA>
10250 chr1.94258855.94259388 MIRb SINE SINE
10251 chr1.94258855.94259388 MLT1C LTR LTR
10252 chr1.94265930.94266460 <NA> <NA> <NA>
10253 chr1.94281184.94282019 <NA> <NA> <NA>
10254 chr1.94286841.94287412 MER21B LTR LTR
10255 chr1.94286841.94287412 THE1D LTR LTR
10256 chr1.94299865.94300547 L2b LINE LINE
10257 chr1.94299865.94300547 L2b LINE LINE
10258 chr1.94309303.94309637 MIRc SINE SINE
10259 chr1.94309303.94309637 L2 LINE LINE
10260 chr1.94317202.94317485 L1MB3 LINE LINE
10261 chr1.94317202.94317485 AluJo SINE SINE
10262 chr1.94322808.94323044 L2a LINE LINE
10263 chr1.94322808.94323044 L2c LINE LINE
10264 chr1.94325380.94326202 L4_A_Mam LINE LINE
10265 chr1.94325380.94326202 Tigger19b DNA DNA
10266 chr1.94327086.94327637 <NA> <NA> <NA>
10267 chr1.94329305.94329571 <NA> <NA> <NA>
10268 chr1.94333075.94333349 <NA> <NA> <NA>
10269 chr1.94334269.94335040 MIRb SINE SINE
10270 chr1.94335637.94336133 <NA> <NA> <NA>
10271 chr1.94358888.94359932 L1ME3A LINE LINE
10272 chr1.94358888.94359932 MIR SINE SINE
10273 chr1.94358888.94359932 L1MC2 LINE LINE
10274 chr1.94383992.94384432 MIR SINE SINE
10275 chr1.94383992.94384432 MIRb SINE SINE
10276 chr1.94384714.94385341 <NA> <NA> <NA>
10277 chr1.94417251.94419251 MER112 DNA DNA
10278 chr1.94417251.94419251 (GCC)n Other Simple_repeat
10279 chr1.94417251.94419251 G-rich Other Low_complexity
10280 chr1.94481404.94481860 MLT1L LTR LTR
10281 chr1.94503164.94503590 MER30 DNA DNA
10282 chr1.94503164.94503590 L2c LINE LINE
10283 chr1.94527316.94528078 AluSz6 SINE SINE
10284 chr1.94540930.94542582 MIRc SINE SINE
10285 chr1.94552030.94552590 MIR SINE SINE
10286 chr1.94562736.94563508 MER1A DNA DNA
10287 chr1.94579746.94580555 L1PA11 LINE LINE
10288 chr1.94590075.94591077 MLT1M LTR LTR
10289 chr1.94599485.94599890 L2b LINE LINE
10290 chr1.94616522.94616874 <NA> <NA> <NA>
10291 chr1.94621283.94621783 <NA> <NA> <NA>
10292 chr1.94622728.94623194 LTR16C LTR LTR
10293 chr1.94628140.94628420 <NA> <NA> <NA>
10294 chr1.94629662.94630258 L4_A_Mam LINE LINE
10295 chr1.94629662.94630258 (TTTACC)n Other Simple_repeat
10296 chr1.94642556.94643191 L2a LINE LINE
10297 chr1.94646171.94646688 L2c LINE LINE
10298 chr1.94648207.94648488 <NA> <NA> <NA>
10299 chr1.94653733.94654331 <NA> <NA> <NA>
10300 chr1.94657863.94658617 LTR7Y LTR LTR
10301 chr1.94657863.94658617 MIR3 SINE SINE
10302 chr1.94661076.94661246 MIRc SINE SINE
10303 chr1.94698373.94699352 L2a LINE LINE
10304 chr1.94698373.94699352 MIRb SINE SINE
10305 chr1.94698373.94699352 AluJr SINE SINE
10306 chr1.94700853.94701044 <NA> <NA> <NA>
10307 chr1.94705800.94706067 LTR16C LTR LTR
10308 chr1.94709952.94710195 <NA> <NA> <NA>
10309 chr1.94713655.94714026 L2a LINE LINE
10310 chr1.94727818.94728456 MIRb SINE SINE
10311 chr1.94727818.94728456 LTR33 LTR LTR
10312 chr1.94730430.94730757 AluY SINE SINE
10313 chr1.94730430.94730757 AluSz6 SINE SINE
10314 chr1.94737277.94737744 <NA> <NA> <NA>
10315 chr1.94739600.94740122 <NA> <NA> <NA>
10316 chr1.94753433.94753977 MLT1O LTR LTR
10317 chr1.94755733.94756097 L2b LINE LINE
10318 chr1.94792556.94793630 MIRb SINE SINE
10319 chr1.94801536.94802669 L1MC LINE LINE
10320 chr1.94801536.94802669 MER96 DNA DNA
10321 chr1.94806577.94806773 MIR3 SINE SINE
10322 chr1.94806577.94806773 (TTTCCC)n Other Simple_repeat
10323 chr1.94806577.94806773 LTR35B LTR LTR
10324 chr1.94808215.94808416 <NA> <NA> <NA>
10325 chr1.94817789.94818045 L1MEh LINE LINE
10326 chr1.94817789.94818045 Charlie10b DNA DNA
10327 chr1.94817789.94818045 L1MEh LINE LINE
10328 chr1.94819661.94820671 L1MEh LINE LINE
10329 chr1.94819661.94820671 MIR SINE SINE
10330 chr1.94819661.94820671 (GCCCCG)n Other Simple_repeat
10331 chr1.94840383.94840992 AluJb SINE SINE
10332 chr1.94840383.94840992 MamRep38 DNA DNA
10333 chr1.94840383.94840992 Tigger3a DNA DNA
10334 chr1.94846243.94846757 MER5B DNA DNA
10335 chr1.94846243.94846757 Charlie10b DNA DNA
10336 chr1.94851280.94851594 L2a LINE LINE
10337 chr1.94854270.94855487 MIRb SINE SINE
10338 chr1.94854270.94855487 MER20 DNA DNA
10339 chr1.94854270.94855487 (CAGCCC)n Other Simple_repeat
10340 chr1.94854270.94855487 MER20 DNA DNA
10341 chr1.94858409.94858518 (AC)n Other Simple_repeat
10342 chr1.94863247.94864461 <NA> <NA> <NA>
10343 chr1.94866346.94866782 <NA> <NA> <NA>
10344 chr1.94873720.94874349 <NA> <NA> <NA>
10345 chr1.94876422.94876673 <NA> <NA> <NA>
10346 chr1.94884149.94884499 <NA> <NA> <NA>
10347 chr1.94898583.94898990 <NA> <NA> <NA>
10348 chr1.94901857.94902426 <NA> <NA> <NA>
10349 chr1.94903389.94903879 <NA> <NA> <NA>
10350 chr1.94919266.94920333 UCON48 Other Unknown
10351 chr1.94919266.94920333 L3 LINE LINE
10352 chr1.94925562.94927885 GA-rich Other Low_complexity
10353 chr1.94925562.94927885 (AGC)n Other Simple_repeat
10354 chr1.94925562.94927885 (GGCGCG)n Other Simple_repeat
10355 chr1.94925562.94927885 (CCCGCC)n Other Simple_repeat
10356 chr1.94938184.94938548 L2a LINE LINE
10357 chr1.94947231.94947951 MLT1O LTR LTR
10358 chr1.94947231.94947951 AluSx SINE SINE
10359 chr1.94949784.94949976 MER68 LTR LTR
10360 chr1.94954009.94954966 (CA)n Other Simple_repeat
10361 chr1.94954009.94954966 (TC)n Other Simple_repeat
10362 chr1.94954009.94954966 (T)n Other Simple_repeat
10363 chr1.94954009.94954966 L2 LINE LINE
10364 chr1.94955715.94956324 MLT1H LTR LTR
10365 chr1.94955715.94956324 L2 LINE LINE
10366 chr1.94974690.94975314 MLT1G LTR LTR
10367 chr1.94974690.94975314 L1MB7 LINE LINE
10368 chr1.94976949.94977361 MLT1E3 LTR LTR
10369 chr1.94976949.94977361 FLAM_C SINE SINE
10370 chr1.94983395.94983641 MIRb SINE SINE
10371 chr1.94992758.94993187 MIRb SINE SINE
10372 chr1.95018500.95019045 AluSz SINE SINE
10373 chr1.95018500.95019045 (GGAA)n Other Simple_repeat
10374 chr1.95023536.95023970 <NA> <NA> <NA>
10375 chr1.95039466.95040125 AluJb SINE SINE
10376 chr1.95041514.95041843 AluJo SINE SINE
10377 chr1.95043298.95043893 MER20 DNA DNA
10378 chr1.95061444.95061948 (GA)n Other Simple_repeat
10379 chr1.95061444.95061948 MLT1O LTR LTR
10380 chr1.95068947.95069254 L2 LINE LINE
10381 chr1.95068947.95069254 FLAM_C SINE SINE
10382 chr1.95072400.95073645 (T)n Other Simple_repeat
10383 chr1.95084289.95084821 <NA> <NA> <NA>
10384 chr1.95086911.95087625 LTR48 LTR LTR
10385 chr1.95094888.95095229 MIRb SINE SINE
10386 chr1.95116653.95118221 (GCCGGA)n Other Simple_repeat
10387 chr1.95116653.95118221 L1M4b LINE LINE
10388 chr1.95132570.95133230 L2b LINE LINE
10389 chr1.95132570.95133230 L1PA4 LINE LINE
10390 chr1.95132570.95133230 L1PA4 LINE LINE
10391 chr1.95138126.95138687 Tigger3b DNA DNA
10392 chr1.95169709.95169841 AluJb SINE SINE
10393 chr1.95179397.95179922 MER58A DNA DNA
10394 chr1.95179397.95179922 L2c LINE LINE
10395 chr1.95179397.95179922 L2c LINE LINE
10396 chr1.95197770.95198445 <NA> <NA> <NA>
10397 chr1.95207334.95207885 L2b LINE LINE
10398 chr1.95207334.95207885 MLT1D LTR LTR
10399 chr1.95223208.95223440 MIR3 SINE SINE
10400 chr1.95233325.95234780 L2a LINE LINE
10401 chr1.95233325.95234780 (GCCCC)n Other Simple_repeat
10402 chr1.95237234.95237459 <NA> <NA> <NA>
10403 chr1.95247687.95248130 (T)n Other Simple_repeat
10404 chr1.95249978.95250250 LTR33B LTR LTR
10405 chr1.95282665.95282901 <NA> <NA> <NA>
10406 chr1.95308970.95309257 <NA> <NA> <NA>
10407 chr1.95323259.95323590 L2a LINE LINE
10408 chr1.95339957.95340399 L2b LINE LINE
10409 chr1.95352838.95353519 L2a LINE LINE
10410 chr1.95352838.95353519 MIRc SINE SINE
10411 chr1.95359351.95359739 MER97c DNA DNA
10412 chr1.95359351.95359739 L2a LINE LINE
10413 chr1.95360770.95361175 MIR1_Amn SINE SINE
10414 chr1.95384541.95384983 <NA> <NA> <NA>
10415 chr1.95406585.95408105 L2c LINE LINE
10416 chr1.95406585.95408105 MIR SINE SINE
10417 chr1.95451887.95452357 <NA> <NA> <NA>
10418 chr1.95473261.95474028 Tigger11a DNA DNA
10419 chr1.95473261.95474028 (AAC)n Other Simple_repeat
10420 chr1.95473261.95474028 MIR SINE SINE
10421 chr1.95473261.95474028 MIR3 SINE SINE
10422 chr1.95500269.95500508 MER65B LTR LTR
10423 chr1.95535114.95535608 LTR16C LTR LTR
10424 chr1.95537091.95537502 <NA> <NA> <NA>
10425 chr1.95547056.95547641 <NA> <NA> <NA>
10426 chr1.95549083.95549634 L2c LINE LINE
10427 chr1.95627323.95627691 L2a LINE LINE
10428 chr1.95631558.95632203 L1PA8 LINE LINE
10429 chr1.95640822.95641383 <NA> <NA> <NA>
10430 chr1.95693696.95694312 <NA> <NA> <NA>
10431 chr1.95742701.95743254 L1PB1 LINE LINE
10432 chr1.95742701.95743254 L1PB1 LINE LINE
10433 chr1.95841077.95842310 L1MA4A LINE LINE
10434 chr1.95841077.95842310 (GCTCT)n Other Simple_repeat
10435 chr1.95841077.95842310 MLT1H2 LTR LTR
10436 chr1.95935708.95936357 L2c LINE LINE
10437 chr1.95935708.95936357 MSTB2 LTR LTR
10438 chr1.95949269.95949560 <NA> <NA> <NA>
10439 chr1.95953092.95953440 (GT)n Other Simple_repeat
10440 chr1.95974641.95974949 L1PA8 LINE LINE
10441 chr1.95991967.95992829 L2a LINE LINE
10442 chr1.96074405.96075395 UCON12A Other Unknown
10443 chr1.96116779.96117150 <NA> <NA> <NA>
10444 chr1.96127287.96127681 Tigger1 DNA DNA
10445 chr1.96128661.96129217 L2 LINE LINE
10446 chr1.96128661.96129217 MLT1H LTR LTR
10447 chr1.96234229.96234794 MIRc SINE SINE
10448 chr1.96234229.96234794 MER134 Other DNA?
10449 chr1.96362430.96363173 L2a LINE LINE
10450 chr1.96362430.96363173 AluSx1 SINE SINE
10451 chr1.96370374.96371220 MER50 LTR LTR
10452 chr1.96370374.96371220 (C)n Other Simple_repeat
10453 chr1.96370374.96371220 L3b LINE LINE
10454 chr1.96370374.96371220 AluY SINE SINE
10455 chr1.96388875.96389217 MLT1J LTR LTR
10456 chr1.96414627.96414962 LTR16C LTR LTR
10457 chr1.96416016.96416590 MLT1J2 LTR LTR
10458 chr1.96472436.96472756 LTR54 LTR LTR
10459 chr1.96472436.96472756 MLT1D LTR LTR
10460 chr1.96473918.96474292 <NA> <NA> <NA>
10461 chr1.96522105.96522789 L2c LINE LINE
10462 chr1.96522105.96522789 L2b LINE LINE
10463 chr1.96524022.96524513 OldhAT1 DNA DNA
10464 chr1.96524022.96524513 (AGTG)n Other Simple_repeat
10465 chr1.96538092.96538900 MIR3 SINE SINE
10466 chr1.96538092.96538900 MLT1I LTR LTR
10467 chr1.96579684.96579911 MLT1I LTR LTR
10468 chr1.96584375.96584952 AluYk11 SINE SINE
10469 chr1.96584375.96584952 L3 LINE LINE
10470 chr1.96596308.96596555 Tigger12 DNA DNA
10471 chr1.96634837.96635197 MER45A DNA DNA
10472 chr1.96634837.96635197 MIRb SINE SINE
10473 chr1.96660403.96660787 LTR47A2 LTR LTR
10474 chr1.96710805.96711509 L3 LINE LINE
10475 chr1.96710805.96711509 CR1-3_Croc LINE LINE
10476 chr1.96710805.96711509 L2a LINE LINE
10477 chr1.96721212.96722855 (CGC)n Other Simple_repeat
10478 chr1.96721212.96722855 G-rich Other Low_complexity
10479 chr1.96741300.96741939 AluJb SINE SINE
10480 chr1.96741300.96741939 (TTGT)n Other Simple_repeat
10481 chr1.96741300.96741939 L1M5 LINE LINE
10482 chr1.96762722.96763559 SVA_D Retroposon Retroposon
10483 chr1.96800549.96800712 AluJr SINE SINE
10484 chr1.96819198.96819476 <NA> <NA> <NA>
10485 chr1.96862691.96863367 L1MA4A LINE LINE
10486 chr1.96951972.96952257 Plat_L3 LINE LINE
10487 chr1.96951972.96952257 L3b LINE LINE
10488 chr1.96951972.96952257 (GT)n Other Simple_repeat
10489 chr1.96951972.96952257 L3b LINE LINE
10490 chr1.96966642.96967027 L1PA12 LINE LINE
10491 chr1.96966642.96967027 AluSx1 SINE SINE
10492 chr1.96973390.96974092 LTR81C LTR LTR
10493 chr1.96973390.96974092 LTR81 LTR LTR
10494 chr1.96992813.96993293 MER39 LTR LTR
10495 chr1.96992813.96993293 L2 LINE LINE
10496 chr1.96995413.96995816 <NA> <NA> <NA>
10497 chr1.96997781.96998250 OldhAT1 DNA DNA
10498 chr1.96997781.96998250 UCON46 Other Unknown
10499 chr1.96998863.96999450 MLT1G1 LTR LTR
10500 chr1.96998863.96999450 MER112 DNA DNA
10501 chr1.96998863.96999450 MIR3 SINE SINE
10502 chr1.97004182.97004569 L2a LINE LINE
10503 chr1.97005947.97006534 <NA> <NA> <NA>
10504 chr1.97050573.97050886 <NA> <NA> <NA>
10505 chr1.97061556.97062098 MER61D LTR LTR
10506 chr1.97094335.97094755 L2 LINE LINE
10507 chr1.97138207.97138932 <NA> <NA> <NA>
10508 chr1.97168229.97168476 L3 LINE LINE
10509 chr1.97168229.97168476 MIRb SINE SINE
10510 chr1.97190415.97190630 MER5A DNA DNA
10511 chr1.97192780.97193395 L2a LINE LINE
10512 chr1.97192780.97193395 L1ME1 LINE LINE
10513 chr1.97197658.97197953 <NA> <NA> <NA>
10514 chr1.97210418.97210863 L2b LINE LINE
10515 chr1.97245800.97246253 (TTCACT)n Other Simple_repeat
10516 chr1.97247137.97247684 MIRb SINE SINE
10517 chr1.97247137.97247684 L1ME2 LINE LINE
10518 chr1.97270702.97271276 L2c LINE LINE
10519 chr1.97277620.97278545 L2 LINE LINE
10520 chr1.97297196.97297702 <NA> <NA> <NA>
10521 chr1.97332756.97333211 Tigger12 DNA DNA
10522 chr1.97332756.97333211 AluSx3 SINE SINE
10523 chr1.97334372.97334997 MIRb SINE SINE
10524 chr1.97334372.97334997 L2a LINE LINE
10525 chr1.97340899.97341480 (TC)n Other Simple_repeat
10526 chr1.97348542.97349137 MIRb SINE SINE
10527 chr1.97384037.97384836 AluJo SINE SINE
10528 chr1.97384037.97384836 L2a LINE LINE
10529 chr1.97507918.97508364 CR1-3_Croc LINE LINE
10530 chr1.97507918.97508364 L2a LINE LINE
10531 chr1.97508576.97509391 MIR3 SINE SINE
10532 chr1.97508576.97509391 MIRb SINE SINE
10533 chr1.97508576.97509391 MLT1H LTR LTR
10534 chr1.97508576.97509391 MLT1H-int LTR LTR
10535 chr1.97518197.97518525 A-rich Other Low_complexity
10536 chr1.97518197.97518525 (AC)n Other Simple_repeat
10537 chr1.97525487.97525946 L2c LINE LINE
10538 chr1.97525487.97525946 (AG)n Other Simple_repeat
10539 chr1.97525487.97525946 (GT)n Other Simple_repeat
10540 chr1.97567376.97567590 <NA> <NA> <NA>
10541 chr1.97581440.97582113 L2c LINE LINE
10542 chr1.97581440.97582113 AluJr SINE SINE
10543 chr1.97581440.97582113 L2c LINE LINE
10544 chr1.97581440.97582113 LTR80B LTR LTR
10545 chr1.97630795.97631437 <NA> <NA> <NA>
10546 chr1.97632044.97632500 <NA> <NA> <NA>
10547 chr1.97680549.97681332 ERV3-16A3_I-int LTR LTR
10548 chr1.97680549.97681332 MIR SINE SINE
10549 chr1.97767321.97767713 MLT1H LTR LTR
10550 chr1.97796772.97797720 UCON96 Other Unknown
10551 chr1.97849813.97850277 <NA> <NA> <NA>
10552 chr1.97920475.97921584 (GCGGC)n Other Simple_repeat
10553 chr1.97937978.97938422 <NA> <NA> <NA>
10554 chr1.97999315.97999813 L2a LINE LINE
10555 chr1.97999315.97999813 L2a LINE LINE
10556 chr1.98030515.98030831 <NA> <NA> <NA>
10557 chr1.98044436.98045790 (AAAC)n Other Simple_repeat
10558 chr1.98045922.98046482 (GCTGCC)n Other Simple_repeat
10559 chr1.98048211.98048688 (CCTCCAC)n Other Simple_repeat
10560 chr1.98053042.98054560 (TG)n Other Simple_repeat
10561 chr1.98053042.98054560 (GA)n Other Simple_repeat
10562 chr1.98053042.98054560 A-rich Other Low_complexity
10563 chr1.98059761.98059883 <NA> <NA> <NA>
10564 chr1.98086288.98086401 AluSz6 SINE SINE
10565 chr1.98086555.98087319 (AT)n Other Simple_repeat
10566 chr1.98086555.98087319 L2b LINE LINE
10567 chr1.98133005.98133600 <NA> <NA> <NA>
10568 chr1.98197288.98197999 L2 LINE LINE
10569 chr1.98210008.98210748 (T)n Other Simple_repeat
10570 chr1.98221776.98222375 MER5A1 DNA DNA
10571 chr1.98221776.98222375 GA-rich Other Low_complexity
10572 chr1.98263751.98264219 MIR SINE SINE
10573 chr1.98277114.98277573 PABL_A LTR LTR
10574 chr1.98293184.98293470 MIRc SINE SINE
10575 chr1.98316245.98316703 <NA> <NA> <NA>
10576 chr1.98323458.98324383 L2a LINE LINE
10577 chr1.98323458.98324383 MLT2F LTR LTR
10578 chr1.98325924.98326405 Charlie23a DNA DNA
10579 chr1.98325924.98326405 AluJr4 SINE SINE
10580 chr1.98367423.98368137 MER52A LTR LTR
10581 chr1.98374020.98374364 Tigger3b DNA DNA
10582 chr1.98380222.98380889 MIR3 SINE SINE
10583 chr1.98380222.98380889 MIR SINE SINE
10584 chr1.98386777.98387383 L2a LINE LINE
10585 chr1.98389723.98390180 L2a LINE LINE
10586 chr1.98460116.98460439 <NA> <NA> <NA>
10587 chr1.98523290.98523571 L1MA3 LINE LINE
10588 chr1.98523290.98523571 L2a LINE LINE
10589 chr1.98552692.98553135 L1P2 LINE LINE
10590 chr1.98557861.98558327 L1MEc LINE LINE
10591 chr1.98661067.98662560 (GGC)n Other Simple_repeat
10592 chr1.98692448.98692732 Tigger2b_Pri DNA DNA
10593 chr1.98763590.98764112 MER20 DNA DNA
10594 chr1.98794355.98794883 MIRb SINE SINE
10595 chr1.98839935.98840786 (CAA)n Other Simple_repeat
10596 chr1.98989063.98989868 MER31-int LTR LTR
10597 chr1.98989063.98989868 LTR54 LTR LTR
10598 chr1.98991521.98992058 L3 LINE LINE
10599 chr1.98991521.98992058 MIRb SINE SINE
10600 chr1.99004197.99005839 (CCGAG)n Other Simple_repeat
10601 chr1.99004197.99005839 (GCCCCCT)n Other Simple_repeat
10602 chr1.99004197.99005839 (CGG)n Other Simple_repeat
10603 chr1.99004197.99005839 (TATA)n Other Simple_repeat
10604 chr1.99180373.99180785 <NA> <NA> <NA>
10605 chr1.99263991.99264968 <NA> <NA> <NA>
10606 chr1.99279565.99279800 <NA> <NA> <NA>
10607 chr1.99348620.99349067 LTR06 LTR LTR
10608 chr1.99359788.99360196 MIRb SINE SINE
10609 chr1.99359788.99360196 L2c LINE LINE
10610 chr1.99396998.99397435 L3 LINE LINE
10611 chr1.99396998.99397435 MIR SINE SINE
10612 chr1.99397961.99398221 L4_A_Mam LINE LINE
10613 chr1.99438738.99438961 MLT1E2-int LTR LTR
10614 chr1.99439622.99439985 MLT1E2 LTR LTR
10615 chr1.99441748.99442033 MIR SINE SINE
10616 chr1.99465299.99465849 L3 LINE LINE
10617 chr1.99465299.99465849 MLT1C LTR LTR
10618 chr1.99470816.99471572 L2a LINE LINE
10619 chr1.99470816.99471572 MIRb SINE SINE
10620 chr1.99470816.99471572 MIRb SINE SINE
10621 chr1.99481314.99481655 <NA> <NA> <NA>
10622 chr1.99503165.99503667 MIR3 SINE SINE
10623 chr1.99528924.99529389 MIR SINE SINE
10624 chr1.99528924.99529389 MLT1B LTR LTR
10625 chr1.99544414.99544725 <NA> <NA> <NA>
10626 chr1.99549000.99549504 <NA> <NA> <NA>
10627 chr1.99580395.99580980 <NA> <NA> <NA>
10628 chr1.99590729.99591404 L1MEi LINE LINE
10629 chr1.99590729.99591404 MER20 DNA DNA
10630 chr1.99599659.99600151 <NA> <NA> <NA>
10631 chr1.99623435.99623789 <NA> <NA> <NA>
10632 chr1.99645805.99646567 <NA> <NA> <NA>
10633 chr1.99657140.99657859 <NA> <NA> <NA>
10634 chr1.99677436.99677717 MLT1J LTR LTR
10635 chr1.99680095.99680679 <NA> <NA> <NA>
10636 chr1.99682271.99682782 AluSz SINE SINE
10637 chr1.99685468.99686130 MamRTE1 LINE LINE
10638 chr1.99685468.99686130 MamRTE1 LINE LINE
10639 chr1.99691086.99691635 <NA> <NA> <NA>
10640 chr1.99707478.99707821 <NA> <NA> <NA>
10641 chr1.99727793.99728307 LTR87 LTR LTR
10642 chr1.99737083.99737418 <NA> <NA> <NA>
10643 chr1.99741296.99741651 <NA> <NA> <NA>
10644 chr1.99766137.99766758 <NA> <NA> <NA>
10645 chr1.99768137.99768978 LTR8 LTR LTR
10646 chr1.99768137.99768978 AluSg SINE SINE
10647 chr1.99771324.99771866 MER65D LTR LTR
10648 chr1.99781630.99782192 MER51E LTR LTR
10649 chr1.99781630.99782192 FLAM_C SINE SINE
10650 chr1.99784109.99784561 AluJo SINE SINE
10651 chr1.99784109.99784561 L3 LINE LINE
10652 chr1.99808495.99809409 MLT1F2 LTR LTR
10653 chr1.99808495.99809409 LTR88b LTR LTR
10654 chr1.99818067.99818575 <NA> <NA> <NA>
10655 chr1.99849535.99850677 <NA> <NA> <NA>
10656 chr1.99856026.99856264 <NA> <NA> <NA>
10657 chr1.99886952.99887593 MER5A DNA DNA
10658 chr1.99935655.99935820 LTR28C LTR LTR
10659 chr1.99943030.99943748 MER34B-int LTR LTR
10660 chr1.99943030.99943748 FLAM_C SINE SINE
10661 chr1.99943030.99943748 LTR45 LTR LTR
10662 chr1.99943030.99943748 LTR14B LTR LTR
10663 chr1.99963105.99963465 L1MB4 LINE LINE
10664 chr1.99963105.99963465 MLT1I-int LTR LTR
10665 chr1.99969463.99970679 (GGA)n Other Simple_repeat
10666 chr1.99972480.99972762 AluSz SINE SINE
10667 chr1.99986812.99987203 AluJb SINE SINE
10668 chr1.99986812.99987203 MIR3 SINE SINE
10669 chr1.100009480.100010011 MER3 DNA DNA
10670 chr1.100009480.100010011 MER3 DNA DNA
10671 chr1.100036901.100037312 MLT1F1 LTR LTR
10672 chr1.100036901.100037312 L1MC4 LINE LINE
10673 chr1.100037697.100039199 MIRb SINE SINE
10674 chr1.100049468.100049780 L2c LINE LINE
10675 chr1.100099756.100100571 AluSz SINE SINE
10676 chr1.100099756.100100571 (TGAA)n Other Simple_repeat
10677 chr1.100099756.100100571 L2a LINE LINE
10678 chr1.100132504.100133569 <NA> <NA> <NA>
10679 chr1.100177774.100178533 MIRc SINE SINE
10680 chr1.100188527.100189545 L3b LINE LINE
10681 chr1.100188527.100189545 AluSz SINE SINE
10682 chr1.100213232.100214093 (A)n Other Simple_repeat
10683 chr1.100213232.100214093 MIRb SINE SINE
10684 chr1.100213232.100214093 L2b LINE LINE
10685 chr1.100217735.100218360 MIRb SINE SINE
10686 chr1.100217735.100218360 MIRb SINE SINE
10687 chr1.100217735.100218360 LTR16A1 LTR LTR
10688 chr1.100217735.100218360 (TTCTC)n Other Simple_repeat
10689 chr1.100217735.100218360 MIRb SINE SINE
10690 chr1.100229612.100229932 <NA> <NA> <NA>
10691 chr1.100248974.100250238 L2c LINE LINE
10692 chr1.100248974.100250238 L2c LINE LINE
10693 chr1.100248974.100250238 L2a LINE LINE
10694 chr1.100265586.100267021 <NA> <NA> <NA>
10695 chr1.100279363.100280604 AluJr SINE SINE
10696 chr1.100279363.100280604 L2b LINE LINE
10697 chr1.100351158.100353317 AluSz6 SINE SINE
10698 chr1.100351158.100353317 MamSINE1 SINE SINE
10699 chr1.100351158.100353317 (GT)n Other Simple_repeat
10700 chr1.100351158.100353317 (AGAAAG)n Other Simple_repeat
10701 chr1.100354075.100354254 <NA> <NA> <NA>
10702 chr1.100354992.100355301 <NA> <NA> <NA>
10703 chr1.100360726.100361197 Tigger19b DNA DNA
10704 chr1.100360726.100361197 A-rich Other Low_complexity
10705 chr1.100379029.100379431 <NA> <NA> <NA>
10706 chr1.100380389.100380883 L2c LINE LINE
10707 chr1.100391601.100392026 MIR3 SINE SINE
10708 chr1.100400467.100400752 <NA> <NA> <NA>
10709 chr1.100416868.100417335 MIR SINE SINE
10710 chr1.100416868.100417335 L2c LINE LINE
10711 chr1.100416868.100417335 L2a LINE LINE
10712 chr1.100440173.100440407 MER5A DNA DNA
10713 chr1.100443753.100444570 L2a LINE LINE
10714 chr1.100459147.100459816 (GA)n Other Simple_repeat
10715 chr1.100459147.100459816 MIRb SINE SINE
10716 chr1.100459147.100459816 MIR3 SINE SINE
10717 chr1.100463716.100464273 <NA> <NA> <NA>
10718 chr1.100469528.100469923 <NA> <NA> <NA>
10719 chr1.100538652.100540200 (CCACCT)n Other Simple_repeat
10720 chr1.100538652.100540200 (GCT)n Other Simple_repeat
10721 chr1.100596990.100598173 L2c LINE LINE
10722 chr1.100596990.100598173 MLT1J2 LTR LTR
10723 chr1.100596990.100598173 L2a LINE LINE
10724 chr1.100606395.100606852 <NA> <NA> <NA>
10725 chr1.100607398.100607891 (AAT)n Other Simple_repeat
10726 chr1.100621903.100622579 <NA> <NA> <NA>
10727 chr1.100706274.100707646 MIRc SINE SINE
10728 chr1.100719419.100720097 <NA> <NA> <NA>
10729 chr1.100757774.100758413 (T)n Other Simple_repeat
10730 chr1.100759191.100759528 MIRb SINE SINE
10731 chr1.100760528.100760865 <NA> <NA> <NA>
10732 chr1.100785608.100786091 MER72 LTR LTR
10733 chr1.100795486.100796250 L2c LINE LINE
10734 chr1.100799994.100800372 <NA> <NA> <NA>
10735 chr1.100810363.100810973 ERV3-16A3_I-int LTR LTR
10736 chr1.100860214.100860840 MSTA LTR LTR
10737 chr1.100884036.100884289 <NA> <NA> <NA>
10738 chr1.100894620.100896924 AluJb SINE SINE
10739 chr1.100894620.100896924 (GTGT)n Other Simple_repeat
10740 chr1.100924233.100924560 L2b LINE LINE
10741 chr1.100949592.100949886 L1PA6 LINE LINE
10742 chr1.100959457.100959850 MLT1F2 LTR LTR
10743 chr1.100959457.100959850 L2c LINE LINE
10744 chr1.100982792.100983211 <NA> <NA> <NA>
10745 chr1.100989401.100990488 THE1D LTR LTR
10746 chr1.101002434.101003357 MIRc SINE SINE
10747 chr1.101002434.101003357 MIR3 SINE SINE
10748 chr1.101002434.101003357 Tigger16b DNA DNA
10749 chr1.101002434.101003357 L2a LINE LINE
10750 chr1.101025261.101026560 <NA> <NA> <NA>
10751 chr1.101039177.101039643 L2c LINE LINE
10752 chr1.101039177.101039643 Tigger12 DNA DNA
10753 chr1.101039177.101039643 MSTA LTR LTR
10754 chr1.101043451.101044123 L2c LINE LINE
10755 chr1.101086710.101087108 <NA> <NA> <NA>
10756 chr1.101111339.101112387 <NA> <NA> <NA>
10757 chr1.101128278.101128639 <NA> <NA> <NA>
10758 chr1.101130479.101131629 Charlie17a DNA DNA
10759 chr1.101130479.101131629 L2c LINE LINE
10760 chr1.101130479.101131629 L2b LINE LINE
10761 chr1.101130479.101131629 (ACC)n Other Simple_repeat
10762 chr1.101136741.101137846 (TC)n Other Simple_repeat
10763 chr1.101136741.101137846 L2b LINE LINE
10764 chr1.101136741.101137846 MIR SINE SINE
10765 chr1.101145323.101145762 MIR SINE SINE
10766 chr1.101148896.101149628 LFSINE_Vert SINE SINE
10767 chr1.101150749.101151062 <NA> <NA> <NA>
10768 chr1.101152556.101153215 Charlie2b DNA DNA
10769 chr1.101152556.101153215 MIR SINE SINE
10770 chr1.101165721.101166384 MIR SINE SINE
10771 chr1.101165721.101166384 L2-3_Crp LINE LINE
10772 chr1.101165721.101166384 L2a LINE LINE
10773 chr1.101166637.101166982 MLT1J2 LTR LTR
10774 chr1.101174788.101175281 MLT1H1 LTR LTR
10775 chr1.101183278.101183670 <NA> <NA> <NA>
10776 chr1.101190384.101190782 L2a LINE LINE
10777 chr1.101200575.101200843 <NA> <NA> <NA>
10778 chr1.101203940.101204778 L2b LINE LINE
10779 chr1.101203940.101204778 L2b LINE LINE
10780 chr1.101203940.101204778 L2c LINE LINE
10781 chr1.101203940.101204778 MamRTE1 LINE LINE
10782 chr1.101203940.101204778 MIRb SINE SINE
10783 chr1.101220269.101220825 L2a LINE LINE
10784 chr1.101223393.101223794 MLT1F1 LTR LTR
10785 chr1.101223393.101223794 (TC)n Other Simple_repeat
10786 chr1.101223393.101223794 (CTC)n Other Simple_repeat
10787 chr1.101235411.101237597 (T)n Other Simple_repeat
10788 chr1.101235411.101237597 (T)n Other Simple_repeat
10789 chr1.101238692.101239629 <NA> <NA> <NA>
10790 chr1.101244882.101245317 AluJb SINE SINE
10791 chr1.101254017.101254311 MIR SINE SINE
10792 chr1.101254017.101254311 MIR3 SINE SINE
10793 chr1.101257859.101258407 AluJb SINE SINE
10794 chr1.101259682.101260134 MIRb SINE SINE
10795 chr1.101259682.101260134 FLAM_C SINE SINE
10796 chr1.101260530.101260953 <NA> <NA> <NA>
10797 chr1.101262812.101263090 <NA> <NA> <NA>
10798 chr1.101264724.101265102 <NA> <NA> <NA>
10799 chr1.101288084.101288896 AluSx3 SINE SINE
10800 chr1.101288084.101288896 MER102c DNA DNA
10801 chr1.101291557.101291931 MARNA DNA DNA
10802 chr1.101291557.101291931 L2c LINE LINE
10803 chr1.101302614.101303399 MIR SINE SINE
10804 chr1.101302614.101303399 MIRb SINE SINE
10805 chr1.101302614.101303399 Eulor5A Other DNA?
10806 chr1.101307409.101308123 MER39 LTR LTR
10807 chr1.101309404.101310211 <NA> <NA> <NA>
10808 chr1.101314302.101314666 MLT1J LTR LTR
10809 chr1.101357297.101357839 <NA> <NA> <NA>
10810 chr1.101366654.101367063 <NA> <NA> <NA>
10811 chr1.101371205.101371558 <NA> <NA> <NA>
10812 chr1.101389126.101389722 MER5A DNA DNA
10813 chr1.101389126.101389722 MER5A DNA DNA
10814 chr1.101389126.101389722 MER5A DNA DNA
10815 chr1.101389126.101389722 MIRb SINE SINE
10816 chr1.101389126.101389722 THE1B LTR LTR
10817 chr1.101407843.101408432 <NA> <NA> <NA>
10818 chr1.101420574.101420889 MLT2D LTR LTR
10819 chr1.101422498.101422929 Ricksha_c DNA DNA
10820 chr1.101437340.101438674 L3 LINE LINE
10821 chr1.101474123.101474297 <NA> <NA> <NA>
10822 chr1.101482252.101482826 MER21B LTR LTR
10823 chr1.101482252.101482826 LTR36 LTR LTR
10824 chr1.101507303.101508111 MLT1F LTR LTR
10825 chr1.101520214.101520745 L1MA4 LINE LINE
10826 chr1.101526687.101527129 MLT1H LTR LTR
10827 chr1.101547661.101547882 ERVL-E-int LTR LTR
10828 chr1.101588605.101588965 LTR53 LTR LTR
10829 chr1.101632633.101632885 <NA> <NA> <NA>
10830 chr1.101635408.101635974 L2c LINE LINE
10831 chr1.101635408.101635974 L2c LINE LINE
10832 chr1.101653499.101653723 L1MA4 LINE LINE
10833 chr1.101683484.101684163 MER94 DNA DNA
10834 chr1.101781337.101781766 <NA> <NA> <NA>
10835 chr1.101820051.101820517 L2a LINE LINE
10836 chr1.101846820.101847251 <NA> <NA> <NA>
10837 chr1.101849345.101849763 L2 LINE LINE
10838 chr1.101875635.101876345 <NA> <NA> <NA>
10839 chr1.101996550.101997352 (AGC)n Other Simple_repeat
10840 chr1.102045793.102046080 MER50C LTR LTR
10841 chr1.102085885.102086209 LTR10B2 LTR LTR
10842 chr1.102120699.102121434 L1M2 LINE LINE
10843 chr1.102191542.102192193 A-rich Other Low_complexity
10844 chr1.102252578.102253605 AluSx1 SINE SINE
10845 chr1.102252578.102253605 L1MC1 LINE LINE
10846 chr1.102333858.102334576 (AC)n Other Simple_repeat
10847 chr1.102380376.102380757 <NA> <NA> <NA>
10848 chr1.102434303.102434762 HUERS-P3-int LTR LTR
10849 chr1.102531169.102531498 <NA> <NA> <NA>
10850 chr1.102550826.102551025 THE1-int LTR LTR
10851 chr1.102550826.102551025 THE1-int LTR LTR
10852 chr1.102707247.102707534 L1PA13 LINE LINE
10853 chr1.102732923.102733403 GA-rich Other Low_complexity
10854 chr1.102732923.102733403 Charlie7a DNA DNA
10855 chr1.102761970.102762300 MIRc SINE SINE
10856 chr1.102761970.102762300 MIRb SINE SINE
10857 chr1.102796970.102797152 L3 LINE LINE
10858 chr1.102821703.102822084 MLT1E1A LTR LTR
10859 chr1.102851463.102852042 LTR101_Mam LTR LTR
10860 chr1.102851463.102852042 LTR101_Mam LTR LTR
10861 chr1.102879492.102880081 MIR3 SINE SINE
10862 chr1.102892084.102892622 MIRb SINE SINE
10863 chr1.102919757.102920060 MIRb SINE SINE
10864 chr1.102941322.102941905 L2c LINE LINE
10865 chr1.102966722.102967030 L2 LINE LINE
10866 chr1.103058281.103059008 Tigger1 DNA DNA
10867 chr1.103087323.103087600 L2b LINE LINE
10868 chr1.103106446.103107239 <NA> <NA> <NA>
10869 chr1.103108097.103109280 (CCCGCT)n Other Simple_repeat
10870 chr1.103108097.103109280 (CCCACCT)n Other Simple_repeat
10871 chr1.103171203.103171454 MLT1I LTR LTR
10872 chr1.103191211.103191836 <NA> <NA> <NA>
10873 chr1.103231816.103232332 L2a LINE LINE
10874 chr1.103250367.103250848 LTR33A_ LTR LTR
10875 chr1.103250367.103250848 LTR33A_ LTR LTR
10876 chr1.103371214.103371545 MER21A LTR LTR
10877 chr1.103371214.103371545 MER21A LTR LTR
10878 chr1.103525193.103526502 <NA> <NA> <NA>
10879 chr1.103529838.103530010 MER1B DNA DNA
10880 chr1.103569714.103570587 <NA> <NA> <NA>
10881 chr1.103580447.103580812 MER70B LTR LTR
10882 chr1.104057287.104057696 L1P3 LINE LINE
10883 chr1.104135075.104135461 LTR5_Hs LTR LTR
10884 chr1.104179256.104179706 L1MA7 LINE LINE
10885 chr1.104195500.104195724 AluJr SINE SINE
10886 chr1.104195500.104195724 MamRTE1 LINE LINE
10887 chr1.104239101.104239320 MIR3 SINE SINE
10888 chr1.104255719.104256229 LTR52 LTR LTR
10889 chr1.104269838.104270240 L1ME3 LINE LINE
10890 chr1.104269838.104270240 AluSx SINE SINE
10891 chr1.104648313.104648725 <NA> <NA> <NA>
10892 chr1.104671838.104672421 MLT1N2 LTR LTR
10893 chr1.104921619.104921869 (TATGTA)n Other Simple_repeat
10894 chr1.105137457.105138076 LTR18C LTR LTR
10895 chr1.105137457.105138076 HERVL18-int LTR LTR
10896 chr1.105172885.105173179 <NA> <NA> <NA>
10897 chr1.105344552.105344828 Tigger3b DNA DNA
10898 chr1.105373799.105374046 L1MB3 LINE LINE
10899 chr1.105373799.105374046 AluJo SINE SINE
10900 chr1.105373799.105374046 L1MB3 LINE LINE
10901 chr1.105386586.105387150 <NA> <NA> <NA>
10902 chr1.105784810.105785477 MLT1D LTR LTR
10903 chr1.105793661.105793983 <NA> <NA> <NA>
10904 chr1.105842073.105842719 LTR41 LTR LTR
10905 chr1.105842073.105842719 (GTTT)n Other Simple_repeat
10906 chr1.105842073.105842719 L1PA5 LINE LINE
10907 chr1.105872745.105873253 L1PA16 LINE LINE
10908 chr1.105884029.105884443 L1PA7 LINE LINE
10909 chr1.105934929.105935121 <NA> <NA> <NA>
10910 chr1.106023064.106023432 L2b LINE LINE
10911 chr1.106023064.106023432 AluSz SINE SINE
10912 chr1.106049671.106050093 MLT1H2 LTR LTR
10913 chr1.106049671.106050093 LTR78 LTR LTR
10914 chr1.106063610.106063841 <NA> <NA> <NA>
10915 chr1.106190577.106191289 L1M1 LINE LINE
10916 chr1.106209238.106209717 <NA> <NA> <NA>
10917 chr1.106224383.106224719 MIR SINE SINE
10918 chr1.106231534.106232000 ERV3-16A3_I-int LTR LTR
10919 chr1.106231534.106232000 ERV3-16A3_I-int LTR LTR
10920 chr1.106232236.106232671 LTR22E LTR LTR
10921 chr1.106232236.106232671 L1M1 LINE LINE
10922 chr1.106233447.106234052 MSTA-int LTR LTR
10923 chr1.106254745.106255067 <NA> <NA> <NA>
10924 chr1.106267974.106268399 <NA> <NA> <NA>
10925 chr1.106272460.106272980 <NA> <NA> <NA>
10926 chr1.106278560.106279196 MLT2B3 LTR LTR
10927 chr1.106278560.106279196 L1MD2 LINE LINE
10928 chr1.106289600.106289953 <NA> <NA> <NA>
10929 chr1.106290837.106290971 <NA> <NA> <NA>
10930 chr1.106324057.106324331 L1MC5a LINE LINE
10931 chr1.106324057.106324331 AluJb SINE SINE
10932 chr1.106414845.106415172 L1MEg LINE LINE
10933 chr1.106439508.106439900 MLT2B3 LTR LTR
10934 chr1.106458983.106459181 AmnSINE1 SINE SINE
10935 chr1.106465698.106466001 <NA> <NA> <NA>
10936 chr1.106680890.106681356 <NA> <NA> <NA>
10937 chr1.106682003.106682398 LTR8A LTR LTR
10938 chr1.106727247.106727590 L1MC3 LINE LINE
10939 chr1.106743431.106743695 <NA> <NA> <NA>
10940 chr1.106746778.106747011 <NA> <NA> <NA>
10941 chr1.106753116.106753388 <NA> <NA> <NA>
10942 chr1.106755789.106756247 MLT1C-int LTR LTR
10943 chr1.106768035.106768800 <NA> <NA> <NA>
10944 chr1.106831276.106831832 L1MEc LINE LINE
10945 chr1.106831276.106831832 MLT1D LTR LTR
10946 chr1.106879403.106880119 L1M1 LINE LINE
10947 chr1.106889079.106890035 <NA> <NA> <NA>
10948 chr1.106924394.106924847 MER97a DNA DNA
10949 chr1.106924394.106924847 MER5A1 DNA DNA
10950 chr1.106937202.106937435 <NA> <NA> <NA>
10951 chr1.106950157.106950611 (GT)n Other Simple_repeat
10952 chr1.106986637.106986894 LTR53 LTR LTR
10953 chr1.106998259.106998896 MER70A LTR LTR
10954 chr1.107056460.107057885 (CCGCG)n Other Simple_repeat
10955 chr1.107056460.107057885 (TGGAGC)n Other Simple_repeat
10956 chr1.107135418.107135715 <NA> <NA> <NA>
10957 chr1.107139860.107140703 (AGCAGC)n Other Simple_repeat
10958 chr1.107139860.107140703 G-rich Other Low_complexity
10959 chr1.107141270.107141489 (CTCCCG)n Other Simple_repeat
10960 chr1.107141596.107142343 (CA)n Other Simple_repeat
10961 chr1.107244737.107244933 (TCTG)n Other Simple_repeat
10962 chr1.107277078.107277399 LTR16B2 LTR LTR
10963 chr1.107354698.107354987 <NA> <NA> <NA>
10964 chr1.107396118.107396360 <NA> <NA> <NA>
10965 chr1.107430609.107430960 <NA> <NA> <NA>
10966 chr1.107525084.107525436 MIRb SINE SINE
10967 chr1.107525084.107525436 MIR SINE SINE
10968 chr1.107529656.107529845 <NA> <NA> <NA>
10969 chr1.107622734.107623267 (TGGA)n Other Simple_repeat
10970 chr1.107622734.107623267 MIRc SINE SINE
10971 chr1.107665424.107665863 L2b LINE LINE
10972 chr1.107670172.107670359 MIRc SINE SINE
10973 chr1.107670172.107670359 MIRb SINE SINE
10974 chr1.107782032.107782646 <NA> <NA> <NA>
10975 chr1.107788249.107788588 L2 LINE LINE
10976 chr1.107815117.107815504 MLT1N2 LTR LTR
10977 chr1.107815117.107815504 MLT1N2 LTR LTR
10978 chr1.107832209.107832465 <NA> <NA> <NA>
10979 chr1.107879353.107879696 L3 LINE LINE
10980 chr1.107879353.107879696 MARNA DNA DNA
10981 chr1.107936515.107937005 <NA> <NA> <NA>
10982 chr1.107963683.107964150 <NA> <NA> <NA>
10983 chr1.107964512.107965374 (GCC)n Other Simple_repeat
10984 chr1.107965418.107966068 <NA> <NA> <NA>
10985 chr1.107991648.107992033 <NA> <NA> <NA>
10986 chr1.108000745.108001084 (T)n Other Simple_repeat
10987 chr1.108009711.108010927 L1M5 LINE LINE
10988 chr1.108009711.108010927 MLT1K LTR LTR
10989 chr1.108016320.108017020 AluSq2 SINE SINE
10990 chr1.108045295.108046451 L2c LINE LINE
10991 chr1.108050837.108051340 <NA> <NA> <NA>
10992 chr1.108057641.108057857 <NA> <NA> <NA>
10993 chr1.108066848.108067345 MLT1B LTR LTR
10994 chr1.108067607.108067752 ERVL-E-int LTR LTR
10995 chr1.108068063.108068757 LTR33B LTR LTR
10996 chr1.108068063.108068757 HAL1 LINE LINE
10997 chr1.108068063.108068757 AluSz SINE SINE
10998 chr1.108072189.108073004 L1MEc LINE LINE
10999 chr1.108072189.108073004 LTR45 LTR LTR
11000 chr1.108107682.108107948 <NA> <NA> <NA>
11001 chr1.108117792.108118868 L2c LINE LINE
11002 chr1.108117792.108118868 L2c LINE LINE
11003 chr1.108125382.108125983 <NA> <NA> <NA>
11004 chr1.108149604.108150509 MIR SINE SINE
11005 chr1.108149604.108150509 L2 LINE LINE
11006 chr1.108182508.108182806 AluSx1 SINE SINE
11007 chr1.108199206.108201027 G-rich Other Low_complexity
11008 chr1.108502781.108503837 AluY SINE SINE
11009 chr1.108504938.108505441 L2a LINE LINE
11010 chr1.108504938.108505441 (AC)n Other Simple_repeat
11011 chr1.108504938.108505441 L2a LINE LINE
11012 chr1.108559613.108561236 (GGC)n Other Simple_repeat
11013 chr1.108570204.108570510 L2 LINE LINE
11014 chr1.108570996.108571332 L2 LINE LINE
11015 chr1.108598448.108598681 <NA> <NA> <NA>
11016 chr1.108600609.108600805 <NA> <NA> <NA>
11017 chr1.108601848.108602361 L1ME4b LINE LINE
11018 chr1.108601848.108602361 L2a LINE LINE
11019 chr1.108601848.108602361 MLT1C LTR LTR
11020 chr1.108602838.108603436 AluJb SINE SINE
11021 chr1.108602838.108603436 MLT1C LTR LTR
11022 chr1.108602838.108603436 L1ME4b LINE LINE
11023 chr1.108609817.108610624 L1PA10 LINE LINE
11024 chr1.108609817.108610624 L2a LINE LINE
11025 chr1.108643507.108644126 <NA> <NA> <NA>
11026 chr1.108660894.108661665 AluYa5 SINE SINE
11027 chr1.108660894.108661665 (CCGCGC)n Other Simple_repeat
11028 chr1.108670288.108670922 L1M1 LINE LINE
11029 chr1.108681472.108682079 AluSc SINE SINE
11030 chr1.108681472.108682079 L1MC LINE LINE
11031 chr1.108681472.108682079 LTR10D LTR LTR
11032 chr1.108691761.108693621 MIRb SINE SINE
11033 chr1.108691761.108693621 (CCCT)n Other Simple_repeat
11034 chr1.108691761.108693621 (GCAGCA)n Other Simple_repeat
11035 chr1.108704484.108705135 MamRep1879 DNA DNA
11036 chr1.108704484.108705135 LTR41C LTR LTR
11037 chr1.108709043.108709368 L2a LINE LINE
11038 chr1.108709043.108709368 ERV3-16A3_I-int LTR LTR
11039 chr1.108709043.108709368 MER96 DNA DNA
11040 chr1.108709043.108709368 LTR16 LTR LTR
11041 chr1.108716059.108716288 <NA> <NA> <NA>
11042 chr1.108718853.108720430 L2a LINE LINE
11043 chr1.108718853.108720430 (GA)n Other Simple_repeat
11044 chr1.108718853.108720430 LTR79 LTR LTR
11045 chr1.108718853.108720430 (CTTCC)n Other Simple_repeat
11046 chr1.108718853.108720430 L2a LINE LINE
11047 chr1.108721270.108721596 AluY SINE SINE
11048 chr1.108746386.108747546 <NA> <NA> <NA>
11049 chr1.108816270.108817134 <NA> <NA> <NA>
11050 chr1.108828045.108828783 AluSz6 SINE SINE
11051 chr1.108828045.108828783 (AAAC)n Other Simple_repeat
11052 chr1.108828045.108828783 G-rich Other Low_complexity
11053 chr1.108829511.108829805 <NA> <NA> <NA>
11054 chr1.108876672.108877479 AluSp SINE SINE
11055 chr1.108897909.108898363 <NA> <NA> <NA>
11056 chr1.108913063.108913516 L1ME3E LINE LINE
11057 chr1.108932608.108933105 AluJo SINE SINE
11058 chr1.108962744.108963793 AluSz SINE SINE
11059 chr1.108962744.108963793 (GTT)n Other Simple_repeat
11060 chr1.108962744.108963793 Charlie15b DNA DNA
11061 chr1.108962744.108963793 AluSx SINE SINE
11062 chr1.108999961.109000258 AluJb SINE SINE
11063 chr1.108999961.109000258 AluSg SINE SINE
11064 chr1.109006805.109007836 AluJb SINE SINE
11065 chr1.109006805.109007836 (A)n Other Simple_repeat
11066 chr1.109006805.109007836 AluJr SINE SINE
11067 chr1.109006805.109007836 MIRb SINE SINE
11068 chr1.109006805.109007836 AluSg4 SINE SINE
11069 chr1.109011295.109011856 A-rich Other Low_complexity
11070 chr1.109041227.109042410 (GGCGG)n Other Simple_repeat
11071 chr1.109075632.109076497 AluSx SINE SINE
11072 chr1.109084683.109084958 L2a LINE LINE
11073 chr1.109084683.109084958 AluJb SINE SINE
11074 chr1.109089297.109089459 <NA> <NA> <NA>
11075 chr1.109090373.109091456 <NA> <NA> <NA>
11076 chr1.109094153.109094582 AluSx1 SINE SINE
11077 chr1.109099819.109101447 FRAM SINE SINE
11078 chr1.109099819.109101447 AluJb SINE SINE
11079 chr1.109099819.109101447 AluJb SINE SINE
11080 chr1.109099819.109101447 AluY SINE SINE
11081 chr1.109112152.109112491 <NA> <NA> <NA>
11082 chr1.109112568.109113166 AluJb SINE SINE
11083 chr1.109113599.109114342 (GC)n Other Simple_repeat
11084 chr1.109113599.109114342 (CAG)n Other Simple_repeat
11085 chr1.109149992.109150258 MIRb SINE SINE
11086 chr1.109151195.109151555 MER5A DNA DNA
11087 chr1.109151195.109151555 (AGGG)n Other Simple_repeat
11088 chr1.109161877.109162104 <NA> <NA> <NA>
11089 chr1.109162260.109162742 L2a LINE LINE
11090 chr1.109185436.109185739 L2b LINE LINE
11091 chr1.109197236.109198649 AluJo SINE SINE
11092 chr1.109197236.109198649 (GT)n Other Simple_repeat
11093 chr1.109201265.109201551 <NA> <NA> <NA>
11094 chr1.109209170.109209351 Tigger7 DNA DNA
11095 chr1.109209170.109209351 Tigger7 DNA DNA
11096 chr1.109213575.109215071 (CTCCC)n Other Simple_repeat
11097 chr1.109218595.109218812 <NA> <NA> <NA>
11098 chr1.109239430.109239975 <NA> <NA> <NA>
11099 chr1.109240599.109241134 AluSx SINE SINE
11100 chr1.109249196.109249625 <NA> <NA> <NA>
11101 chr1.109249795.109250386 (GCT)n Other Simple_repeat
11102 chr1.109253945.109254915 <NA> <NA> <NA>
11103 chr1.109258326.109259360 MIR SINE SINE
11104 chr1.109263437.109264147 <NA> <NA> <NA>
11105 chr1.109274953.109276202 (TCCTC)n Other Simple_repeat
11106 chr1.109277340.109277791 MIR SINE SINE
11107 chr1.109282829.109283668 <NA> <NA> <NA>
11108 chr1.109291071.109291592 MLT1H LTR LTR
11109 chr1.109291071.109291592 AluSz SINE SINE
11110 chr1.109298646.109299747 <NA> <NA> <NA>
11111 chr1.109300744.109301082 <NA> <NA> <NA>
repFamily width TEstatus mrc per_ol
1 Simple_repeat 181 not_TE_peak all_peaks 0.1989010989
2 telo 247 not_TE_peak all_peaks 0.2515274949
3 <NA> NA not_TE_peak all_peaks NA
4 <NA> NA not_TE_peak all_peaks NA
5 <NA> NA not_TE_peak all_peaks NA
6 <NA> NA not_TE_peak all_peaks NA
7 <NA> NA not_TE_peak all_peaks NA
8 Alu 71 not_TE_peak all_peaks 0.3776595745
9 <NA> NA not_TE_peak all_peaks NA
10 Low_complexity 88 TE_peak all_peaks 1.0000000000
11 <NA> NA not_TE_peak all_peaks NA
12 <NA> NA not_TE_peak all_peaks NA
13 ERVL-MaLR 170 TE_peak all_peaks 1.0000000000
14 MIR 72 TE_peak all_peaks 0.6792452830
15 <NA> NA not_TE_peak all_peaks NA
16 <NA> NA not_TE_peak all_peaks NA
17 <NA> NA not_TE_peak all_peaks NA
18 <NA> NA not_TE_peak all_peaks NA
19 <NA> NA not_TE_peak all_peaks NA
20 Simple_repeat 39 TE_peak all_peaks 1.0000000000
21 Simple_repeat 20 TE_peak all_peaks 1.0000000000
22 Simple_repeat 43 TE_peak all_peaks 1.0000000000
23 <NA> NA not_TE_peak all_peaks NA
24 <NA> NA not_TE_peak all_peaks NA
25 <NA> NA not_TE_peak all_peaks NA
26 Simple_repeat 50 TE_peak all_peaks 1.0000000000
27 <NA> NA not_TE_peak all_peaks NA
28 Simple_repeat 48 TE_peak all_peaks 1.0000000000
29 Simple_repeat 50 TE_peak all_peaks 0.8064516129
30 <NA> NA not_TE_peak all_peaks NA
31 Simple_repeat 28 TE_peak all_peaks 1.0000000000
32 Simple_repeat 33 TE_peak all_peaks 0.7857142857
33 <NA> NA not_TE_peak all_peaks NA
34 <NA> NA not_TE_peak all_peaks NA
35 Simple_repeat 42 TE_peak all_peaks 1.0000000000
36 Low_complexity 34 TE_peak all_peaks 1.0000000000
37 Low_complexity 42 TE_peak all_peaks 1.0000000000
38 Simple_repeat 45 TE_peak all_peaks 1.0000000000
39 <NA> NA not_TE_peak all_peaks NA
40 Simple_repeat 12 not_TE_peak all_peaks 0.1791044776
41 ERVL-MaLR 161 TE_peak all_peaks 1.0000000000
42 Alu 65 not_TE_peak all_peaks 0.2090032154
43 Alu 38 not_TE_peak all_peaks 0.2878787879
44 Low_complexity 41 TE_peak all_peaks 1.0000000000
45 Low_complexity 50 TE_peak all_peaks 1.0000000000
46 Simple_repeat 7 not_TE_peak all_peaks 0.1666666667
47 Simple_repeat 103 TE_peak all_peaks 1.0000000000
48 Simple_repeat 42 TE_peak all_peaks 1.0000000000
49 Low_complexity 39 TE_peak all_peaks 1.0000000000
50 <NA> NA not_TE_peak all_peaks NA
51 Simple_repeat 42 TE_peak all_peaks 1.0000000000
52 Simple_repeat 37 TE_peak all_peaks 1.0000000000
53 Simple_repeat 17 not_TE_peak all_peaks 0.0480225989
54 Low_complexity 100 not_TE_peak all_peaks 0.3676470588
55 <NA> NA not_TE_peak all_peaks NA
56 <NA> NA not_TE_peak all_peaks NA
57 Simple_repeat 39 TE_peak all_peaks 1.0000000000
58 Low_complexity 4 not_TE_peak all_peaks 0.1111111111
59 Simple_repeat 50 TE_peak all_peaks 1.0000000000
60 Simple_repeat 51 TE_peak all_peaks 1.0000000000
61 <NA> NA not_TE_peak all_peaks NA
62 Low_complexity 32 TE_peak all_peaks 1.0000000000
63 Simple_repeat 30 TE_peak all_peaks 1.0000000000
64 <NA> NA not_TE_peak all_peaks NA
65 Simple_repeat 44 TE_peak all_peaks 1.0000000000
66 Low_complexity 43 TE_peak all_peaks 1.0000000000
67 Simple_repeat 42 TE_peak all_peaks 1.0000000000
68 <NA> NA not_TE_peak all_peaks NA
69 <NA> NA not_TE_peak all_peaks NA
70 Simple_repeat 7 not_TE_peak all_peaks 0.0843373494
71 Simple_repeat 65 TE_peak all_peaks 1.0000000000
72 <NA> NA not_TE_peak all_peaks NA
73 <NA> NA not_TE_peak all_peaks NA
74 <NA> NA not_TE_peak all_peaks NA
75 Simple_repeat 38 TE_peak all_peaks 1.0000000000
76 MIR 177 TE_peak all_peaks 1.0000000000
77 Simple_repeat 34 TE_peak all_peaks 1.0000000000
78 Simple_repeat 39 TE_peak all_peaks 1.0000000000
79 L2 116 TE_peak all_peaks 1.0000000000
80 ERVL 53 not_TE_peak all_peaks 0.1464088398
81 Alu 83 not_TE_peak all_peaks 0.3108614232
82 ERVL 207 TE_peak all_peaks 1.0000000000
83 Simple_repeat 85 TE_peak all_peaks 1.0000000000
84 Alu 48 not_TE_peak all_peaks 0.1720430108
85 Simple_repeat 65 TE_peak all_peaks 1.0000000000
86 Simple_repeat 34 TE_peak all_peaks 1.0000000000
87 Low_complexity 39 TE_peak all_peaks 1.0000000000
88 Low_complexity 37 TE_peak all_peaks 1.0000000000
89 MIR 132 TE_peak all_peaks 1.0000000000
90 <NA> NA not_TE_peak all_peaks NA
91 <NA> NA not_TE_peak all_peaks NA
92 <NA> NA not_TE_peak all_peaks NA
93 <NA> NA not_TE_peak all_peaks NA
94 <NA> NA not_TE_peak all_peaks NA
95 Low_complexity 60 TE_peak all_peaks 1.0000000000
96 Simple_repeat 68 TE_peak all_peaks 1.0000000000
97 Simple_repeat 64 TE_peak all_peaks 1.0000000000
98 Simple_repeat 35 TE_peak all_peaks 1.0000000000
99 Simple_repeat 25 TE_peak all_peaks 1.0000000000
100 Simple_repeat 58 TE_peak all_peaks 1.0000000000
101 Alu 31 not_TE_peak all_peaks 0.1016393443
102 L1 196 TE_peak all_peaks 1.0000000000
103 Alu 187 TE_peak all_peaks 0.6538461538
104 <NA> NA not_TE_peak all_peaks NA
105 <NA> NA not_TE_peak all_peaks NA
106 Simple_repeat 42 TE_peak all_peaks 1.0000000000
107 Simple_repeat 62 TE_peak all_peaks 1.0000000000
108 Simple_repeat 42 TE_peak all_peaks 1.0000000000
109 Low_complexity 47 TE_peak all_peaks 1.0000000000
110 Simple_repeat 361 TE_peak all_peaks 0.9328165375
111 <NA> NA not_TE_peak all_peaks NA
112 hAT-Charlie 77 TE_peak all_peaks 0.7264150943
113 Simple_repeat 61 TE_peak all_peaks 1.0000000000
114 Low_complexity 105 TE_peak all_peaks 1.0000000000
115 Simple_repeat 62 TE_peak all_peaks 1.0000000000
116 Low_complexity 46 TE_peak all_peaks 1.0000000000
117 Low_complexity 67 TE_peak all_peaks 1.0000000000
118 Alu 81 TE_peak all_peaks 1.0000000000
119 Alu 154 TE_peak all_peaks 1.0000000000
120 Alu 76 not_TE_peak all_peaks 0.2648083624
121 <NA> NA not_TE_peak all_peaks NA
122 Simple_repeat 45 TE_peak all_peaks 1.0000000000
123 Low_complexity 53 TE_peak all_peaks 1.0000000000
124 <NA> NA not_TE_peak all_peaks NA
125 <NA> NA not_TE_peak all_peaks NA
126 Simple_repeat 90 TE_peak all_peaks 1.0000000000
127 Low_complexity 34 TE_peak all_peaks 1.0000000000
128 Simple_repeat 37 TE_peak all_peaks 1.0000000000
129 <NA> NA not_TE_peak all_peaks NA
130 <NA> NA not_TE_peak all_peaks NA
131 ERV1 287 TE_peak all_peaks 0.7592592593
132 ERV1 139 TE_peak all_peaks 1.0000000000
133 Simple_repeat 47 TE_peak all_peaks 1.0000000000
134 Simple_repeat 24 TE_peak all_peaks 1.0000000000
135 <NA> NA not_TE_peak all_peaks NA
136 <NA> NA not_TE_peak all_peaks NA
137 <NA> NA not_TE_peak all_peaks NA
138 Simple_repeat 25 TE_peak all_peaks 1.0000000000
139 ERVK 763 TE_peak all_peaks 0.7691532258
140 Simple_repeat 24 TE_peak all_peaks 1.0000000000
141 <NA> NA not_TE_peak all_peaks NA
142 <NA> NA not_TE_peak all_peaks NA
143 L2 144 TE_peak all_peaks 1.0000000000
144 <NA> NA not_TE_peak all_peaks NA
145 <NA> NA not_TE_peak all_peaks NA
146 Simple_repeat 50 TE_peak all_peaks 1.0000000000
147 Simple_repeat 34 TE_peak all_peaks 1.0000000000
148 Simple_repeat 63 TE_peak all_peaks 1.0000000000
149 Simple_repeat 31 TE_peak all_peaks 0.5961538462
150 <NA> NA not_TE_peak all_peaks NA
151 Simple_repeat 45 TE_peak all_peaks 1.0000000000
152 Simple_repeat 77 TE_peak all_peaks 1.0000000000
153 L2 96 TE_peak all_peaks 0.6956521739
154 Simple_repeat 40 TE_peak all_peaks 1.0000000000
155 Simple_repeat 80 TE_peak all_peaks 1.0000000000
156 ERV1 268 TE_peak all_peaks 0.5775862069
157 Alu 66 not_TE_peak all_peaks 0.2129032258
158 Low_complexity 43 TE_peak all_peaks 1.0000000000
159 Simple_repeat 55 TE_peak all_peaks 1.0000000000
160 Low_complexity 24 TE_peak all_peaks 0.8275862069
161 <NA> NA not_TE_peak all_peaks NA
162 Simple_repeat 20 not_TE_peak all_peaks 0.2941176471
163 Simple_repeat 50 TE_peak all_peaks 1.0000000000
164 <NA> NA not_TE_peak all_peaks NA
165 Simple_repeat 32 TE_peak all_peaks 1.0000000000
166 Simple_repeat 49 TE_peak all_peaks 1.0000000000
167 <NA> NA not_TE_peak all_peaks NA
168 Alu 63 not_TE_peak all_peaks 0.1974921630
169 Simple_repeat 47 TE_peak all_peaks 1.0000000000
170 <NA> NA not_TE_peak all_peaks NA
171 Simple_repeat 39 TE_peak all_peaks 0.8297872340
172 Simple_repeat 20 TE_peak all_peaks 1.0000000000
173 Alu 1 not_TE_peak all_peaks 0.0064102564
174 Low_complexity 45 TE_peak all_peaks 1.0000000000
175 <NA> NA not_TE_peak all_peaks NA
176 L1 101 TE_peak all_peaks 0.8347107438
177 L1 428 not_TE_peak all_peaks 0.3770925110
178 <NA> NA not_TE_peak all_peaks NA
179 <NA> NA not_TE_peak all_peaks NA
180 TcMar-Tigger 665 TE_peak all_peaks 0.5371567044
181 Alu 94 not_TE_peak all_peaks 0.3230240550
182 Alu 171 TE_peak all_peaks 1.0000000000
183 L2 217 TE_peak all_peaks 0.8577075099
184 hAT-Charlie 344 TE_peak all_peaks 0.9828571429
185 Alu 301 TE_peak all_peaks 1.0000000000
186 hAT-Charlie 84 TE_peak all_peaks 1.0000000000
187 Alu 96 TE_peak all_peaks 1.0000000000
188 hAT-Charlie 70 TE_peak all_peaks 1.0000000000
189 Alu 61 not_TE_peak all_peaks 0.4295774648
190 ERVL-MaLR 288 TE_peak all_peaks 0.7422680412
191 Alu 120 TE_peak all_peaks 0.9917355372
192 Low_complexity 62 TE_peak all_peaks 1.0000000000
193 Simple_repeat 64 TE_peak all_peaks 1.0000000000
194 Alu 100 TE_peak all_peaks 1.0000000000
195 MIR 124 TE_peak all_peaks 1.0000000000
196 <NA> NA not_TE_peak all_peaks NA
197 Simple_repeat 51 TE_peak all_peaks 1.0000000000
198 Simple_repeat 85 TE_peak all_peaks 1.0000000000
199 Simple_repeat 78 TE_peak all_peaks 1.0000000000
200 Low_complexity 35 TE_peak all_peaks 1.0000000000
201 Low_complexity 98 TE_peak all_peaks 1.0000000000
202 Alu 103 TE_peak all_peaks 0.7152777778
203 Alu 304 TE_peak all_peaks 1.0000000000
204 Alu 64 not_TE_peak all_peaks 0.2191780822
205 Alu 14 not_TE_peak all_peaks 0.0921052632
206 Alu 14 TE_peak all_peaks 1.0000000000
207 L1 90 TE_peak all_peaks 1.0000000000
208 L2 78 TE_peak all_peaks 1.0000000000
209 Low_complexity 136 TE_peak all_peaks 1.0000000000
210 Alu 61 not_TE_peak all_peaks 0.2046979866
211 Simple_repeat 52 TE_peak all_peaks 1.0000000000
212 Low_complexity 4 not_TE_peak all_peaks 0.0952380952
213 <NA> NA not_TE_peak all_peaks NA
214 ERVL-MaLR 258 TE_peak all_peaks 0.6598465473
215 Simple_repeat 52 TE_peak all_peaks 1.0000000000
216 L1 135 not_TE_peak all_peaks 0.1737451737
217 <NA> NA not_TE_peak all_peaks NA
218 <NA> NA not_TE_peak all_peaks NA
219 Simple_repeat 35 TE_peak all_peaks 1.0000000000
220 ERVL 200 TE_peak all_peaks 0.8163265306
221 ERVL 86 TE_peak all_peaks 1.0000000000
222 ERVL 317 TE_peak all_peaks 1.0000000000
223 Low_complexity 91 TE_peak all_peaks 1.0000000000
224 hAT-Charlie 47 TE_peak all_peaks 0.5662650602
225 Low_complexity 47 TE_peak all_peaks 1.0000000000
226 <NA> NA not_TE_peak all_peaks NA
227 <NA> NA not_TE_peak all_peaks NA
228 hAT-Charlie 62 TE_peak all_peaks 1.0000000000
229 <NA> NA not_TE_peak all_peaks NA
230 L2 36 not_TE_peak all_peaks 0.4444444444
231 <NA> NA not_TE_peak all_peaks NA
232 <NA> NA not_TE_peak all_peaks NA
233 <NA> NA not_TE_peak all_peaks NA
234 ERVL-MaLR 92 not_TE_peak all_peaks 0.4279069767
235 ERVL 424 TE_peak all_peaks 0.5714285714
236 L1 33 not_TE_peak all_peaks 0.1320000000
237 Alu 35 not_TE_peak all_peaks 0.1268115942
238 ERVL-MaLR 188 TE_peak all_peaks 1.0000000000
239 ERVL-MaLR 105 TE_peak all_peaks 1.0000000000
240 ERVL-MaLR 168 TE_peak all_peaks 1.0000000000
241 <NA> NA not_TE_peak all_peaks NA
242 <NA> NA not_TE_peak all_peaks NA
243 L1 192 TE_peak all_peaks 0.8458149780
244 Simple_repeat 40 TE_peak all_peaks 1.0000000000
245 <NA> NA not_TE_peak all_peaks NA
246 Simple_repeat 62 TE_peak all_peaks 1.0000000000
247 hAT-Charlie 93 TE_peak all_peaks 1.0000000000
248 <NA> NA not_TE_peak all_peaks NA
249 Simple_repeat 62 TE_peak all_peaks 1.0000000000
250 Simple_repeat 30 TE_peak all_peaks 1.0000000000
251 ERVL-MaLR 100 TE_peak all_peaks 0.5847953216
252 <NA> NA not_TE_peak all_peaks NA
253 <NA> NA not_TE_peak all_peaks NA
254 <NA> NA not_TE_peak all_peaks NA
255 Simple_repeat 63 TE_peak all_peaks 1.0000000000
256 <NA> NA not_TE_peak all_peaks NA
257 Simple_repeat 69 TE_peak all_peaks 0.8214285714
258 Simple_repeat 30 TE_peak all_peaks 1.0000000000
259 <NA> NA not_TE_peak all_peaks NA
260 <NA> NA not_TE_peak all_peaks NA
261 L1 240 TE_peak all_peaks 0.7476635514
262 <NA> NA not_TE_peak all_peaks NA
263 Alu 174 TE_peak all_peaks 0.5612903226
264 <NA> NA not_TE_peak all_peaks NA
265 Simple_repeat 42 TE_peak all_peaks 1.0000000000
266 ERVL-MaLR 33 not_TE_peak all_peaks 0.2200000000
267 Low_complexity 73 TE_peak all_peaks 1.0000000000
268 Alu 136 TE_peak all_peaks 1.0000000000
269 <NA> NA not_TE_peak all_peaks NA
270 <NA> NA not_TE_peak all_peaks NA
271 <NA> NA not_TE_peak all_peaks NA
272 Simple_repeat 29 TE_peak all_peaks 1.0000000000
273 <NA> NA not_TE_peak all_peaks NA
274 Simple_repeat 37 TE_peak all_peaks 1.0000000000
275 <NA> NA not_TE_peak all_peaks NA
276 <NA> NA not_TE_peak all_peaks NA
277 <NA> NA not_TE_peak all_peaks NA
278 <NA> NA not_TE_peak all_peaks NA
279 L1 231 TE_peak all_peaks 1.0000000000
280 L1 53 TE_peak all_peaks 1.0000000000
281 <NA> NA not_TE_peak all_peaks NA
282 MIR 2 not_TE_peak all_peaks 0.0151515152
283 <NA> NA not_TE_peak all_peaks NA
284 Low_complexity 41 TE_peak all_peaks 1.0000000000
285 Simple_repeat 56 TE_peak all_peaks 1.0000000000
286 Low_complexity 186 TE_peak all_peaks 1.0000000000
287 Simple_repeat 30 TE_peak all_peaks 1.0000000000
288 Simple_repeat 127 TE_peak all_peaks 1.0000000000
289 Low_complexity 47 TE_peak all_peaks 1.0000000000
290 Simple_repeat 186 TE_peak all_peaks 0.9393939394
291 <NA> NA not_TE_peak all_peaks NA
292 Simple_repeat 16 TE_peak all_peaks 0.6400000000
293 MIR 43 TE_peak all_peaks 1.0000000000
294 <NA> NA not_TE_peak all_peaks NA
295 <NA> NA not_TE_peak all_peaks NA
296 <NA> NA not_TE_peak all_peaks NA
297 Low_complexity 30 TE_peak all_peaks 1.0000000000
298 Simple_repeat 33 TE_peak all_peaks 1.0000000000
299 Simple_repeat 25 TE_peak all_peaks 1.0000000000
300 Simple_repeat 23 TE_peak all_peaks 1.0000000000
301 Simple_repeat 19 TE_peak all_peaks 1.0000000000
302 Simple_repeat 36 TE_peak all_peaks 1.0000000000
303 <NA> NA not_TE_peak all_peaks NA
304 <NA> NA not_TE_peak all_peaks NA
305 <NA> NA not_TE_peak all_peaks NA
306 <NA> NA not_TE_peak all_peaks NA
307 Simple_repeat 241 not_TE_peak all_peaks 0.3023839398
308 <NA> NA not_TE_peak all_peaks NA
309 <NA> NA not_TE_peak all_peaks NA
310 MIR 160 TE_peak all_peaks 1.0000000000
311 Simple_repeat 98 TE_peak all_peaks 0.8235294118
312 <NA> NA not_TE_peak all_peaks NA
313 <NA> NA not_TE_peak all_peaks NA
314 <NA> NA not_TE_peak all_peaks NA
315 <NA> NA not_TE_peak all_peaks NA
316 <NA> NA not_TE_peak all_peaks NA
317 <NA> NA not_TE_peak all_peaks NA
318 <NA> NA not_TE_peak all_peaks NA
319 <NA> NA not_TE_peak all_peaks NA
320 <NA> NA not_TE_peak all_peaks NA
321 <NA> NA not_TE_peak all_peaks NA
322 <NA> NA not_TE_peak all_peaks NA
323 Simple_repeat 54 TE_peak all_peaks 1.0000000000
324 Simple_repeat 28 TE_peak all_peaks 1.0000000000
325 <NA> NA not_TE_peak all_peaks NA
326 hAT-Charlie 123 TE_peak all_peaks 1.0000000000
327 <NA> NA not_TE_peak all_peaks NA
328 <NA> NA not_TE_peak all_peaks NA
329 <NA> NA not_TE_peak all_peaks NA
330 Simple_repeat 42 TE_peak all_peaks 1.0000000000
331 <NA> NA not_TE_peak all_peaks NA
332 <NA> NA not_TE_peak all_peaks NA
333 L2 89 TE_peak all_peaks 1.0000000000
334 <NA> NA not_TE_peak all_peaks NA
335 <NA> NA not_TE_peak all_peaks NA
336 MIR 62 TE_peak all_peaks 1.0000000000
337 <NA> NA not_TE_peak all_peaks NA
338 <NA> NA not_TE_peak all_peaks NA
339 <NA> NA not_TE_peak all_peaks NA
340 <NA> NA not_TE_peak all_peaks NA
341 Alu 37 not_TE_peak all_peaks 0.1258503401
342 <NA> NA not_TE_peak all_peaks NA
343 MIR 110 TE_peak all_peaks 1.0000000000
344 MIR 102 TE_peak all_peaks 1.0000000000
345 <NA> NA not_TE_peak all_peaks NA
346 Low_complexity 33 TE_peak all_peaks 1.0000000000
347 Low_complexity 20 not_TE_peak all_peaks 0.1980198020
348 <NA> NA not_TE_peak all_peaks NA
349 Simple_repeat 42 TE_peak all_peaks 1.0000000000
350 Simple_repeat 38 TE_peak all_peaks 1.0000000000
351 Low_complexity 40 TE_peak all_peaks 1.0000000000
352 <NA> NA not_TE_peak all_peaks NA
353 <NA> NA not_TE_peak all_peaks NA
354 Low_complexity 39 TE_peak all_peaks 1.0000000000
355 Simple_repeat 41 TE_peak all_peaks 1.0000000000
356 Simple_repeat 31 TE_peak all_peaks 1.0000000000
357 Simple_repeat 38 TE_peak all_peaks 1.0000000000
358 Simple_repeat 86 TE_peak all_peaks 0.9885057471
359 <NA> NA not_TE_peak all_peaks NA
360 <NA> NA not_TE_peak all_peaks NA
361 <NA> NA not_TE_peak all_peaks NA
362 <NA> NA not_TE_peak all_peaks NA
363 <NA> NA not_TE_peak all_peaks NA
364 Simple_repeat 26 TE_peak all_peaks 1.0000000000
365 ERVL 688 TE_peak all_peaks 1.0000000000
366 <NA> NA not_TE_peak all_peaks NA
367 Simple_repeat 78 TE_peak all_peaks 1.0000000000
368 Simple_repeat 49 TE_peak all_peaks 1.0000000000
369 Simple_repeat 132 TE_peak all_peaks 1.0000000000
370 Simple_repeat 39 TE_peak all_peaks 1.0000000000
371 L2 48 TE_peak all_peaks 1.0000000000
372 hAT-Tip100 167 TE_peak all_peaks 1.0000000000
373 <NA> NA not_TE_peak all_peaks NA
374 <NA> NA not_TE_peak all_peaks NA
375 <NA> NA not_TE_peak all_peaks NA
376 <NA> NA not_TE_peak all_peaks NA
377 <NA> NA not_TE_peak all_peaks NA
378 <NA> NA not_TE_peak all_peaks NA
379 <NA> NA not_TE_peak all_peaks NA
380 <NA> NA not_TE_peak all_peaks NA
381 MIR 22 not_TE_peak all_peaks 0.0936170213
382 Simple_repeat 40 TE_peak all_peaks 1.0000000000
383 <NA> NA not_TE_peak all_peaks NA
384 <NA> NA not_TE_peak all_peaks NA
385 <NA> NA not_TE_peak all_peaks NA
386 L2 228 TE_peak all_peaks 1.0000000000
387 <NA> NA not_TE_peak all_peaks NA
388 <NA> NA not_TE_peak all_peaks NA
389 Alu 90 not_TE_peak all_peaks 0.3020134228
390 <NA> NA not_TE_peak all_peaks NA
391 Simple_repeat 54 TE_peak all_peaks 1.0000000000
392 <NA> NA not_TE_peak all_peaks NA
393 Simple_repeat 40 TE_peak all_peaks 1.0000000000
394 MIR 164 TE_peak all_peaks 1.0000000000
395 <NA> NA not_TE_peak all_peaks NA
396 <NA> NA not_TE_peak all_peaks NA
397 Simple_repeat 22 TE_peak all_peaks 1.0000000000
398 ERV1 229 not_TE_peak all_peaks 0.3154269972
399 ERVK 173 not_TE_peak all_peaks 0.3626834382
400 ERVK 372 not_TE_peak all_peaks 0.2634560907
401 MIR 28 TE_peak all_peaks 1.0000000000
402 MIR 42 TE_peak all_peaks 1.0000000000
403 L2 119 TE_peak all_peaks 1.0000000000
404 Simple_repeat 80 TE_peak all_peaks 1.0000000000
405 Simple_repeat 18 TE_peak all_peaks 1.0000000000
406 MIR 119 TE_peak all_peaks 0.5891089109
407 Simple_repeat 45 TE_peak all_peaks 1.0000000000
408 Simple_repeat 14 TE_peak all_peaks 1.0000000000
409 L1 274 TE_peak all_peaks 0.5036764706
410 ERVL 335 not_TE_peak all_peaks 0.4731638418
411 L2 455 TE_peak all_peaks 0.5083798883
412 <NA> NA not_TE_peak all_peaks NA
413 <NA> NA not_TE_peak all_peaks NA
414 MIR 166 TE_peak all_peaks 0.9325842697
415 Low_complexity 65 TE_peak all_peaks 1.0000000000
416 <NA> NA not_TE_peak all_peaks NA
417 LTR 104 TE_peak all_peaks 1.0000000000
418 <NA> NA not_TE_peak all_peaks NA
419 TcMar-Tigger 188 TE_peak all_peaks 1.0000000000
420 <NA> NA not_TE_peak all_peaks NA
421 ERV1 468 TE_peak all_peaks 0.9052224371
422 Simple_repeat 78 TE_peak all_peaks 1.0000000000
423 L2 271 TE_peak all_peaks 0.9783393502
424 L1 9 not_TE_peak all_peaks 0.0159010601
425 <NA> NA not_TE_peak all_peaks NA
426 Alu 70 not_TE_peak all_peaks 0.2536231884
427 Simple_repeat 192 TE_peak all_peaks 1.0000000000
428 ERV1 82 not_TE_peak all_peaks 0.2129870130
429 MIR 91 TE_peak all_peaks 1.0000000000
430 ERVL-MaLR 97 not_TE_peak all_peaks 0.3099041534
431 RTE-X 207 TE_peak all_peaks 0.9039301310
432 <NA> NA not_TE_peak all_peaks NA
433 ERVL-MaLR 308 TE_peak all_peaks 0.7530562347
434 <NA> NA not_TE_peak all_peaks NA
435 <NA> NA not_TE_peak all_peaks NA
436 L2 116 TE_peak all_peaks 1.0000000000
437 <NA> NA not_TE_peak all_peaks NA
438 Simple_repeat 30 TE_peak all_peaks 1.0000000000
439 L2 185 TE_peak all_peaks 0.7341269841
440 L2 127 TE_peak all_peaks 1.0000000000
441 MIR 99 TE_peak all_peaks 0.5689655172
442 MIR 14 not_TE_peak all_peaks 0.1129032258
443 ERVL-MaLR 58 not_TE_peak all_peaks 0.1576086957
444 <NA> NA not_TE_peak all_peaks NA
445 <NA> NA not_TE_peak all_peaks NA
446 <NA> NA not_TE_peak all_peaks NA
447 L2 110 TE_peak all_peaks 1.0000000000
448 ERVL 406 TE_peak all_peaks 0.7602996255
449 MIR 152 TE_peak all_peaks 1.0000000000
450 <NA> NA not_TE_peak all_peaks NA
451 Simple_repeat 16 not_TE_peak all_peaks 0.3555555556
452 <NA> NA not_TE_peak all_peaks NA
453 Simple_repeat 92 TE_peak all_peaks 0.5786163522
454 <NA> NA not_TE_peak all_peaks NA
455 <NA> NA not_TE_peak all_peaks NA
456 MIR 39 not_TE_peak all_peaks 0.1772727273
457 ERVL-MaLR 55 not_TE_peak all_peaks 0.3985507246
458 <NA> NA not_TE_peak all_peaks NA
459 <NA> NA not_TE_peak all_peaks NA
460 <NA> NA not_TE_peak all_peaks NA
461 L2 165 TE_peak all_peaks 0.6903765690
462 L1 180 not_TE_peak all_peaks 0.2531645570
463 ERVL 291 TE_peak all_peaks 0.6126315789
464 <NA> NA not_TE_peak all_peaks NA
465 MIR 66 TE_peak all_peaks 1.0000000000
466 <NA> NA not_TE_peak all_peaks NA
467 Simple_repeat 12 not_TE_peak all_peaks 0.0140186916
468 L2 210 TE_peak all_peaks 0.6122448980
469 <NA> NA not_TE_peak all_peaks NA
470 <NA> NA not_TE_peak all_peaks NA
471 L2 48 not_TE_peak all_peaks 0.0412371134
472 Simple_repeat 40 TE_peak all_peaks 1.0000000000
473 Alu 60 not_TE_peak all_peaks 0.1980198020
474 hAT 152 TE_peak all_peaks 1.0000000000
475 L2 124 not_TE_peak all_peaks 0.3076923077
476 <NA> NA not_TE_peak all_peaks NA
477 <NA> NA not_TE_peak all_peaks NA
478 Alu 141 TE_peak all_peaks 0.5108695652
479 MIR 221 TE_peak all_peaks 1.0000000000
480 Simple_repeat 51 TE_peak all_peaks 0.6219512195
481 hAT-Charlie 85 TE_peak all_peaks 1.0000000000
482 <NA> NA not_TE_peak all_peaks NA
483 Low_complexity 18 not_TE_peak all_peaks 0.3103448276
484 <NA> NA not_TE_peak all_peaks NA
485 Low_complexity 59 TE_peak all_peaks 1.0000000000
486 L2 56 TE_peak all_peaks 0.6588235294
487 MIR 83 TE_peak all_peaks 1.0000000000
488 Alu 274 TE_peak all_peaks 1.0000000000
489 MIR 15 not_TE_peak all_peaks 0.1485148515
490 MIR 123 TE_peak all_peaks 1.0000000000
491 <NA> NA not_TE_peak all_peaks NA
492 L2 15 not_TE_peak all_peaks 0.2727272727
493 <NA> NA not_TE_peak all_peaks NA
494 <NA> NA not_TE_peak all_peaks NA
495 <NA> NA not_TE_peak all_peaks NA
496 Simple_repeat 8 not_TE_peak all_peaks 0.1666666667
497 Simple_repeat 25 TE_peak all_peaks 1.0000000000
498 <NA> NA not_TE_peak all_peaks NA
499 <NA> NA not_TE_peak all_peaks NA
500 <NA> NA not_TE_peak all_peaks NA
501 MIR 40 not_TE_peak all_peaks 0.3418803419
502 Simple_repeat 18 not_TE_peak all_peaks 0.3600000000
503 Simple_repeat 97 TE_peak all_peaks 0.9700000000
504 Simple_repeat 143 TE_peak all_peaks 1.0000000000
505 L2 54 TE_peak all_peaks 1.0000000000
506 Simple_repeat 60 TE_peak all_peaks 1.0000000000
507 <NA> NA not_TE_peak all_peaks NA
508 <NA> NA not_TE_peak all_peaks NA
509 <NA> NA not_TE_peak all_peaks NA
510 ERVL-MaLR 33 not_TE_peak all_peaks 0.1447368421
511 ERVL-MaLR 165 TE_peak all_peaks 1.0000000000
512 Alu 24 not_TE_peak all_peaks 0.0776699029
513 <NA> NA not_TE_peak all_peaks NA
514 MIR 106 TE_peak all_peaks 1.0000000000
515 Simple_repeat 11 not_TE_peak all_peaks 0.2200000000
516 hAT-Charlie 106 TE_peak all_peaks 1.0000000000
517 Simple_repeat 33 TE_peak all_peaks 0.6346153846
518 Simple_repeat 38 TE_peak all_peaks 1.0000000000
519 L2 191 TE_peak all_peaks 0.6797153025
520 Simple_repeat 57 TE_peak all_peaks 1.0000000000
521 ERVK 269 not_TE_peak all_peaks 0.2742099898
522 ERV1 409 not_TE_peak all_peaks 0.3917624521
523 L1 134 TE_peak all_peaks 0.5403225806
524 Low_complexity 70 TE_peak all_peaks 1.0000000000
525 Simple_repeat 34 TE_peak all_peaks 1.0000000000
526 Simple_repeat 53 TE_peak all_peaks 1.0000000000
527 Simple_repeat 8 TE_peak all_peaks 1.0000000000
528 Alu 40 not_TE_peak all_peaks 0.1418439716
529 Simple_repeat 51 TE_peak all_peaks 1.0000000000
530 Alu 89 not_TE_peak all_peaks 0.3189964158
531 Simple_repeat 61 TE_peak all_peaks 1.0000000000
532 Alu 118 not_TE_peak all_peaks 0.4097222222
533 Low_complexity 18 not_TE_peak all_peaks 0.2686567164
534 MIR 105 TE_peak all_peaks 1.0000000000
535 <NA> NA not_TE_peak all_peaks NA
536 <NA> NA not_TE_peak all_peaks NA
537 MIR 142 TE_peak all_peaks 1.0000000000
538 MIR 31 not_TE_peak all_peaks 0.4305555556
539 Low_complexity 120 TE_peak all_peaks 1.0000000000
540 Simple_repeat 40 TE_peak all_peaks 1.0000000000
541 Simple_repeat 85 TE_peak all_peaks 1.0000000000
542 Simple_repeat 78 TE_peak all_peaks 1.0000000000
543 MIR 65 TE_peak all_peaks 1.0000000000
544 <NA> NA not_TE_peak all_peaks NA
545 <NA> NA not_TE_peak all_peaks NA
546 Simple_repeat 19 TE_peak all_peaks 1.0000000000
547 MIR 70 TE_peak all_peaks 1.0000000000
548 <NA> NA not_TE_peak all_peaks NA
549 CR1 121 not_TE_peak all_peaks 0.4726562500
550 L1 56 not_TE_peak all_peaks 0.2267206478
551 Alu 112 TE_peak all_peaks 0.8484848485
552 L1 192 TE_peak all_peaks 1.0000000000
553 Alu 124 TE_peak all_peaks 1.0000000000
554 L1 77 TE_peak all_peaks 0.7475728155
555 <NA> NA not_TE_peak all_peaks NA
556 hAT-Ac 91 TE_peak all_peaks 1.0000000000
557 Alu 107 TE_peak all_peaks 0.8699186992
558 Alu 75 not_TE_peak all_peaks 0.2459016393
559 <NA> NA not_TE_peak all_peaks NA
560 Alu 228 TE_peak all_peaks 0.7378640777
561 Low_complexity 80 TE_peak all_peaks 1.0000000000
562 <NA> NA not_TE_peak all_peaks NA
563 Simple_repeat 52 TE_peak all_peaks 1.0000000000
564 Simple_repeat 56 TE_peak all_peaks 1.0000000000
565 Simple_repeat 100 TE_peak all_peaks 1.0000000000
566 Simple_repeat 52 TE_peak all_peaks 1.0000000000
567 L2 111 TE_peak all_peaks 1.0000000000
568 L1 113 TE_peak all_peaks 1.0000000000
569 Alu 31 not_TE_peak all_peaks 0.1043771044
570 <NA> NA not_TE_peak all_peaks NA
571 hAT-Charlie 104 TE_peak all_peaks 1.0000000000
572 Alu 63 not_TE_peak all_peaks 0.3351063830
573 Alu 242 TE_peak all_peaks 0.7400611621
574 hAT-Blackjack 103 TE_peak all_peaks 1.0000000000
575 ERVL-MaLR 78 TE_peak all_peaks 1.0000000000
576 ERVL-MaLR 37 not_TE_peak all_peaks 0.0840909091
577 <NA> NA not_TE_peak all_peaks NA
578 Alu 188 TE_peak all_peaks 0.6886446886
579 <NA> NA not_TE_peak all_peaks NA
580 hAT-Charlie 50 TE_peak all_peaks 0.9433962264
581 ERVL-MaLR 362 TE_peak all_peaks 1.0000000000
582 CR1 146 TE_peak all_peaks 0.7053140097
583 Alu 70 not_TE_peak all_peaks 0.2348993289
584 <NA> NA not_TE_peak all_peaks NA
585 <NA> NA not_TE_peak all_peaks NA
586 ERVL-MaLR 9 not_TE_peak all_peaks 0.0233766234
587 Simple_repeat 24 TE_peak all_peaks 1.0000000000
588 DNA 102 TE_peak all_peaks 1.0000000000
589 hAT-Charlie 231 TE_peak all_peaks 1.0000000000
590 <NA> NA not_TE_peak all_peaks NA
591 hAT-Ac 35 not_TE_peak all_peaks 0.3211009174
592 Simple_repeat 45 TE_peak all_peaks 1.0000000000
593 <NA> NA not_TE_peak all_peaks NA
594 <NA> NA not_TE_peak all_peaks NA
595 Alu 304 TE_peak all_peaks 1.0000000000
596 <NA> NA not_TE_peak all_peaks NA
597 <NA> NA not_TE_peak all_peaks NA
598 TcMar-Tigger 210 TE_peak all_peaks 1.0000000000
599 Alu 174 TE_peak all_peaks 0.8877551020
600 Alu 46 not_TE_peak all_peaks 0.1735849057
601 L2 119 TE_peak all_peaks 1.0000000000
602 Alu 245 TE_peak all_peaks 0.8085808581
603 L1 295 TE_peak all_peaks 1.0000000000
604 Alu 168 TE_peak all_peaks 0.5384615385
605 Alu 293 TE_peak all_peaks 0.9331210191
606 <NA> NA not_TE_peak all_peaks NA
607 MIR 159 TE_peak all_peaks 1.0000000000
608 Alu 273 TE_peak all_peaks 0.9285714286
609 <NA> NA not_TE_peak all_peaks NA
610 <NA> NA not_TE_peak all_peaks NA
611 MIR 118 TE_peak all_peaks 0.5592417062
612 Alu 140 TE_peak all_peaks 0.7253886010
613 Simple_repeat 32 TE_peak all_peaks 1.0000000000
614 Alu 127 TE_peak all_peaks 1.0000000000
615 <NA> NA not_TE_peak all_peaks NA
616 MIR 144 TE_peak all_peaks 1.0000000000
617 MIR 145 TE_peak all_peaks 1.0000000000
618 MIR 227 TE_peak all_peaks 1.0000000000
619 MIR 108 TE_peak all_peaks 0.5684210526
620 ERVL-MaLR 97 TE_peak all_peaks 1.0000000000
621 Simple_repeat 46 TE_peak all_peaks 1.0000000000
622 Simple_repeat 32 TE_peak all_peaks 1.0000000000
623 <NA> NA not_TE_peak all_peaks NA
624 L1 358 not_TE_peak all_peaks 0.4924346630
625 Alu 78 not_TE_peak all_peaks 0.2671232877
626 Alu 135 TE_peak all_peaks 0.5487804878
627 L2 188 TE_peak all_peaks 1.0000000000
628 <NA> NA not_TE_peak all_peaks NA
629 L2 97 TE_peak all_peaks 1.0000000000
630 MIR 131 TE_peak all_peaks 1.0000000000
631 hAT-Charlie 15 not_TE_peak all_peaks 0.0728155340
632 Alu 65 not_TE_peak all_peaks 0.2166666667
633 <NA> NA not_TE_peak all_peaks NA
634 hAT-Blackjack 109 TE_peak all_peaks 1.0000000000
635 L2 189 TE_peak all_peaks 1.0000000000
636 ERVL 285 not_TE_peak all_peaks 0.4922279793
637 Simple_repeat 457 not_TE_peak all_peaks 0.4696813977
638 <NA> NA not_TE_peak all_peaks NA
639 L1 254 not_TE_peak all_peaks 0.3889739663
640 Alu 52 not_TE_peak all_peaks 0.1768707483
641 <NA> NA not_TE_peak all_peaks NA
642 <NA> NA not_TE_peak all_peaks NA
643 hAT-Charlie 14 not_TE_peak all_peaks 0.0823529412
644 <NA> NA not_TE_peak all_peaks NA
645 <NA> NA not_TE_peak all_peaks NA
646 MIR 40 not_TE_peak all_peaks 0.4347826087
647 <NA> NA not_TE_peak all_peaks NA
648 <NA> NA not_TE_peak all_peaks NA
649 MIR 41 not_TE_peak all_peaks 0.3474576271
650 <NA> NA not_TE_peak all_peaks NA
651 MIR 4 not_TE_peak all_peaks 0.0218579235
652 <NA> NA not_TE_peak all_peaks NA
653 ERVL 167 not_TE_peak all_peaks 0.2992831541
654 <NA> NA not_TE_peak all_peaks NA
655 <NA> NA not_TE_peak all_peaks NA
656 L1 6 not_TE_peak all_peaks 0.0062959077
657 MIR 105 TE_peak all_peaks 1.0000000000
658 MIR 187 TE_peak all_peaks 0.9077669903
659 MIR 102 TE_peak all_peaks 0.5049504950
660 Low_complexity 157 TE_peak all_peaks 0.8820224719
661 <NA> NA not_TE_peak all_peaks NA
662 Simple_repeat 69 TE_peak all_peaks 1.0000000000
663 MIR 154 TE_peak all_peaks 1.0000000000
664 <NA> NA not_TE_peak all_peaks NA
665 <NA> NA not_TE_peak all_peaks NA
666 <NA> NA not_TE_peak all_peaks NA
667 <NA> NA not_TE_peak all_peaks NA
668 <NA> NA not_TE_peak all_peaks NA
669 CR1 66 TE_peak all_peaks 1.0000000000
670 <NA> NA not_TE_peak all_peaks NA
671 <NA> NA not_TE_peak all_peaks NA
672 L1 115 TE_peak all_peaks 1.0000000000
673 hAT-Blackjack 129 TE_peak all_peaks 0.6386138614
674 Alu 22 not_TE_peak all_peaks 0.0766550523
675 hAT-Tip100 10 not_TE_peak all_peaks 0.1176470588
676 L2 189 TE_peak all_peaks 0.5869565217
677 L2 225 TE_peak all_peaks 1.0000000000
678 L2 68 TE_peak all_peaks 1.0000000000
679 Low_complexity 37 TE_peak all_peaks 1.0000000000
680 <NA> NA not_TE_peak all_peaks NA
681 <NA> NA not_TE_peak all_peaks NA
682 <NA> NA not_TE_peak all_peaks NA
683 MIR 96 TE_peak all_peaks 1.0000000000
684 <NA> NA not_TE_peak all_peaks NA
685 <NA> NA not_TE_peak all_peaks NA
686 <NA> NA not_TE_peak all_peaks NA
687 <NA> NA not_TE_peak all_peaks NA
688 <NA> NA not_TE_peak all_peaks NA
689 <NA> NA not_TE_peak all_peaks NA
690 Alu 35 not_TE_peak all_peaks 0.1140065147
691 MIR 17 not_TE_peak all_peaks 0.3148148148
692 <NA> NA not_TE_peak all_peaks NA
693 MIR 173 TE_peak all_peaks 1.0000000000
694 Simple_repeat 39 TE_peak all_peaks 1.0000000000
695 Simple_repeat 19 TE_peak all_peaks 1.0000000000
696 Simple_repeat 4 not_TE_peak all_peaks 0.1290322581
697 <NA> NA not_TE_peak all_peaks NA
698 L2 62 TE_peak all_peaks 1.0000000000
699 <NA> NA not_TE_peak all_peaks NA
700 <NA> NA not_TE_peak all_peaks NA
701 L2 98 TE_peak all_peaks 1.0000000000
702 <NA> NA not_TE_peak all_peaks NA
703 Simple_repeat 28 TE_peak all_peaks 1.0000000000
704 MIR 185 TE_peak all_peaks 1.0000000000
705 <NA> NA not_TE_peak all_peaks NA
706 Simple_repeat 58 TE_peak all_peaks 1.0000000000
707 <NA> NA not_TE_peak all_peaks NA
708 MIR 183 TE_peak all_peaks 0.7991266376
709 Alu 150 not_TE_peak all_peaks 0.4966887417
710 Alu 42 not_TE_peak all_peaks 0.3471074380
711 Alu 126 not_TE_peak all_peaks 0.4375000000
712 <NA> NA not_TE_peak all_peaks NA
713 <NA> NA not_TE_peak all_peaks NA
714 Alu 43 not_TE_peak all_peaks 0.3093525180
715 L2 53 TE_peak all_peaks 0.6625000000
716 Simple_repeat 24 TE_peak all_peaks 1.0000000000
717 <NA> NA not_TE_peak all_peaks NA
718 Alu 95 not_TE_peak all_peaks 0.2968750000
719 Simple_repeat 573 TE_peak all_peaks 0.9378068740
720 <NA> NA not_TE_peak all_peaks NA
721 <NA> NA not_TE_peak all_peaks NA
722 <NA> NA not_TE_peak all_peaks NA
723 <NA> NA not_TE_peak all_peaks NA
724 Simple_repeat 51 TE_peak all_peaks 1.0000000000
725 Simple_repeat 29 TE_peak all_peaks 1.0000000000
726 <NA> NA not_TE_peak all_peaks NA
727 ERVL 363 TE_peak all_peaks 0.8897058824
728 L1 21 not_TE_peak all_peaks 0.1055276382
729 Alu 151 not_TE_peak all_peaks 0.4967105263
730 Simple_repeat 14 TE_peak all_peaks 1.0000000000
731 L2 97 not_TE_peak all_peaks 0.4409090909
732 MIR 68 not_TE_peak all_peaks 0.3253588517
733 hAT-Charlie 56 not_TE_peak all_peaks 0.2196078431
734 Low_complexity 47 TE_peak all_peaks 1.0000000000
735 Alu 105 not_TE_peak all_peaks 0.3476821192
736 Alu 46 not_TE_peak all_peaks 0.1533333333
737 ERV1 188 not_TE_peak all_peaks 0.4619164619
738 Alu 55 TE_peak all_peaks 0.5851063830
739 L2 60 TE_peak all_peaks 1.0000000000
740 Simple_repeat 45 TE_peak all_peaks 1.0000000000
741 <NA> NA not_TE_peak all_peaks NA
742 <NA> NA not_TE_peak all_peaks NA
743 L1 14 not_TE_peak all_peaks 0.0454545455
744 Alu 87 not_TE_peak all_peaks 0.2852459016
745 Alu 159 TE_peak all_peaks 0.5112540193
746 hAT-Ac 53 TE_peak all_peaks 1.0000000000
747 Alu 110 not_TE_peak all_peaks 0.3654485050
748 Alu 30 not_TE_peak all_peaks 0.0983606557
749 RTE-X 277 TE_peak all_peaks 0.6873449132
750 ERVL 106 TE_peak all_peaks 0.5638297872
751 L1 255 TE_peak all_peaks 0.5039525692
752 <NA> NA not_TE_peak all_peaks NA
753 RTE-X 83 TE_peak all_peaks 1.0000000000
754 Low_complexity 45 TE_peak all_peaks 1.0000000000
755 Alu 89 TE_peak all_peaks 0.5204678363
756 Simple_repeat 39 TE_peak all_peaks 1.0000000000
757 Alu 202 TE_peak all_peaks 0.6894197952
758 Alu 47 not_TE_peak all_peaks 0.1566666667
759 L1 129 TE_peak all_peaks 0.7329545455
760 L1 45 not_TE_peak all_peaks 0.4368932039
761 <NA> NA not_TE_peak all_peaks NA
762 Alu 113 not_TE_peak all_peaks 0.4021352313
763 L1 107 TE_peak all_peaks 1.0000000000
764 MIR 209 TE_peak all_peaks 0.8781512605
765 <NA> NA not_TE_peak all_peaks NA
766 CR1 118 TE_peak all_peaks 1.0000000000
767 RTE-BovB 66 TE_peak all_peaks 1.0000000000
768 <NA> NA not_TE_peak all_peaks NA
769 ERVL-MaLR 3 not_TE_peak all_peaks 0.0344827586
770 Low_complexity 55 TE_peak all_peaks 1.0000000000
771 <NA> NA not_TE_peak all_peaks NA
772 Alu 101 TE_peak all_peaks 1.0000000000
773 Alu 201 TE_peak all_peaks 0.7102473498
774 <NA> NA not_TE_peak all_peaks NA
775 Alu 266 TE_peak all_peaks 0.8866666667
776 ERVL 30 not_TE_peak all_peaks 0.1083032491
777 ERVL 414 TE_peak all_peaks 0.9019607843
778 L1 75 TE_peak all_peaks 0.5172413793
779 ERV1 102 TE_peak all_peaks 1.0000000000
780 Alu 10 not_TE_peak all_peaks 0.0362318841
781 MIR 55 TE_peak all_peaks 0.6395348837
782 Simple_repeat 33 TE_peak all_peaks 1.0000000000
783 CR1 46 TE_peak all_peaks 1.0000000000
784 <NA> NA not_TE_peak all_peaks NA
785 <NA> NA not_TE_peak all_peaks NA
786 <NA> NA not_TE_peak all_peaks NA
787 <NA> NA not_TE_peak all_peaks NA
788 <NA> NA not_TE_peak all_peaks NA
789 Simple_repeat 30 TE_peak all_peaks 1.0000000000
790 Simple_repeat 89 TE_peak all_peaks 1.0000000000
791 <NA> NA not_TE_peak all_peaks NA
792 <NA> NA not_TE_peak all_peaks NA
793 <NA> NA not_TE_peak all_peaks NA
794 <NA> NA not_TE_peak all_peaks NA
795 L1 155 TE_peak all_peaks 1.0000000000
796 MIR 235 TE_peak all_peaks 1.0000000000
797 MIR 24 not_TE_peak all_peaks 0.1632653061
798 Alu 23 not_TE_peak all_peaks 0.0746753247
799 ERVL-MaLR 366 TE_peak all_peaks 1.0000000000
800 L1 91 not_TE_peak all_peaks 0.2645348837
801 <NA> NA not_TE_peak all_peaks NA
802 <NA> NA not_TE_peak all_peaks NA
803 <NA> NA not_TE_peak all_peaks NA
804 <NA> NA not_TE_peak all_peaks NA
805 Simple_repeat 36 TE_peak all_peaks 1.0000000000
806 L2 53 TE_peak all_peaks 1.0000000000
807 <NA> NA not_TE_peak all_peaks NA
808 hAT-Charlie 66 TE_peak all_peaks 1.0000000000
809 Alu 205 TE_peak all_peaks 0.7020547945
810 ERVL-MaLR 344 not_TE_peak all_peaks 0.3197026022
811 <NA> NA not_TE_peak all_peaks NA
812 Alu 156 not_TE_peak all_peaks 0.3804878049
813 L2 88 TE_peak all_peaks 1.0000000000
814 L2 102 not_TE_peak all_peaks 0.2512315271
815 Low_complexity 154 TE_peak all_peaks 1.0000000000
816 L2 299 TE_peak all_peaks 0.5516605166
817 CR1 267 TE_peak all_peaks 0.8165137615
818 L1 111 TE_peak all_peaks 0.7207792208
819 <NA> NA not_TE_peak all_peaks NA
820 Alu 148 not_TE_peak all_peaks 0.4916943522
821 Alu 136 TE_peak all_peaks 0.7351351351
822 Alu 209 TE_peak all_peaks 0.7545126354
823 Alu 149 TE_peak all_peaks 0.6286919831
824 TcMar-Tc2 138 TE_peak all_peaks 0.8789808917
825 Alu 175 TE_peak all_peaks 1.0000000000
826 Alu 137 not_TE_peak all_peaks 0.4675767918
827 <NA> NA not_TE_peak all_peaks NA
828 <NA> NA not_TE_peak all_peaks NA
829 Simple_repeat 24 TE_peak all_peaks 1.0000000000
830 Simple_repeat 29 TE_peak all_peaks 1.0000000000
831 Alu 15 not_TE_peak all_peaks 0.1282051282
832 <NA> NA not_TE_peak all_peaks NA
833 <NA> NA not_TE_peak all_peaks NA
834 <NA> NA not_TE_peak all_peaks NA
835 hAT-Charlie 155 not_TE_peak all_peaks 0.4572271386
836 <NA> NA not_TE_peak all_peaks NA
837 L1 74 TE_peak all_peaks 1.0000000000
838 Alu 230 TE_peak all_peaks 0.8550185874
839 <NA> NA not_TE_peak all_peaks NA
840 <NA> NA not_TE_peak all_peaks NA
841 L2 95 TE_peak all_peaks 0.8715596330
842 ERV1 465 TE_peak all_peaks 1.0000000000
843 <NA> NA not_TE_peak all_peaks NA
844 Alu 144 TE_peak all_peaks 0.8780487805
845 ERVL-MaLR 369 TE_peak all_peaks 1.0000000000
846 Alu 61 TE_peak all_peaks 0.6288659794
847 TcMar-Tigger 84 not_TE_peak all_peaks 0.3373493976
848 MIR 172 TE_peak all_peaks 1.0000000000
849 L2 450 not_TE_peak all_peaks 0.4550050556
850 <NA> NA not_TE_peak all_peaks NA
851 L2 821 TE_peak all_peaks 1.0000000000
852 hAT-Charlie 81 not_TE_peak all_peaks 0.0996309963
853 Alu 59 not_TE_peak all_peaks 0.1643454039
854 hAT-Charlie 199 TE_peak all_peaks 1.0000000000
855 Simple_repeat 44 TE_peak all_peaks 1.0000000000
856 Simple_repeat 55 TE_peak all_peaks 1.0000000000
857 <NA> NA not_TE_peak all_peaks NA
858 <NA> NA not_TE_peak all_peaks NA
859 Alu 182 TE_peak all_peaks 0.5741324921
860 Alu 199 TE_peak all_peaks 0.6655518395
861 TcMar-Tigger 220 not_TE_peak all_peaks 0.2101241643
862 <NA> NA not_TE_peak all_peaks NA
863 Simple_repeat 28 TE_peak all_peaks 1.0000000000
864 Simple_repeat 53 TE_peak all_peaks 1.0000000000
865 5S-Deu-L2 397 TE_peak all_peaks 1.0000000000
866 ERVL-MaLR 369 TE_peak all_peaks 0.8218262806
867 TcMar-Tigger 58 not_TE_peak all_peaks 0.4296296296
868 Alu 69 not_TE_peak all_peaks 0.2225806452
869 Simple_repeat 40 TE_peak all_peaks 1.0000000000
870 Simple_repeat 29 TE_peak all_peaks 1.0000000000
871 Alu 105 not_TE_peak all_peaks 0.3633217993
872 ERVL 14 not_TE_peak all_peaks 0.1000000000
873 <NA> NA not_TE_peak all_peaks NA
874 <NA> NA not_TE_peak all_peaks NA
875 hAT-Charlie 38 TE_peak all_peaks 1.0000000000
876 Low_complexity 34 TE_peak all_peaks 1.0000000000
877 Alu 318 TE_peak all_peaks 1.0000000000
878 Simple_repeat 53 TE_peak all_peaks 1.0000000000
879 Simple_repeat 55 TE_peak all_peaks 1.0000000000
880 Alu 41 TE_peak all_peaks 1.0000000000
881 Simple_repeat 19 TE_peak all_peaks 1.0000000000
882 ERV1 204 TE_peak all_peaks 1.0000000000
883 Alu 305 TE_peak all_peaks 1.0000000000
884 Alu 57 not_TE_peak all_peaks 0.3048128342
885 Alu 169 TE_peak all_peaks 0.5577557756
886 ERV1 54 TE_peak all_peaks 1.0000000000
887 ERV1 82 TE_peak all_peaks 1.0000000000
888 Alu 210 TE_peak all_peaks 0.6953642384
889 Simple_repeat 3 not_TE_peak all_peaks 0.0714285714
890 Alu 257 TE_peak all_peaks 0.8210862620
891 Alu 62 not_TE_peak all_peaks 0.4275862069
892 ERVL-MaLR 42 not_TE_peak all_peaks 0.2187500000
893 TcMar-Tigger 219 TE_peak all_peaks 1.0000000000
894 Alu 244 TE_peak all_peaks 0.7870967742
895 ERVL-MaLR 24 not_TE_peak all_peaks 0.2033898305
896 L2 68 not_TE_peak all_peaks 0.1552511416
897 Alu 164 TE_peak all_peaks 0.5540540541
898 MIR 66 TE_peak all_peaks 1.0000000000
899 hAT-Charlie 158 TE_peak all_peaks 1.0000000000
900 <NA> NA not_TE_peak all_peaks NA
901 Simple_repeat 1 not_TE_peak all_peaks 0.0153846154
902 L1 258 TE_peak all_peaks 1.0000000000
903 L2 50 TE_peak all_peaks 1.0000000000
904 MIR 217 TE_peak all_peaks 1.0000000000
905 ERV1 75 not_TE_peak all_peaks 0.3260869565
906 hAT-Tip100 167 TE_peak all_peaks 1.0000000000
907 MIR 124 TE_peak all_peaks 1.0000000000
908 Alu 9 not_TE_peak all_peaks 0.0378151261
909 <NA> NA not_TE_peak all_peaks NA
910 hAT-Charlie 82 TE_peak all_peaks 0.5578231293
911 ERV1 592 TE_peak all_peaks 1.0000000000
912 ERV1 65 not_TE_peak all_peaks 0.3757225434
913 <NA> NA not_TE_peak all_peaks NA
914 L2 50 not_TE_peak all_peaks 0.1953125000
915 MIR 122 TE_peak all_peaks 1.0000000000
916 MIR 244 TE_peak all_peaks 1.0000000000
917 L1 102 not_TE_peak all_peaks 0.2090163934
918 Simple_repeat 68 TE_peak all_peaks 1.0000000000
919 Simple_repeat 35 TE_peak all_peaks 1.0000000000
920 hAT-Charlie 50 not_TE_peak all_peaks 0.1408450704
921 Simple_repeat 20 TE_peak all_peaks 1.0000000000
922 Alu 43 not_TE_peak all_peaks 0.1378205128
923 hAT-Tip100 116 TE_peak all_peaks 1.0000000000
924 <NA> NA not_TE_peak all_peaks NA
925 Alu 133 TE_peak all_peaks 1.0000000000
926 L2 53 TE_peak all_peaks 0.5698924731
927 L2 43 TE_peak all_peaks 1.0000000000
928 MIR 170 TE_peak all_peaks 0.8717948718
929 <NA> NA not_TE_peak all_peaks NA
930 <NA> NA not_TE_peak all_peaks NA
931 Alu 105 not_TE_peak all_peaks 0.3453947368
932 MIR 85 TE_peak all_peaks 0.6800000000
933 Simple_repeat 40 TE_peak all_peaks 1.0000000000
934 Simple_repeat 25 TE_peak all_peaks 1.0000000000
935 Simple_repeat 53 TE_peak all_peaks 1.0000000000
936 Simple_repeat 58 TE_peak all_peaks 1.0000000000
937 DNA? 50 TE_peak all_peaks 0.7812500000
938 MIR 113 TE_peak all_peaks 1.0000000000
939 MIR 162 TE_peak all_peaks 1.0000000000
940 Simple_repeat 75 TE_peak all_peaks 1.0000000000
941 L2 439 not_TE_peak all_peaks 0.4675186368
942 MIR 55 not_TE_peak all_peaks 0.2488687783
943 CR1 2 not_TE_peak all_peaks 0.0168067227
944 <NA> NA not_TE_peak all_peaks NA
945 MIR 162 TE_peak all_peaks 0.8481675393
946 L2 110 TE_peak all_peaks 1.0000000000
947 Alu 2 not_TE_peak all_peaks 0.0067796610
948 <NA> NA not_TE_peak all_peaks NA
949 <NA> NA not_TE_peak all_peaks NA
950 <NA> NA not_TE_peak all_peaks NA
951 MIR 128 TE_peak all_peaks 1.0000000000
952 MIR 5 not_TE_peak all_peaks 0.0384615385
953 Simple_repeat 29 TE_peak all_peaks 1.0000000000
954 Simple_repeat 25 TE_peak all_peaks 1.0000000000
955 Simple_repeat 40 TE_peak all_peaks 1.0000000000
956 Simple_repeat 45 TE_peak all_peaks 1.0000000000
957 Simple_repeat 35 TE_peak all_peaks 1.0000000000
958 Simple_repeat 547 TE_peak all_peaks 1.0000000000
959 Simple_repeat 39 TE_peak all_peaks 0.7647058824
960 ERVL 487 not_TE_peak all_peaks 0.3975510204
961 ERVL 699 TE_peak all_peaks 0.6020671835
962 Simple_repeat 26 TE_peak all_peaks 1.0000000000
963 L2 38 TE_peak all_peaks 1.0000000000
964 <NA> NA not_TE_peak all_peaks NA
965 Simple_repeat 224 TE_peak all_peaks 1.0000000000
966 Simple_repeat 54 TE_peak all_peaks 1.0000000000
967 <NA> NA not_TE_peak all_peaks NA
968 <NA> NA not_TE_peak all_peaks NA
969 <NA> NA not_TE_peak all_peaks NA
970 <NA> NA not_TE_peak all_peaks NA
971 <NA> NA not_TE_peak all_peaks NA
972 Simple_repeat 6 not_TE_peak all_peaks 0.2000000000
973 MIR 53 TE_peak all_peaks 0.5300000000
974 L2 184 TE_peak all_peaks 1.0000000000
975 MIR 62 TE_peak all_peaks 1.0000000000
976 L2 41 TE_peak all_peaks 1.0000000000
977 TcMar-Tigger 95 not_TE_peak all_peaks 0.3220338983
978 L2 79 not_TE_peak all_peaks 0.0608628659
979 CR1 185 TE_peak all_peaks 0.6727272727
980 MIR 34 not_TE_peak all_peaks 0.4250000000
981 <NA> NA not_TE_peak all_peaks NA
982 <NA> NA not_TE_peak all_peaks NA
983 <NA> NA not_TE_peak all_peaks NA
984 ERVL-MaLR 484 TE_peak all_peaks 1.0000000000
985 Simple_repeat 44 TE_peak all_peaks 1.0000000000
986 L1 5 not_TE_peak all_peaks 0.0229357798
987 ERVL-MaLR 66 TE_peak all_peaks 1.0000000000
988 <NA> NA not_TE_peak all_peaks NA
989 Alu 50 not_TE_peak all_peaks 0.3144654088
990 Alu 48 TE_peak all_peaks 1.0000000000
991 Low_complexity 15 TE_peak all_peaks 0.5555555556
992 L1 331 TE_peak all_peaks 0.7306843267
993 Alu 89 TE_peak all_peaks 0.9081632653
994 MIR 70 TE_peak all_peaks 0.9333333333
995 MIR 85 TE_peak all_peaks 1.0000000000
996 Alu 57 not_TE_peak all_peaks 0.1770186335
997 Simple_repeat 39 TE_peak all_peaks 1.0000000000
998 ERVL-MaLR 48 TE_peak all_peaks 0.8727272727
999 Alu 189 TE_peak all_peaks 0.6156351792
1000 Alu 68 not_TE_peak all_peaks 0.2200647249
1001 MIR 23 not_TE_peak all_peaks 0.1755725191
1002 L2 773 TE_peak all_peaks 1.0000000000
1003 L2 286 TE_peak all_peaks 1.0000000000
1004 <NA> NA not_TE_peak all_peaks NA
1005 hAT-Charlie 28 not_TE_peak all_peaks 0.3255813953
1006 Simple_repeat 86 TE_peak all_peaks 1.0000000000
1007 MIR 50 TE_peak all_peaks 1.0000000000
1008 MIR 152 TE_peak all_peaks 0.9681528662
1009 Alu 28 not_TE_peak all_peaks 0.0962199313
1010 Alu 108 not_TE_peak all_peaks 0.3576158940
1011 MIR 154 TE_peak all_peaks 1.0000000000
1012 L2 321 TE_peak all_peaks 0.7345537757
1013 <NA> NA not_TE_peak all_peaks NA
1014 Alu 85 TE_peak all_peaks 0.8947368421
1015 Alu 107 TE_peak all_peaks 1.0000000000
1016 <NA> NA not_TE_peak all_peaks NA
1017 Low_complexity 44 TE_peak all_peaks 1.0000000000
1018 MIR 59 TE_peak all_peaks 0.8428571429
1019 <NA> NA not_TE_peak all_peaks NA
1020 <NA> NA not_TE_peak all_peaks NA
1021 L2 9 not_TE_peak all_peaks 0.0154109589
1022 CR1 158 TE_peak all_peaks 0.6666666667
1023 Alu 72 not_TE_peak all_peaks 0.2250000000
1024 Simple_repeat 32 TE_peak all_peaks 1.0000000000
1025 Alu 296 TE_peak all_peaks 1.0000000000
1026 <NA> NA not_TE_peak all_peaks NA
1027 Alu 152 not_TE_peak all_peaks 0.4856230032
1028 Alu 48 not_TE_peak all_peaks 0.1558441558
1029 hAT-Charlie 341 TE_peak all_peaks 1.0000000000
1030 Alu 87 not_TE_peak all_peaks 0.2779552716
1031 <NA> NA not_TE_peak all_peaks NA
1032 Alu 156 TE_peak all_peaks 0.5016077170
1033 hAT-Charlie 193 TE_peak all_peaks 1.0000000000
1034 Alu 73 not_TE_peak all_peaks 0.2310126582
1035 MIR 68 TE_peak all_peaks 1.0000000000
1036 L2 105 TE_peak all_peaks 1.0000000000
1037 MIR 37 TE_peak all_peaks 0.5362318841
1038 Alu 78 not_TE_peak all_peaks 0.2222222222
1039 CR1 348 TE_peak all_peaks 0.9109947644
1040 Alu 57 TE_peak all_peaks 0.6333333333
1041 hAT-Charlie 40 TE_peak all_peaks 1.0000000000
1042 Alu 277 TE_peak all_peaks 1.0000000000
1043 Alu 299 TE_peak all_peaks 1.0000000000
1044 hAT-Charlie 145 TE_peak all_peaks 0.8787878788
1045 Alu 83 TE_peak all_peaks 0.6384615385
1046 Low_complexity 45 TE_peak all_peaks 1.0000000000
1047 Simple_repeat 19 TE_peak all_peaks 1.0000000000
1048 MIR 10 not_TE_peak all_peaks 0.0478468900
1049 <NA> NA not_TE_peak all_peaks NA
1050 <NA> NA not_TE_peak all_peaks NA
1051 <NA> NA not_TE_peak all_peaks NA
1052 <NA> NA not_TE_peak all_peaks NA
1053 <NA> NA not_TE_peak all_peaks NA
1054 L2 74 TE_peak all_peaks 1.0000000000
1055 <NA> NA not_TE_peak all_peaks NA
1056 MIR 44 TE_peak all_peaks 0.7457627119
1057 hAT-Charlie 190 TE_peak all_peaks 1.0000000000
1058 MIR 211 TE_peak all_peaks 0.9678899083
1059 <NA> NA not_TE_peak all_peaks NA
1060 Alu 199 TE_peak all_peaks 0.6524590164
1061 Alu 129 not_TE_peak all_peaks 0.4961538462
1062 <NA> NA not_TE_peak all_peaks NA
1063 Simple_repeat 29 TE_peak all_peaks 1.0000000000
1064 Simple_repeat 38 TE_peak all_peaks 1.0000000000
1065 Alu 74 not_TE_peak all_peaks 0.2450331126
1066 MIR 30 not_TE_peak all_peaks 0.2068965517
1067 <NA> NA not_TE_peak all_peaks NA
1068 Alu 104 not_TE_peak all_peaks 0.3478260870
1069 Alu 11 not_TE_peak all_peaks 0.0374149660
1070 <NA> NA not_TE_peak all_peaks NA
1071 Simple_repeat 59 TE_peak all_peaks 1.0000000000
1072 Simple_repeat 24 TE_peak all_peaks 1.0000000000
1073 Simple_repeat 6 TE_peak all_peaks 1.0000000000
1074 Alu 114 not_TE_peak all_peaks 0.4810126582
1075 Alu 299 TE_peak all_peaks 1.0000000000
1076 Alu 32 not_TE_peak all_peaks 0.1849710983
1077 Alu 100 not_TE_peak all_peaks 0.4739336493
1078 Simple_repeat 32 TE_peak all_peaks 1.0000000000
1079 Alu 24 not_TE_peak all_peaks 0.0848056537
1080 <NA> NA not_TE_peak all_peaks NA
1081 Low_complexity 43 TE_peak all_peaks 1.0000000000
1082 hAT-Charlie 174 not_TE_peak all_peaks 0.4578947368
1083 TcMar-Tc2 302 TE_peak all_peaks 1.0000000000
1084 L2 152 TE_peak all_peaks 0.5033112583
1085 ERVL-MaLR 195 TE_peak all_peaks 0.5284552846
1086 ERVL-MaLR 69 TE_peak all_peaks 1.0000000000
1087 ERVL-MaLR 346 TE_peak all_peaks 1.0000000000
1088 ERVL-MaLR 94 not_TE_peak all_peaks 0.2520107239
1089 hAT-Tip100 156 TE_peak all_peaks 1.0000000000
1090 Alu 116 not_TE_peak all_peaks 0.4084507042
1091 Simple_repeat 25 TE_peak all_peaks 1.0000000000
1092 Alu 209 TE_peak all_peaks 0.8744769874
1093 Alu 104 TE_peak all_peaks 1.0000000000
1094 ERVL-MaLR 11 not_TE_peak all_peaks 0.0964912281
1095 L2 113 TE_peak all_peaks 0.7018633540
1096 Alu 135 not_TE_peak all_peaks 0.4655172414
1097 Alu 3 not_TE_peak all_peaks 0.0168539326
1098 L2 902 TE_peak all_peaks 0.9308565531
1099 L1 476 TE_peak all_peaks 0.8336252189
1100 L2 157 TE_peak all_peaks 1.0000000000
1101 Alu 11 not_TE_peak all_peaks 0.0347003155
1102 Simple_repeat 28 TE_peak all_peaks 0.9655172414
1103 L2 7 not_TE_peak all_peaks 0.0534351145
1104 MIR 57 TE_peak all_peaks 0.8906250000
1105 MIR 215 TE_peak all_peaks 1.0000000000
1106 Simple_repeat 49 TE_peak all_peaks 1.0000000000
1107 Alu 56 not_TE_peak all_peaks 0.3274853801
1108 Alu 256 TE_peak all_peaks 0.8393442623
1109 ERVL 230 TE_peak all_peaks 0.8778625954
1110 ERVL 111 TE_peak all_peaks 0.7928571429
1111 Alu 124 not_TE_peak all_peaks 0.4119601329
1112 L1 122 TE_peak all_peaks 1.0000000000
1113 Simple_repeat 20 TE_peak all_peaks 1.0000000000
1114 Simple_repeat 32 TE_peak all_peaks 1.0000000000
1115 MIR 199 TE_peak all_peaks 1.0000000000
1116 L2 416 not_TE_peak all_peaks 0.4566410538
1117 Alu 14 not_TE_peak all_peaks 0.0546875000
1118 Alu 136 TE_peak all_peaks 1.0000000000
1119 Alu 170 TE_peak all_peaks 0.5414012739
1120 Alu 155 TE_peak all_peaks 0.5201342282
1121 Simple_repeat 76 TE_peak all_peaks 1.0000000000
1122 <NA> NA not_TE_peak all_peaks NA
1123 <NA> NA not_TE_peak all_peaks NA
1124 Alu 146 not_TE_peak all_peaks 0.4932432432
1125 MIR 62 TE_peak all_peaks 1.0000000000
1126 Alu 174 TE_peak all_peaks 0.5918367347
1127 Alu 149 TE_peak all_peaks 1.0000000000
1128 TcMar-Tigger 402 TE_peak all_peaks 0.6943005181
1129 Alu 141 not_TE_peak all_peaks 0.4592833876
1130 Alu 253 TE_peak all_peaks 0.8605442177
1131 L2 191 TE_peak all_peaks 0.8925233645
1132 <NA> NA not_TE_peak all_peaks NA
1133 <NA> NA not_TE_peak all_peaks NA
1134 <NA> NA not_TE_peak all_peaks NA
1135 <NA> NA not_TE_peak all_peaks NA
1136 Alu 203 TE_peak all_peaks 0.6904761905
1137 <NA> NA not_TE_peak all_peaks NA
1138 L2 144 not_TE_peak all_peaks 0.4272997033
1139 Alu 45 not_TE_peak all_peaks 0.1480263158
1140 <NA> NA not_TE_peak all_peaks NA
1141 <NA> NA not_TE_peak all_peaks NA
1142 <NA> NA not_TE_peak all_peaks NA
1143 <NA> NA not_TE_peak all_peaks NA
1144 Alu 10 not_TE_peak all_peaks 0.0310559006
1145 Alu 55 not_TE_peak all_peaks 0.1851851852
1146 MIR 67 not_TE_peak all_peaks 0.3130841121
1147 L2 40 TE_peak all_peaks 1.0000000000
1148 MIR 120 TE_peak all_peaks 1.0000000000
1149 Alu 10 not_TE_peak all_peaks 0.0320512821
1150 MIR 8 not_TE_peak all_peaks 0.0412371134
1151 Alu 181 TE_peak all_peaks 0.6073825503
1152 <NA> NA not_TE_peak all_peaks NA
1153 Alu 62 not_TE_peak all_peaks 0.2844036697
1154 Alu 157 TE_peak all_peaks 0.5286195286
1155 MIR 58 not_TE_peak all_peaks 0.2959183673
1156 Simple_repeat 41 TE_peak all_peaks 1.0000000000
1157 <NA> NA not_TE_peak all_peaks NA
1158 <NA> NA not_TE_peak all_peaks NA
1159 Alu 229 TE_peak all_peaks 0.7557755776
1160 L2 59 TE_peak all_peaks 1.0000000000
1161 <NA> NA not_TE_peak all_peaks NA
1162 <NA> NA not_TE_peak all_peaks NA
1163 <NA> NA not_TE_peak all_peaks NA
1164 DNA? 112 TE_peak all_peaks 1.0000000000
1165 ERVL 290 TE_peak all_peaks 0.9863945578
1166 ERVL 14 not_TE_peak all_peaks 0.0657276995
1167 L2 314 TE_peak all_peaks 0.8626373626
1168 L2 61 TE_peak all_peaks 1.0000000000
1169 <NA> NA not_TE_peak all_peaks NA
1170 L1 161 not_TE_peak all_peaks 0.3418259023
1171 L1 30 not_TE_peak all_peaks 0.2307692308
1172 Simple_repeat 42 TE_peak all_peaks 1.0000000000
1173 <NA> NA not_TE_peak all_peaks NA
1174 ERVL-MaLR 375 TE_peak all_peaks 0.9191176471
1175 L1 15 not_TE_peak all_peaks 0.3061224490
1176 RTE-BovB 676 TE_peak all_peaks 0.8355995056
1177 5S-Deu-L2 108 TE_peak all_peaks 1.0000000000
1178 <NA> NA not_TE_peak all_peaks NA
1179 <NA> NA not_TE_peak all_peaks NA
1180 <NA> NA not_TE_peak all_peaks NA
1181 Simple_repeat 23 TE_peak all_peaks 1.0000000000
1182 Simple_repeat 297 not_TE_peak all_peaks 0.2133620690
1183 Low_complexity 6 not_TE_peak all_peaks 0.1090909091
1184 <NA> NA not_TE_peak all_peaks NA
1185 <NA> NA not_TE_peak all_peaks NA
1186 <NA> NA not_TE_peak all_peaks NA
1187 <NA> NA not_TE_peak all_peaks NA
1188 Simple_repeat 35 TE_peak all_peaks 1.0000000000
1189 Simple_repeat 81 TE_peak all_peaks 1.0000000000
1190 Simple_repeat 66 TE_peak all_peaks 1.0000000000
1191 Simple_repeat 45 TE_peak all_peaks 1.0000000000
1192 Simple_repeat 38 TE_peak all_peaks 1.0000000000
1193 Simple_repeat 96 TE_peak all_peaks 1.0000000000
1194 Simple_repeat 49 TE_peak all_peaks 1.0000000000
1195 <NA> NA not_TE_peak all_peaks NA
1196 <NA> NA not_TE_peak all_peaks NA
1197 <NA> NA not_TE_peak all_peaks NA
1198 MIR 78 TE_peak all_peaks 0.6500000000
1199 Simple_repeat 26 TE_peak all_peaks 1.0000000000
1200 Simple_repeat 33 TE_peak all_peaks 1.0000000000
1201 <NA> NA not_TE_peak all_peaks NA
1202 <NA> NA not_TE_peak all_peaks NA
1203 Alu 81 not_TE_peak all_peaks 0.2793103448
1204 hAT-Charlie 186 TE_peak all_peaks 1.0000000000
1205 Alu 272 TE_peak all_peaks 0.8717948718
1206 <NA> NA not_TE_peak all_peaks NA
1207 <NA> NA not_TE_peak all_peaks NA
1208 L2 108 TE_peak all_peaks 0.9310344828
1209 L2 76 TE_peak all_peaks 1.0000000000
1210 hAT-Tip100 33 not_TE_peak all_peaks 0.1875000000
1211 MIR 5 not_TE_peak all_peaks 0.0211864407
1212 MIR 142 TE_peak all_peaks 1.0000000000
1213 <NA> NA not_TE_peak all_peaks NA
1214 MIR 126 TE_peak all_peaks 0.9545454545
1215 <NA> NA not_TE_peak all_peaks NA
1216 Simple_repeat 65 TE_peak all_peaks 1.0000000000
1217 Simple_repeat 120 TE_peak all_peaks 1.0000000000
1218 Simple_repeat 58 TE_peak all_peaks 1.0000000000
1219 <NA> NA not_TE_peak all_peaks NA
1220 MIR 86 TE_peak all_peaks 0.5695364238
1221 Low_complexity 41 TE_peak all_peaks 1.0000000000
1222 Alu 61 not_TE_peak all_peaks 0.1974110032
1223 Simple_repeat 5 not_TE_peak all_peaks 0.1162790698
1224 <NA> NA not_TE_peak all_peaks NA
1225 MIR 47 TE_peak all_peaks 1.0000000000
1226 <NA> NA not_TE_peak all_peaks NA
1227 Simple_repeat 229 TE_peak all_peaks 1.0000000000
1228 <NA> NA not_TE_peak all_peaks NA
1229 Simple_repeat 75 TE_peak all_peaks 1.0000000000
1230 Low_complexity 38 TE_peak all_peaks 1.0000000000
1231 L2 259 TE_peak all_peaks 1.0000000000
1232 Alu 48 not_TE_peak all_peaks 0.1621621622
1233 <NA> NA not_TE_peak all_peaks NA
1234 MIR 47 not_TE_peak all_peaks 0.2460732984
1235 MIR 172 TE_peak all_peaks 1.0000000000
1236 Simple_repeat 93 TE_peak all_peaks 1.0000000000
1237 <NA> NA not_TE_peak all_peaks NA
1238 L2 174 TE_peak all_peaks 0.8487804878
1239 <NA> NA not_TE_peak all_peaks NA
1240 <NA> NA not_TE_peak all_peaks NA
1241 Alu 55 not_TE_peak all_peaks 0.1821192053
1242 hAT-Charlie 87 TE_peak all_peaks 1.0000000000
1243 MIR 189 TE_peak all_peaks 1.0000000000
1244 Alu 77 not_TE_peak all_peaks 0.3347826087
1245 Alu 70 not_TE_peak all_peaks 0.3804347826
1246 MIR 59 TE_peak all_peaks 1.0000000000
1247 MIR 195 TE_peak all_peaks 1.0000000000
1248 Low_complexity 55 TE_peak all_peaks 1.0000000000
1249 MIR 75 TE_peak all_peaks 0.5474452555
1250 Simple_repeat 39 TE_peak all_peaks 1.0000000000
1251 L2 274 TE_peak all_peaks 0.9042904290
1252 MIR 60 not_TE_peak all_peaks 0.3409090909
1253 <NA> NA not_TE_peak all_peaks NA
1254 Simple_repeat 40 TE_peak all_peaks 1.0000000000
1255 Low_complexity 36 TE_peak all_peaks 1.0000000000
1256 Low_complexity 53 TE_peak all_peaks 1.0000000000
1257 hAT-Charlie 124 not_TE_peak all_peaks 0.2123287671
1258 MIR 53 TE_peak all_peaks 1.0000000000
1259 Alu 4 not_TE_peak all_peaks 0.0137931034
1260 <NA> NA not_TE_peak all_peaks NA
1261 hAT-Charlie 64 not_TE_peak all_peaks 0.3832335329
1262 snRNA 64 TE_peak all_peaks 1.0000000000
1263 Alu 95 not_TE_peak all_peaks 0.3209459459
1264 <NA> NA not_TE_peak all_peaks NA
1265 L1 6 not_TE_peak all_peaks 0.0500000000
1266 hAT-Charlie 145 not_TE_peak all_peaks 0.4096045198
1267 <NA> NA not_TE_peak all_peaks NA
1268 Simple_repeat 34 TE_peak all_peaks 1.0000000000
1269 Alu 115 not_TE_peak all_peaks 0.3820598007
1270 MIR 24 not_TE_peak all_peaks 0.2181818182
1271 hAT-Tip100 180 TE_peak all_peaks 1.0000000000
1272 Alu 83 TE_peak all_peaks 0.6102941176
1273 MIR 28 not_TE_peak all_peaks 0.1783439490
1274 TcMar-Tc2 62 TE_peak all_peaks 1.0000000000
1275 Alu 281 TE_peak all_peaks 1.0000000000
1276 TcMar-Tc2 23 TE_peak all_peaks 1.0000000000
1277 Alu 8 not_TE_peak all_peaks 0.0260586319
1278 <NA> NA not_TE_peak all_peaks NA
1279 hAT-Blackjack 48 not_TE_peak all_peaks 0.2191780822
1280 L2 43 TE_peak all_peaks 1.0000000000
1281 Simple_repeat 284 TE_peak all_peaks 1.0000000000
1282 <NA> NA not_TE_peak all_peaks NA
1283 CR1 173 not_TE_peak all_peaks 0.3295238095
1284 Simple_repeat 49 TE_peak all_peaks 1.0000000000
1285 <NA> NA not_TE_peak all_peaks NA
1286 L2 62 not_TE_peak all_peaks 0.2683982684
1287 Simple_repeat 22 TE_peak all_peaks 1.0000000000
1288 MIR 42 TE_peak all_peaks 0.5454545455
1289 L2 74 not_TE_peak all_peaks 0.3775510204
1290 <NA> NA not_TE_peak all_peaks NA
1291 Simple_repeat 110 TE_peak all_peaks 0.7096774194
1292 Simple_repeat 73 TE_peak all_peaks 1.0000000000
1293 Simple_repeat 177 TE_peak all_peaks 1.0000000000
1294 <NA> NA not_TE_peak all_peaks NA
1295 MIR 204 TE_peak all_peaks 1.0000000000
1296 Simple_repeat 965 TE_peak all_peaks 1.0000000000
1297 Alu 148 not_TE_peak all_peaks 0.4916943522
1298 MIR 7 not_TE_peak all_peaks 0.0409356725
1299 ERVL 196 not_TE_peak all_peaks 0.2490470140
1300 MIR 179 TE_peak all_peaks 1.0000000000
1301 Simple_repeat 17 not_TE_peak all_peaks 0.3148148148
1302 hAT-Tip100 51 TE_peak all_peaks 1.0000000000
1303 MIR 69 TE_peak all_peaks 1.0000000000
1304 Alu 49 not_TE_peak all_peaks 0.1991869919
1305 <NA> NA not_TE_peak all_peaks NA
1306 Simple_repeat 37 TE_peak all_peaks 1.0000000000
1307 MIR 103 TE_peak all_peaks 1.0000000000
1308 <NA> NA not_TE_peak all_peaks NA
1309 <NA> NA not_TE_peak all_peaks NA
1310 L1 183 TE_peak all_peaks 1.0000000000
1311 Alu 72 not_TE_peak all_peaks 0.3380281690
1312 MIR 211 TE_peak all_peaks 1.0000000000
1313 MULE-MuDR 60 TE_peak all_peaks 1.0000000000
1314 <NA> NA not_TE_peak all_peaks NA
1315 MIR 71 TE_peak all_peaks 1.0000000000
1316 Alu 30 not_TE_peak all_peaks 0.0993377483
1317 Alu 89 not_TE_peak all_peaks 0.2899022801
1318 <NA> NA not_TE_peak all_peaks NA
1319 Alu 102 not_TE_peak all_peaks 0.3578947368
1320 CR1 75 TE_peak all_peaks 1.0000000000
1321 MIR 92 TE_peak all_peaks 1.0000000000
1322 Simple_repeat 71 TE_peak all_peaks 1.0000000000
1323 Simple_repeat 53 TE_peak all_peaks 1.0000000000
1324 Simple_repeat 54 TE_peak all_peaks 1.0000000000
1325 Alu 146 TE_peak all_peaks 0.5195729537
1326 Alu 130 TE_peak all_peaks 0.7558139535
1327 MIR 148 TE_peak all_peaks 0.6271186441
1328 Simple_repeat 38 TE_peak all_peaks 1.0000000000
1329 Simple_repeat 8 not_TE_peak all_peaks 0.2424242424
1330 Simple_repeat 569 TE_peak all_peaks 0.8767334361
1331 MIR 6 not_TE_peak all_peaks 0.0810810811
1332 MIR 133 TE_peak all_peaks 0.6963350785
1333 MIR 95 TE_peak all_peaks 1.0000000000
1334 MIR 23 TE_peak all_peaks 1.0000000000
1335 Alu 13 not_TE_peak all_peaks 0.0509803922
1336 L1 134 TE_peak all_peaks 0.6203703704
1337 MIR 161 TE_peak all_peaks 0.9938271605
1338 Simple_repeat 126 TE_peak all_peaks 0.5228215768
1339 ERV1 52 not_TE_peak all_peaks 0.1524926686
1340 MIR 96 TE_peak all_peaks 1.0000000000
1341 Simple_repeat 39 TE_peak all_peaks 1.0000000000
1342 MIR 123 TE_peak all_peaks 1.0000000000
1343 L2 235 TE_peak all_peaks 0.7781456954
1344 ERVL-MaLR 210 TE_peak all_peaks 0.5898876404
1345 <NA> NA not_TE_peak all_peaks NA
1346 <NA> NA not_TE_peak all_peaks NA
1347 <NA> NA not_TE_peak all_peaks NA
1348 Simple_repeat 45 TE_peak all_peaks 1.0000000000
1349 L2 116 not_TE_peak all_peaks 0.3625000000
1350 MIR 56 TE_peak all_peaks 0.5600000000
1351 <NA> NA not_TE_peak all_peaks NA
1352 <NA> NA not_TE_peak all_peaks NA
1353 <NA> NA not_TE_peak all_peaks NA
1354 Simple_repeat 33 TE_peak all_peaks 1.0000000000
1355 Alu 248 TE_peak all_peaks 0.8522336770
1356 L1 125 TE_peak all_peaks 1.0000000000
1357 L1 265 TE_peak all_peaks 0.8493589744
1358 L1 18 not_TE_peak all_peaks 0.0576923077
1359 L1 228 TE_peak all_peaks 1.0000000000
1360 Alu 215 TE_peak all_peaks 0.7597173145
1361 MIR 38 not_TE_peak all_peaks 0.1958762887
1362 <NA> NA not_TE_peak all_peaks NA
1363 <NA> NA not_TE_peak all_peaks NA
1364 <NA> NA not_TE_peak all_peaks NA
1365 MIR 167 TE_peak all_peaks 0.8882978723
1366 hAT-Tip100 68 TE_peak all_peaks 1.0000000000
1367 Simple_repeat 38 TE_peak all_peaks 1.0000000000
1368 Alu 30 not_TE_peak all_peaks 0.1176470588
1369 <NA> NA not_TE_peak all_peaks NA
1370 <NA> NA not_TE_peak all_peaks NA
1371 MIR 108 TE_peak all_peaks 1.0000000000
1372 Simple_repeat 29 TE_peak all_peaks 0.8529411765
1373 Simple_repeat 19 not_TE_peak all_peaks 0.4871794872
1374 <NA> NA not_TE_peak all_peaks NA
1375 MIR 164 TE_peak all_peaks 1.0000000000
1376 Simple_repeat 13 not_TE_peak all_peaks 0.0285087719
1377 <NA> NA not_TE_peak all_peaks NA
1378 snRNA 120 TE_peak all_peaks 1.0000000000
1379 hAT-Charlie 271 TE_peak all_peaks 1.0000000000
1380 ERVL-MaLR 154 TE_peak all_peaks 1.0000000000
1381 Alu 320 TE_peak all_peaks 1.0000000000
1382 Simple_repeat 48 TE_peak all_peaks 1.0000000000
1383 snRNA 4 not_TE_peak all_peaks 0.0333333333
1384 <NA> NA not_TE_peak all_peaks NA
1385 Simple_repeat 32 TE_peak all_peaks 1.0000000000
1386 Simple_repeat 99 TE_peak all_peaks 1.0000000000
1387 Low_complexity 66 TE_peak all_peaks 1.0000000000
1388 Simple_repeat 24 TE_peak all_peaks 1.0000000000
1389 Alu 92 not_TE_peak all_peaks 0.2967741935
1390 MIR 105 TE_peak all_peaks 1.0000000000
1391 Simple_repeat 54 TE_peak all_peaks 1.0000000000
1392 Simple_repeat 44 TE_peak all_peaks 1.0000000000
1393 MIR 152 TE_peak all_peaks 1.0000000000
1394 MIR 74 not_TE_peak all_peaks 0.3394495413
1395 Alu 67 not_TE_peak all_peaks 0.2278911565
1396 MIR 46 TE_peak all_peaks 1.0000000000
1397 Simple_repeat 32 TE_peak all_peaks 1.0000000000
1398 <NA> NA not_TE_peak all_peaks NA
1399 hAT-Charlie 23 not_TE_peak all_peaks 0.3239436620
1400 L2 153 TE_peak all_peaks 0.9622641509
1401 hAT-Charlie 37 not_TE_peak all_peaks 0.2114285714
1402 L2 35 not_TE_peak all_peaks 0.3932584270
1403 L2 193 TE_peak all_peaks 1.0000000000
1404 Alu 13 not_TE_peak all_peaks 0.0426229508
1405 Alu 182 TE_peak all_peaks 0.6211604096
1406 <NA> NA not_TE_peak all_peaks NA
1407 L2 99 TE_peak all_peaks 1.0000000000
1408 Alu 45 not_TE_peak all_peaks 0.1505016722
1409 MIR 64 not_TE_peak all_peaks 0.4923076923
1410 MIR 131 TE_peak all_peaks 1.0000000000
1411 <NA> NA not_TE_peak all_peaks NA
1412 MIR 124 TE_peak all_peaks 1.0000000000
1413 ERV1 184 not_TE_peak all_peaks 0.4026258206
1414 Simple_repeat 36 TE_peak all_peaks 0.6000000000
1415 L2 249 TE_peak all_peaks 0.8767605634
1416 <NA> NA not_TE_peak all_peaks NA
1417 Alu 40 not_TE_peak all_peaks 0.1413427562
1418 hAT-Tip100 91 TE_peak all_peaks 1.0000000000
1419 MIR 87 TE_peak all_peaks 1.0000000000
1420 CR1 72 not_TE_peak all_peaks 0.4235294118
1421 L2 347 TE_peak all_peaks 0.6066433566
1422 ERVL-MaLR 15 not_TE_peak all_peaks 0.0781250000
1423 ERV1 363 TE_peak all_peaks 1.0000000000
1424 Alu 73 not_TE_peak all_peaks 0.2339743590
1425 <NA> NA not_TE_peak all_peaks NA
1426 ERVL 167 TE_peak all_peaks 0.9277777778
1427 Alu 210 TE_peak all_peaks 0.6796116505
1428 Alu 100 not_TE_peak all_peaks 0.3472222222
1429 Simple_repeat 58 TE_peak all_peaks 1.0000000000
1430 hAT-Charlie 158 TE_peak all_peaks 1.0000000000
1431 MIR 150 TE_peak all_peaks 0.6912442396
1432 <NA> NA not_TE_peak all_peaks NA
1433 MIR 41 not_TE_peak all_peaks 0.2102564103
1434 MIR 119 TE_peak all_peaks 1.0000000000
1435 <NA> NA not_TE_peak all_peaks NA
1436 L2 153 not_TE_peak all_peaks 0.3963730570
1437 hAT-Charlie 1 not_TE_peak all_peaks 0.0096153846
1438 MIR 13 not_TE_peak all_peaks 0.0543933054
1439 MIR 123 TE_peak all_peaks 1.0000000000
1440 <NA> NA not_TE_peak all_peaks NA
1441 L2 8 not_TE_peak all_peaks 0.0253968254
1442 Alu 149 TE_peak all_peaks 1.0000000000
1443 L2 24 not_TE_peak all_peaks 0.0926640927
1444 <NA> NA not_TE_peak all_peaks NA
1445 <NA> NA not_TE_peak all_peaks NA
1446 Alu 138 not_TE_peak all_peaks 0.4911032028
1447 RTE-BovB 96 TE_peak all_peaks 1.0000000000
1448 <NA> NA not_TE_peak all_peaks NA
1449 <NA> NA not_TE_peak all_peaks NA
1450 Alu 53 not_TE_peak all_peaks 0.1790540541
1451 ERVL 329 not_TE_peak all_peaks 0.4416107383
1452 TcMar-Tigger 200 TE_peak all_peaks 0.5714285714
1453 Alu 260 TE_peak all_peaks 0.8306709265
1454 <NA> NA not_TE_peak all_peaks NA
1455 <NA> NA not_TE_peak all_peaks NA
1456 <NA> NA not_TE_peak all_peaks NA
1457 CR1 89 TE_peak all_peaks 0.7007874016
1458 MIR 49 not_TE_peak all_peaks 0.2237442922
1459 MIR 65 not_TE_peak all_peaks 0.3551912568
1460 L2 472 TE_peak all_peaks 0.7527910686
1461 hAT-Charlie 33 not_TE_peak all_peaks 0.0967741935
1462 MIR 102 TE_peak all_peaks 1.0000000000
1463 Simple_repeat 33 TE_peak all_peaks 1.0000000000
1464 Simple_repeat 20 TE_peak all_peaks 1.0000000000
1465 Simple_repeat 18 TE_peak all_peaks 1.0000000000
1466 MIR 28 not_TE_peak all_peaks 0.1124497992
1467 TcMar-Tigger 178 not_TE_peak all_peaks 0.4696569921
1468 <NA> NA not_TE_peak all_peaks NA
1469 MIR 67 TE_peak all_peaks 1.0000000000
1470 MIR 175 TE_peak all_peaks 1.0000000000
1471 <NA> NA not_TE_peak all_peaks NA
1472 <NA> NA not_TE_peak all_peaks NA
1473 TcMar-Tigger 8 not_TE_peak all_peaks 0.0842105263
1474 <NA> NA not_TE_peak all_peaks NA
1475 <NA> NA not_TE_peak all_peaks NA
1476 <NA> NA not_TE_peak all_peaks NA
1477 L2 87 TE_peak all_peaks 1.0000000000
1478 <NA> NA not_TE_peak all_peaks NA
1479 Simple_repeat 30 TE_peak all_peaks 0.6382978723
1480 L2 298 TE_peak all_peaks 0.7412935323
1481 <NA> NA not_TE_peak all_peaks NA
1482 Alu 75 TE_peak all_peaks 0.6465517241
1483 L1 160 not_TE_peak all_peaks 0.4419889503
1484 L1 37 not_TE_peak all_peaks 0.2824427481
1485 L1 102 TE_peak all_peaks 1.0000000000
1486 MIR 16 not_TE_peak all_peaks 0.0952380952
1487 MIR 117 TE_peak all_peaks 1.0000000000
1488 Alu 123 TE_peak all_peaks 0.5278969957
1489 L2 77 TE_peak all_peaks 0.6062992126
1490 MIR 42 not_TE_peak all_peaks 0.2427745665
1491 <NA> NA not_TE_peak all_peaks NA
1492 Alu 160 TE_peak all_peaks 0.5161290323
1493 hAT-Charlie 127 TE_peak all_peaks 1.0000000000
1494 hAT-Charlie 119 TE_peak all_peaks 1.0000000000
1495 L2 141 not_TE_peak all_peaks 0.3852459016
1496 MIR 37 TE_peak all_peaks 1.0000000000
1497 Alu 126 not_TE_peak all_peaks 0.4104234528
1498 Simple_repeat 602 TE_peak all_peaks 1.0000000000
1499 MIR 15 not_TE_peak all_peaks 0.1219512195
1500 L2 64 TE_peak all_peaks 0.7619047619
1501 Low_complexity 52 TE_peak all_peaks 1.0000000000
1502 MIR 125 TE_peak all_peaks 0.8064516129
1503 hAT-Charlie 151 TE_peak all_peaks 1.0000000000
1504 MIR 79 TE_peak all_peaks 0.8586956522
1505 <NA> NA not_TE_peak all_peaks NA
1506 Simple_repeat 50 TE_peak all_peaks 1.0000000000
1507 hAT-Charlie 100 TE_peak all_peaks 1.0000000000
1508 Low_complexity 42 TE_peak all_peaks 1.0000000000
1509 ERV1 18 not_TE_peak all_peaks 0.3829787234
1510 L2 158 TE_peak all_peaks 1.0000000000
1511 Simple_repeat 101 TE_peak all_peaks 1.0000000000
1512 L2 182 TE_peak all_peaks 0.8544600939
1513 ERV1 67 TE_peak all_peaks 1.0000000000
1514 Alu 295 TE_peak all_peaks 1.0000000000
1515 ERV1 17 TE_peak all_peaks 1.0000000000
1516 Alu 68 not_TE_peak all_peaks 0.2214983713
1517 <NA> NA not_TE_peak all_peaks NA
1518 Simple_repeat 38 TE_peak all_peaks 0.9268292683
1519 Alu 67 not_TE_peak all_peaks 0.2233333333
1520 <NA> NA not_TE_peak all_peaks NA
1521 <NA> NA not_TE_peak all_peaks NA
1522 <NA> NA not_TE_peak all_peaks NA
1523 <NA> NA not_TE_peak all_peaks NA
1524 ERVL 3 not_TE_peak all_peaks 0.0714285714
1525 MIR 159 TE_peak all_peaks 0.6625000000
1526 <NA> NA not_TE_peak all_peaks NA
1527 Low_complexity 36 TE_peak all_peaks 1.0000000000
1528 ERVL-MaLR 354 TE_peak all_peaks 0.9806094183
1529 L1 29 not_TE_peak all_peaks 0.0552380952
1530 <NA> NA not_TE_peak all_peaks NA
1531 Simple_repeat 20 TE_peak all_peaks 1.0000000000
1532 <NA> NA not_TE_peak all_peaks NA
1533 ERV1 2 not_TE_peak all_peaks 0.0080971660
1534 Alu 272 TE_peak all_peaks 0.9251700680
1535 Alu 197 TE_peak all_peaks 1.0000000000
1536 <NA> NA not_TE_peak all_peaks NA
1537 Alu 45 not_TE_peak all_peaks 0.1480263158
1538 Alu 24 not_TE_peak all_peaks 0.0808080808
1539 hAT-Blackjack 102 TE_peak all_peaks 1.0000000000
1540 MIR 39 TE_peak all_peaks 1.0000000000
1541 L2 84 TE_peak all_peaks 0.6511627907
1542 Simple_repeat 40 TE_peak all_peaks 1.0000000000
1543 hAT-Charlie 123 TE_peak all_peaks 0.6089108911
1544 MIR 111 TE_peak all_peaks 1.0000000000
1545 MIR 229 TE_peak all_peaks 1.0000000000
1546 MIR 74 TE_peak all_peaks 0.9610389610
1547 Simple_repeat 51 TE_peak all_peaks 1.0000000000
1548 Simple_repeat 87 TE_peak all_peaks 1.0000000000
1549 Simple_repeat 84 TE_peak all_peaks 1.0000000000
1550 Simple_repeat 22 TE_peak all_peaks 1.0000000000
1551 Alu 180 TE_peak all_peaks 0.5940594059
1552 Alu 68 not_TE_peak all_peaks 0.2266666667
1553 MIR 150 TE_peak all_peaks 1.0000000000
1554 MIR 179 TE_peak all_peaks 1.0000000000
1555 hAT-Charlie 103 TE_peak all_peaks 1.0000000000
1556 MIR 30 not_TE_peak all_peaks 0.1363636364
1557 hAT-Charlie 154 TE_peak all_peaks 1.0000000000
1558 L2 4 not_TE_peak all_peaks 0.0076628352
1559 L2 63 not_TE_peak all_peaks 0.1536585366
1560 <NA> NA not_TE_peak all_peaks NA
1561 Simple_repeat 13 not_TE_peak all_peaks 0.3250000000
1562 <NA> NA not_TE_peak all_peaks NA
1563 Simple_repeat 38 TE_peak all_peaks 1.0000000000
1564 <NA> NA not_TE_peak all_peaks NA
1565 ERVL 74 TE_peak all_peaks 1.0000000000
1566 Simple_repeat 109 TE_peak all_peaks 1.0000000000
1567 hAT-Charlie 164 TE_peak all_peaks 0.9479768786
1568 TcMar? 48 not_TE_peak all_peaks 0.3333333333
1569 <NA> NA not_TE_peak all_peaks NA
1570 MIR 68 not_TE_peak all_peaks 0.4892086331
1571 MIR 68 not_TE_peak all_peaks 0.4276729560
1572 ERVL-MaLR 300 TE_peak all_peaks 0.9202453988
1573 ERVL-MaLR 44 TE_peak all_peaks 1.0000000000
1574 L2 104 TE_peak all_peaks 1.0000000000
1575 MIR 79 TE_peak all_peaks 1.0000000000
1576 <NA> NA not_TE_peak all_peaks NA
1577 Alu 284 TE_peak all_peaks 1.0000000000
1578 Simple_repeat 40 TE_peak all_peaks 1.0000000000
1579 ERVL-MaLR 124 TE_peak all_peaks 0.9465648855
1580 L1 120 TE_peak all_peaks 0.5128205128
1581 <NA> NA not_TE_peak all_peaks NA
1582 ERV1 163 not_TE_peak all_peaks 0.3240556660
1583 MIR 1 not_TE_peak all_peaks 0.0054347826
1584 L2 75 TE_peak all_peaks 0.6578947368
1585 Simple_repeat 228 TE_peak all_peaks 0.9230769231
1586 L2 424 TE_peak all_peaks 1.0000000000
1587 ERVL 83 TE_peak all_peaks 0.6335877863
1588 MIR 110 TE_peak all_peaks 0.6962025316
1589 L2 52 not_TE_peak all_peaks 0.3880597015
1590 ERVL-MaLR 65 TE_peak all_peaks 1.0000000000
1591 ERVL-MaLR 31 not_TE_peak all_peaks 0.4558823529
1592 Simple_repeat 61 TE_peak all_peaks 1.0000000000
1593 Simple_repeat 40 TE_peak all_peaks 1.0000000000
1594 Simple_repeat 74 TE_peak all_peaks 1.0000000000
1595 <NA> NA not_TE_peak all_peaks NA
1596 MIR 29 not_TE_peak all_peaks 0.2132352941
1597 MIR 192 TE_peak all_peaks 1.0000000000
1598 MIR 75 TE_peak all_peaks 1.0000000000
1599 hAT-Charlie 218 TE_peak all_peaks 1.0000000000
1600 L2 78 TE_peak all_peaks 0.5954198473
1601 tRNA 35 TE_peak all_peaks 1.0000000000
1602 MIR 50 TE_peak all_peaks 1.0000000000
1603 MIR 34 TE_peak all_peaks 1.0000000000
1604 MIR 69 TE_peak all_peaks 1.0000000000
1605 hAT-Charlie 9 not_TE_peak all_peaks 0.0450000000
1606 MIR 84 TE_peak all_peaks 0.5454545455
1607 L2 436 TE_peak all_peaks 0.8466019417
1608 L2 164 TE_peak all_peaks 1.0000000000
1609 Simple_repeat 50 TE_peak all_peaks 1.0000000000
1610 <NA> NA not_TE_peak all_peaks NA
1611 MIR 20 not_TE_peak all_peaks 0.1388888889
1612 MIR 36 not_TE_peak all_peaks 0.4500000000
1613 L2 48 TE_peak all_peaks 0.7164179104
1614 hAT-Charlie 171 TE_peak all_peaks 1.0000000000
1615 Alu 116 not_TE_peak all_peaks 0.3803278689
1616 <NA> NA not_TE_peak all_peaks NA
1617 L2 32 not_TE_peak all_peaks 0.3106796117
1618 MIR 1 not_TE_peak all_peaks 0.0057471264
1619 MIR 209 TE_peak all_peaks 1.0000000000
1620 hAT-Charlie 398 TE_peak all_peaks 1.0000000000
1621 Alu 256 TE_peak all_peaks 0.8258064516
1622 <NA> NA not_TE_peak all_peaks NA
1623 L2 119 TE_peak all_peaks 1.0000000000
1624 L2 119 TE_peak all_peaks 1.0000000000
1625 L2 44 TE_peak all_peaks 1.0000000000
1626 Simple_repeat 28 TE_peak all_peaks 1.0000000000
1627 L2 42 not_TE_peak all_peaks 0.0963302752
1628 hAT-Charlie 43 not_TE_peak all_peaks 0.2128712871
1629 MIR 228 TE_peak all_peaks 1.0000000000
1630 MIR 39 not_TE_peak all_peaks 0.3482142857
1631 MIR 78 TE_peak all_peaks 1.0000000000
1632 L2 55 TE_peak all_peaks 0.5789473684
1633 Alu 10 not_TE_peak all_peaks 0.0338983051
1634 TcMar-Tigger 140 TE_peak all_peaks 1.0000000000
1635 MIR 82 TE_peak all_peaks 0.5503355705
1636 hAT-Blackjack 99 TE_peak all_peaks 0.5129533679
1637 MIR 92 not_TE_peak all_peaks 0.3432835821
1638 hAT-Charlie 105 TE_peak all_peaks 1.0000000000
1639 MIR 40 not_TE_peak all_peaks 0.1869158879
1640 hAT-Charlie 112 TE_peak all_peaks 0.5833333333
1641 MIR 28 not_TE_peak all_peaks 0.3181818182
1642 MIR 170 TE_peak all_peaks 1.0000000000
1643 MIR 17 not_TE_peak all_peaks 0.0677290837
1644 MIR 78 TE_peak all_peaks 1.0000000000
1645 Simple_repeat 9 TE_peak all_peaks 1.0000000000
1646 Low_complexity 29 TE_peak all_peaks 1.0000000000
1647 Low_complexity 69 TE_peak all_peaks 1.0000000000
1648 <NA> NA not_TE_peak all_peaks NA
1649 ERVL-MaLR 193 TE_peak all_peaks 1.0000000000
1650 CR1 44 not_TE_peak all_peaks 0.1781376518
1651 Simple_repeat 59 TE_peak all_peaks 1.0000000000
1652 Simple_repeat 28 TE_peak all_peaks 1.0000000000
1653 MIR 211 TE_peak all_peaks 0.9504504505
1654 <NA> NA not_TE_peak all_peaks NA
1655 ERVL-MaLR 5 not_TE_peak all_peaks 0.0961538462
1656 <NA> NA not_TE_peak all_peaks NA
1657 L2 219 TE_peak all_peaks 1.0000000000
1658 L2 130 not_TE_peak all_peaks 0.4100946372
1659 MIR 115 TE_peak all_peaks 1.0000000000
1660 ERVL-MaLR 32 not_TE_peak all_peaks 0.1022364217
1661 MIR 50 not_TE_peak all_peaks 0.4761904762
1662 Simple_repeat 26 TE_peak all_peaks 1.0000000000
1663 L1 313 TE_peak all_peaks 0.6427104723
1664 TcMar-Tigger 161 TE_peak all_peaks 0.7892156863
1665 MIR 68 TE_peak all_peaks 1.0000000000
1666 MIR 110 not_TE_peak all_peaks 0.3691275168
1667 ERV1 380 TE_peak all_peaks 0.7900207900
1668 MIR 95 TE_peak all_peaks 1.0000000000
1669 Simple_repeat 36 TE_peak all_peaks 1.0000000000
1670 MIR 89 TE_peak all_peaks 0.9780219780
1671 MIR 65 TE_peak all_peaks 1.0000000000
1672 MIR 199 TE_peak all_peaks 0.9754901961
1673 Simple_repeat 45 TE_peak all_peaks 1.0000000000
1674 hAT-Charlie 9 not_TE_peak all_peaks 0.0789473684
1675 hAT-Charlie 98 TE_peak all_peaks 1.0000000000
1676 Alu 63 not_TE_peak all_peaks 0.2032258065
1677 Simple_repeat 46 TE_peak all_peaks 1.0000000000
1678 Simple_repeat 69 TE_peak all_peaks 1.0000000000
1679 Simple_repeat 22 TE_peak all_peaks 1.0000000000
1680 hAT-Charlie 186 TE_peak all_peaks 1.0000000000
1681 CR1 148 TE_peak all_peaks 1.0000000000
1682 MIR 33 TE_peak all_peaks 0.5000000000
1683 L1 293 TE_peak all_peaks 0.8905775076
1684 <NA> NA not_TE_peak all_peaks NA
1685 ERVL-MaLR 473 TE_peak all_peaks 1.0000000000
1686 ERVL-MaLR 26 not_TE_peak all_peaks 0.1125541126
1687 Unknown 121 TE_peak all_peaks 1.0000000000
1688 MIR 177 TE_peak all_peaks 1.0000000000
1689 L2 291 TE_peak all_peaks 0.9122257053
1690 <NA> NA not_TE_peak all_peaks NA
1691 <NA> NA not_TE_peak all_peaks NA
1692 hAT-Charlie 189 TE_peak all_peaks 1.0000000000
1693 <NA> NA not_TE_peak all_peaks NA
1694 <NA> NA not_TE_peak all_peaks NA
1695 ERVL-MaLR 553 TE_peak all_peaks 0.9684763573
1696 MIR 207 TE_peak all_peaks 1.0000000000
1697 <NA> NA not_TE_peak all_peaks NA
1698 Unknown 178 TE_peak all_peaks 1.0000000000
1699 MIR 57 not_TE_peak all_peaks 0.2500000000
1700 ERVL-MaLR 74 not_TE_peak all_peaks 0.2090395480
1701 MIR 56 TE_peak all_peaks 1.0000000000
1702 MIR 89 not_TE_peak all_peaks 0.4659685864
1703 hAT-Charlie 94 TE_peak all_peaks 0.5662650602
1704 MIR 126 TE_peak all_peaks 1.0000000000
1705 ERVL-MaLR 51 not_TE_peak all_peaks 0.1108695652
1706 ERVL-MaLR 191 not_TE_peak all_peaks 0.4152173913
1707 <NA> NA not_TE_peak all_peaks NA
1708 <NA> NA not_TE_peak all_peaks NA
1709 CR1 98 TE_peak all_peaks 1.0000000000
1710 ERV1 357 TE_peak all_peaks 0.8439716312
1711 L1 130 TE_peak all_peaks 0.8965517241
1712 Alu 37 not_TE_peak all_peaks 0.1241610738
1713 ERVK 438 not_TE_peak all_peaks 0.4567257560
1714 DNA 78 TE_peak all_peaks 1.0000000000
1715 Simple_repeat 42 TE_peak all_peaks 1.0000000000
1716 MIR 114 TE_peak all_peaks 0.6705882353
1717 MIR 141 TE_peak all_peaks 1.0000000000
1718 Simple_repeat 41 TE_peak all_peaks 1.0000000000
1719 MIR 69 TE_peak all_peaks 1.0000000000
1720 Alu 91 TE_peak all_peaks 0.7398373984
1721 Alu 42 not_TE_peak all_peaks 0.1354838710
1722 Alu 137 not_TE_peak all_peaks 0.4659863946
1723 MIR 66 TE_peak all_peaks 1.0000000000
1724 Low_complexity 40 TE_peak all_peaks 1.0000000000
1725 hAT-Charlie 164 TE_peak all_peaks 0.8078817734
1726 Alu 113 not_TE_peak all_peaks 0.3992932862
1727 <NA> NA not_TE_peak all_peaks NA
1728 L2 196 TE_peak all_peaks 1.0000000000
1729 Low_complexity 53 TE_peak all_peaks 1.0000000000
1730 Simple_repeat 52 TE_peak all_peaks 1.0000000000
1731 Simple_repeat 62 TE_peak all_peaks 1.0000000000
1732 MIR 17 not_TE_peak all_peaks 0.1307692308
1733 L2 406 TE_peak all_peaks 0.5734463277
1734 L2 182 TE_peak all_peaks 0.7647058824
1735 <NA> NA not_TE_peak all_peaks NA
1736 Alu 92 not_TE_peak all_peaks 0.3274021352
1737 Simple_repeat 21 TE_peak all_peaks 1.0000000000
1738 Alu 71 TE_peak all_peaks 0.5725806452
1739 Alu 63 not_TE_peak all_peaks 0.2210526316
1740 Simple_repeat 37 TE_peak all_peaks 1.0000000000
1741 Alu 29 not_TE_peak all_peaks 0.0989761092
1742 ERVL 104 not_TE_peak all_peaks 0.2246220302
1743 ERVL-MaLR 296 TE_peak all_peaks 0.8579710145
1744 hAT-Charlie 17 not_TE_peak all_peaks 0.4358974359
1745 TcMar-Tigger 272 TE_peak all_peaks 1.0000000000
1746 Alu 110 TE_peak all_peaks 0.7333333333
1747 Simple_repeat 8 not_TE_peak all_peaks 0.4705882353
1748 L2 113 TE_peak all_peaks 1.0000000000
1749 Low_complexity 59 TE_peak all_peaks 1.0000000000
1750 Simple_repeat 31 TE_peak all_peaks 1.0000000000
1751 Low_complexity 43 TE_peak all_peaks 1.0000000000
1752 <NA> NA not_TE_peak all_peaks NA
1753 <NA> NA not_TE_peak all_peaks NA
1754 ERVL-MaLR 315 TE_peak all_peaks 0.9210526316
1755 Alu 51 not_TE_peak all_peaks 0.1655844156
1756 L2 126 TE_peak all_peaks 0.7411764706
1757 Alu 81 TE_peak all_peaks 1.0000000000
1758 Alu 84 not_TE_peak all_peaks 0.2709677419
1759 Alu 4 not_TE_peak all_peaks 0.0268456376
1760 Simple_repeat 74 TE_peak all_peaks 1.0000000000
1761 <NA> NA not_TE_peak all_peaks NA
1762 Alu 13 not_TE_peak all_peaks 0.0422077922
1763 Alu 241 TE_peak all_peaks 0.8033333333
1764 MIR 53 TE_peak all_peaks 1.0000000000
1765 Simple_repeat 44 TE_peak all_peaks 1.0000000000
1766 Simple_repeat 4 not_TE_peak all_peaks 0.1538461538
1767 L2 101 TE_peak all_peaks 0.5674157303
1768 hAT-Charlie 71 TE_peak all_peaks 1.0000000000
1769 Alu 23 not_TE_peak all_peaks 0.0795847751
1770 <NA> NA not_TE_peak all_peaks NA
1771 Alu 50 not_TE_peak all_peaks 0.3205128205
1772 <NA> NA not_TE_peak all_peaks NA
1773 <NA> NA not_TE_peak all_peaks NA
1774 <NA> NA not_TE_peak all_peaks NA
1775 MIR 200 TE_peak all_peaks 1.0000000000
1776 MIR 48 not_TE_peak all_peaks 0.3310344828
1777 Alu 44 not_TE_peak all_peaks 0.1433224756
1778 Simple_repeat 23 TE_peak all_peaks 1.0000000000
1779 Simple_repeat 25 TE_peak all_peaks 1.0000000000
1780 <NA> NA not_TE_peak all_peaks NA
1781 hAT-Charlie 71 TE_peak all_peaks 1.0000000000
1782 Alu 27 not_TE_peak all_peaks 0.1560693642
1783 <NA> NA not_TE_peak all_peaks NA
1784 ERVL 434 TE_peak all_peaks 0.7654320988
1785 Alu 160 TE_peak all_peaks 0.5755395683
1786 Alu 106 TE_peak all_peaks 0.8983050847
1787 ERV1 215 TE_peak all_peaks 1.0000000000
1788 Alu 22 not_TE_peak all_peaks 0.0664652568
1789 Alu 44 not_TE_peak all_peaks 0.3308270677
1790 ERV1 253 TE_peak all_peaks 1.0000000000
1791 Alu 86 not_TE_peak all_peaks 0.2895622896
1792 MIR 95 TE_peak all_peaks 1.0000000000
1793 L1 30 not_TE_peak all_peaks 0.1851851852
1794 <NA> NA not_TE_peak all_peaks NA
1795 MIR 61 TE_peak all_peaks 1.0000000000
1796 L2 117 not_TE_peak all_peaks 0.2984693878
1797 L2 144 not_TE_peak all_peaks 0.3673469388
1798 L2 62 TE_peak all_peaks 1.0000000000
1799 Alu 74 not_TE_peak all_peaks 0.2551724138
1800 L2 130 TE_peak all_peaks 0.8227848101
1801 MIR 111 TE_peak all_peaks 1.0000000000
1802 Simple_repeat 22 TE_peak all_peaks 1.0000000000
1803 Alu 296 TE_peak all_peaks 0.9610389610
1804 Alu 81 TE_peak all_peaks 1.0000000000
1805 L2 189 TE_peak all_peaks 0.8750000000
1806 Simple_repeat 19 TE_peak all_peaks 1.0000000000
1807 Simple_repeat 34 TE_peak all_peaks 1.0000000000
1808 Simple_repeat 60 TE_peak all_peaks 1.0000000000
1809 Simple_repeat 48 TE_peak all_peaks 1.0000000000
1810 Simple_repeat 40 TE_peak all_peaks 1.0000000000
1811 <NA> NA not_TE_peak all_peaks NA
1812 Alu 98 not_TE_peak all_peaks 0.3223684211
1813 Alu 133 TE_peak all_peaks 1.0000000000
1814 Simple_repeat 98 TE_peak all_peaks 1.0000000000
1815 Alu 99 TE_peak all_peaks 1.0000000000
1816 <NA> NA not_TE_peak all_peaks NA
1817 Alu 44 not_TE_peak all_peaks 0.1506849315
1818 L1 277 TE_peak all_peaks 0.8602484472
1819 Alu 195 TE_peak all_peaks 0.8478260870
1820 Alu 289 TE_peak all_peaks 1.0000000000
1821 Alu 44 not_TE_peak all_peaks 0.1496598639
1822 Alu 111 not_TE_peak all_peaks 0.3712374582
1823 MIR 71 TE_peak all_peaks 1.0000000000
1824 <NA> NA not_TE_peak all_peaks NA
1825 <NA> NA not_TE_peak all_peaks NA
1826 ERVL-MaLR 156 TE_peak all_peaks 1.0000000000
1827 ERVL-MaLR 155 TE_peak all_peaks 1.0000000000
1828 L1 65 TE_peak all_peaks 0.7738095238
1829 hAT-Charlie 230 TE_peak all_peaks 0.7744107744
1830 L2 121 TE_peak all_peaks 0.5238095238
1831 MIR 220 TE_peak all_peaks 1.0000000000
1832 MIR 33 not_TE_peak all_peaks 0.1208791209
1833 <NA> NA not_TE_peak all_peaks NA
1834 L2 75 TE_peak all_peaks 1.0000000000
1835 L2 102 TE_peak all_peaks 1.0000000000
1836 MIR 69 TE_peak all_peaks 0.7666666667
1837 L2 64 not_TE_peak all_peaks 0.2857142857
1838 MIR 185 TE_peak all_peaks 1.0000000000
1839 MIR 97 TE_peak all_peaks 1.0000000000
1840 L2 92 TE_peak all_peaks 0.6865671642
1841 Simple_repeat 29 TE_peak all_peaks 1.0000000000
1842 CR1 98 TE_peak all_peaks 1.0000000000
1843 Low_complexity 36 TE_peak all_peaks 1.0000000000
1844 Low_complexity 49 TE_peak all_peaks 1.0000000000
1845 MIR 67 TE_peak all_peaks 1.0000000000
1846 MIR 97 TE_peak all_peaks 1.0000000000
1847 ERVL 217 TE_peak all_peaks 1.0000000000
1848 Alu 88 not_TE_peak all_peaks 0.2838709677
1849 Simple_repeat 32 TE_peak all_peaks 1.0000000000
1850 MIR 109 TE_peak all_peaks 1.0000000000
1851 Alu 197 TE_peak all_peaks 0.6961130742
1852 MIR 108 TE_peak all_peaks 1.0000000000
1853 MIR 124 TE_peak all_peaks 1.0000000000
1854 MIR 101 TE_peak all_peaks 1.0000000000
1855 MIR 49 not_TE_peak all_peaks 0.3951612903
1856 Low_complexity 57 TE_peak all_peaks 1.0000000000
1857 Simple_repeat 39 TE_peak all_peaks 1.0000000000
1858 Simple_repeat 16 TE_peak all_peaks 1.0000000000
1859 Low_complexity 49 TE_peak all_peaks 1.0000000000
1860 MIR 77 TE_peak all_peaks 1.0000000000
1861 Low_complexity 12 not_TE_peak all_peaks 0.3870967742
1862 hAT-Tip100 155 TE_peak all_peaks 1.0000000000
1863 hAT-Tip100 91 TE_peak all_peaks 1.0000000000
1864 MIR 119 TE_peak all_peaks 0.9596774194
1865 hAT-Charlie 70 TE_peak all_peaks 1.0000000000
1866 Alu 120 not_TE_peak all_peaks 0.3658536585
1867 MIR 176 TE_peak all_peaks 0.8421052632
1868 L2 91 TE_peak all_peaks 1.0000000000
1869 <NA> NA not_TE_peak all_peaks NA
1870 L2 372 TE_peak all_peaks 0.9920000000
1871 Alu 53 not_TE_peak all_peaks 0.2078431373
1872 Simple_repeat 23 TE_peak all_peaks 1.0000000000
1873 Simple_repeat 143 TE_peak all_peaks 1.0000000000
1874 MIR 87 TE_peak all_peaks 1.0000000000
1875 MIR 116 TE_peak all_peaks 1.0000000000
1876 MIR 74 TE_peak all_peaks 0.6666666667
1877 L2 96 TE_peak all_peaks 1.0000000000
1878 Alu 109 TE_peak all_peaks 0.8384615385
1879 Simple_repeat 44 TE_peak all_peaks 1.0000000000
1880 Simple_repeat 24 TE_peak all_peaks 1.0000000000
1881 MIR 32 not_TE_peak all_peaks 0.2580645161
1882 MIR 182 TE_peak all_peaks 1.0000000000
1883 MIR 66 TE_peak all_peaks 1.0000000000
1884 MIR 37 not_TE_peak all_peaks 0.2569444444
1885 TcMar-Tigger 83 TE_peak all_peaks 1.0000000000
1886 Low_complexity 54 TE_peak all_peaks 1.0000000000
1887 <NA> NA not_TE_peak all_peaks NA
1888 Simple_repeat 71 TE_peak all_peaks 1.0000000000
1889 L2 163 TE_peak all_peaks 0.6680327869
1890 MIR 137 TE_peak all_peaks 1.0000000000
1891 Simple_repeat 51 TE_peak all_peaks 1.0000000000
1892 Alu 174 TE_peak all_peaks 1.0000000000
1893 Alu 1 not_TE_peak all_peaks 0.0036496350
1894 MIR 69 TE_peak all_peaks 1.0000000000
1895 MIR 2 not_TE_peak all_peaks 0.0094339623
1896 <NA> NA not_TE_peak all_peaks NA
1897 L2 56 TE_peak all_peaks 0.5283018868
1898 Simple_repeat 57 TE_peak all_peaks 1.0000000000
1899 Simple_repeat 56 TE_peak all_peaks 1.0000000000
1900 MIR 163 TE_peak all_peaks 0.8956043956
1901 <NA> NA not_TE_peak all_peaks NA
1902 MIR 104 TE_peak all_peaks 0.8000000000
1903 <NA> NA not_TE_peak all_peaks NA
1904 MIR 41 not_TE_peak all_peaks 0.2697368421
1905 CR1 72 TE_peak all_peaks 1.0000000000
1906 Alu 73 not_TE_peak all_peaks 0.2433333333
1907 MIR 88 TE_peak all_peaks 1.0000000000
1908 MIR 74 TE_peak all_peaks 1.0000000000
1909 Simple_repeat 33 TE_peak all_peaks 1.0000000000
1910 MIR 20 not_TE_peak all_peaks 0.1769911504
1911 MIR 141 TE_peak all_peaks 0.8980891720
1912 <NA> NA not_TE_peak all_peaks NA
1913 Simple_repeat 36 TE_peak all_peaks 1.0000000000
1914 Alu 275 TE_peak all_peaks 0.8785942492
1915 Alu 68 TE_peak all_peaks 1.0000000000
1916 ERVL-MaLR 69 not_TE_peak all_peaks 0.3898305085
1917 Alu 82 TE_peak all_peaks 1.0000000000
1918 hAT-Charlie 108 TE_peak all_peaks 1.0000000000
1919 Alu 309 TE_peak all_peaks 1.0000000000
1920 Alu 2 not_TE_peak all_peaks 0.0066889632
1921 Alu 187 TE_peak all_peaks 0.6032258065
1922 <NA> NA not_TE_peak all_peaks NA
1923 Simple_repeat 27 TE_peak all_peaks 1.0000000000
1924 Simple_repeat 64 TE_peak all_peaks 1.0000000000
1925 MIR 104 TE_peak all_peaks 0.5842696629
1926 <NA> NA not_TE_peak all_peaks NA
1927 Alu 254 TE_peak all_peaks 0.8552188552
1928 <NA> NA not_TE_peak all_peaks NA
1929 <NA> NA not_TE_peak all_peaks NA
1930 <NA> NA not_TE_peak all_peaks NA
1931 ERVL-MaLR 144 TE_peak all_peaks 0.6760563380
1932 L1 236 TE_peak all_peaks 0.9328063241
1933 Alu 113 not_TE_peak all_peaks 0.3729372937
1934 Simple_repeat 39 TE_peak all_peaks 1.0000000000
1935 L2 159 TE_peak all_peaks 0.8412698413
1936 Alu 246 TE_peak all_peaks 0.7987012987
1937 ERVL-MaLR 420 TE_peak all_peaks 0.9567198178
1938 Alu 166 TE_peak all_peaks 0.5949820789
1939 <NA> NA not_TE_peak all_peaks NA
1940 <NA> NA not_TE_peak all_peaks NA
1941 Alu 106 TE_peak all_peaks 0.5760869565
1942 Alu 13 not_TE_peak all_peaks 0.3823529412
1943 MIR 72 TE_peak all_peaks 1.0000000000
1944 Simple_repeat 68 TE_peak all_peaks 1.0000000000
1945 ERVL 11 not_TE_peak all_peaks 0.0733333333
1946 hAT-Tip100 72 TE_peak all_peaks 1.0000000000
1947 snRNA 164 TE_peak all_peaks 1.0000000000
1948 hAT-Charlie 138 TE_peak all_peaks 1.0000000000
1949 tRNA 72 TE_peak all_peaks 1.0000000000
1950 <NA> NA not_TE_peak all_peaks NA
1951 Simple_repeat 54 TE_peak all_peaks 1.0000000000
1952 Simple_repeat 32 TE_peak all_peaks 1.0000000000
1953 Alu 262 TE_peak all_peaks 0.8704318937
1954 hAT-Tip100 138 TE_peak all_peaks 1.0000000000
1955 MIR 95 not_TE_peak all_peaks 0.4398148148
1956 <NA> NA not_TE_peak all_peaks NA
1957 <NA> NA not_TE_peak all_peaks NA
1958 hAT-Charlie 197 TE_peak all_peaks 1.0000000000
1959 tRNA 72 TE_peak all_peaks 1.0000000000
1960 MIR 52 TE_peak all_peaks 1.0000000000
1961 <NA> NA not_TE_peak all_peaks NA
1962 <NA> NA not_TE_peak all_peaks NA
1963 tRNA 28 not_TE_peak all_peaks 0.3835616438
1964 tRNA 74 TE_peak all_peaks 1.0000000000
1965 RTE-BovB 6 not_TE_peak all_peaks 0.0582524272
1966 hAT-Blackjack 10 not_TE_peak all_peaks 0.0520833333
1967 tRNA 75 TE_peak all_peaks 1.0000000000
1968 hAT-Charlie 126 TE_peak all_peaks 1.0000000000
1969 snRNA 164 TE_peak all_peaks 1.0000000000
1970 hAT-Tip100 64 TE_peak all_peaks 1.0000000000
1971 ERVL 164 TE_peak all_peaks 1.0000000000
1972 ERV1 158 not_TE_peak all_peaks 0.4744744745
1973 Alu 264 TE_peak all_peaks 0.9263157895
1974 hAT-Charlie 115 TE_peak all_peaks 1.0000000000
1975 ERV1 100 not_TE_peak all_peaks 0.2538071066
1976 Simple_repeat 33 TE_peak all_peaks 1.0000000000
1977 MIR 146 TE_peak all_peaks 1.0000000000
1978 <NA> NA not_TE_peak all_peaks NA
1979 <NA> NA not_TE_peak all_peaks NA
1980 <NA> NA not_TE_peak all_peaks NA
1981 MIR 117 TE_peak all_peaks 0.5342465753
1982 hAT-Tip100 123 TE_peak all_peaks 1.0000000000
1983 Alu 154 TE_peak all_peaks 0.5220338983
1984 Simple_repeat 60 TE_peak all_peaks 1.0000000000
1985 Simple_repeat 60 TE_peak all_peaks 1.0000000000
1986 MIR 47 TE_peak all_peaks 1.0000000000
1987 Alu 61 not_TE_peak all_peaks 0.1993464052
1988 MIR 19 not_TE_peak all_peaks 0.2533333333
1989 ERVL-MaLR 316 TE_peak all_peaks 0.9844236760
1990 <NA> NA not_TE_peak all_peaks NA
1991 Alu 38 not_TE_peak all_peaks 0.1245901639
1992 MIR 68 TE_peak all_peaks 1.0000000000
1993 MIR 194 TE_peak all_peaks 1.0000000000
1994 Simple_repeat 38 TE_peak all_peaks 1.0000000000
1995 MIR 173 TE_peak all_peaks 1.0000000000
1996 Alu 83 not_TE_peak all_peaks 0.4940476190
1997 <NA> NA not_TE_peak all_peaks NA
1998 <NA> NA not_TE_peak all_peaks NA
1999 MIR 123 TE_peak all_peaks 0.6150000000
2000 Alu 254 TE_peak all_peaks 0.8523489933
2001 MIR 159 TE_peak all_peaks 0.9814814815
2002 Simple_repeat 31 TE_peak all_peaks 0.8857142857
2003 L2 131 TE_peak all_peaks 1.0000000000
2004 hAT-Blackjack 95 TE_peak all_peaks 0.7421875000
2005 Alu 60 not_TE_peak all_peaks 0.2013422819
2006 MIR 106 TE_peak all_peaks 1.0000000000
2007 MIR 107 TE_peak all_peaks 1.0000000000
2008 Alu 46 not_TE_peak all_peaks 0.1543624161
2009 hAT-Charlie 58 not_TE_peak all_peaks 0.2944162437
2010 <NA> NA not_TE_peak all_peaks NA
2011 <NA> NA not_TE_peak all_peaks NA
2012 <NA> NA not_TE_peak all_peaks NA
2013 MIR 127 TE_peak all_peaks 1.0000000000
2014 MIR 213 TE_peak all_peaks 1.0000000000
2015 L2 27 not_TE_peak all_peaks 0.1901408451
2016 Simple_repeat 41 TE_peak all_peaks 1.0000000000
2017 Alu 63 not_TE_peak all_peaks 0.2121212121
2018 ERV1 434 TE_peak all_peaks 1.0000000000
2019 Alu 160 TE_peak all_peaks 0.5387205387
2020 ERV1 342 TE_peak all_peaks 0.9688385269
2021 Simple_repeat 523 TE_peak all_peaks 0.9491833031
2022 ERV1 686 TE_peak all_peaks 1.0000000000
2023 ERV1 151 not_TE_peak all_peaks 0.2972440945
2024 <NA> NA not_TE_peak all_peaks NA
2025 MIR 20 not_TE_peak all_peaks 0.2020202020
2026 L1 215 TE_peak all_peaks 0.5295566502
2027 <NA> NA not_TE_peak all_peaks NA
2028 hAT-Charlie 84 TE_peak all_peaks 0.7118644068
2029 ERV1 290 TE_peak all_peaks 1.0000000000
2030 Alu 54 not_TE_peak all_peaks 0.1806020067
2031 MIR 126 TE_peak all_peaks 1.0000000000
2032 MIR 148 TE_peak all_peaks 1.0000000000
2033 <NA> NA not_TE_peak all_peaks NA
2034 <NA> NA not_TE_peak all_peaks NA
2035 CR1 145 TE_peak all_peaks 1.0000000000
2036 MIR 74 TE_peak all_peaks 1.0000000000
2037 ERV1 398 TE_peak all_peaks 1.0000000000
2038 MIR 20 not_TE_peak all_peaks 0.1818181818
2039 L2 88 not_TE_peak all_peaks 0.4656084656
2040 MIR 112 TE_peak all_peaks 1.0000000000
2041 L2 10 not_TE_peak all_peaks 0.1075268817
2042 L2 73 TE_peak all_peaks 1.0000000000
2043 MIR 71 TE_peak all_peaks 1.0000000000
2044 L2 46 TE_peak all_peaks 1.0000000000
2045 <NA> NA not_TE_peak all_peaks NA
2046 <NA> NA not_TE_peak all_peaks NA
2047 <NA> NA not_TE_peak all_peaks NA
2048 MIR 67 not_TE_peak all_peaks 0.4294871795
2049 Alu 193 TE_peak all_peaks 0.6369636964
2050 ERVL 218 TE_peak all_peaks 0.9954337900
2051 L2 28 not_TE_peak all_peaks 0.3373493976
2052 ERV1 62 TE_peak all_peaks 1.0000000000
2053 MIR 55 TE_peak all_peaks 1.0000000000
2054 <NA> NA not_TE_peak all_peaks NA
2055 <NA> NA not_TE_peak all_peaks NA
2056 Simple_repeat 82 TE_peak all_peaks 1.0000000000
2057 Simple_repeat 22 TE_peak all_peaks 1.0000000000
2058 L2 105 TE_peak all_peaks 1.0000000000
2059 MIR 75 TE_peak all_peaks 1.0000000000
2060 hAT-Charlie 41 TE_peak all_peaks 1.0000000000
2061 Alu 9 not_TE_peak all_peaks 0.0612244898
2062 MIR 69 TE_peak all_peaks 0.5609756098
2063 Alu 190 TE_peak all_peaks 0.9004739336
2064 L1 260 TE_peak all_peaks 0.7784431138
2065 Alu 119 not_TE_peak all_peaks 0.3953488372
2066 Alu 40 not_TE_peak all_peaks 0.2051282051
2067 Alu 54 not_TE_peak all_peaks 0.3776223776
2068 L2 385 TE_peak all_peaks 0.8369565217
2069 L2 83 TE_peak all_peaks 1.0000000000
2070 L2 73 TE_peak all_peaks 1.0000000000
2071 MIR 164 TE_peak all_peaks 0.9820359281
2072 Alu 28 not_TE_peak all_peaks 0.0906148867
2073 MIR 117 TE_peak all_peaks 1.0000000000
2074 ERVL-MaLR 23 not_TE_peak all_peaks 0.0603674541
2075 <NA> NA not_TE_peak all_peaks NA
2076 <NA> NA not_TE_peak all_peaks NA
2077 <NA> NA not_TE_peak all_peaks NA
2078 L2 91 TE_peak all_peaks 1.0000000000
2079 L2 49 TE_peak all_peaks 1.0000000000
2080 L2 149 TE_peak all_peaks 1.0000000000
2081 MIR 188 TE_peak all_peaks 1.0000000000
2082 Simple_repeat 57 TE_peak all_peaks 1.0000000000
2083 L2 43 TE_peak all_peaks 1.0000000000
2084 L2 44 TE_peak all_peaks 1.0000000000
2085 MIR 27 not_TE_peak all_peaks 0.1428571429
2086 L2 114 TE_peak all_peaks 1.0000000000
2087 MIR 74 TE_peak all_peaks 1.0000000000
2088 Low_complexity 36 TE_peak all_peaks 1.0000000000
2089 MIR 135 TE_peak all_peaks 1.0000000000
2090 MIR 37 TE_peak all_peaks 0.5441176471
2091 MIR 40 not_TE_peak all_peaks 0.1990049751
2092 MIR 83 TE_peak all_peaks 0.7033898305
2093 Simple_repeat 26 TE_peak all_peaks 1.0000000000
2094 Simple_repeat 29 TE_peak all_peaks 1.0000000000
2095 MIR 169 TE_peak all_peaks 0.9184782609
2096 L2 201 not_TE_peak all_peaks 0.1431623932
2097 <NA> NA not_TE_peak all_peaks NA
2098 MIR 35 not_TE_peak all_peaks 0.2713178295
2099 MIR 204 TE_peak all_peaks 0.8644067797
2100 <NA> NA not_TE_peak all_peaks NA
2101 MIR 75 TE_peak all_peaks 1.0000000000
2102 MIR 113 TE_peak all_peaks 1.0000000000
2103 Alu 47 not_TE_peak all_peaks 0.1506410256
2104 MIR 73 not_TE_peak all_peaks 0.3173913043
2105 Alu 30 not_TE_peak all_peaks 0.1027397260
2106 Simple_repeat 40 TE_peak all_peaks 0.5263157895
2107 hAT-Blackjack 199 TE_peak all_peaks 1.0000000000
2108 Simple_repeat 8 not_TE_peak all_peaks 0.0243902439
2109 MIR 58 not_TE_peak all_peaks 0.2735849057
2110 Simple_repeat 31 TE_peak all_peaks 1.0000000000
2111 <NA> NA not_TE_peak all_peaks NA
2112 MIR 160 TE_peak all_peaks 1.0000000000
2113 MIR 87 TE_peak all_peaks 1.0000000000
2114 MIR 195 TE_peak all_peaks 1.0000000000
2115 MIR 43 not_TE_peak all_peaks 0.2654320988
2116 ERVL 233 not_TE_peak all_peaks 0.4283088235
2117 <NA> NA not_TE_peak all_peaks NA
2118 MIR 23 TE_peak all_peaks 1.0000000000
2119 hAT-Blackjack 113 TE_peak all_peaks 1.0000000000
2120 MIR 100 TE_peak all_peaks 1.0000000000
2121 MIR 51 not_TE_peak all_peaks 0.3311688312
2122 L2 234 TE_peak all_peaks 0.7312500000
2123 MIR 170 TE_peak all_peaks 1.0000000000
2124 MIR 137 TE_peak all_peaks 1.0000000000
2125 L2 147 TE_peak all_peaks 0.7860962567
2126 L2 194 not_TE_peak all_peaks 0.2298578199
2127 ERVL 140 TE_peak all_peaks 1.0000000000
2128 ERVL-MaLR 96 TE_peak all_peaks 0.5106382979
2129 MIR 74 TE_peak all_peaks 1.0000000000
2130 ERVL 107 not_TE_peak all_peaks 0.0951111111
2131 MIR 152 TE_peak all_peaks 1.0000000000
2132 L2 143 TE_peak all_peaks 0.6383928571
2133 Alu 126 not_TE_peak all_peaks 0.4666666667
2134 Low_complexity 29 TE_peak all_peaks 0.7837837838
2135 MIR 18 not_TE_peak all_peaks 0.0942408377
2136 <NA> NA not_TE_peak all_peaks NA
2137 MIR 146 TE_peak all_peaks 0.8066298343
2138 MIR 38 not_TE_peak all_peaks 0.2289156627
2139 CR1 75 TE_peak all_peaks 1.0000000000
2140 MIR 172 TE_peak all_peaks 1.0000000000
2141 ERVL-MaLR 122 TE_peak all_peaks 1.0000000000
2142 ERVL-MaLR 249 TE_peak all_peaks 0.9188191882
2143 MIR 124 TE_peak all_peaks 0.7898089172
2144 Simple_repeat 35 TE_peak all_peaks 1.0000000000
2145 Simple_repeat 8 TE_peak all_peaks 1.0000000000
2146 L2 104 TE_peak all_peaks 1.0000000000
2147 ERVL-MaLR 232 not_TE_peak all_peaks 0.3993115318
2148 hAT-Charlie 71 not_TE_peak all_peaks 0.3641025641
2149 Helitron 125 TE_peak all_peaks 1.0000000000
2150 ERVL 483 TE_peak all_peaks 0.9698795181
2151 hAT-Charlie 186 TE_peak all_peaks 0.6138613861
2152 ERV1 145 TE_peak all_peaks 0.7837837838
2153 Alu 29 not_TE_peak all_peaks 0.0917721519
2154 L2 75 TE_peak all_peaks 0.6756756757
2155 MIR 164 TE_peak all_peaks 1.0000000000
2156 L2 97 TE_peak all_peaks 1.0000000000
2157 L2 184 TE_peak all_peaks 1.0000000000
2158 MIR 131 TE_peak all_peaks 0.6421568627
2159 MIR 155 TE_peak all_peaks 1.0000000000
2160 L2 206 not_TE_peak all_peaks 0.3864915572
2161 L2 281 TE_peak all_peaks 0.6853658537
2162 <NA> NA not_TE_peak all_peaks NA
2163 Simple_repeat 24 not_TE_peak all_peaks 0.2790697674
2164 Simple_repeat 107 TE_peak all_peaks 1.0000000000
2165 <NA> NA not_TE_peak all_peaks NA
2166 MIR 100 TE_peak all_peaks 1.0000000000
2167 MIR 95 TE_peak all_peaks 1.0000000000
2168 MIR 209 TE_peak all_peaks 0.8393574297
2169 L2 21 not_TE_peak all_peaks 0.1615384615
2170 Simple_repeat 40 TE_peak all_peaks 1.0000000000
2171 MIR 76 not_TE_peak all_peaks 0.3568075117
2172 ERVL-MaLR 158 not_TE_peak all_peaks 0.4425770308
2173 hAT-Charlie 149 TE_peak all_peaks 1.0000000000
2174 L2 14 not_TE_peak all_peaks 0.0163934426
2175 L2 113 not_TE_peak all_peaks 0.1554332875
2176 <NA> NA not_TE_peak all_peaks NA
2177 <NA> NA not_TE_peak all_peaks NA
2178 MIR 137 TE_peak all_peaks 0.6555023923
2179 MIR 131 TE_peak all_peaks 1.0000000000
2180 MIR 30 not_TE_peak all_peaks 0.2013422819
2181 Low_complexity 265 TE_peak all_peaks 0.5086372361
2182 ERVL 415 TE_peak all_peaks 0.7586837294
2183 ERV1 2 not_TE_peak all_peaks 0.0078740157
2184 ERV1 209 not_TE_peak all_peaks 0.3096296296
2185 Alu 38 not_TE_peak all_peaks 0.1254125413
2186 ERVL 332 TE_peak all_peaks 0.5981981982
2187 <NA> NA not_TE_peak all_peaks NA
2188 L2 115 TE_peak all_peaks 0.6052631579
2189 MIR 46 not_TE_peak all_peaks 0.3622047244
2190 hAT-Charlie 65 TE_peak all_peaks 1.0000000000
2191 Simple_repeat 43 TE_peak all_peaks 1.0000000000
2192 Alu 32 not_TE_peak all_peaks 0.1126760563
2193 MIR 206 TE_peak all_peaks 0.6477987421
2194 L1 199 TE_peak all_peaks 1.0000000000
2195 L2 58 not_TE_peak all_peaks 0.4202898551
2196 MIR 101 TE_peak all_peaks 1.0000000000
2197 MIR 29 not_TE_peak all_peaks 0.2000000000
2198 MIR 29 not_TE_peak all_peaks 0.1239316239
2199 L1 540 TE_peak all_peaks 1.0000000000
2200 Low_complexity 29 TE_peak all_peaks 1.0000000000
2201 Simple_repeat 23 TE_peak all_peaks 0.6969696970
2202 <NA> NA not_TE_peak all_peaks NA
2203 Simple_repeat 40 TE_peak all_peaks 1.0000000000
2204 <NA> NA not_TE_peak all_peaks NA
2205 <NA> NA not_TE_peak all_peaks NA
2206 <NA> NA not_TE_peak all_peaks NA
2207 Simple_repeat 3 not_TE_peak all_peaks 0.0566037736
2208 L2 55 not_TE_peak all_peaks 0.1622418879
2209 CR1 127 TE_peak all_peaks 1.0000000000
2210 Simple_repeat 315 TE_peak all_peaks 0.9662576687
2211 MIR 13 not_TE_peak all_peaks 0.1625000000
2212 MIR 175 TE_peak all_peaks 1.0000000000
2213 MIR 196 TE_peak all_peaks 1.0000000000
2214 L2 138 TE_peak all_peaks 1.0000000000
2215 L2 128 TE_peak all_peaks 0.5203252033
2216 Simple_repeat 22 TE_peak all_peaks 1.0000000000
2217 <NA> NA not_TE_peak all_peaks NA
2218 MIR 195 TE_peak all_peaks 1.0000000000
2219 MIR 93 TE_peak all_peaks 0.5081967213
2220 ERVL 44 not_TE_peak all_peaks 0.1781376518
2221 <NA> NA not_TE_peak all_peaks NA
2222 MIR 4 not_TE_peak all_peaks 0.0183486239
2223 <NA> NA not_TE_peak all_peaks NA
2224 MIR 70 not_TE_peak all_peaks 0.3181818182
2225 MIR 118 TE_peak all_peaks 0.9593495935
2226 Simple_repeat 29 TE_peak all_peaks 0.7435897436
2227 MIR 81 TE_peak all_peaks 0.9204545455
2228 L2 65 TE_peak all_peaks 1.0000000000
2229 MIR 99 TE_peak all_peaks 1.0000000000
2230 L2 149 TE_peak all_peaks 1.0000000000
2231 L2 206 TE_peak all_peaks 1.0000000000
2232 Simple_repeat 67 TE_peak all_peaks 1.0000000000
2233 MIR 68 not_TE_peak all_peaks 0.4331210191
2234 <NA> NA not_TE_peak all_peaks NA
2235 MIR 58 not_TE_peak all_peaks 0.2857142857
2236 Simple_repeat 57 TE_peak all_peaks 1.0000000000
2237 Simple_repeat 72 TE_peak all_peaks 1.0000000000
2238 Simple_repeat 87 TE_peak all_peaks 1.0000000000
2239 Simple_repeat 72 TE_peak all_peaks 1.0000000000
2240 MIR 207 TE_peak all_peaks 1.0000000000
2241 L1 69 not_TE_peak all_peaks 0.3538461538
2242 L1 13 not_TE_peak all_peaks 0.0156438026
2243 hAT-Charlie 51 not_TE_peak all_peaks 0.4112903226
2244 L2 51 TE_peak all_peaks 1.0000000000
2245 ERVL-MaLR 113 not_TE_peak all_peaks 0.3130193906
2246 MIR 103 TE_peak all_peaks 0.6732026144
2247 Gypsy? 269 TE_peak all_peaks 0.8053892216
2248 MIR 101 TE_peak all_peaks 0.6644736842
2249 <NA> NA not_TE_peak all_peaks NA
2250 ERVL-MaLR 179 not_TE_peak all_peaks 0.4124423963
2251 hAT-Tip100 48 not_TE_peak all_peaks 0.2962962963
2252 MIR 209 TE_peak all_peaks 1.0000000000
2253 CR1 316 TE_peak all_peaks 0.9844236760
2254 Alu 244 TE_peak all_peaks 0.7896440129
2255 L1 90 TE_peak all_peaks 1.0000000000
2256 Alu 66 not_TE_peak all_peaks 0.2115384615
2257 L2 277 TE_peak all_peaks 1.0000000000
2258 <NA> NA not_TE_peak all_peaks NA
2259 L2 69 TE_peak all_peaks 1.0000000000
2260 hAT 44 TE_peak all_peaks 0.5000000000
2261 <NA> NA not_TE_peak all_peaks NA
2262 MIR 50 not_TE_peak all_peaks 0.4000000000
2263 <NA> NA not_TE_peak all_peaks NA
2264 MIR 123 TE_peak all_peaks 0.6577540107
2265 Simple_repeat 26 TE_peak all_peaks 1.0000000000
2266 <NA> NA not_TE_peak all_peaks NA
2267 <NA> NA not_TE_peak all_peaks NA
2268 <NA> NA not_TE_peak all_peaks NA
2269 <NA> NA not_TE_peak all_peaks NA
2270 <NA> NA not_TE_peak all_peaks NA
2271 <NA> NA not_TE_peak all_peaks NA
2272 <NA> NA not_TE_peak all_peaks NA
2273 <NA> NA not_TE_peak all_peaks NA
2274 L2 181 TE_peak all_peaks 0.9187817259
2275 Alu 29 not_TE_peak all_peaks 0.0989761092
2276 Alu 135 not_TE_peak all_peaks 0.4720279720
2277 Simple_repeat 68 TE_peak all_peaks 1.0000000000
2278 <NA> NA not_TE_peak all_peaks NA
2279 hAT-Charlie 282 TE_peak all_peaks 1.0000000000
2280 Alu 156 TE_peak all_peaks 0.5270270270
2281 hAT-Tip100 130 TE_peak all_peaks 1.0000000000
2282 Alu 61 TE_peak all_peaks 1.0000000000
2283 Alu 95 not_TE_peak all_peaks 0.3104575163
2284 <NA> NA not_TE_peak all_peaks NA
2285 <NA> NA not_TE_peak all_peaks NA
2286 <NA> NA not_TE_peak all_peaks NA
2287 L1 63 TE_peak all_peaks 1.0000000000
2288 Alu 103 TE_peak all_peaks 0.7357142857
2289 Simple_repeat 31 TE_peak all_peaks 1.0000000000
2290 MIR 116 TE_peak all_peaks 1.0000000000
2291 L1 158 TE_peak all_peaks 0.5302013423
2292 <NA> NA not_TE_peak all_peaks NA
2293 <NA> NA not_TE_peak all_peaks NA
2294 MIR 106 TE_peak all_peaks 1.0000000000
2295 <NA> NA not_TE_peak all_peaks NA
2296 <NA> NA not_TE_peak all_peaks NA
2297 MIR 159 TE_peak all_peaks 1.0000000000
2298 L2 211 TE_peak all_peaks 0.6452599388
2299 Simple_repeat 34 TE_peak all_peaks 1.0000000000
2300 MIR 118 TE_peak all_peaks 0.7468354430
2301 <NA> NA not_TE_peak all_peaks NA
2302 <NA> NA not_TE_peak all_peaks NA
2303 MIR 46 not_TE_peak all_peaks 0.2613636364
2304 MIR 58 not_TE_peak all_peaks 0.3625000000
2305 TcMar-Tigger 276 TE_peak all_peaks 0.5287356322
2306 Alu 18 not_TE_peak all_peaks 0.0640569395
2307 <NA> NA not_TE_peak all_peaks NA
2308 <NA> NA not_TE_peak all_peaks NA
2309 Alu 47 not_TE_peak all_peaks 0.1593220339
2310 <NA> NA not_TE_peak all_peaks NA
2311 Simple_repeat 30 TE_peak all_peaks 1.0000000000
2312 hAT-Charlie 213 TE_peak all_peaks 0.9025423729
2313 Simple_repeat 44 TE_peak all_peaks 1.0000000000
2314 Alu 42 not_TE_peak all_peaks 0.1757322176
2315 Alu 32 not_TE_peak all_peaks 0.1056105611
2316 Simple_repeat 20 TE_peak all_peaks 1.0000000000
2317 Simple_repeat 119 TE_peak all_peaks 1.0000000000
2318 Simple_repeat 47 TE_peak all_peaks 1.0000000000
2319 L2 86 TE_peak all_peaks 0.5972222222
2320 Alu 110 not_TE_peak all_peaks 0.3846153846
2321 ERV1 534 TE_peak all_peaks 0.9286956522
2322 hAT-Charlie 147 TE_peak all_peaks 0.9187500000
2323 <NA> NA not_TE_peak all_peaks NA
2324 L1 181 not_TE_peak all_peaks 0.4664948454
2325 Simple_repeat 37 TE_peak all_peaks 1.0000000000
2326 L1 62 TE_peak all_peaks 1.0000000000
2327 Simple_repeat 54 TE_peak all_peaks 1.0000000000
2328 MIR 86 not_TE_peak all_peaks 0.3755458515
2329 <NA> NA not_TE_peak all_peaks NA
2330 Simple_repeat 25 TE_peak all_peaks 1.0000000000
2331 Simple_repeat 60 TE_peak all_peaks 1.0000000000
2332 Simple_repeat 38 TE_peak all_peaks 1.0000000000
2333 Simple_repeat 35 TE_peak all_peaks 1.0000000000
2334 MIR 158 TE_peak all_peaks 1.0000000000
2335 <NA> NA not_TE_peak all_peaks NA
2336 Alu 117 not_TE_peak all_peaks 0.4062500000
2337 Low_complexity 64 TE_peak all_peaks 1.0000000000
2338 <NA> NA not_TE_peak all_peaks NA
2339 MIR 27 not_TE_peak all_peaks 0.1158798283
2340 hAT-Tip100 88 TE_peak all_peaks 1.0000000000
2341 MIR 155 TE_peak all_peaks 0.9281437126
2342 Alu 9 not_TE_peak all_peaks 0.0762711864
2343 MIR 162 TE_peak all_peaks 0.7363636364
2344 Simple_repeat 32 TE_peak all_peaks 1.0000000000
2345 L2 67 TE_peak all_peaks 1.0000000000
2346 MIR 20 not_TE_peak all_peaks 0.0961538462
2347 <NA> NA not_TE_peak all_peaks NA
2348 MIR 94 TE_peak all_peaks 0.5766871166
2349 L2 451 TE_peak all_peaks 0.9761904762
2350 Simple_repeat 47 TE_peak all_peaks 0.9591836735
2351 L2 70 not_TE_peak all_peaks 0.4117647059
2352 <NA> NA not_TE_peak all_peaks NA
2353 <NA> NA not_TE_peak all_peaks NA
2354 L2 146 not_TE_peak all_peaks 0.1857506361
2355 <NA> NA not_TE_peak all_peaks NA
2356 hAT-Charlie 157 TE_peak all_peaks 1.0000000000
2357 ERVL-MaLR 53 TE_peak all_peaks 1.0000000000
2358 L2 51 TE_peak all_peaks 1.0000000000
2359 TcMar-Tigger 65 TE_peak all_peaks 1.0000000000
2360 MIR 40 not_TE_peak all_peaks 0.4878048780
2361 Low_complexity 76 TE_peak all_peaks 1.0000000000
2362 Simple_repeat 32 TE_peak all_peaks 1.0000000000
2363 Simple_repeat 113 TE_peak all_peaks 1.0000000000
2364 MIR 66 TE_peak all_peaks 1.0000000000
2365 L2 144 TE_peak all_peaks 0.6400000000
2366 <NA> NA not_TE_peak all_peaks NA
2367 MIR 42 TE_peak all_peaks 1.0000000000
2368 L2 431 TE_peak all_peaks 1.0000000000
2369 MIR 14 not_TE_peak all_peaks 0.0809248555
2370 <NA> NA not_TE_peak all_peaks NA
2371 Alu 300 TE_peak all_peaks 0.9646302251
2372 L1 87 TE_peak all_peaks 1.0000000000
2373 Alu 35 not_TE_peak all_peaks 0.1182432432
2374 MIR 113 TE_peak all_peaks 0.6975308642
2375 Simple_repeat 41 TE_peak all_peaks 1.0000000000
2376 L2 102 TE_peak all_peaks 1.0000000000
2377 Alu 158 TE_peak all_peaks 0.5266666667
2378 Alu 95 not_TE_peak all_peaks 0.3166666667
2379 L1 56 not_TE_peak all_peaks 0.2137404580
2380 ERVL 359 TE_peak all_peaks 0.7720430108
2381 MIR 152 TE_peak all_peaks 1.0000000000
2382 Alu 158 TE_peak all_peaks 1.0000000000
2383 <NA> NA not_TE_peak all_peaks NA
2384 L2 48 TE_peak all_peaks 1.0000000000
2385 Alu 69 not_TE_peak all_peaks 0.2379310345
2386 MIR 200 TE_peak all_peaks 1.0000000000
2387 MIR 48 TE_peak all_peaks 1.0000000000
2388 MIR 157 TE_peak all_peaks 0.9874213836
2389 L2 113 TE_peak all_peaks 0.8071428571
2390 hAT 29 TE_peak all_peaks 1.0000000000
2391 Alu 270 TE_peak all_peaks 0.8626198083
2392 MIR 75 not_TE_peak all_peaks 0.3605769231
2393 L2 930 TE_peak all_peaks 1.0000000000
2394 Simple_repeat 133 TE_peak all_peaks 0.7643678161
2395 MIR 61 not_TE_peak all_peaks 0.3546511628
2396 Simple_repeat 33 TE_peak all_peaks 1.0000000000
2397 L2 154 TE_peak all_peaks 1.0000000000
2398 MIR 184 TE_peak all_peaks 1.0000000000
2399 Simple_repeat 22 TE_peak all_peaks 1.0000000000
2400 ERVL-MaLR 36 not_TE_peak all_peaks 0.1055718475
2401 tRNA-RTE 76 TE_peak all_peaks 1.0000000000
2402 Simple_repeat 19 TE_peak all_peaks 1.0000000000
2403 MIR 208 TE_peak all_peaks 1.0000000000
2404 L2 454 TE_peak all_peaks 0.9007936508
2405 L2 180 not_TE_peak all_peaks 0.2137767221
2406 Low_complexity 34 TE_peak all_peaks 1.0000000000
2407 Simple_repeat 47 TE_peak all_peaks 1.0000000000
2408 Simple_repeat 179 TE_peak all_peaks 0.8026905830
2409 <NA> NA not_TE_peak all_peaks NA
2410 Simple_repeat 43 TE_peak all_peaks 1.0000000000
2411 <NA> NA not_TE_peak all_peaks NA
2412 <NA> NA not_TE_peak all_peaks NA
2413 Low_complexity 74 TE_peak all_peaks 1.0000000000
2414 L2 608 TE_peak all_peaks 0.9870129870
2415 <NA> NA not_TE_peak all_peaks NA
2416 MIR 73 TE_peak all_peaks 0.7019230769
2417 tRNA-RTE 86 TE_peak all_peaks 1.0000000000
2418 MIR 109 TE_peak all_peaks 0.5141509434
2419 MIR 18 not_TE_peak all_peaks 0.1052631579
2420 MIR 116 TE_peak all_peaks 0.8055555556
2421 Low_complexity 126 TE_peak all_peaks 1.0000000000
2422 ERVL 8 not_TE_peak all_peaks 0.0308880309
2423 ERVL-MaLR 207 TE_peak all_peaks 0.9366515837
2424 Simple_repeat 85 TE_peak all_peaks 1.0000000000
2425 MIR 52 not_TE_peak all_peaks 0.2166666667
2426 <NA> NA not_TE_peak all_peaks NA
2427 Simple_repeat 42 TE_peak all_peaks 1.0000000000
2428 Low_complexity 77 TE_peak all_peaks 1.0000000000
2429 Simple_repeat 71 TE_peak all_peaks 1.0000000000
2430 Simple_repeat 50 TE_peak all_peaks 1.0000000000
2431 <NA> NA not_TE_peak all_peaks NA
2432 Gypsy? 62 TE_peak all_peaks 1.0000000000
2433 L2 45 TE_peak all_peaks 1.0000000000
2434 L2 164 TE_peak all_peaks 0.6721311475
2435 ERVL-MaLR 98 not_TE_peak all_peaks 0.2295081967
2436 L2 247 TE_peak all_peaks 0.7993527508
2437 <NA> NA not_TE_peak all_peaks NA
2438 Simple_repeat 31 TE_peak all_peaks 1.0000000000
2439 Simple_repeat 30 TE_peak all_peaks 1.0000000000
2440 Simple_repeat 54 TE_peak all_peaks 1.0000000000
2441 L2 55 not_TE_peak all_peaks 0.3691275168
2442 <NA> NA not_TE_peak all_peaks NA
2443 <NA> NA not_TE_peak all_peaks NA
2444 ERVL-MaLR 331 TE_peak all_peaks 0.9297752809
2445 L2 73 TE_peak all_peaks 1.0000000000
2446 Simple_repeat 24 TE_peak all_peaks 1.0000000000
2447 L2 199 TE_peak all_peaks 0.7453183521
2448 MIR 72 TE_peak all_peaks 0.6260869565
2449 MIR 114 TE_peak all_peaks 1.0000000000
2450 Simple_repeat 58 TE_peak all_peaks 1.0000000000
2451 Simple_repeat 51 TE_peak all_peaks 1.0000000000
2452 MIR 149 TE_peak all_peaks 1.0000000000
2453 ERVL 216 TE_peak all_peaks 1.0000000000
2454 MIR 132 TE_peak all_peaks 0.9361702128
2455 L2 20 not_TE_peak all_peaks 0.1818181818
2456 L2 187 TE_peak all_peaks 1.0000000000
2457 L2 113 TE_peak all_peaks 1.0000000000
2458 L2 135 TE_peak all_peaks 1.0000000000
2459 MIR 70 TE_peak all_peaks 1.0000000000
2460 TcMar-Tigger 21 not_TE_peak all_peaks 0.0675241158
2461 MIR 123 TE_peak all_peaks 1.0000000000
2462 Alu 43 not_TE_peak all_peaks 0.1414473684
2463 L2 142 TE_peak all_peaks 1.0000000000
2464 L2 27 not_TE_peak all_peaks 0.2547169811
2465 L2 305 TE_peak all_peaks 0.6963470320
2466 MIR 65 not_TE_peak all_peaks 0.3779069767
2467 ERV1 223 TE_peak all_peaks 0.5126436782
2468 Low_complexity 82 TE_peak all_peaks 1.0000000000
2469 Alu 13 not_TE_peak all_peaks 0.0464285714
2470 MIR 193 TE_peak all_peaks 1.0000000000
2471 L2 99 TE_peak all_peaks 1.0000000000
2472 L2 231 TE_peak all_peaks 1.0000000000
2473 Simple_repeat 161 TE_peak all_peaks 0.8050000000
2474 MIR 208 TE_peak all_peaks 1.0000000000
2475 Alu 48 TE_peak all_peaks 1.0000000000
2476 Alu 93 TE_peak all_peaks 1.0000000000
2477 Alu 205 TE_peak all_peaks 0.9903381643
2478 Alu 297 TE_peak all_peaks 1.0000000000
2479 Alu 285 TE_peak all_peaks 0.9861591696
2480 MIR 119 TE_peak all_peaks 1.0000000000
2481 MIR 48 TE_peak all_peaks 1.0000000000
2482 Simple_repeat 123 TE_peak all_peaks 1.0000000000
2483 ERV1 515 not_TE_peak all_peaks 0.4221311475
2484 hAT-Charlie 117 not_TE_peak all_peaks 0.3323863636
2485 MIR 130 TE_peak all_peaks 1.0000000000
2486 PiggyBac 26 not_TE_peak all_peaks 0.2047244094
2487 TcMar-Tigger 299 TE_peak all_peaks 0.5128644940
2488 <NA> NA not_TE_peak all_peaks NA
2489 TcMar-Tigger 258 not_TE_peak all_peaks 0.3355006502
2490 Alu 130 TE_peak all_peaks 1.0000000000
2491 TcMar-Tigger 25 not_TE_peak all_peaks 0.0766871166
2492 TcMar-Tigger 232 TE_peak all_peaks 1.0000000000
2493 TcMar-Tigger 32 not_TE_peak all_peaks 0.3368421053
2494 Simple_repeat 16 not_TE_peak all_peaks 0.0423280423
2495 Alu 4 not_TE_peak all_peaks 0.0139860140
2496 Alu 78 not_TE_peak all_peaks 0.2516129032
2497 <NA> NA not_TE_peak all_peaks NA
2498 ERV1 133 TE_peak all_peaks 0.7388888889
2499 ERV1 1110 TE_peak all_peaks 0.9866666667
2500 ERV1 11 not_TE_peak all_peaks 0.1571428571
2501 hAT-Charlie 221 TE_peak all_peaks 0.9608695652
2502 Alu 99 TE_peak all_peaks 0.5076923077
2503 MIR 232 TE_peak all_peaks 1.0000000000
2504 Alu 323 TE_peak all_peaks 1.0000000000
2505 Alu 96 TE_peak all_peaks 0.6233766234
2506 Simple_repeat 31 TE_peak all_peaks 1.0000000000
2507 Alu 150 TE_peak all_peaks 1.0000000000
2508 <NA> NA not_TE_peak all_peaks NA
2509 Alu 172 TE_peak all_peaks 1.0000000000
2510 hAT-Charlie 236 TE_peak all_peaks 1.0000000000
2511 Alu 107 TE_peak all_peaks 0.6564417178
2512 Simple_repeat 1 not_TE_peak all_peaks 0.0185185185
2513 Simple_repeat 44 TE_peak all_peaks 1.0000000000
2514 MIR 113 TE_peak all_peaks 0.7635135135
2515 Alu 40 not_TE_peak all_peaks 0.1311475410
2516 MIR 98 TE_peak all_peaks 1.0000000000
2517 MIR 150 TE_peak all_peaks 1.0000000000
2518 Alu 118 not_TE_peak all_peaks 0.4338235294
2519 Alu 98 not_TE_peak all_peaks 0.3288590604
2520 L1 52 TE_peak all_peaks 1.0000000000
2521 ERVL 254 TE_peak all_peaks 1.0000000000
2522 Alu 135 not_TE_peak all_peaks 0.4655172414
2523 <NA> NA not_TE_peak all_peaks NA
2524 <NA> NA not_TE_peak all_peaks NA
2525 Alu 117 not_TE_peak all_peaks 0.3861386139
2526 Alu 50 TE_peak all_peaks 0.5681818182
2527 MIR 104 TE_peak all_peaks 0.5048543689
2528 MIR 143 TE_peak all_peaks 0.6875000000
2529 <NA> NA not_TE_peak all_peaks NA
2530 <NA> NA not_TE_peak all_peaks NA
2531 L2 44 not_TE_peak all_peaks 0.3636363636
2532 L2 298 TE_peak all_peaks 1.0000000000
2533 <NA> NA not_TE_peak all_peaks NA
2534 MIR 83 TE_peak all_peaks 0.5724137931
2535 MIR 238 TE_peak all_peaks 1.0000000000
2536 Simple_repeat 33 TE_peak all_peaks 1.0000000000
2537 MIR 159 TE_peak all_peaks 1.0000000000
2538 MIR 34 not_TE_peak all_peaks 0.1511111111
2539 L2 158 TE_peak all_peaks 1.0000000000
2540 hAT-Blackjack 87 TE_peak all_peaks 1.0000000000
2541 Simple_repeat 35 TE_peak all_peaks 1.0000000000
2542 Simple_repeat 45 TE_peak all_peaks 1.0000000000
2543 MIR 205 TE_peak all_peaks 1.0000000000
2544 Alu 59 not_TE_peak all_peaks 0.4436090226
2545 Alu 165 TE_peak all_peaks 0.5305466238
2546 <NA> NA not_TE_peak all_peaks NA
2547 MIR 235 TE_peak all_peaks 1.0000000000
2548 hAT-Charlie 30 not_TE_peak all_peaks 0.4761904762
2549 MIR 221 TE_peak all_peaks 1.0000000000
2550 Simple_repeat 34 TE_peak all_peaks 1.0000000000
2551 Alu 90 TE_peak all_peaks 0.5325443787
2552 MIR 213 TE_peak all_peaks 1.0000000000
2553 MIR 191 TE_peak all_peaks 1.0000000000
2554 <NA> NA not_TE_peak all_peaks NA
2555 MIR 188 TE_peak all_peaks 0.9641025641
2556 Alu 99 TE_peak all_peaks 0.5625000000
2557 <NA> NA not_TE_peak all_peaks NA
2558 MIR 249 TE_peak all_peaks 0.9920318725
2559 MIR 3 not_TE_peak all_peaks 0.0186335404
2560 L2 85 not_TE_peak all_peaks 0.3541666667
2561 Simple_repeat 80 TE_peak all_peaks 1.0000000000
2562 Simple_repeat 36 TE_peak all_peaks 1.0000000000
2563 Simple_repeat 22 TE_peak all_peaks 1.0000000000
2564 Simple_repeat 10 not_TE_peak all_peaks 0.1052631579
2565 CR1 30 not_TE_peak all_peaks 0.2027027027
2566 Alu 49 not_TE_peak all_peaks 0.1649831650
2567 Simple_repeat 41 TE_peak all_peaks 1.0000000000
2568 CR1 75 TE_peak all_peaks 1.0000000000
2569 L2 169 TE_peak all_peaks 1.0000000000
2570 MIR 158 TE_peak all_peaks 0.8926553672
2571 Alu 1 not_TE_peak all_peaks 0.0037878788
2572 L1 102 TE_peak all_peaks 0.8160000000
2573 ERV1 161 TE_peak all_peaks 1.0000000000
2574 Alu 290 TE_peak all_peaks 1.0000000000
2575 ERV1 49 TE_peak all_peaks 1.0000000000
2576 Simple_repeat 1 not_TE_peak all_peaks 0.0090090090
2577 Simple_repeat 31 TE_peak all_peaks 1.0000000000
2578 Low_complexity 12 not_TE_peak all_peaks 0.3750000000
2579 CR1 10 not_TE_peak all_peaks 0.1388888889
2580 ERVL 85 TE_peak all_peaks 1.0000000000
2581 MIR 121 TE_peak all_peaks 1.0000000000
2582 ERV1 711 TE_peak all_peaks 0.7571884984
2583 MIR 80 TE_peak all_peaks 0.5839416058
2584 L2 75 TE_peak all_peaks 0.6944444444
2585 MIR 16 not_TE_peak all_peaks 0.0846560847
2586 Alu 31 not_TE_peak all_peaks 0.2262773723
2587 Simple_repeat 136 TE_peak all_peaks 1.0000000000
2588 Low_complexity 26 not_TE_peak all_peaks 0.3170731707
2589 MIR 109 TE_peak all_peaks 1.0000000000
2590 MIR 38 not_TE_peak all_peaks 0.2695035461
2591 Alu 246 TE_peak all_peaks 0.8200000000
2592 MIR 140 TE_peak all_peaks 0.8139534884
2593 L2 242 TE_peak all_peaks 1.0000000000
2594 MIR 67 TE_peak all_peaks 0.5317460317
2595 MIR 112 TE_peak all_peaks 1.0000000000
2596 Alu 39 not_TE_peak all_peaks 0.3046875000
2597 L1 21 not_TE_peak all_peaks 0.1039603960
2598 L2 102 TE_peak all_peaks 1.0000000000
2599 MIR 46 not_TE_peak all_peaks 0.1803921569
2600 <NA> NA not_TE_peak all_peaks NA
2601 MIR 198 TE_peak all_peaks 1.0000000000
2602 MIR 72 not_TE_peak all_peaks 0.2938775510
2603 Alu 60 not_TE_peak all_peaks 0.2000000000
2604 MIR 185 TE_peak all_peaks 0.7838983051
2605 Low_complexity 36 TE_peak all_peaks 1.0000000000
2606 MIR 66 not_TE_peak all_peaks 0.2907488987
2607 Low_complexity 51 TE_peak all_peaks 1.0000000000
2608 L2 58 TE_peak all_peaks 0.9062500000
2609 <NA> NA not_TE_peak all_peaks NA
2610 L2 31 not_TE_peak all_peaks 0.3780487805
2611 Simple_repeat 87 TE_peak all_peaks 1.0000000000
2612 Simple_repeat 36 not_TE_peak all_peaks 0.4137931034
2613 Simple_repeat 76 TE_peak all_peaks 0.9870129870
2614 Simple_repeat 66 TE_peak all_peaks 1.0000000000
2615 MIR 56 TE_peak all_peaks 0.6913580247
2616 MIR 40 not_TE_peak all_peaks 0.2547770701
2617 MIR 124 TE_peak all_peaks 1.0000000000
2618 MIR 199 TE_peak all_peaks 0.8468085106
2619 Alu 64 not_TE_peak all_peaks 0.2064516129
2620 L1 147 TE_peak all_peaks 1.0000000000
2621 MIR 222 TE_peak all_peaks 1.0000000000
2622 MIR 165 TE_peak all_peaks 0.9880239521
2623 MIR 213 TE_peak all_peaks 1.0000000000
2624 MIR 58 not_TE_peak all_peaks 0.4715447154
2625 Simple_repeat 34 TE_peak all_peaks 1.0000000000
2626 Simple_repeat 28 TE_peak all_peaks 1.0000000000
2627 Simple_repeat 37 TE_peak all_peaks 1.0000000000
2628 Simple_repeat 19 TE_peak all_peaks 1.0000000000
2629 Simple_repeat 77 TE_peak all_peaks 1.0000000000
2630 Simple_repeat 35 TE_peak all_peaks 1.0000000000
2631 Low_complexity 20 not_TE_peak all_peaks 0.2941176471
2632 MIR 33 not_TE_peak all_peaks 0.3173076923
2633 Alu 87 not_TE_peak all_peaks 0.3307984791
2634 MIR 83 TE_peak all_peaks 1.0000000000
2635 MIR 140 TE_peak all_peaks 1.0000000000
2636 Simple_repeat 27 TE_peak all_peaks 1.0000000000
2637 Simple_repeat 54 TE_peak all_peaks 1.0000000000
2638 Simple_repeat 25 TE_peak all_peaks 1.0000000000
2639 MIR 123 TE_peak all_peaks 1.0000000000
2640 MIR 19 not_TE_peak all_peaks 0.3518518519
2641 Alu 242 TE_peak all_peaks 0.8521126761
2642 <NA> NA not_TE_peak all_peaks NA
2643 <NA> NA not_TE_peak all_peaks NA
2644 <NA> NA not_TE_peak all_peaks NA
2645 Alu 37 not_TE_peak all_peaks 0.1396226415
2646 ERVL 288 TE_peak all_peaks 1.0000000000
2647 Simple_repeat 35 TE_peak all_peaks 1.0000000000
2648 MIR 72 TE_peak all_peaks 1.0000000000
2649 Alu 10 not_TE_peak all_peaks 0.0335570470
2650 ERV1 164 not_TE_peak all_peaks 0.3065420561
2651 Alu 45 not_TE_peak all_peaks 0.1757812500
2652 MIR 20 not_TE_peak all_peaks 0.1351351351
2653 MIR 179 TE_peak all_peaks 1.0000000000
2654 Alu 149 TE_peak all_peaks 1.0000000000
2655 Simple_repeat 39 TE_peak all_peaks 1.0000000000
2656 MIR 37 not_TE_peak all_peaks 0.1978609626
2657 Alu 78 TE_peak all_peaks 0.6093750000
2658 L2 461 TE_peak all_peaks 0.8882466281
2659 Low_complexity 34 TE_peak all_peaks 1.0000000000
2660 <NA> NA not_TE_peak all_peaks NA
2661 MIR 70 TE_peak all_peaks 1.0000000000
2662 Alu 183 TE_peak all_peaks 0.5903225806
2663 MIR 132 TE_peak all_peaks 1.0000000000
2664 MIR 88 TE_peak all_peaks 1.0000000000
2665 Alu 183 TE_peak all_peaks 0.6310344828
2666 L2 246 TE_peak all_peaks 0.5394736842
2667 L2 1 not_TE_peak all_peaks 0.0042918455
2668 L2 222 TE_peak all_peaks 1.0000000000
2669 L2 50 not_TE_peak all_peaks 0.3571428571
2670 L1 158 TE_peak all_peaks 1.0000000000
2671 Alu 219 TE_peak all_peaks 0.7019230769
2672 ERVL-MaLR 94 not_TE_peak all_peaks 0.4454976303
2673 ERVL-MaLR 120 TE_peak all_peaks 0.8888888889
2674 <NA> NA not_TE_peak all_peaks NA
2675 MIR 181 TE_peak all_peaks 1.0000000000
2676 ERVL 267 TE_peak all_peaks 1.0000000000
2677 MIR 146 TE_peak all_peaks 1.0000000000
2678 L2 132 TE_peak all_peaks 0.8859060403
2679 <NA> NA not_TE_peak all_peaks NA
2680 hAT-Charlie 70 TE_peak all_peaks 1.0000000000
2681 TcMar-Mariner 55 TE_peak all_peaks 1.0000000000
2682 hAT-Charlie 77 TE_peak all_peaks 1.0000000000
2683 CR1 19 not_TE_peak all_peaks 0.1085714286
2684 Simple_repeat 34 TE_peak all_peaks 1.0000000000
2685 <NA> NA not_TE_peak all_peaks NA
2686 Simple_repeat 6 not_TE_peak all_peaks 0.0810810811
2687 L2 83 TE_peak all_peaks 1.0000000000
2688 Simple_repeat 54 TE_peak all_peaks 1.0000000000
2689 L2 33 TE_peak all_peaks 1.0000000000
2690 Simple_repeat 15 not_TE_peak all_peaks 0.3409090909
2691 <NA> NA not_TE_peak all_peaks NA
2692 Simple_repeat 38 not_TE_peak all_peaks 0.3838383838
2693 MIR 19 TE_peak all_peaks 0.9500000000
2694 MIR 39 TE_peak all_peaks 1.0000000000
2695 hAT-Charlie 163 TE_peak all_peaks 1.0000000000
2696 MIR 50 TE_peak all_peaks 1.0000000000
2697 Alu 48 not_TE_peak all_peaks 0.1632653061
2698 MIR 134 TE_peak all_peaks 0.9115646259
2699 Simple_repeat 32 TE_peak all_peaks 1.0000000000
2700 MIR 139 TE_peak all_peaks 1.0000000000
2701 L2 165 TE_peak all_peaks 0.7432432432
2702 L2 403 not_TE_peak all_peaks 0.4780545670
2703 Alu 44 not_TE_peak all_peaks 0.1476510067
2704 <NA> NA not_TE_peak all_peaks NA
2705 L2 179 TE_peak all_peaks 1.0000000000
2706 L2 64 TE_peak all_peaks 1.0000000000
2707 MIR 107 TE_peak all_peaks 1.0000000000
2708 Simple_repeat 48 TE_peak all_peaks 1.0000000000
2709 Low_complexity 60 TE_peak all_peaks 1.0000000000
2710 <NA> NA not_TE_peak all_peaks NA
2711 hAT-Charlie 138 not_TE_peak all_peaks 0.4791666667
2712 Alu 298 TE_peak all_peaks 1.0000000000
2713 hAT-Charlie 266 TE_peak all_peaks 1.0000000000
2714 Alu 69 not_TE_peak all_peaks 0.2254901961
2715 <NA> NA not_TE_peak all_peaks NA
2716 MIR 123 TE_peak all_peaks 1.0000000000
2717 MIR 21 not_TE_peak all_peaks 0.2876712329
2718 L2 47 TE_peak all_peaks 1.0000000000
2719 Alu 64 not_TE_peak all_peaks 0.2133333333
2720 ERVL 154 not_TE_peak all_peaks 0.4031413613
2721 Alu 222 TE_peak all_peaks 0.7576791809
2722 Alu 38 not_TE_peak all_peaks 0.1245901639
2723 MIR 76 TE_peak all_peaks 1.0000000000
2724 hAT-Tip100 134 TE_peak all_peaks 1.0000000000
2725 ERVL 382 TE_peak all_peaks 1.0000000000
2726 Alu 57 not_TE_peak all_peaks 0.1850649351
2727 Alu 24 not_TE_peak all_peaks 0.0781758958
2728 MIR 76 TE_peak all_peaks 1.0000000000
2729 hAT-Tip100 134 TE_peak all_peaks 1.0000000000
2730 MIR 62 not_TE_peak all_peaks 0.3712574850
2731 <NA> NA not_TE_peak all_peaks NA
2732 Alu 5 not_TE_peak all_peaks 0.0176056338
2733 MIR 129 TE_peak all_peaks 1.0000000000
2734 MIR 180 TE_peak all_peaks 1.0000000000
2735 Alu 28 not_TE_peak all_peaks 0.0952380952
2736 Alu 5 not_TE_peak all_peaks 0.0160256410
2737 Simple_repeat 31 TE_peak all_peaks 1.0000000000
2738 MIR 68 TE_peak all_peaks 1.0000000000
2739 Alu 60 not_TE_peak all_peaks 0.1967213115
2740 MIR 54 TE_peak all_peaks 1.0000000000
2741 Simple_repeat 61 TE_peak all_peaks 1.0000000000
2742 Simple_repeat 28 TE_peak all_peaks 1.0000000000
2743 <NA> NA not_TE_peak all_peaks NA
2744 <NA> NA not_TE_peak all_peaks NA
2745 Alu 113 not_TE_peak all_peaks 0.4035714286
2746 MIR 117 TE_peak all_peaks 0.8125000000
2747 Low_complexity 75 TE_peak all_peaks 1.0000000000
2748 MIR 46 TE_peak all_peaks 0.7301587302
2749 MIR 178 TE_peak all_peaks 0.8640776699
2750 <NA> NA not_TE_peak all_peaks NA
2751 <NA> NA not_TE_peak all_peaks NA
2752 MIR 171 TE_peak all_peaks 1.0000000000
2753 MIR 25 not_TE_peak all_peaks 0.1785714286
2754 MIR 28 not_TE_peak all_peaks 0.1497326203
2755 MIR 125 TE_peak all_peaks 1.0000000000
2756 MIR 94 TE_peak all_peaks 1.0000000000
2757 L2 2 not_TE_peak all_peaks 0.0357142857
2758 Simple_repeat 43 TE_peak all_peaks 1.0000000000
2759 Simple_repeat 6 not_TE_peak all_peaks 0.1500000000
2760 Simple_repeat 37 TE_peak all_peaks 1.0000000000
2761 Simple_repeat 41 TE_peak all_peaks 1.0000000000
2762 MIR 135 TE_peak all_peaks 1.0000000000
2763 L2 337 TE_peak all_peaks 0.7556053812
2764 ERVL-MaLR 38 not_TE_peak all_peaks 0.0820734341
2765 <NA> NA not_TE_peak all_peaks NA
2766 MIR 68 not_TE_peak all_peaks 0.2833333333
2767 L1 161 not_TE_peak all_peaks 0.4327956989
2768 MIR 60 not_TE_peak all_peaks 0.2620087336
2769 Simple_repeat 25 TE_peak all_peaks 1.0000000000
2770 ERVL 89 TE_peak all_peaks 0.5779220779
2771 Alu 125 TE_peak all_peaks 1.0000000000
2772 MIR 242 TE_peak all_peaks 0.9641434263
2773 MIR 131 TE_peak all_peaks 0.8187500000
2774 MIR 187 TE_peak all_peaks 0.8779342723
2775 MIR 16 not_TE_peak all_peaks 0.1118881119
2776 Alu 151 TE_peak all_peaks 1.0000000000
2777 MIR 112 TE_peak all_peaks 0.6473988439
2778 Simple_repeat 67 not_TE_peak all_peaks 0.2851063830
2779 MIR 145 TE_peak all_peaks 0.7073170732
2780 MIR 220 TE_peak all_peaks 0.9649122807
2781 <NA> NA not_TE_peak all_peaks NA
2782 L2 83 not_TE_peak all_peaks 0.4770114943
2783 MIR 12 not_TE_peak all_peaks 0.0502092050
2784 L2 71 TE_peak all_peaks 1.0000000000
2785 L2 101 TE_peak all_peaks 1.0000000000
2786 MIR 52 TE_peak all_peaks 1.0000000000
2787 hAT-Tip100 166 TE_peak all_peaks 1.0000000000
2788 L2 462 not_TE_peak all_peaks 0.4560710760
2789 MIR 90 TE_peak all_peaks 0.8737864078
2790 Low_complexity 25 TE_peak all_peaks 0.5952380952
2791 MIR 61 not_TE_peak all_peaks 0.3112244898
2792 MIR 117 TE_peak all_peaks 0.7852348993
2793 Simple_repeat 40 TE_peak all_peaks 1.0000000000
2794 Low_complexity 42 TE_peak all_peaks 1.0000000000
2795 MIR 65 TE_peak all_peaks 1.0000000000
2796 MIR 147 TE_peak all_peaks 0.8258426966
2797 MIR 99 TE_peak all_peaks 0.6000000000
2798 L2 139 TE_peak all_peaks 1.0000000000
2799 Simple_repeat 46 TE_peak all_peaks 1.0000000000
2800 MIR 228 TE_peak all_peaks 0.9047619048
2801 MIR 12 not_TE_peak all_peaks 0.0502092050
2802 L2 18 not_TE_peak all_peaks 0.0511363636
2803 hAT-Charlie 320 TE_peak all_peaks 1.0000000000
2804 ERV1 578 TE_peak all_peaks 0.5774225774
2805 LTR? 96 not_TE_peak all_peaks 0.4120171674
2806 MIR 205 TE_peak all_peaks 1.0000000000
2807 ERVL 217 not_TE_peak all_peaks 0.4401622718
2808 L2 265 not_TE_peak all_peaks 0.3967065868
2809 L2 630 not_TE_peak all_peaks 0.4992076070
2810 L2 181 TE_peak all_peaks 1.0000000000
2811 <NA> NA not_TE_peak all_peaks NA
2812 <NA> NA not_TE_peak all_peaks NA
2813 Low_complexity 50 TE_peak all_peaks 1.0000000000
2814 Simple_repeat 29 TE_peak all_peaks 1.0000000000
2815 <NA> NA not_TE_peak all_peaks NA
2816 L1 11 not_TE_peak all_peaks 0.0355987055
2817 L2 93 TE_peak all_peaks 1.0000000000
2818 MIR 103 TE_peak all_peaks 0.5364583333
2819 <NA> NA not_TE_peak all_peaks NA
2820 MIR 47 not_TE_peak all_peaks 0.2540540541
2821 Simple_repeat 35 TE_peak all_peaks 1.0000000000
2822 <NA> NA not_TE_peak all_peaks NA
2823 ERVL-MaLR 181 TE_peak all_peaks 1.0000000000
2824 MIR 103 TE_peak all_peaks 1.0000000000
2825 <NA> NA not_TE_peak all_peaks NA
2826 L2 153 not_TE_peak all_peaks 0.4693251534
2827 tRNA-RTE 71 not_TE_peak all_peaks 0.3879781421
2828 MIR 10 not_TE_peak all_peaks 0.0396825397
2829 MIR 35 not_TE_peak all_peaks 0.1804123711
2830 Simple_repeat 775 TE_peak all_peaks 0.6652360515
2831 <NA> NA not_TE_peak all_peaks NA
2832 MIR 23 not_TE_peak all_peaks 0.2300000000
2833 MIR 197 TE_peak all_peaks 0.9292452830
2834 L1 61 not_TE_peak all_peaks 0.2293233083
2835 <NA> NA not_TE_peak all_peaks NA
2836 Low_complexity 79 TE_peak all_peaks 1.0000000000
2837 MIR 245 TE_peak all_peaks 1.0000000000
2838 <NA> NA not_TE_peak all_peaks NA
2839 Alu 325 TE_peak all_peaks 1.0000000000
2840 <NA> NA not_TE_peak all_peaks NA
2841 hAT-Charlie 228 TE_peak all_peaks 1.0000000000
2842 MIR 228 TE_peak all_peaks 1.0000000000
2843 hAT-Charlie 178 TE_peak all_peaks 1.0000000000
2844 MIR 10 not_TE_peak all_peaks 0.1176470588
2845 <NA> NA not_TE_peak all_peaks NA
2846 <NA> NA not_TE_peak all_peaks NA
2847 <NA> NA not_TE_peak all_peaks NA
2848 <NA> NA not_TE_peak all_peaks NA
2849 <NA> NA not_TE_peak all_peaks NA
2850 MIR 46 not_TE_peak all_peaks 0.1811023622
2851 <NA> NA not_TE_peak all_peaks NA
2852 MIR 144 TE_peak all_peaks 1.0000000000
2853 Simple_repeat 45 TE_peak all_peaks 1.0000000000
2854 L2 117 TE_peak all_peaks 1.0000000000
2855 MIR 39 not_TE_peak all_peaks 0.1780821918
2856 <NA> NA not_TE_peak all_peaks NA
2857 MIR 173 TE_peak all_peaks 1.0000000000
2858 MIR 42 TE_peak all_peaks 1.0000000000
2859 L2 47 TE_peak all_peaks 0.6619718310
2860 MIR 156 TE_peak all_peaks 1.0000000000
2861 MIR 215 TE_peak all_peaks 1.0000000000
2862 Simple_repeat 32 TE_peak all_peaks 0.8000000000
2863 MIR 60 TE_peak all_peaks 1.0000000000
2864 MIR 30 not_TE_peak all_peaks 0.1219512195
2865 ERVL-MaLR 205 TE_peak all_peaks 0.7347670251
2866 MIR 94 TE_peak all_peaks 1.0000000000
2867 L2 163 TE_peak all_peaks 1.0000000000
2868 MIR 225 TE_peak all_peaks 1.0000000000
2869 MIR 31 not_TE_peak all_peaks 0.1712707182
2870 MIR 127 TE_peak all_peaks 1.0000000000
2871 MIR 63 not_TE_peak all_peaks 0.3247422680
2872 L2 343 not_TE_peak all_peaks 0.4978229318
2873 Alu 163 TE_peak all_peaks 0.5309446254
2874 Alu 286 TE_peak all_peaks 1.0000000000
2875 hAT-Charlie 22 not_TE_peak all_peaks 0.1896551724
2876 MIR 219 TE_peak all_peaks 1.0000000000
2877 <NA> NA not_TE_peak all_peaks NA
2878 Low_complexity 77 TE_peak all_peaks 1.0000000000
2879 MIR 196 TE_peak all_peaks 1.0000000000
2880 L2 20 not_TE_peak all_peaks 0.2941176471
2881 MIR 84 TE_peak all_peaks 1.0000000000
2882 hAT-Charlie 85 not_TE_peak all_peaks 0.4381443299
2883 Simple_repeat 41 TE_peak all_peaks 1.0000000000
2884 MIR 122 TE_peak all_peaks 1.0000000000
2885 hAT-Tip100 56 TE_peak all_peaks 1.0000000000
2886 <NA> NA not_TE_peak all_peaks NA
2887 Alu 71 not_TE_peak all_peaks 0.2343234323
2888 ERVL-MaLR 247 TE_peak all_peaks 0.6977401130
2889 L1 167 TE_peak all_peaks 1.0000000000
2890 MIR 206 TE_peak all_peaks 1.0000000000
2891 L2 47 TE_peak all_peaks 1.0000000000
2892 MIR 94 TE_peak all_peaks 1.0000000000
2893 L2 68 TE_peak all_peaks 1.0000000000
2894 MIR 52 not_TE_peak all_peaks 0.2212765957
2895 Alu 156 TE_peak all_peaks 0.5234899329
2896 L1 15 TE_peak all_peaks 1.0000000000
2897 Simple_repeat 32 TE_peak all_peaks 1.0000000000
2898 L2 69 TE_peak all_peaks 1.0000000000
2899 L2 168 TE_peak all_peaks 1.0000000000
2900 Alu 44 not_TE_peak all_peaks 0.2993197279
2901 L2 103 TE_peak all_peaks 1.0000000000
2902 Simple_repeat 74 TE_peak all_peaks 1.0000000000
2903 Simple_repeat 55 TE_peak all_peaks 1.0000000000
2904 <NA> NA not_TE_peak all_peaks NA
2905 <NA> NA not_TE_peak all_peaks NA
2906 <NA> NA not_TE_peak all_peaks NA
2907 L2 181 TE_peak all_peaks 0.7702127660
2908 Alu 86 not_TE_peak all_peaks 0.3071428571
2909 L2 61 not_TE_peak all_peaks 0.0911808670
2910 L2 177 not_TE_peak all_peaks 0.4244604317
2911 hAT-Charlie 74 not_TE_peak all_peaks 0.3718592965
2912 hAT-Charlie 155 TE_peak all_peaks 1.0000000000
2913 Alu 49 not_TE_peak all_peaks 0.4152542373
2914 Alu 111 not_TE_peak all_peaks 0.3762711864
2915 CR1 37 TE_peak all_peaks 1.0000000000
2916 CR1 100 TE_peak all_peaks 1.0000000000
2917 <NA> NA not_TE_peak all_peaks NA
2918 MIR 38 not_TE_peak all_peaks 0.3275862069
2919 MIR 54 not_TE_peak all_peaks 0.3673469388
2920 Alu 178 TE_peak all_peaks 0.6520146520
2921 Alu 68 not_TE_peak all_peaks 0.4473684211
2922 <NA> NA not_TE_peak all_peaks NA
2923 <NA> NA not_TE_peak all_peaks NA
2924 <NA> NA not_TE_peak all_peaks NA
2925 <NA> NA not_TE_peak all_peaks NA
2926 Low_complexity 44 TE_peak all_peaks 1.0000000000
2927 L1 65 not_TE_peak all_peaks 0.1825842697
2928 Alu 260 TE_peak all_peaks 1.0000000000
2929 Alu 95 not_TE_peak all_peaks 0.3275862069
2930 Simple_repeat 110 TE_peak all_peaks 1.0000000000
2931 Simple_repeat 44 TE_peak all_peaks 1.0000000000
2932 hAT-Charlie 26 not_TE_peak all_peaks 0.1925925926
2933 MIR 123 TE_peak all_peaks 1.0000000000
2934 MIR 83 TE_peak all_peaks 1.0000000000
2935 MIR 222 TE_peak all_peaks 1.0000000000
2936 L2 63 TE_peak all_peaks 1.0000000000
2937 CR1 93 TE_peak all_peaks 0.8454545455
2938 Simple_repeat 40 TE_peak all_peaks 1.0000000000
2939 Alu 220 TE_peak all_peaks 1.0000000000
2940 L2 43 not_TE_peak all_peaks 0.2457142857
2941 Alu 181 TE_peak all_peaks 1.0000000000
2942 Alu 126 not_TE_peak all_peaks 0.4256756757
2943 MIR 12 not_TE_peak all_peaks 0.0625000000
2944 Alu 14 not_TE_peak all_peaks 0.0472972973
2945 L2 96 not_TE_peak all_peaks 0.3555555556
2946 L2 289 TE_peak all_peaks 1.0000000000
2947 Alu 4 not_TE_peak all_peaks 0.0130293160
2948 Simple_repeat 82 TE_peak all_peaks 1.0000000000
2949 Simple_repeat 64 TE_peak all_peaks 1.0000000000
2950 L2 30 not_TE_peak all_peaks 0.1045296167
2951 MIR 75 TE_peak all_peaks 1.0000000000
2952 Simple_repeat 30 TE_peak all_peaks 1.0000000000
2953 Low_complexity 39 TE_peak all_peaks 1.0000000000
2954 L2 140 TE_peak all_peaks 1.0000000000
2955 MIR 50 TE_peak all_peaks 1.0000000000
2956 Alu 96 TE_peak all_peaks 0.5517241379
2957 MIR 89 TE_peak all_peaks 1.0000000000
2958 TcMar-Tigger 197 TE_peak all_peaks 1.0000000000
2959 TcMar-Tigger 118 TE_peak all_peaks 1.0000000000
2960 hAT-Charlie 454 TE_peak all_peaks 0.8747591522
2961 Simple_repeat 171 TE_peak all_peaks 1.0000000000
2962 MIR 204 TE_peak all_peaks 1.0000000000
2963 MIR 182 TE_peak all_peaks 1.0000000000
2964 hAT-Charlie 139 TE_peak all_peaks 1.0000000000
2965 MIR 137 TE_peak all_peaks 1.0000000000
2966 TcMar-Tigger 126 TE_peak all_peaks 1.0000000000
2967 L1 105 TE_peak all_peaks 1.0000000000
2968 L2 336 TE_peak all_peaks 0.7044025157
2969 Simple_repeat 30 TE_peak all_peaks 1.0000000000
2970 MIR 41 not_TE_peak all_peaks 0.2265193370
2971 MIR 146 TE_peak all_peaks 0.5703125000
2972 RTE-BovB 107 TE_peak all_peaks 1.0000000000
2973 L2 48 not_TE_peak all_peaks 0.1714285714
2974 ERV1 552 TE_peak all_peaks 1.0000000000
2975 Simple_repeat 51 TE_peak all_peaks 0.9107142857
2976 L2 114 TE_peak all_peaks 1.0000000000
2977 <NA> NA not_TE_peak all_peaks NA
2978 MIR 132 TE_peak all_peaks 1.0000000000
2979 Simple_repeat 121 TE_peak all_peaks 1.0000000000
2980 Simple_repeat 36 TE_peak all_peaks 1.0000000000
2981 Simple_repeat 32 TE_peak all_peaks 1.0000000000
2982 Simple_repeat 48 TE_peak all_peaks 1.0000000000
2983 Alu 23 not_TE_peak all_peaks 0.0712074303
2984 Alu 142 TE_peak all_peaks 1.0000000000
2985 MIR 87 TE_peak all_peaks 0.7981651376
2986 <NA> NA not_TE_peak all_peaks NA
2987 Alu 43 not_TE_peak all_peaks 0.1373801917
2988 MIR 45 TE_peak all_peaks 1.0000000000
2989 L2 66 TE_peak all_peaks 1.0000000000
2990 MIR 213 TE_peak all_peaks 0.9953271028
2991 ERVL-MaLR 246 TE_peak all_peaks 0.5234042553
2992 L2 119 TE_peak all_peaks 0.8206896552
2993 ERVL-MaLR 163 TE_peak all_peaks 1.0000000000
2994 CR1 119 TE_peak all_peaks 1.0000000000
2995 Low_complexity 40 TE_peak all_peaks 1.0000000000
2996 MIR 93 TE_peak all_peaks 0.8378378378
2997 hAT-Tip100 36 TE_peak all_peaks 1.0000000000
2998 MIR 104 TE_peak all_peaks 1.0000000000
2999 Alu 203 TE_peak all_peaks 1.0000000000
3000 MIR 81 TE_peak all_peaks 1.0000000000
3001 MIR 156 TE_peak all_peaks 1.0000000000
3002 Alu 153 TE_peak all_peaks 0.5049504950
3003 MIR 37 TE_peak all_peaks 1.0000000000
3004 MIR 67 TE_peak all_peaks 1.0000000000
3005 Alu 67 not_TE_peak all_peaks 0.2596899225
3006 Alu 141 not_TE_peak all_peaks 0.4715719064
3007 MIR 49 not_TE_peak all_peaks 0.3475177305
3008 MIR 71 not_TE_peak all_peaks 0.3169642857
3009 Simple_repeat 23 TE_peak all_peaks 1.0000000000
3010 Simple_repeat 32 TE_peak all_peaks 1.0000000000
3011 MIR 15 not_TE_peak all_peaks 0.1181102362
3012 MIR 41 TE_peak all_peaks 1.0000000000
3013 MIR 113 TE_peak all_peaks 1.0000000000
3014 MIR 69 TE_peak all_peaks 1.0000000000
3015 <NA> NA not_TE_peak all_peaks NA
3016 Alu 216 TE_peak all_peaks 0.8059701493
3017 <NA> NA not_TE_peak all_peaks NA
3018 <NA> NA not_TE_peak all_peaks NA
3019 MIR 132 TE_peak all_peaks 1.0000000000
3020 Simple_repeat 17 TE_peak all_peaks 1.0000000000
3021 <NA> NA not_TE_peak all_peaks NA
3022 MIR 29 TE_peak all_peaks 0.5800000000
3023 Alu 246 TE_peak all_peaks 1.0000000000
3024 Alu 105 not_TE_peak all_peaks 0.3645833333
3025 Alu 132 TE_peak all_peaks 1.0000000000
3026 MIR 168 TE_peak all_peaks 1.0000000000
3027 L2 86 TE_peak all_peaks 1.0000000000
3028 L2 106 TE_peak all_peaks 1.0000000000
3029 L2 3 not_TE_peak all_peaks 0.0291262136
3030 L2 195 TE_peak all_peaks 0.5446927374
3031 MIR 95 TE_peak all_peaks 0.8189655172
3032 Simple_repeat 30 TE_peak all_peaks 1.0000000000
3033 Simple_repeat 67 TE_peak all_peaks 1.0000000000
3034 Simple_repeat 38 TE_peak all_peaks 1.0000000000
3035 MIR 145 TE_peak all_peaks 1.0000000000
3036 Alu 113 not_TE_peak all_peaks 0.3791946309
3037 MIR 150 TE_peak all_peaks 1.0000000000
3038 hAT-Tip100 171 TE_peak all_peaks 1.0000000000
3039 MIR 41 not_TE_peak all_peaks 0.3534482759
3040 MIR 164 TE_peak all_peaks 0.8039215686
3041 ERVL-MaLR 258 TE_peak all_peaks 0.7267605634
3042 MIR 192 TE_peak all_peaks 1.0000000000
3043 <NA> NA not_TE_peak all_peaks NA
3044 Alu 99 not_TE_peak all_peaks 0.3344594595
3045 Alu 87 TE_peak all_peaks 0.6170212766
3046 L1 68 TE_peak all_peaks 1.0000000000
3047 L2 247 TE_peak all_peaks 1.0000000000
3048 <NA> NA not_TE_peak all_peaks NA
3049 <NA> NA not_TE_peak all_peaks NA
3050 L2 281 TE_peak all_peaks 0.8808777429
3051 MIR 51 not_TE_peak all_peaks 0.3517241379
3052 Low_complexity 40 TE_peak all_peaks 1.0000000000
3053 Alu 231 TE_peak all_peaks 1.0000000000
3054 <NA> NA not_TE_peak all_peaks NA
3055 <NA> NA not_TE_peak all_peaks NA
3056 Alu 262 TE_peak all_peaks 0.9192982456
3057 MIR 79 TE_peak all_peaks 1.0000000000
3058 hAT-Charlie 217 TE_peak all_peaks 1.0000000000
3059 ERVL-MaLR 151 not_TE_peak all_peaks 0.3952879581
3060 Alu 27 not_TE_peak all_peaks 0.0912162162
3061 TcMar-Tigger 79 TE_peak all_peaks 1.0000000000
3062 TcMar-Tigger 82 not_TE_peak all_peaks 0.4019607843
3063 MIR 79 not_TE_peak all_peaks 0.4136125654
3064 Simple_repeat 32 TE_peak all_peaks 1.0000000000
3065 Simple_repeat 29 TE_peak all_peaks 1.0000000000
3066 MIR 25 not_TE_peak all_peaks 0.1953125000
3067 <NA> NA not_TE_peak all_peaks NA
3068 Alu 30 not_TE_peak all_peaks 0.0958466454
3069 MIR 6 not_TE_peak all_peaks 0.0461538462
3070 Low_complexity 60 TE_peak all_peaks 1.0000000000
3071 MIR 219 TE_peak all_peaks 1.0000000000
3072 Simple_repeat 65 TE_peak all_peaks 1.0000000000
3073 L2 116 not_TE_peak all_peaks 0.2648401826
3074 ERVL-MaLR 69 TE_peak all_peaks 0.6216216216
3075 MIR 149 TE_peak all_peaks 1.0000000000
3076 <NA> NA not_TE_peak all_peaks NA
3077 MIR 16 not_TE_peak all_peaks 0.0680851064
3078 MIR 119 TE_peak all_peaks 1.0000000000
3079 L2 68 TE_peak all_peaks 1.0000000000
3080 Alu 186 TE_peak all_peaks 0.5849056604
3081 ERV1 551 TE_peak all_peaks 0.6326061998
3082 ERV1 58 TE_peak all_peaks 1.0000000000
3083 L1 79 TE_peak all_peaks 0.8777777778
3084 Alu 317 TE_peak all_peaks 1.0000000000
3085 Alu 40 not_TE_peak all_peaks 0.1311475410
3086 <NA> NA not_TE_peak all_peaks NA
3087 MIR 129 TE_peak all_peaks 1.0000000000
3088 MIR 70 TE_peak all_peaks 1.0000000000
3089 Alu 212 TE_peak all_peaks 0.8907563025
3090 Gypsy 91 TE_peak all_peaks 0.5083798883
3091 Simple_repeat 38 TE_peak all_peaks 1.0000000000
3092 Simple_repeat 34 TE_peak all_peaks 1.0000000000
3093 Alu 54 not_TE_peak all_peaks 0.1794019934
3094 hAT-Charlie 17 not_TE_peak all_peaks 0.1240875912
3095 Alu 99 not_TE_peak all_peaks 0.3425605536
3096 Simple_repeat 32 TE_peak all_peaks 1.0000000000
3097 MIR 52 not_TE_peak all_peaks 0.4193548387
3098 Alu 131 not_TE_peak all_peaks 0.4337748344
3099 MIR 3 not_TE_peak all_peaks 0.0789473684
3100 Alu 71 not_TE_peak all_peaks 0.2398648649
3101 L2 53 TE_peak all_peaks 1.0000000000
3102 Alu 159 TE_peak all_peaks 0.5740072202
3103 L1 110 TE_peak all_peaks 1.0000000000
3104 Alu 52 not_TE_peak all_peaks 0.1918819188
3105 Simple_repeat 35 TE_peak all_peaks 1.0000000000
3106 <NA> NA not_TE_peak all_peaks NA
3107 ERVL-MaLR 230 TE_peak all_peaks 0.5778894472
3108 L2 119 TE_peak all_peaks 1.0000000000
3109 Alu 153 TE_peak all_peaks 0.5239726027
3110 L2 121 TE_peak all_peaks 1.0000000000
3111 L2 132 not_TE_peak all_peaks 0.2894736842
3112 <NA> NA not_TE_peak all_peaks NA
3113 L2 52 TE_peak all_peaks 0.6582278481
3114 MIR 87 TE_peak all_peaks 1.0000000000
3115 ERV1 120 not_TE_peak all_peaks 0.2558635394
3116 Simple_repeat 28 TE_peak all_peaks 1.0000000000
3117 ERV1 132 TE_peak all_peaks 1.0000000000
3118 Alu 29 not_TE_peak all_peaks 0.1066176471
3119 L1 43 TE_peak all_peaks 1.0000000000
3120 Alu 280 TE_peak all_peaks 0.9271523179
3121 MIR 149 TE_peak all_peaks 1.0000000000
3122 Alu 124 TE_peak all_peaks 1.0000000000
3123 Alu 43 TE_peak all_peaks 1.0000000000
3124 hAT-Tip100 11 not_TE_peak all_peaks 0.1506849315
3125 Alu 248 TE_peak all_peaks 0.8435374150
3126 hAT-Charlie 56 not_TE_peak all_peaks 0.2629107981
3127 L2 310 TE_peak all_peaks 1.0000000000
3128 MIR 55 TE_peak all_peaks 0.5612244898
3129 MIR 89 TE_peak all_peaks 1.0000000000
3130 Low_complexity 66 TE_peak all_peaks 1.0000000000
3131 Simple_repeat 59 TE_peak all_peaks 1.0000000000
3132 <NA> NA not_TE_peak all_peaks NA
3133 MIR 12 not_TE_peak all_peaks 0.0710059172
3134 MIR 126 TE_peak all_peaks 1.0000000000
3135 L2 101 TE_peak all_peaks 0.7537313433
3136 ERVL 112 not_TE_peak all_peaks 0.3404255319
3137 Alu 113 not_TE_peak all_peaks 0.3937282230
3138 <NA> NA not_TE_peak all_peaks NA
3139 MIR 84 TE_peak all_peaks 1.0000000000
3140 MIR 150 TE_peak all_peaks 1.0000000000
3141 Alu 58 not_TE_peak all_peaks 0.1952861953
3142 L2 354 TE_peak all_peaks 0.9267015707
3143 L1 159 TE_peak all_peaks 1.0000000000
3144 L2 82 TE_peak all_peaks 1.0000000000
3145 Alu 79 TE_peak all_peaks 1.0000000000
3146 ERV1 204 TE_peak all_peaks 1.0000000000
3147 ERV1 483 TE_peak all_peaks 1.0000000000
3148 ERV1 96 TE_peak all_peaks 0.7384615385
3149 MIR 7 not_TE_peak all_peaks 0.0648148148
3150 Simple_repeat 30 TE_peak all_peaks 1.0000000000
3151 Simple_repeat 19 TE_peak all_peaks 1.0000000000
3152 L2 47 TE_peak all_peaks 1.0000000000
3153 MIR 40 TE_peak all_peaks 1.0000000000
3154 Alu 210 TE_peak all_peaks 0.6752411576
3155 MIR 19 not_TE_peak all_peaks 0.1357142857
3156 <NA> NA not_TE_peak all_peaks NA
3157 Simple_repeat 29 TE_peak all_peaks 1.0000000000
3158 MIR 232 TE_peak all_peaks 1.0000000000
3159 L2 232 TE_peak all_peaks 0.7204968944
3160 Simple_repeat 28 TE_peak all_peaks 1.0000000000
3161 MIR 102 TE_peak all_peaks 1.0000000000
3162 RTE-X 214 TE_peak all_peaks 1.0000000000
3163 MIR 56 not_TE_peak all_peaks 0.2178988327
3164 MIR 28 not_TE_peak all_peaks 0.1171548117
3165 hAT-Tip100 58 TE_peak all_peaks 1.0000000000
3166 <NA> NA not_TE_peak all_peaks NA
3167 <NA> NA not_TE_peak all_peaks NA
3168 hAT-Charlie 51 not_TE_peak all_peaks 0.3311688312
3169 L1 214 TE_peak all_peaks 1.0000000000
3170 hAT-Charlie 58 TE_peak all_peaks 1.0000000000
3171 MIR 55 not_TE_peak all_peaks 0.2696078431
3172 hAT-Tip100 43 TE_peak all_peaks 1.0000000000
3173 hAT-Tip100 44 TE_peak all_peaks 1.0000000000
3174 MIR 128 TE_peak all_peaks 1.0000000000
3175 Alu 171 TE_peak all_peaks 1.0000000000
3176 Simple_repeat 47 TE_peak all_peaks 1.0000000000
3177 MIR 25 not_TE_peak all_peaks 0.4098360656
3178 MIR 37 not_TE_peak all_peaks 0.2312500000
3179 5S-Deu-L2 131 TE_peak all_peaks 0.6968085106
3180 MIR 29 not_TE_peak all_peaks 0.1666666667
3181 MIR 198 TE_peak all_peaks 1.0000000000
3182 L2 39 TE_peak all_peaks 1.0000000000
3183 MIR 193 TE_peak all_peaks 1.0000000000
3184 <NA> NA not_TE_peak all_peaks NA
3185 ERVL 392 TE_peak all_peaks 0.9560975610
3186 L1 235 not_TE_peak all_peaks 0.1368666278
3187 TcMar-Tigger 330 not_TE_peak all_peaks 0.4545454545
3188 <NA> NA not_TE_peak all_peaks NA
3189 <NA> NA not_TE_peak all_peaks NA
3190 <NA> NA not_TE_peak all_peaks NA
3191 L2 26 not_TE_peak all_peaks 0.4727272727
3192 <NA> NA not_TE_peak all_peaks NA
3193 MIR 28 not_TE_peak all_peaks 0.4179104478
3194 Alu 85 TE_peak all_peaks 1.0000000000
3195 L2 34 not_TE_peak all_peaks 0.4657534247
3196 MIR 81 TE_peak all_peaks 1.0000000000
3197 ERV1 175 TE_peak all_peaks 1.0000000000
3198 Alu 285 TE_peak all_peaks 1.0000000000
3199 Simple_repeat 45 TE_peak all_peaks 1.0000000000
3200 ERV1 208 not_TE_peak all_peaks 0.4351464435
3201 hAT-Charlie 185 TE_peak all_peaks 1.0000000000
3202 hAT-Charlie 120 TE_peak all_peaks 1.0000000000
3203 TcMar-Tigger 185 not_TE_peak all_peaks 0.3432282004
3204 <NA> NA not_TE_peak all_peaks NA
3205 Low_complexity 96 TE_peak all_peaks 1.0000000000
3206 Simple_repeat 54 TE_peak all_peaks 1.0000000000
3207 Simple_repeat 25 TE_peak all_peaks 1.0000000000
3208 Simple_repeat 24 TE_peak all_peaks 1.0000000000
3209 TcMar-Tigger 136 not_TE_peak all_peaks 0.4444444444
3210 Alu 209 TE_peak all_peaks 0.6852459016
3211 <NA> NA not_TE_peak all_peaks NA
3212 L2 38 not_TE_peak all_peaks 0.4418604651
3213 <NA> NA not_TE_peak all_peaks NA
3214 <NA> NA not_TE_peak all_peaks NA
3215 MIR 76 not_TE_peak all_peaks 0.4293785311
3216 CR1 197 TE_peak all_peaks 1.0000000000
3217 hAT-Tip100 40 TE_peak all_peaks 1.0000000000
3218 Alu 58 not_TE_peak all_peaks 0.1933333333
3219 L2 61 not_TE_peak all_peaks 0.4692307692
3220 Alu 88 TE_peak all_peaks 0.7333333333
3221 <NA> NA not_TE_peak all_peaks NA
3222 Alu 180 TE_peak all_peaks 0.6228373702
3223 Simple_repeat 45 TE_peak all_peaks 1.0000000000
3224 <NA> NA not_TE_peak all_peaks NA
3225 L2 124 TE_peak all_peaks 1.0000000000
3226 Simple_repeat 15 TE_peak all_peaks 0.6521739130
3227 Alu 262 TE_peak all_peaks 0.9065743945
3228 ERV1 228 TE_peak all_peaks 1.0000000000
3229 hAT-Charlie 155 TE_peak all_peaks 0.7711442786
3230 MIR 58 not_TE_peak all_peaks 0.3068783069
3231 TcMar-Tc2 85 TE_peak all_peaks 1.0000000000
3232 CR1 99 TE_peak all_peaks 1.0000000000
3233 MIR 123 TE_peak all_peaks 0.7592592593
3234 MIR 251 TE_peak all_peaks 1.0000000000
3235 Alu 111 TE_peak all_peaks 0.7350993377
3236 <NA> NA not_TE_peak all_peaks NA
3237 Alu 308 TE_peak all_peaks 1.0000000000
3238 MIR 146 TE_peak all_peaks 1.0000000000
3239 MIR 22 not_TE_peak all_peaks 0.1496598639
3240 Low_complexity 3 not_TE_peak all_peaks 0.0681818182
3241 Alu 167 TE_peak all_peaks 0.5511551155
3242 hAT-Tip100 127 TE_peak all_peaks 1.0000000000
3243 MIR 141 TE_peak all_peaks 1.0000000000
3244 Alu 115 not_TE_peak all_peaks 0.3846153846
3245 Alu 295 TE_peak all_peaks 1.0000000000
3246 <NA> NA not_TE_peak all_peaks NA
3247 ERVL-MaLR 87 not_TE_peak all_peaks 0.2142857143
3248 L2 206 TE_peak all_peaks 1.0000000000
3249 MIR 91 not_TE_peak all_peaks 0.4892473118
3250 Alu 62 not_TE_peak all_peaks 0.2198581560
3251 <NA> NA not_TE_peak all_peaks NA
3252 L2 364 TE_peak all_peaks 0.9405684755
3253 Simple_repeat 26 TE_peak all_peaks 1.0000000000
3254 Simple_repeat 37 TE_peak all_peaks 0.7115384615
3255 L2 47 not_TE_peak all_peaks 0.1015118790
3256 Simple_repeat 70 TE_peak all_peaks 1.0000000000
3257 Simple_repeat 29 TE_peak all_peaks 1.0000000000
3258 L2 59 TE_peak all_peaks 1.0000000000
3259 MIR 53 TE_peak all_peaks 0.5638297872
3260 Alu 183 TE_peak all_peaks 0.6421052632
3261 L1 419 not_TE_peak all_peaks 0.4415173867
3262 Simple_repeat 170 TE_peak all_peaks 0.6800000000
3263 <NA> NA not_TE_peak all_peaks NA
3264 L1 39 not_TE_peak all_peaks 0.0898617512
3265 Alu 189 TE_peak all_peaks 0.6217105263
3266 Alu 84 TE_peak all_peaks 0.7058823529
3267 CR1 85 TE_peak all_peaks 1.0000000000
3268 L2 12 not_TE_peak all_peaks 0.2608695652
3269 MIR 121 TE_peak all_peaks 1.0000000000
3270 MIR 27 not_TE_peak all_peaks 0.2142857143
3271 Simple_repeat 17 TE_peak all_peaks 1.0000000000
3272 <NA> NA not_TE_peak all_peaks NA
3273 MIR 52 not_TE_peak all_peaks 0.3229813665
3274 MIR 120 TE_peak all_peaks 1.0000000000
3275 hAT-Charlie 47 not_TE_peak all_peaks 0.4272727273
3276 MIR 66 TE_peak all_peaks 0.7674418605
3277 <NA> NA not_TE_peak all_peaks NA
3278 MIR 168 TE_peak all_peaks 1.0000000000
3279 MIR 114 TE_peak all_peaks 1.0000000000
3280 TcMar-Tigger 282 not_TE_peak all_peaks 0.3676662321
3281 L2 45 not_TE_peak all_peaks 0.3913043478
3282 MIR 224 TE_peak all_peaks 1.0000000000
3283 Simple_repeat 87 TE_peak all_peaks 1.0000000000
3284 ERV1 487 not_TE_peak all_peaks 0.3333333333
3285 MIR 145 TE_peak all_peaks 1.0000000000
3286 MIR 142 TE_peak all_peaks 1.0000000000
3287 MIR 94 TE_peak all_peaks 1.0000000000
3288 hAT-Charlie 108 TE_peak all_peaks 0.5046728972
3289 L1 199 TE_peak all_peaks 0.9004524887
3290 MIR 133 TE_peak all_peaks 0.8926174497
3291 <NA> NA not_TE_peak all_peaks NA
3292 ERVL 296 TE_peak all_peaks 0.7201946472
3293 hAT-Tip100 10 not_TE_peak all_peaks 0.1204819277
3294 hAT-Tip100 4 not_TE_peak all_peaks 0.0281690141
3295 ERVL 198 TE_peak all_peaks 0.6449511401
3296 <NA> NA not_TE_peak all_peaks NA
3297 <NA> NA not_TE_peak all_peaks NA
3298 Low_complexity 40 TE_peak all_peaks 1.0000000000
3299 Alu 144 TE_peak all_peaks 0.9411764706
3300 hAT-Charlie 54 not_TE_peak all_peaks 0.3375000000
3301 ERV1 664 TE_peak all_peaks 0.9083447332
3302 Alu 98 TE_peak all_peaks 1.0000000000
3303 Low_complexity 52 TE_peak all_peaks 1.0000000000
3304 <NA> NA not_TE_peak all_peaks NA
3305 hAT-Charlie 275 TE_peak all_peaks 0.5705394191
3306 Alu 42 not_TE_peak all_peaks 0.1414141414
3307 MIR 74 TE_peak all_peaks 1.0000000000
3308 L2 144 TE_peak all_peaks 1.0000000000
3309 Alu 150 TE_peak all_peaks 0.5208333333
3310 <NA> NA not_TE_peak all_peaks NA
3311 Simple_repeat 42 TE_peak all_peaks 1.0000000000
3312 L2 226 TE_peak all_peaks 1.0000000000
3313 Simple_repeat 40 TE_peak all_peaks 1.0000000000
3314 Alu 35 not_TE_peak all_peaks 0.2243589744
3315 Alu 220 TE_peak all_peaks 0.7284768212
3316 TcMar-Tigger 38 TE_peak all_peaks 1.0000000000
3317 Alu 212 TE_peak all_peaks 0.7043189369
3318 <NA> NA not_TE_peak all_peaks NA
3319 L2 249 TE_peak all_peaks 0.9087591241
3320 Alu 267 TE_peak all_peaks 0.9335664336
3321 Alu 302 TE_peak all_peaks 1.0000000000
3322 <NA> NA not_TE_peak all_peaks NA
3323 MIR 68 TE_peak all_peaks 1.0000000000
3324 Low_complexity 34 TE_peak all_peaks 1.0000000000
3325 Alu 169 TE_peak all_peaks 0.5487012987
3326 Alu 115 not_TE_peak all_peaks 0.3820598007
3327 <NA> NA not_TE_peak all_peaks NA
3328 MIR 194 TE_peak all_peaks 0.8016528926
3329 Simple_repeat 53 TE_peak all_peaks 0.7162162162
3330 Simple_repeat 56 TE_peak all_peaks 1.0000000000
3331 Low_complexity 49 TE_peak all_peaks 1.0000000000
3332 hAT-Charlie 34 not_TE_peak all_peaks 0.2179487179
3333 <NA> NA not_TE_peak all_peaks NA
3334 Alu 204 TE_peak all_peaks 0.6538461538
3335 hAT-Charlie 29 not_TE_peak all_peaks 0.1542553191
3336 hAT-Tip100 69 TE_peak all_peaks 1.0000000000
3337 L2 269 TE_peak all_peaks 1.0000000000
3338 MIR 169 TE_peak all_peaks 0.7971698113
3339 L2 117 not_TE_peak all_peaks 0.2577092511
3340 L2 514 TE_peak all_peaks 0.9846743295
3341 MIR 88 TE_peak all_peaks 1.0000000000
3342 hAT-Charlie 49 not_TE_peak all_peaks 0.3475177305
3343 hAT-Charlie 169 TE_peak all_peaks 1.0000000000
3344 Alu 9 not_TE_peak all_peaks 0.0291262136
3345 L1 299 not_TE_peak all_peaks 0.0488402483
3346 MIR 86 TE_peak all_peaks 0.6417910448
3347 MIR 64 TE_peak all_peaks 0.9552238806
3348 MIR 37 TE_peak all_peaks 0.6065573770
3349 Simple_repeat 32 TE_peak all_peaks 1.0000000000
3350 Simple_repeat 39 TE_peak all_peaks 1.0000000000
3351 MIR 221 TE_peak all_peaks 1.0000000000
3352 L2 31 not_TE_peak all_peaks 0.1565656566
3353 MIR 134 TE_peak all_peaks 1.0000000000
3354 <NA> NA not_TE_peak all_peaks NA
3355 <NA> NA not_TE_peak all_peaks NA
3356 MIR 117 TE_peak all_peaks 0.8013698630
3357 <NA> NA not_TE_peak all_peaks NA
3358 Simple_repeat 126 TE_peak all_peaks 1.0000000000
3359 ERVK 643 TE_peak all_peaks 0.6642561983
3360 ERVL 55 TE_peak all_peaks 0.8208955224
3361 L2 62 TE_peak all_peaks 0.9117647059
3362 Alu 48 not_TE_peak all_peaks 0.1548387097
3363 hAT-Charlie 67 TE_peak all_peaks 1.0000000000
3364 ERVL-MaLR 350 TE_peak all_peaks 0.9859154930
3365 Simple_repeat 162 TE_peak all_peaks 1.0000000000
3366 ERV1 494 TE_peak all_peaks 0.8111658456
3367 <NA> NA not_TE_peak all_peaks NA
3368 <NA> NA not_TE_peak all_peaks NA
3369 <NA> NA not_TE_peak all_peaks NA
3370 <NA> NA not_TE_peak all_peaks NA
3371 <NA> NA not_TE_peak all_peaks NA
3372 L2 110 not_TE_peak all_peaks 0.4198473282
3373 L2 349 TE_peak all_peaks 1.0000000000
3374 MIR 11 TE_peak all_peaks 1.0000000000
3375 MIR 11 not_TE_peak all_peaks 0.0533980583
3376 L2 9 not_TE_peak all_peaks 0.0297029703
3377 MIR 138 TE_peak all_peaks 1.0000000000
3378 L2 16 not_TE_peak all_peaks 0.1739130435
3379 <NA> NA not_TE_peak all_peaks NA
3380 MIR 71 not_TE_peak all_peaks 0.4896551724
3381 Simple_repeat 31 TE_peak all_peaks 1.0000000000
3382 MIR 37 not_TE_peak all_peaks 0.1753554502
3383 L2 235 TE_peak all_peaks 0.9915611814
3384 Alu 7 not_TE_peak all_peaks 0.0237288136
3385 Simple_repeat 28 TE_peak all_peaks 1.0000000000
3386 ERV1 373 TE_peak all_peaks 0.6114754098
3387 Alu 21 not_TE_peak all_peaks 0.0707070707
3388 MIR 29 not_TE_peak all_peaks 0.2283464567
3389 MIR 85 TE_peak all_peaks 1.0000000000
3390 ERVL-MaLR 182 TE_peak all_peaks 0.5098039216
3391 MIR 103 TE_peak all_peaks 1.0000000000
3392 Alu 263 TE_peak all_peaks 0.8651315789
3393 MIR 13 not_TE_peak all_peaks 0.0673575130
3394 <NA> NA not_TE_peak all_peaks NA
3395 MIR 159 TE_peak all_peaks 1.0000000000
3396 Simple_repeat 584 not_TE_peak all_peaks 0.2576091751
3397 MIR 101 TE_peak all_peaks 0.8559322034
3398 L2 284 TE_peak all_peaks 0.5904365904
3399 <NA> NA not_TE_peak all_peaks NA
3400 <NA> NA not_TE_peak all_peaks NA
3401 MIR 181 TE_peak all_peaks 0.6557971014
3402 L2 313 TE_peak all_peaks 1.0000000000
3403 Simple_repeat 27 TE_peak all_peaks 1.0000000000
3404 L2 173 TE_peak all_peaks 1.0000000000
3405 Alu 38 not_TE_peak all_peaks 0.1279461279
3406 Simple_repeat 83 TE_peak all_peaks 1.0000000000
3407 L2 40 not_TE_peak all_peaks 0.0821355236
3408 Simple_repeat 198 TE_peak all_peaks 1.0000000000
3409 CR1 61 TE_peak all_peaks 1.0000000000
3410 MIR 59 not_TE_peak all_peaks 0.4041095890
3411 L2 88 TE_peak all_peaks 1.0000000000
3412 MIR 208 TE_peak all_peaks 1.0000000000
3413 MIR 32 not_TE_peak all_peaks 0.2000000000
3414 hAT-Tip100 47 not_TE_peak all_peaks 0.2797619048
3415 Simple_repeat 43 TE_peak all_peaks 1.0000000000
3416 MIR 97 TE_peak all_peaks 1.0000000000
3417 <NA> NA not_TE_peak all_peaks NA
3418 TcMar-Tigger 364 not_TE_peak all_peaks 0.3382899628
3419 Alu 151 TE_peak all_peaks 0.5261324042
3420 L2 108 TE_peak all_peaks 0.5966850829
3421 ERVL 174 not_TE_peak all_peaks 0.3068783069
3422 MIR 17 not_TE_peak all_peaks 0.0890052356
3423 Simple_repeat 42 TE_peak all_peaks 1.0000000000
3424 Simple_repeat 22 TE_peak all_peaks 1.0000000000
3425 <NA> NA not_TE_peak all_peaks NA
3426 MIR 14 not_TE_peak all_peaks 0.1386138614
3427 ERVK 318 TE_peak all_peaks 0.7004405286
3428 Alu 114 not_TE_peak all_peaks 0.4160583942
3429 Simple_repeat 21 TE_peak all_peaks 1.0000000000
3430 MIR 129 TE_peak all_peaks 1.0000000000
3431 Alu 149 TE_peak all_peaks 0.5209790210
3432 hAT-Charlie 288 TE_peak all_peaks 1.0000000000
3433 Simple_repeat 24 TE_peak all_peaks 1.0000000000
3434 <NA> NA not_TE_peak all_peaks NA
3435 L1 225 TE_peak all_peaks 0.8964143426
3436 hAT-Tip100 133 not_TE_peak all_peaks 0.4079754601
3437 hAT-Tip100 240 TE_peak all_peaks 1.0000000000
3438 MIR 72 TE_peak all_peaks 0.7200000000
3439 <NA> NA not_TE_peak all_peaks NA
3440 MIR 23 not_TE_peak all_peaks 0.2053571429
3441 MIR 85 TE_peak all_peaks 0.5089820359
3442 TcMar-Tigger 148 not_TE_peak all_peaks 0.3457943925
3443 ERVL-MaLR 222 TE_peak all_peaks 0.7025316456
3444 MIR 112 TE_peak all_peaks 1.0000000000
3445 Alu 38 not_TE_peak all_peaks 0.1301369863
3446 Alu 54 not_TE_peak all_peaks 0.4354838710
3447 Simple_repeat 31 TE_peak all_peaks 1.0000000000
3448 MIR 169 TE_peak all_peaks 1.0000000000
3449 MIR 116 TE_peak all_peaks 0.5110132159
3450 <NA> NA not_TE_peak all_peaks NA
3451 ERV1 279 TE_peak all_peaks 0.7664835165
3452 ERV1 118 TE_peak all_peaks 0.7866666667
3453 ERVL 345 TE_peak all_peaks 1.0000000000
3454 L2 2 not_TE_peak all_peaks 0.0100502513
3455 MIR 106 TE_peak all_peaks 1.0000000000
3456 MIR 223 TE_peak all_peaks 1.0000000000
3457 Alu 17 not_TE_peak all_peaks 0.1338582677
3458 L2 37 not_TE_peak all_peaks 0.4512195122
3459 L2 258 TE_peak all_peaks 1.0000000000
3460 MIR 18 not_TE_peak all_peaks 0.0967741935
3461 MIR 15 not_TE_peak all_peaks 0.0862068966
3462 L2 122 TE_peak all_peaks 1.0000000000
3463 <NA> NA not_TE_peak all_peaks NA
3464 Simple_repeat 72 TE_peak all_peaks 1.0000000000
3465 ERVL 170 TE_peak all_peaks 0.6227106227
3466 <NA> NA not_TE_peak all_peaks NA
3467 <NA> NA not_TE_peak all_peaks NA
3468 MIR 64 not_TE_peak all_peaks 0.3137254902
3469 MIR 180 TE_peak all_peaks 1.0000000000
3470 Low_complexity 41 TE_peak all_peaks 1.0000000000
3471 L2 138 TE_peak all_peaks 1.0000000000
3472 Alu 33 not_TE_peak all_peaks 0.4342105263
3473 <NA> NA not_TE_peak all_peaks NA
3474 <NA> NA not_TE_peak all_peaks NA
3475 ERV1 351 TE_peak all_peaks 0.6093750000
3476 MIR 66 TE_peak all_peaks 1.0000000000
3477 MIR 217 TE_peak all_peaks 1.0000000000
3478 LTR? 79 not_TE_peak all_peaks 0.2841726619
3479 hAT-Tip100 64 TE_peak all_peaks 1.0000000000
3480 L1 90 TE_peak all_peaks 1.0000000000
3481 L2 275 TE_peak all_peaks 1.0000000000
3482 hAT-Tip100? 61 TE_peak all_peaks 1.0000000000
3483 L1 96 TE_peak all_peaks 1.0000000000
3484 Alu 84 not_TE_peak all_peaks 0.2754098361
3485 Alu 30 not_TE_peak all_peaks 0.0983606557
3486 Simple_repeat 40 TE_peak all_peaks 1.0000000000
3487 MIR 180 TE_peak all_peaks 1.0000000000
3488 MIR 151 TE_peak all_peaks 1.0000000000
3489 L1 59 not_TE_peak all_peaks 0.2669683258
3490 Simple_repeat 33 TE_peak all_peaks 1.0000000000
3491 Simple_repeat 47 TE_peak all_peaks 1.0000000000
3492 Simple_repeat 36 TE_peak all_peaks 1.0000000000
3493 <NA> NA not_TE_peak all_peaks NA
3494 <NA> NA not_TE_peak all_peaks NA
3495 MIR 147 TE_peak all_peaks 0.7538461538
3496 MIR 159 TE_peak all_peaks 1.0000000000
3497 ERVL 194 TE_peak all_peaks 0.9065420561
3498 <NA> NA not_TE_peak all_peaks NA
3499 <NA> NA not_TE_peak all_peaks NA
3500 Simple_repeat 56 TE_peak all_peaks 1.0000000000
3501 MIR 71 TE_peak all_peaks 0.6698113208
3502 Simple_repeat 85 TE_peak all_peaks 1.0000000000
3503 Simple_repeat 40 TE_peak all_peaks 1.0000000000
3504 hAT-Charlie 15 not_TE_peak all_peaks 0.1500000000
3505 MIR 187 TE_peak all_peaks 1.0000000000
3506 MIR 116 TE_peak all_peaks 0.8923076923
3507 <NA> NA not_TE_peak all_peaks NA
3508 MIR 66 TE_peak all_peaks 0.8148148148
3509 <NA> NA not_TE_peak all_peaks NA
3510 <NA> NA not_TE_peak all_peaks NA
3511 L2 267 TE_peak all_peaks 1.0000000000
3512 hAT-Charlie 140 TE_peak all_peaks 0.6796116505
3513 <NA> NA not_TE_peak all_peaks NA
3514 <NA> NA not_TE_peak all_peaks NA
3515 Simple_repeat 22 TE_peak all_peaks 1.0000000000
3516 Simple_repeat 26 TE_peak all_peaks 1.0000000000
3517 Simple_repeat 33 TE_peak all_peaks 1.0000000000
3518 <NA> NA not_TE_peak all_peaks NA
3519 Simple_repeat 25 TE_peak all_peaks 1.0000000000
3520 L2 265 TE_peak all_peaks 1.0000000000
3521 L1 140 TE_peak all_peaks 0.6008583691
3522 Simple_repeat 54 TE_peak all_peaks 1.0000000000
3523 <NA> NA not_TE_peak all_peaks NA
3524 Simple_repeat 9 not_TE_peak all_peaks 0.2571428571
3525 CR1 160 TE_peak all_peaks 1.0000000000
3526 Simple_repeat 25 not_TE_peak all_peaks 0.1024590164
3527 srpRNA 30 TE_peak all_peaks 0.6382978723
3528 hAT-Charlie 66 TE_peak all_peaks 1.0000000000
3529 MIR 7 not_TE_peak all_peaks 0.0603448276
3530 <NA> NA not_TE_peak all_peaks NA
3531 L2 63 not_TE_peak all_peaks 0.3727810651
3532 Alu 129 not_TE_peak all_peaks 0.4229508197
3533 L2 176 TE_peak all_peaks 1.0000000000
3534 Alu 287 TE_peak all_peaks 0.9379084967
3535 Alu 12 not_TE_peak all_peaks 0.0375000000
3536 <NA> NA not_TE_peak all_peaks NA
3537 <NA> NA not_TE_peak all_peaks NA
3538 <NA> NA not_TE_peak all_peaks NA
3539 MIR 44 not_TE_peak all_peaks 0.2699386503
3540 <NA> NA not_TE_peak all_peaks NA
3541 Simple_repeat 26 TE_peak all_peaks 0.5531914894
3542 Simple_repeat 47 TE_peak all_peaks 1.0000000000
3543 <NA> NA not_TE_peak all_peaks NA
3544 TcMar-Tigger 357 TE_peak all_peaks 0.9494680851
3545 Alu 139 TE_peak all_peaks 1.0000000000
3546 Alu 72 not_TE_peak all_peaks 0.2457337884
3547 Alu 53 not_TE_peak all_peaks 0.1766666667
3548 L2 229 TE_peak all_peaks 0.6505681818
3549 Simple_repeat 61 TE_peak all_peaks 1.0000000000
3550 <NA> NA not_TE_peak all_peaks NA
3551 Simple_repeat 6 TE_peak all_peaks 1.0000000000
3552 Simple_repeat 32 TE_peak all_peaks 1.0000000000
3553 Simple_repeat 11 TE_peak all_peaks 1.0000000000
3554 MIR 45 TE_peak all_peaks 0.9574468085
3555 Alu 116 not_TE_peak all_peaks 0.3945578231
3556 ERV1 222 TE_peak all_peaks 1.0000000000
3557 Alu 69 not_TE_peak all_peaks 0.2277227723
3558 ERV1 26 not_TE_peak all_peaks 0.0682414698
3559 ERV1 256 TE_peak all_peaks 1.0000000000
3560 ERV1 188 TE_peak all_peaks 1.0000000000
3561 Alu 92 TE_peak all_peaks 0.6344827586
3562 L1 37 TE_peak all_peaks 0.5781250000
3563 L1 46 not_TE_peak all_peaks 0.2705882353
3564 Alu 307 TE_peak all_peaks 1.0000000000
3565 L1 50 not_TE_peak all_peaks 0.4629629630
3566 <NA> NA not_TE_peak all_peaks NA
3567 Simple_repeat 22 TE_peak all_peaks 1.0000000000
3568 Alu 83 TE_peak all_peaks 0.5804195804
3569 Alu 90 not_TE_peak all_peaks 0.2903225806
3570 <NA> NA not_TE_peak all_peaks NA
3571 Simple_repeat 28 TE_peak all_peaks 1.0000000000
3572 Simple_repeat 65 TE_peak all_peaks 1.0000000000
3573 Simple_repeat 55 TE_peak all_peaks 1.0000000000
3574 Simple_repeat 40 TE_peak all_peaks 1.0000000000
3575 Simple_repeat 46 TE_peak all_peaks 1.0000000000
3576 Simple_repeat 31 TE_peak all_peaks 1.0000000000
3577 Simple_repeat 36 TE_peak all_peaks 1.0000000000
3578 <NA> NA not_TE_peak all_peaks NA
3579 <NA> NA not_TE_peak all_peaks NA
3580 <NA> NA not_TE_peak all_peaks NA
3581 <NA> NA not_TE_peak all_peaks NA
3582 <NA> NA not_TE_peak all_peaks NA
3583 <NA> NA not_TE_peak all_peaks NA
3584 <NA> NA not_TE_peak all_peaks NA
3585 Low_complexity 28 TE_peak all_peaks 1.0000000000
3586 <NA> NA not_TE_peak all_peaks NA
3587 <NA> NA not_TE_peak all_peaks NA
3588 L2 326 not_TE_peak all_peaks 0.3630289532
3589 <NA> NA not_TE_peak all_peaks NA
3590 <NA> NA not_TE_peak all_peaks NA
3591 L2 83 TE_peak all_peaks 1.0000000000
3592 RTE-BovB 70 TE_peak all_peaks 1.0000000000
3593 MIR 10 not_TE_peak all_peaks 0.0970873786
3594 <NA> NA not_TE_peak all_peaks NA
3595 <NA> NA not_TE_peak all_peaks NA
3596 ERVL-MaLR 237 TE_peak all_peaks 0.9257812500
3597 Alu 77 TE_peak all_peaks 1.0000000000
3598 Alu 178 TE_peak all_peaks 0.6742424242
3599 Alu 80 not_TE_peak all_peaks 0.2580645161
3600 ERVL 178 TE_peak all_peaks 1.0000000000
3601 Alu 110 not_TE_peak all_peaks 0.3754266212
3602 ERVL-MaLR 58 not_TE_peak all_peaks 0.3536585366
3603 ERVL-MaLR 199 TE_peak all_peaks 0.9754901961
3604 L2 61 TE_peak all_peaks 1.0000000000
3605 Simple_repeat 76 TE_peak all_peaks 1.0000000000
3606 Simple_repeat 33 TE_peak all_peaks 1.0000000000
3607 Simple_repeat 31 TE_peak all_peaks 1.0000000000
3608 <NA> NA not_TE_peak all_peaks NA
3609 L2 53 TE_peak all_peaks 0.7910447761
3610 <NA> NA not_TE_peak all_peaks NA
3611 MIR 38 not_TE_peak all_peaks 0.3089430894
3612 <NA> NA not_TE_peak all_peaks NA
3613 Alu 138 not_TE_peak all_peaks 0.4758620690
3614 hAT-Charlie 76 TE_peak all_peaks 1.0000000000
3615 Alu 266 TE_peak all_peaks 0.9236111111
3616 <NA> NA not_TE_peak all_peaks NA
3617 MIR 70 TE_peak all_peaks 0.5785123967
3618 <NA> NA not_TE_peak all_peaks NA
3619 L2 17 not_TE_peak all_peaks 0.0398126464
3620 Alu 124 not_TE_peak all_peaks 0.4217687075
3621 <NA> NA not_TE_peak all_peaks NA
3622 hAT-Tip100 12 not_TE_peak all_peaks 0.0740740741
3623 MIR 107 TE_peak all_peaks 0.8842975207
3624 <NA> NA not_TE_peak all_peaks NA
3625 Alu 62 not_TE_peak all_peaks 0.2032786885
3626 Alu 94 not_TE_peak all_peaks 0.4051724138
3627 <NA> NA not_TE_peak all_peaks NA
3628 L2 76 not_TE_peak all_peaks 0.2968750000
3629 L1 107 not_TE_peak all_peaks 0.2899728997
3630 L2 7 not_TE_peak all_peaks 0.0472972973
3631 MIR 109 TE_peak all_peaks 1.0000000000
3632 Alu 120 not_TE_peak all_peaks 0.3896103896
3633 <NA> NA not_TE_peak all_peaks NA
3634 L2 174 TE_peak all_peaks 0.7767857143
3635 MIR 146 TE_peak all_peaks 1.0000000000
3636 MIR 13 not_TE_peak all_peaks 0.1733333333
3637 MIR 126 TE_peak all_peaks 1.0000000000
3638 Simple_repeat 26 TE_peak all_peaks 1.0000000000
3639 Simple_repeat 41 TE_peak all_peaks 1.0000000000
3640 <NA> NA not_TE_peak all_peaks NA
3641 <NA> NA not_TE_peak all_peaks NA
3642 Alu 134 TE_peak all_peaks 0.6380952381
3643 <NA> NA not_TE_peak all_peaks NA
3644 MIR 46 TE_peak all_peaks 0.5287356322
3645 L2 171 TE_peak all_peaks 0.6551724138
3646 Simple_repeat 29 TE_peak all_peaks 1.0000000000
3647 MIR 93 TE_peak all_peaks 1.0000000000
3648 Alu 3 not_TE_peak all_peaks 0.0096774194
3649 L2 456 TE_peak all_peaks 0.6898638427
3650 ERV1 174 TE_peak all_peaks 1.0000000000
3651 ERV1 1 not_TE_peak all_peaks 0.0032894737
3652 L2 368 not_TE_peak all_peaks 0.4057331863
3653 Simple_repeat 47 TE_peak all_peaks 1.0000000000
3654 Alu 3 not_TE_peak all_peaks 0.0103448276
3655 MIR 123 TE_peak all_peaks 1.0000000000
3656 <NA> NA not_TE_peak all_peaks NA
3657 Alu 310 TE_peak all_peaks 0.9841269841
3658 ERVL 44 not_TE_peak all_peaks 0.1182795699
3659 ERVL 120 TE_peak all_peaks 1.0000000000
3660 Alu 68 not_TE_peak all_peaks 0.2369337979
3661 ERVL 152 TE_peak all_peaks 1.0000000000
3662 ERVL-MaLR 70 not_TE_peak all_peaks 0.1254480287
3663 Simple_repeat 589 TE_peak all_peaks 1.0000000000
3664 MIR 11 TE_peak all_peaks 1.0000000000
3665 Alu 40 not_TE_peak all_peaks 0.1433691756
3666 ERVL 496 TE_peak all_peaks 0.5720876586
3667 TcMar-Tigger 156 TE_peak all_peaks 0.9285714286
3668 Low_complexity 28 TE_peak all_peaks 1.0000000000
3669 Simple_repeat 3 not_TE_peak all_peaks 0.0375000000
3670 Simple_repeat 35 TE_peak all_peaks 1.0000000000
3671 MIR 47 TE_peak all_peaks 1.0000000000
3672 MIR 89 TE_peak all_peaks 1.0000000000
3673 MIR 3 not_TE_peak all_peaks 0.0545454545
3674 MIR 100 TE_peak all_peaks 0.6711409396
3675 L2 79 TE_peak all_peaks 1.0000000000
3676 MIR 118 TE_peak all_peaks 1.0000000000
3677 Simple_repeat 44 TE_peak all_peaks 1.0000000000
3678 MIR 68 TE_peak all_peaks 0.7640449438
3679 MIR 205 TE_peak all_peaks 1.0000000000
3680 MIR 166 TE_peak all_peaks 0.9880952381
3681 L2 147 TE_peak all_peaks 0.7819148936
3682 <NA> NA not_TE_peak all_peaks NA
3683 Simple_repeat 58 TE_peak all_peaks 1.0000000000
3684 Simple_repeat 75 TE_peak all_peaks 1.0000000000
3685 Simple_repeat 20 TE_peak all_peaks 1.0000000000
3686 MIR 152 TE_peak all_peaks 1.0000000000
3687 MIR 48 TE_peak all_peaks 0.6857142857
3688 Alu 83 TE_peak all_peaks 0.6240601504
3689 Alu 38 not_TE_peak all_peaks 0.1407407407
3690 Alu 114 TE_peak all_peaks 1.0000000000
3691 MIR 156 TE_peak all_peaks 1.0000000000
3692 MIR 17 not_TE_peak all_peaks 0.2207792208
3693 Alu 112 not_TE_peak all_peaks 0.3862068966
3694 Simple_repeat 50 TE_peak all_peaks 1.0000000000
3695 Simple_repeat 53 TE_peak all_peaks 1.0000000000
3696 Simple_repeat 38 TE_peak all_peaks 1.0000000000
3697 Simple_repeat 43 TE_peak all_peaks 1.0000000000
3698 Alu 137 not_TE_peak all_peaks 0.4462540717
3699 MIR 50 not_TE_peak all_peaks 0.4237288136
3700 Simple_repeat 27 not_TE_peak all_peaks 0.3461538462
3701 L2 395 TE_peak all_peaks 0.7247706422
3702 <NA> NA not_TE_peak all_peaks NA
3703 <NA> NA not_TE_peak all_peaks NA
3704 L2 69 TE_peak all_peaks 1.0000000000
3705 MIR 2 not_TE_peak all_peaks 0.0363636364
3706 L2 146 TE_peak all_peaks 0.5816733068
3707 MIR 106 TE_peak all_peaks 1.0000000000
3708 Simple_repeat 10 not_TE_peak all_peaks 0.1562500000
3709 L2 156 TE_peak all_peaks 0.6473029046
3710 <NA> NA not_TE_peak all_peaks NA
3711 L2 129 TE_peak all_peaks 1.0000000000
3712 Simple_repeat 59 TE_peak all_peaks 1.0000000000
3713 <NA> NA not_TE_peak all_peaks NA
3714 Simple_repeat 63 TE_peak all_peaks 1.0000000000
3715 Alu 160 TE_peak all_peaks 0.9467455621
3716 MIR 148 TE_peak all_peaks 0.9308176101
3717 MIR 89 not_TE_peak all_peaks 0.3920704846
3718 Low_complexity 78 TE_peak all_peaks 0.8764044944
3719 <NA> NA not_TE_peak all_peaks NA
3720 Simple_repeat 37 TE_peak all_peaks 1.0000000000
3721 <NA> NA not_TE_peak all_peaks NA
3722 hAT-Tip100 67 not_TE_peak all_peaks 0.3850574713
3723 MIR 12 not_TE_peak all_peaks 0.0594059406
3724 <NA> NA not_TE_peak all_peaks NA
3725 TcMar-Tigger 34 not_TE_peak all_peaks 0.1517857143
3726 <NA> NA not_TE_peak all_peaks NA
3727 <NA> NA not_TE_peak all_peaks NA
3728 Simple_repeat 18 TE_peak all_peaks 1.0000000000
3729 CR1 128 not_TE_peak all_peaks 0.4923076923
3730 MIR 93 TE_peak all_peaks 1.0000000000
3731 Alu 322 TE_peak all_peaks 1.0000000000
3732 <NA> NA not_TE_peak all_peaks NA
3733 L2 117 TE_peak all_peaks 1.0000000000
3734 Alu 164 TE_peak all_peaks 0.5521885522
3735 Alu 47 not_TE_peak all_peaks 0.3560606061
3736 L2 293 TE_peak all_peaks 1.0000000000
3737 L2 133 not_TE_peak all_peaks 0.3481675393
3738 MIR 71 TE_peak all_peaks 0.8160919540
3739 MIR 94 TE_peak all_peaks 0.7230769231
3740 Simple_repeat 26 TE_peak all_peaks 1.0000000000
3741 L2 55 TE_peak all_peaks 1.0000000000
3742 Simple_repeat 46 TE_peak all_peaks 1.0000000000
3743 MIR 35 TE_peak all_peaks 1.0000000000
3744 MIR 148 TE_peak all_peaks 1.0000000000
3745 MIR 130 TE_peak all_peaks 1.0000000000
3746 Alu 90 not_TE_peak all_peaks 0.2931596091
3747 L2 61 TE_peak all_peaks 1.0000000000
3748 L2 358 TE_peak all_peaks 1.0000000000
3749 Low_complexity 60 TE_peak all_peaks 1.0000000000
3750 hAT-Tip100 45 TE_peak all_peaks 0.5000000000
3751 L2 82 TE_peak all_peaks 1.0000000000
3752 <NA> NA not_TE_peak all_peaks NA
3753 Simple_repeat 33 TE_peak all_peaks 1.0000000000
3754 Simple_repeat 26 TE_peak all_peaks 1.0000000000
3755 <NA> NA not_TE_peak all_peaks NA
3756 MIR 6 not_TE_peak all_peaks 0.0821917808
3757 Simple_repeat 21 TE_peak all_peaks 1.0000000000
3758 L2 184 TE_peak all_peaks 1.0000000000
3759 MIR 212 TE_peak all_peaks 1.0000000000
3760 <NA> NA not_TE_peak all_peaks NA
3761 Simple_repeat 79 TE_peak all_peaks 0.9518072289
3762 MIR 63 TE_peak all_peaks 0.5833333333
3763 <NA> NA not_TE_peak all_peaks NA
3764 MIR 55 TE_peak all_peaks 1.0000000000
3765 MIR 119 TE_peak all_peaks 1.0000000000
3766 MIR 41 not_TE_peak all_peaks 0.3228346457
3767 Simple_repeat 17 TE_peak all_peaks 1.0000000000
3768 Low_complexity 40 TE_peak all_peaks 1.0000000000
3769 MIR 51 TE_peak all_peaks 0.8644067797
3770 Simple_repeat 136 TE_peak all_peaks 0.7683615819
3771 Simple_repeat 2 not_TE_peak all_peaks 0.0645161290
3772 <NA> NA not_TE_peak all_peaks NA
3773 Simple_repeat 29 TE_peak all_peaks 1.0000000000
3774 MIR 26 not_TE_peak all_peaks 0.1538461538
3775 Simple_repeat 28 TE_peak all_peaks 1.0000000000
3776 Simple_repeat 79 TE_peak all_peaks 1.0000000000
3777 Simple_repeat 107 TE_peak all_peaks 1.0000000000
3778 Simple_repeat 57 TE_peak all_peaks 1.0000000000
3779 Simple_repeat 116 TE_peak all_peaks 1.0000000000
3780 Low_complexity 40 TE_peak all_peaks 1.0000000000
3781 MIR 171 TE_peak all_peaks 1.0000000000
3782 MIR 87 TE_peak all_peaks 0.9354838710
3783 MIR 26 not_TE_peak all_peaks 0.3209876543
3784 <NA> NA not_TE_peak all_peaks NA
3785 Alu 45 not_TE_peak all_peaks 0.1446945338
3786 CR1 23 not_TE_peak all_peaks 0.1564625850
3787 MIR 112 TE_peak all_peaks 1.0000000000
3788 MIR 187 TE_peak all_peaks 1.0000000000
3789 ERVL 123 TE_peak all_peaks 1.0000000000
3790 MIR 57 TE_peak all_peaks 1.0000000000
3791 L2 218 not_TE_peak all_peaks 0.4208494208
3792 L2 260 TE_peak all_peaks 0.5241935484
3793 MIR 145 TE_peak all_peaks 0.9062500000
3794 MIR 85 TE_peak all_peaks 1.0000000000
3795 MIR 121 TE_peak all_peaks 1.0000000000
3796 <NA> NA not_TE_peak all_peaks NA
3797 <NA> NA not_TE_peak all_peaks NA
3798 Simple_repeat 52 TE_peak all_peaks 1.0000000000
3799 MIR 95 TE_peak all_peaks 1.0000000000
3800 ERVL 283 not_TE_peak all_peaks 0.2542677448
3801 ERVL 191 not_TE_peak all_peaks 0.4161220044
3802 ERV1 40 not_TE_peak all_peaks 0.3539823009
3803 ERVL 433 TE_peak all_peaks 0.5537084399
3804 ERV1 287 TE_peak all_peaks 0.5115864528
3805 Simple_repeat 55 TE_peak all_peaks 1.0000000000
3806 Low_complexity 40 TE_peak all_peaks 1.0000000000
3807 Simple_repeat 34 TE_peak all_peaks 1.0000000000
3808 <NA> NA not_TE_peak all_peaks NA
3809 L2 190 not_TE_peak all_peaks 0.4973821990
3810 <NA> NA not_TE_peak all_peaks NA
3811 <NA> NA not_TE_peak all_peaks NA
3812 ERVL 239 TE_peak all_peaks 0.7071005917
3813 ERVL 213 TE_peak all_peaks 0.8912133891
3814 Alu 64 not_TE_peak all_peaks 0.2044728435
3815 L2 69 TE_peak all_peaks 1.0000000000
3816 L2 4 not_TE_peak all_peaks 0.0310077519
3817 SVA 101 not_TE_peak all_peaks 0.0954631380
3818 MIR 165 TE_peak all_peaks 1.0000000000
3819 <NA> NA not_TE_peak all_peaks NA
3820 Low_complexity 103 TE_peak all_peaks 1.0000000000
3821 MIR 148 TE_peak all_peaks 1.0000000000
3822 L2 52 TE_peak all_peaks 1.0000000000
3823 L2 71 TE_peak all_peaks 1.0000000000
3824 Simple_repeat 42 TE_peak all_peaks 1.0000000000
3825 CR1 125 TE_peak all_peaks 0.6097560976
3826 Alu 93 not_TE_peak all_peaks 0.3263157895
3827 Alu 164 TE_peak all_peaks 0.5324675325
3828 L2 37 not_TE_peak all_peaks 0.4683544304
3829 <NA> NA not_TE_peak all_peaks NA
3830 <NA> NA not_TE_peak all_peaks NA
3831 L2 177 TE_peak all_peaks 1.0000000000
3832 <NA> NA not_TE_peak all_peaks NA
3833 hAT-Charlie 2 not_TE_peak all_peaks 0.0202020202
3834 MIR 101 TE_peak all_peaks 1.0000000000
3835 L1 122 TE_peak all_peaks 1.0000000000
3836 ERVL-MaLR 365 TE_peak all_peaks 1.0000000000
3837 Alu 225 TE_peak all_peaks 0.9146341463
3838 Alu 69 not_TE_peak all_peaks 0.3575129534
3839 TcMar-Tigger 159 TE_peak all_peaks 1.0000000000
3840 TcMar-Tigger 106 TE_peak all_peaks 1.0000000000
3841 Alu 156 TE_peak all_peaks 0.5182724252
3842 <NA> NA not_TE_peak all_peaks NA
3843 TcMar-Tigger 75 not_TE_peak all_peaks 0.4629629630
3844 Alu 303 TE_peak all_peaks 1.0000000000
3845 TcMar-Tigger 206 TE_peak all_peaks 0.6732026144
3846 <NA> NA not_TE_peak all_peaks NA
3847 MIR 70 TE_peak all_peaks 1.0000000000
3848 Alu 175 TE_peak all_peaks 1.0000000000
3849 MIR 182 TE_peak all_peaks 1.0000000000
3850 MIR 65 TE_peak all_peaks 1.0000000000
3851 Alu 74 not_TE_peak all_peaks 0.2491582492
3852 L2 21 not_TE_peak all_peaks 0.0364583333
3853 Alu 9 not_TE_peak all_peaks 0.0279503106
3854 hAT-Charlie 67 TE_peak all_peaks 1.0000000000
3855 MIR 234 TE_peak all_peaks 1.0000000000
3856 MIR 62 TE_peak all_peaks 1.0000000000
3857 <NA> NA not_TE_peak all_peaks NA
3858 Alu 68 not_TE_peak all_peaks 0.3349753695
3859 Alu 9 not_TE_peak all_peaks 0.0625000000
3860 MIR 160 TE_peak all_peaks 1.0000000000
3861 L2 32 TE_peak all_peaks 1.0000000000
3862 MIR 223 TE_peak all_peaks 1.0000000000
3863 Alu 107 not_TE_peak all_peaks 0.3440514469
3864 Simple_repeat 32 TE_peak all_peaks 1.0000000000
3865 Simple_repeat 21 TE_peak all_peaks 0.5384615385
3866 L1 5 not_TE_peak all_peaks 0.0314465409
3867 L1 168 TE_peak all_peaks 1.0000000000
3868 Simple_repeat 30 TE_peak all_peaks 1.0000000000
3869 MIR 100 TE_peak all_peaks 1.0000000000
3870 Simple_repeat 50 TE_peak all_peaks 1.0000000000
3871 Alu 42 not_TE_peak all_peaks 0.3181818182
3872 Simple_repeat 22 TE_peak all_peaks 1.0000000000
3873 <NA> NA not_TE_peak all_peaks NA
3874 L2 14 not_TE_peak all_peaks 0.1458333333
3875 MIR 94 TE_peak all_peaks 1.0000000000
3876 ERVL 64 TE_peak all_peaks 1.0000000000
3877 Alu 76 TE_peak all_peaks 0.5937500000
3878 <NA> NA not_TE_peak all_peaks NA
3879 Alu 146 TE_peak all_peaks 0.9480519481
3880 Simple_repeat 32 TE_peak all_peaks 1.0000000000
3881 MIR 141 TE_peak all_peaks 0.9155844156
3882 MIR 154 TE_peak all_peaks 1.0000000000
3883 Simple_repeat 83 TE_peak all_peaks 1.0000000000
3884 Simple_repeat 41 TE_peak all_peaks 1.0000000000
3885 <NA> NA not_TE_peak all_peaks NA
3886 MIR 160 TE_peak all_peaks 0.8121827411
3887 MIR 21 not_TE_peak all_peaks 0.2658227848
3888 MIR 45 not_TE_peak all_peaks 0.2678571429
3889 <NA> NA not_TE_peak all_peaks NA
3890 MIR 97 TE_peak all_peaks 1.0000000000
3891 <NA> NA not_TE_peak all_peaks NA
3892 Alu 10 not_TE_peak all_peaks 0.0340136054
3893 Alu 307 TE_peak all_peaks 1.0000000000
3894 Alu 141 TE_peak all_peaks 1.0000000000
3895 Alu 143 not_TE_peak all_peaks 0.4612903226
3896 Alu 96 not_TE_peak all_peaks 0.4016736402
3897 TcMar-Mariner 116 TE_peak all_peaks 1.0000000000
3898 Alu 39 not_TE_peak all_peaks 0.3679245283
3899 Alu 99 not_TE_peak all_peaks 0.3355932203
3900 L1 226 TE_peak all_peaks 1.0000000000
3901 Simple_repeat 30 TE_peak all_peaks 1.0000000000
3902 Alu 44 not_TE_peak all_peaks 0.1605839416
3903 MIR 102 TE_peak all_peaks 0.6455696203
3904 Alu 200 TE_peak all_peaks 0.6622516556
3905 L2 52 TE_peak all_peaks 1.0000000000
3906 MIR 160 TE_peak all_peaks 1.0000000000
3907 L2 44 TE_peak all_peaks 1.0000000000
3908 <NA> NA not_TE_peak all_peaks NA
3909 <NA> NA not_TE_peak all_peaks NA
3910 L1 94 TE_peak all_peaks 0.7121212121
3911 TcMar-Tigger 362 TE_peak all_peaks 1.0000000000
3912 Alu 148 TE_peak all_peaks 0.5068493151
3913 Alu 207 TE_peak all_peaks 0.7137931034
3914 ERV1 305 TE_peak all_peaks 0.7682619647
3915 ERVL 328 TE_peak all_peaks 0.7922705314
3916 Simple_repeat 19 TE_peak all_peaks 1.0000000000
3917 L1 39 not_TE_peak all_peaks 0.2516129032
3918 TcMar-Tigger 284 TE_peak all_peaks 0.5472061657
3919 Alu 28 not_TE_peak all_peaks 0.0897435897
3920 Alu 230 TE_peak all_peaks 0.7641196013
3921 MIR 132 TE_peak all_peaks 1.0000000000
3922 Alu 233 TE_peak all_peaks 0.7792642140
3923 Alu 107 not_TE_peak all_peaks 0.3440514469
3924 ERVL-MaLR 305 TE_peak all_peaks 1.0000000000
3925 ERVL-MaLR 341 TE_peak all_peaks 0.7893518519
3926 Alu 191 TE_peak all_peaks 1.0000000000
3927 Alu 89 TE_peak all_peaks 0.6846153846
3928 Alu 182 TE_peak all_peaks 0.6275862069
3929 L2 120 TE_peak all_peaks 1.0000000000
3930 Alu 123 not_TE_peak all_peaks 0.4006514658
3931 Alu 149 not_TE_peak all_peaks 0.4983277592
3932 Alu 297 TE_peak all_peaks 1.0000000000
3933 Alu 165 TE_peak all_peaks 0.9375000000
3934 snRNA 207 TE_peak all_peaks 1.0000000000
3935 Alu 121 not_TE_peak all_peaks 0.3980263158
3936 L2 58 not_TE_peak all_peaks 0.3866666667
3937 Simple_repeat 41 TE_peak all_peaks 1.0000000000
3938 L2 257 TE_peak all_peaks 0.9244604317
3939 <NA> NA not_TE_peak all_peaks NA
3940 Alu 55 not_TE_peak all_peaks 0.3273809524
3941 ERVK 627 TE_peak all_peaks 0.6905286344
3942 Alu 111 not_TE_peak all_peaks 0.4036363636
3943 Simple_repeat 39 TE_peak all_peaks 1.0000000000
3944 MIR 28 TE_peak all_peaks 0.9333333333
3945 MIR 133 TE_peak all_peaks 1.0000000000
3946 MIR 48 TE_peak all_peaks 0.5000000000
3947 Alu 46 not_TE_peak all_peaks 0.1900826446
3948 MIR 119 TE_peak all_peaks 1.0000000000
3949 MIR 120 TE_peak all_peaks 1.0000000000
3950 L2 79 TE_peak all_peaks 1.0000000000
3951 Simple_repeat 15 not_TE_peak all_peaks 0.2830188679
3952 Simple_repeat 20 not_TE_peak all_peaks 0.3773584906
3953 MIR 101 TE_peak all_peaks 1.0000000000
3954 Low_complexity 76 TE_peak all_peaks 1.0000000000
3955 Alu 5 not_TE_peak all_peaks 0.0194552529
3956 L2 77 TE_peak all_peaks 1.0000000000
3957 MIR 80 TE_peak all_peaks 1.0000000000
3958 RTE-BovB 58 TE_peak all_peaks 1.0000000000
3959 MIR 115 TE_peak all_peaks 1.0000000000
3960 L2 53 TE_peak all_peaks 1.0000000000
3961 MIR 61 not_TE_peak all_peaks 0.3742331288
3962 Alu 141 not_TE_peak all_peaks 0.4779661017
3963 Alu 146 TE_peak all_peaks 1.0000000000
3964 Alu 186 TE_peak all_peaks 1.0000000000
3965 L1 11 not_TE_peak all_peaks 0.3437500000
3966 Alu 66 not_TE_peak all_peaks 0.4962406015
3967 ERVL 441 not_TE_peak all_peaks 0.4783080260
3968 MIR 77 TE_peak all_peaks 1.0000000000
3969 Simple_repeat 38 TE_peak all_peaks 1.0000000000
3970 Low_complexity 111 TE_peak all_peaks 1.0000000000
3971 hAT-Blackjack 205 TE_peak all_peaks 1.0000000000
3972 <NA> NA not_TE_peak all_peaks NA
3973 Simple_repeat 28 TE_peak all_peaks 1.0000000000
3974 Alu 225 TE_peak all_peaks 0.7500000000
3975 Alu 152 TE_peak all_peaks 1.0000000000
3976 L2 214 TE_peak all_peaks 1.0000000000
3977 MIR 97 TE_peak all_peaks 1.0000000000
3978 hAT-Blackjack 91 TE_peak all_peaks 1.0000000000
3979 Alu 61 not_TE_peak all_peaks 0.2033333333
3980 Alu 261 TE_peak all_peaks 0.8529411765
3981 Alu 37 not_TE_peak all_peaks 0.1340579710
3982 <NA> NA not_TE_peak all_peaks NA
3983 L2 60 TE_peak all_peaks 1.0000000000
3984 Low_complexity 32 TE_peak all_peaks 1.0000000000
3985 Alu 308 TE_peak all_peaks 1.0000000000
3986 Alu 59 not_TE_peak all_peaks 0.2084805654
3987 <NA> NA not_TE_peak all_peaks NA
3988 MIR 145 TE_peak all_peaks 0.6066945607
3989 Low_complexity 106 TE_peak all_peaks 1.0000000000
3990 Alu 10 not_TE_peak all_peaks 0.0359712230
3991 Simple_repeat 12 not_TE_peak all_peaks 0.4137931034
3992 TcMar-Tigger 110 not_TE_peak all_peaks 0.2178217822
3993 Alu 168 TE_peak all_peaks 1.0000000000
3994 Alu 29 not_TE_peak all_peaks 0.0979729730
3995 Alu 127 not_TE_peak all_peaks 0.4319727891
3996 Alu 211 TE_peak all_peaks 0.9134199134
3997 ERVL-MaLR 55 TE_peak all_peaks 0.7746478873
3998 L2 294 TE_peak all_peaks 1.0000000000
3999 MIR 39 not_TE_peak all_peaks 0.3482142857
4000 Alu 254 TE_peak all_peaks 0.8552188552
4001 ERVL-MaLR 77 TE_peak all_peaks 1.0000000000
4002 MIR 92 TE_peak all_peaks 1.0000000000
4003 MIR 162 TE_peak all_peaks 1.0000000000
4004 MIR 55 not_TE_peak all_peaks 0.3548387097
4005 L2 133 TE_peak all_peaks 1.0000000000
4006 Simple_repeat 90 TE_peak all_peaks 1.0000000000
4007 Simple_repeat 50 TE_peak all_peaks 1.0000000000
4008 tRNA-Deu 73 TE_peak all_peaks 1.0000000000
4009 Simple_repeat 55 TE_peak all_peaks 1.0000000000
4010 Simple_repeat 53 TE_peak all_peaks 1.0000000000
4011 MIR 26 not_TE_peak all_peaks 0.2096774194
4012 Simple_repeat 26 TE_peak all_peaks 1.0000000000
4013 Simple_repeat 80 TE_peak all_peaks 1.0000000000
4014 Alu 9 not_TE_peak all_peaks 0.0277777778
4015 Alu 230 TE_peak all_peaks 0.7931034483
4016 MULE-MuDR 428 not_TE_peak all_peaks 0.2419446015
4017 ERV1 296 not_TE_peak all_peaks 0.3466042155
4018 L2 359 TE_peak all_peaks 0.9324675325
4019 scRNA 99 TE_peak all_peaks 1.0000000000
4020 L1 58 not_TE_peak all_peaks 0.1661891117
4021 MIR 90 TE_peak all_peaks 0.5357142857
4022 L2 52 TE_peak all_peaks 0.5473684211
4023 hAT-Charlie 180 TE_peak all_peaks 0.9944751381
4024 L2 394 TE_peak all_peaks 0.8259958071
4025 L2 66 TE_peak all_peaks 1.0000000000
4026 MIR 115 TE_peak all_peaks 1.0000000000
4027 MIR 163 TE_peak all_peaks 1.0000000000
4028 <NA> NA not_TE_peak all_peaks NA
4029 Simple_repeat 80 TE_peak all_peaks 1.0000000000
4030 Simple_repeat 41 TE_peak all_peaks 1.0000000000
4031 Low_complexity 42 TE_peak all_peaks 0.9333333333
4032 <NA> NA not_TE_peak all_peaks NA
4033 MIR 89 not_TE_peak all_peaks 0.4564102564
4034 ERVK 576 TE_peak all_peaks 1.0000000000
4035 Simple_repeat 63 TE_peak all_peaks 1.0000000000
4036 MIR 145 TE_peak all_peaks 0.6531531532
4037 Alu 153 TE_peak all_peaks 0.5016393443
4038 hAT-Charlie 39 TE_peak all_peaks 1.0000000000
4039 MIR 93 TE_peak all_peaks 1.0000000000
4040 MIR 117 TE_peak all_peaks 1.0000000000
4041 MIR 103 TE_peak all_peaks 1.0000000000
4042 MIR 157 TE_peak all_peaks 0.7201834862
4043 MIR 153 TE_peak all_peaks 1.0000000000
4044 L2 202 TE_peak all_peaks 0.6372239748
4045 hAT-Charlie 230 TE_peak all_peaks 1.0000000000
4046 L2 265 TE_peak all_peaks 1.0000000000
4047 MIR 108 TE_peak all_peaks 1.0000000000
4048 Alu 54 not_TE_peak all_peaks 0.1806020067
4049 L2 40 TE_peak all_peaks 0.6779661017
4050 Alu 155 not_TE_peak all_peaks 0.4967948718
4051 MIR 34 TE_peak all_peaks 0.5862068966
4052 CR1 30 not_TE_peak all_peaks 0.1224489796
4053 Simple_repeat 47 TE_peak all_peaks 1.0000000000
4054 Simple_repeat 55 TE_peak all_peaks 1.0000000000
4055 Simple_repeat 33 TE_peak all_peaks 1.0000000000
4056 <NA> NA not_TE_peak all_peaks NA
4057 <NA> NA not_TE_peak all_peaks NA
4058 Simple_repeat 7 not_TE_peak all_peaks 0.1707317073
4059 <NA> NA not_TE_peak all_peaks NA
4060 Low_complexity 63 TE_peak all_peaks 1.0000000000
4061 hAT-Charlie 250 TE_peak all_peaks 1.0000000000
4062 <NA> NA not_TE_peak all_peaks NA
4063 MIR 54 not_TE_peak all_peaks 0.2231404959
4064 CR1 480 TE_peak all_peaks 0.9504950495
4065 TcMar-Tigger 144 not_TE_peak all_peaks 0.3945205479
4066 MIR 78 not_TE_peak all_peaks 0.3157894737
4067 L2 412 TE_peak all_peaks 1.0000000000
4068 <NA> NA not_TE_peak all_peaks NA
4069 ERVL 459 TE_peak all_peaks 0.6194331984
4070 <NA> NA not_TE_peak all_peaks NA
4071 <NA> NA not_TE_peak all_peaks NA
4072 MIR 41 not_TE_peak all_peaks 0.2770270270
4073 L2 163 not_TE_peak all_peaks 0.4034653465
4074 Simple_repeat 14 not_TE_peak all_peaks 0.2058823529
4075 CR1 178 not_TE_peak all_peaks 0.3625254582
4076 MIR 107 not_TE_peak all_peaks 0.4403292181
4077 ERVL-MaLR 109 TE_peak all_peaks 1.0000000000
4078 ERVL-MaLR 221 TE_peak all_peaks 1.0000000000
4079 Low_complexity 34 TE_peak all_peaks 0.9714285714
4080 ERVL-MaLR 175 TE_peak all_peaks 1.0000000000
4081 L2 158 TE_peak all_peaks 1.0000000000
4082 hAT-Tip100 17 not_TE_peak all_peaks 0.1954022989
4083 MIR 29 not_TE_peak all_peaks 0.1946308725
4084 Simple_repeat 680 TE_peak all_peaks 0.9590973202
4085 ERV1 63 TE_peak all_peaks 1.0000000000
4086 ERV1 278 not_TE_peak all_peaks 0.4058394161
4087 L1 541 TE_peak all_peaks 0.8560126582
4088 <NA> NA not_TE_peak all_peaks NA
4089 MIR 171 TE_peak all_peaks 1.0000000000
4090 ERVL-MaLR 73 not_TE_peak all_peaks 0.4371257485
4091 ERVL-MaLR 68 not_TE_peak all_peaks 0.2085889571
4092 MIR 107 TE_peak all_peaks 1.0000000000
4093 L1 515 TE_peak all_peaks 0.8818493151
4094 Low_complexity 46 TE_peak all_peaks 1.0000000000
4095 Simple_repeat 6 TE_peak all_peaks 1.0000000000
4096 <NA> NA not_TE_peak all_peaks NA
4097 Low_complexity 32 not_TE_peak all_peaks 0.0816326531
4098 MIR 119 TE_peak all_peaks 1.0000000000
4099 hAT-Charlie 68 not_TE_peak all_peaks 0.3597883598
4100 ERVL 429 TE_peak all_peaks 0.6630602782
4101 L2 91 TE_peak all_peaks 0.5870967742
4102 <NA> NA not_TE_peak all_peaks NA
4103 Simple_repeat 64 TE_peak all_peaks 1.0000000000
4104 Simple_repeat 744 TE_peak all_peaks 0.6979362101
4105 MIR 85 TE_peak all_peaks 1.0000000000
4106 ERVL-MaLR 3 not_TE_peak all_peaks 0.0107913669
4107 ERVL 259 TE_peak all_peaks 0.6410891089
4108 <NA> NA not_TE_peak all_peaks NA
4109 Simple_repeat 31 TE_peak all_peaks 1.0000000000
4110 L1 55 not_TE_peak all_peaks 0.1428571429
4111 L2 292 not_TE_peak all_peaks 0.1727810651
4112 <NA> NA not_TE_peak all_peaks NA
4113 MIR 143 TE_peak all_peaks 0.5789473684
4114 MIR 158 TE_peak all_peaks 1.0000000000
4115 <NA> NA not_TE_peak all_peaks NA
4116 <NA> NA not_TE_peak all_peaks NA
4117 MIR 98 TE_peak all_peaks 1.0000000000
4118 MIR 34 not_TE_peak all_peaks 0.1818181818
4119 MIR 75 not_TE_peak all_peaks 0.4010695187
4120 MIR 218 TE_peak all_peaks 1.0000000000
4121 MIR 32 TE_peak all_peaks 1.0000000000
4122 PiggyBac 128 TE_peak all_peaks 1.0000000000
4123 MIR 174 TE_peak all_peaks 1.0000000000
4124 ERVL 117 TE_peak all_peaks 0.8540145985
4125 MIR 54 TE_peak all_peaks 1.0000000000
4126 Simple_repeat 25 TE_peak all_peaks 1.0000000000
4127 Simple_repeat 76 TE_peak all_peaks 0.9156626506
4128 MIR 111 TE_peak all_peaks 1.0000000000
4129 ERVL-MaLR 272 TE_peak all_peaks 0.6181818182
4130 L2 67 TE_peak all_peaks 0.5630252101
4131 MIR 118 TE_peak all_peaks 1.0000000000
4132 ERVL-MaLR 48 not_TE_peak all_peaks 0.2874251497
4133 Alu 55 not_TE_peak all_peaks 0.1833333333
4134 hAT-Tip100 302 TE_peak all_peaks 1.0000000000
4135 MIR 220 TE_peak all_peaks 1.0000000000
4136 MIR 23 not_TE_peak all_peaks 0.1455696203
4137 Simple_repeat 34 TE_peak all_peaks 1.0000000000
4138 Low_complexity 14 not_TE_peak all_peaks 0.3888888889
4139 MIR 131 TE_peak all_peaks 1.0000000000
4140 MIR 77 TE_peak all_peaks 1.0000000000
4141 <NA> NA not_TE_peak all_peaks NA
4142 L2 92 TE_peak all_peaks 0.5859872611
4143 L1 131 TE_peak all_peaks 0.5077519380
4144 MIR 80 TE_peak all_peaks 0.9195402299
4145 MIR 87 TE_peak all_peaks 1.0000000000
4146 hAT-Charlie 294 TE_peak all_peaks 1.0000000000
4147 <NA> NA not_TE_peak all_peaks NA
4148 L2 80 not_TE_peak all_peaks 0.2332361516
4149 MIR 252 TE_peak all_peaks 1.0000000000
4150 ERVL 224 TE_peak all_peaks 0.6686567164
4151 L2 73 TE_peak all_peaks 0.6239316239
4152 L2 95 TE_peak all_peaks 1.0000000000
4153 MIR 39 TE_peak all_peaks 1.0000000000
4154 ERVL 84 not_TE_peak all_peaks 0.1842105263
4155 ERVL 11 not_TE_peak all_peaks 0.0209523810
4156 L2 61 TE_peak all_peaks 1.0000000000
4157 MIR 15 not_TE_peak all_peaks 0.1020408163
4158 <NA> NA not_TE_peak all_peaks NA
4159 L2 100 TE_peak all_peaks 0.7874015748
4160 ERV1 61 not_TE_peak all_peaks 0.0966719493
4161 MIR 40 not_TE_peak all_peaks 0.2209944751
4162 MIR 188 TE_peak all_peaks 1.0000000000
4163 <NA> NA not_TE_peak all_peaks NA
4164 hAT-Tip100 87 TE_peak all_peaks 1.0000000000
4165 L2 107 TE_peak all_peaks 1.0000000000
4166 Alu 11 not_TE_peak all_peaks 0.0364238411
4167 Simple_repeat 61 TE_peak all_peaks 1.0000000000
4168 ERVL-MaLR 164 TE_peak all_peaks 1.0000000000
4169 <NA> NA not_TE_peak all_peaks NA
4170 L2 426 not_TE_peak all_peaks 0.3349056604
4171 MIR 82 TE_peak all_peaks 1.0000000000
4172 MIR 201 TE_peak all_peaks 1.0000000000
4173 L1 53 TE_peak all_peaks 0.8833333333
4174 <NA> NA not_TE_peak all_peaks NA
4175 <NA> NA not_TE_peak all_peaks NA
4176 Simple_repeat 106 TE_peak all_peaks 1.0000000000
4177 CR1 61 TE_peak all_peaks 1.0000000000
4178 Simple_repeat 8 not_TE_peak all_peaks 0.0322580645
4179 MIR 93 not_TE_peak all_peaks 0.3522727273
4180 CR1 92 TE_peak all_peaks 1.0000000000
4181 MIR 49 TE_peak all_peaks 1.0000000000
4182 MIR 25 not_TE_peak all_peaks 0.1760563380
4183 Alu 268 TE_peak all_peaks 1.0000000000
4184 Simple_repeat 58 TE_peak all_peaks 1.0000000000
4185 MIR 23 not_TE_peak all_peaks 0.1411042945
4186 ERVL-MaLR 192 TE_peak all_peaks 0.5408450704
4187 MIR 22 not_TE_peak all_peaks 0.2417582418
4188 MIR 105 TE_peak all_peaks 1.0000000000
4189 L1 39 TE_peak all_peaks 1.0000000000
4190 Alu 48 not_TE_peak all_peaks 0.1553398058
4191 Simple_repeat 14 not_TE_peak all_peaks 0.2800000000
4192 MIR 156 TE_peak all_peaks 1.0000000000
4193 MIR 85 not_TE_peak all_peaks 0.3148148148
4194 hAT-Charlie 248 TE_peak all_peaks 0.7923322684
4195 MIR 106 TE_peak all_peaks 1.0000000000
4196 MIR 49 TE_peak all_peaks 0.7000000000
4197 MIR 205 TE_peak all_peaks 0.8039215686
4198 L1 135 not_TE_peak all_peaks 0.3068181818
4199 L2 297 TE_peak all_peaks 1.0000000000
4200 Gypsy? 186 TE_peak all_peaks 1.0000000000
4201 L2 76 TE_peak all_peaks 1.0000000000
4202 MIR 127 TE_peak all_peaks 1.0000000000
4203 MIR 99 TE_peak all_peaks 1.0000000000
4204 L2 228 not_TE_peak all_peaks 0.4261682243
4205 L2 44 not_TE_peak all_peaks 0.1803278689
4206 L2 48 not_TE_peak all_peaks 0.0690647482
4207 MIR 110 TE_peak all_peaks 0.7189542484
4208 Simple_repeat 30 TE_peak all_peaks 1.0000000000
4209 Simple_repeat 45 not_TE_peak all_peaks 0.4787234043
4210 ERVL-MaLR 155 not_TE_peak all_peaks 0.3546910755
4211 Simple_repeat 55 TE_peak all_peaks 1.0000000000
4212 MIR 108 TE_peak all_peaks 0.6067415730
4213 L2 105 TE_peak all_peaks 0.9292035398
4214 Simple_repeat 41 TE_peak all_peaks 1.0000000000
4215 L2 128 TE_peak all_peaks 1.0000000000
4216 L2 128 TE_peak all_peaks 1.0000000000
4217 MIR 107 TE_peak all_peaks 1.0000000000
4218 Simple_repeat 23 TE_peak all_peaks 1.0000000000
4219 Simple_repeat 221 not_TE_peak all_peaks 0.3536000000
4220 <NA> NA not_TE_peak all_peaks NA
4221 Simple_repeat 34 TE_peak all_peaks 1.0000000000
4222 Simple_repeat 29 TE_peak all_peaks 1.0000000000
4223 Simple_repeat 28 TE_peak all_peaks 1.0000000000
4224 Simple_repeat 41 TE_peak all_peaks 1.0000000000
4225 Low_complexity 34 TE_peak all_peaks 0.6938775510
4226 Low_complexity 39 TE_peak all_peaks 1.0000000000
4227 Simple_repeat 36 TE_peak all_peaks 1.0000000000
4228 CR1 174 TE_peak all_peaks 1.0000000000
4229 MIR 148 TE_peak all_peaks 1.0000000000
4230 MIR 136 TE_peak all_peaks 0.6098654709
4231 Simple_repeat 57 TE_peak all_peaks 1.0000000000
4232 MIR 166 TE_peak all_peaks 1.0000000000
4233 L2 58 TE_peak all_peaks 0.9206349206
4234 <NA> NA not_TE_peak all_peaks NA
4235 <NA> NA not_TE_peak all_peaks NA
4236 Alu 188 TE_peak all_peaks 0.7258687259
4237 Alu 64 not_TE_peak all_peaks 0.2140468227
4238 <NA> NA not_TE_peak all_peaks NA
4239 <NA> NA not_TE_peak all_peaks NA
4240 Alu 110 not_TE_peak all_peaks 0.3859649123
4241 TcMar-Tigger 183 TE_peak all_peaks 0.5462686567
4242 <NA> NA not_TE_peak all_peaks NA
4243 <NA> NA not_TE_peak all_peaks NA
4244 <NA> NA not_TE_peak all_peaks NA
4245 ERVL-MaLR 299 TE_peak all_peaks 1.0000000000
4246 ERVL-MaLR 259 TE_peak all_peaks 1.0000000000
4247 Alu 94 not_TE_peak all_peaks 0.3468634686
4248 Alu 227 TE_peak all_peaks 0.7183544304
4249 Alu 65 TE_peak all_peaks 0.5284552846
4250 L2 64 TE_peak all_peaks 1.0000000000
4251 ERVL-MaLR 174 not_TE_peak all_peaks 0.4223300971
4252 Alu 32 not_TE_peak all_peaks 0.1118881119
4253 MIR 135 TE_peak all_peaks 0.7584269663
4254 <NA> NA not_TE_peak all_peaks NA
4255 L2 113 not_TE_peak all_peaks 0.4312977099
4256 Alu 337 TE_peak all_peaks 1.0000000000
4257 L2 55 TE_peak all_peaks 1.0000000000
4258 MIR 92 TE_peak all_peaks 0.9200000000
4259 Alu 55 not_TE_peak all_peaks 0.1839464883
4260 Alu 164 TE_peak all_peaks 1.0000000000
4261 Simple_repeat 48 TE_peak all_peaks 1.0000000000
4262 Gypsy 103 TE_peak all_peaks 1.0000000000
4263 hAT-Blackjack 192 TE_peak all_peaks 1.0000000000
4264 MIR 147 TE_peak all_peaks 0.6837209302
4265 L1 116 TE_peak all_peaks 0.7682119205
4266 L2 52 TE_peak all_peaks 1.0000000000
4267 MIR 98 TE_peak all_peaks 1.0000000000
4268 Alu 42 not_TE_peak all_peaks 0.1538461538
4269 ERV1 207 TE_peak all_peaks 0.7527272727
4270 L2 64 TE_peak all_peaks 1.0000000000
4271 L1 117 TE_peak all_peaks 1.0000000000
4272 L1 28 not_TE_peak all_peaks 0.1656804734
4273 MIR 113 TE_peak all_peaks 0.6141304348
4274 Low_complexity 222 TE_peak all_peaks 0.8638132296
4275 MIR 111 TE_peak all_peaks 1.0000000000
4276 ERV1 55 not_TE_peak all_peaks 0.1692307692
4277 Alu 199 TE_peak all_peaks 0.6589403974
4278 MIR 17 TE_peak all_peaks 1.0000000000
4279 Simple_repeat 14 not_TE_peak all_peaks 0.2978723404
4280 Alu 85 not_TE_peak all_peaks 0.2750809061
4281 MIR 140 TE_peak all_peaks 1.0000000000
4282 ERV1 51 not_TE_peak all_peaks 0.2512315271
4283 Simple_repeat 6 not_TE_peak all_peaks 0.1818181818
4284 <NA> NA not_TE_peak all_peaks NA
4285 MIR 66 not_TE_peak all_peaks 0.2650602410
4286 hAT-Charlie 84 TE_peak all_peaks 1.0000000000
4287 hAT-Charlie 64 TE_peak all_peaks 1.0000000000
4288 L2 67 TE_peak all_peaks 1.0000000000
4289 MIR 78 TE_peak all_peaks 1.0000000000
4290 MIR 90 not_TE_peak all_peaks 0.4411764706
4291 CR1 120 TE_peak all_peaks 1.0000000000
4292 Simple_repeat 48 TE_peak all_peaks 1.0000000000
4293 Simple_repeat 90 TE_peak all_peaks 1.0000000000
4294 Simple_repeat 53 TE_peak all_peaks 1.0000000000
4295 Simple_repeat 33 TE_peak all_peaks 1.0000000000
4296 Low_complexity 82 TE_peak all_peaks 1.0000000000
4297 MIR 96 not_TE_peak all_peaks 0.4285714286
4298 MIR 216 TE_peak all_peaks 0.9773755656
4299 MIR 199 TE_peak all_peaks 1.0000000000
4300 Alu 39 not_TE_peak all_peaks 0.1335616438
4301 L2 69 TE_peak all_peaks 1.0000000000
4302 L2 145 not_TE_peak all_peaks 0.2230769231
4303 TcMar-Tigger 359 not_TE_peak all_peaks 0.4864498645
4304 RTE-X 41 TE_peak all_peaks 1.0000000000
4305 Alu 158 TE_peak all_peaks 1.0000000000
4306 Alu 41 not_TE_peak all_peaks 0.1366666667
4307 Simple_repeat 39 TE_peak all_peaks 1.0000000000
4308 <NA> NA not_TE_peak all_peaks NA
4309 <NA> NA not_TE_peak all_peaks NA
4310 MIR 144 TE_peak all_peaks 1.0000000000
4311 MIR 107 TE_peak all_peaks 1.0000000000
4312 L2 331 TE_peak all_peaks 1.0000000000
4313 L2 244 TE_peak all_peaks 1.0000000000
4314 ERVL-MaLR 116 TE_peak all_peaks 0.5296803653
4315 hAT-Tip100 28 not_TE_peak all_peaks 0.2886597938
4316 MIR 29 not_TE_peak all_peaks 0.2871287129
4317 MIR 150 TE_peak all_peaks 1.0000000000
4318 MIR 130 TE_peak all_peaks 1.0000000000
4319 Alu 77 not_TE_peak all_peaks 0.2452229299
4320 hAT-Tip100 2 not_TE_peak all_peaks 0.0645161290
4321 Simple_repeat 32 TE_peak all_peaks 1.0000000000
4322 Simple_repeat 78 TE_peak all_peaks 1.0000000000
4323 L2 157 not_TE_peak all_peaks 0.4577259475
4324 L2 168 TE_peak all_peaks 0.8795811518
4325 L2 98 TE_peak all_peaks 0.7596899225
4326 ERV1 250 TE_peak all_peaks 0.5219206681
4327 MIR 79 TE_peak all_peaks 1.0000000000
4328 <NA> NA not_TE_peak all_peaks NA
4329 hAT-Tip100 183 TE_peak all_peaks 0.6654545455
4330 MIR 47 TE_peak all_peaks 1.0000000000
4331 ERV1 930 not_TE_peak all_peaks 0.2896293989
4332 ERV1 415 not_TE_peak all_peaks 0.1292432264
4333 L2 17 not_TE_peak all_peaks 0.0395348837
4334 MIR 44 TE_peak all_peaks 1.0000000000
4335 L2 364 TE_peak all_peaks 1.0000000000
4336 hAT? 408 TE_peak all_peaks 0.8680851064
4337 ERV1 423 TE_peak all_peaks 0.6229749632
4338 MIR 105 TE_peak all_peaks 0.6862745098
4339 MIR 65 TE_peak all_peaks 1.0000000000
4340 L2 15 not_TE_peak all_peaks 0.0602409639
4341 Alu 106 not_TE_peak all_peaks 0.3521594684
4342 Alu 88 not_TE_peak all_peaks 0.3098591549
4343 <NA> NA not_TE_peak all_peaks NA
4344 <NA> NA not_TE_peak all_peaks NA
4345 MIR 53 TE_peak all_peaks 1.0000000000
4346 L2 7 not_TE_peak all_peaks 0.0212765957
4347 MIR 143 TE_peak all_peaks 1.0000000000
4348 Simple_repeat 55 TE_peak all_peaks 1.0000000000
4349 L2 24 TE_peak all_peaks 0.8571428571
4350 MIR 127 TE_peak all_peaks 1.0000000000
4351 Alu 78 TE_peak all_peaks 0.6190476190
4352 Simple_repeat 21 TE_peak all_peaks 0.8076923077
4353 <NA> NA not_TE_peak all_peaks NA
4354 <NA> NA not_TE_peak all_peaks NA
4355 CR1 133 not_TE_peak all_peaks 0.3085846868
4356 <NA> NA not_TE_peak all_peaks NA
4357 ERVL-MaLR 265 TE_peak all_peaks 1.0000000000
4358 L2 92 TE_peak all_peaks 0.5822784810
4359 L2 397 TE_peak all_peaks 0.9778325123
4360 MIR 10 not_TE_peak all_peaks 0.0793650794
4361 L2 580 TE_peak all_peaks 0.8695652174
4362 L2 82 not_TE_peak all_peaks 0.3153846154
4363 Simple_repeat 55 TE_peak all_peaks 1.0000000000
4364 MIR 38 not_TE_peak all_peaks 0.3689320388
4365 L2 370 TE_peak all_peaks 1.0000000000
4366 L2 261 TE_peak all_peaks 0.8030769231
4367 <NA> NA not_TE_peak all_peaks NA
4368 L2 29 not_TE_peak all_peaks 0.4915254237
4369 Alu 305 TE_peak all_peaks 1.0000000000
4370 MIR 86 TE_peak all_peaks 1.0000000000
4371 Alu 256 TE_peak all_peaks 0.8448844884
4372 MIR 31 not_TE_peak all_peaks 0.1308016878
4373 MIR 58 TE_peak all_peaks 1.0000000000
4374 MIR 108 TE_peak all_peaks 1.0000000000
4375 hAT-Charlie 56 not_TE_peak all_peaks 0.1555555556
4376 <NA> NA not_TE_peak all_peaks NA
4377 MIR 148 TE_peak all_peaks 1.0000000000
4378 <NA> NA not_TE_peak all_peaks NA
4379 <NA> NA not_TE_peak all_peaks NA
4380 MIR 147 TE_peak all_peaks 1.0000000000
4381 Simple_repeat 17 TE_peak all_peaks 1.0000000000
4382 Alu 167 TE_peak all_peaks 0.5566666667
4383 L2 157 TE_peak all_peaks 1.0000000000
4384 MIR 246 TE_peak all_peaks 1.0000000000
4385 MIR 84 TE_peak all_peaks 1.0000000000
4386 MIR 119 TE_peak all_peaks 1.0000000000
4387 MIR 167 TE_peak all_peaks 1.0000000000
4388 MIR 20 not_TE_peak all_peaks 0.1379310345
4389 CR1 100 TE_peak all_peaks 0.6024096386
4390 <NA> NA not_TE_peak all_peaks NA
4391 hAT-Ac 52 TE_peak all_peaks 1.0000000000
4392 L2 347 not_TE_peak all_peaks 0.4676549865
4393 MIR 44 not_TE_peak all_peaks 0.3283582090
4394 L2 84 TE_peak all_peaks 1.0000000000
4395 L2 69 TE_peak all_peaks 1.0000000000
4396 MIR 180 TE_peak all_peaks 0.7692307692
4397 L2 92 not_TE_peak all_peaks 0.2738095238
4398 Low_complexity 44 TE_peak all_peaks 1.0000000000
4399 Simple_repeat 66 TE_peak all_peaks 1.0000000000
4400 Low_complexity 37 TE_peak all_peaks 1.0000000000
4401 MIR 178 TE_peak all_peaks 0.8054298643
4402 Low_complexity 30 TE_peak all_peaks 1.0000000000
4403 Simple_repeat 27 TE_peak all_peaks 1.0000000000
4404 Simple_repeat 72 TE_peak all_peaks 1.0000000000
4405 MIR 127 TE_peak all_peaks 1.0000000000
4406 Simple_repeat 35 TE_peak all_peaks 1.0000000000
4407 <NA> NA not_TE_peak all_peaks NA
4408 L2 246 TE_peak all_peaks 0.7321428571
4409 L2 150 TE_peak all_peaks 1.0000000000
4410 Low_complexity 46 TE_peak all_peaks 1.0000000000
4411 Simple_repeat 26 TE_peak all_peaks 1.0000000000
4412 MIR 82 TE_peak all_peaks 1.0000000000
4413 MIR 159 TE_peak all_peaks 1.0000000000
4414 MIR 194 TE_peak all_peaks 1.0000000000
4415 MIR 163 TE_peak all_peaks 1.0000000000
4416 MIR 33 not_TE_peak all_peaks 0.4125000000
4417 MIR 64 TE_peak all_peaks 0.7710843373
4418 <NA> NA not_TE_peak all_peaks NA
4419 MIR 91 TE_peak all_peaks 1.0000000000
4420 ERVL 85 TE_peak all_peaks 0.6439393939
4421 ERVL 233 TE_peak all_peaks 0.8726591760
4422 <NA> NA not_TE_peak all_peaks NA
4423 MIR 128 TE_peak all_peaks 1.0000000000
4424 MIR 227 TE_peak all_peaks 1.0000000000
4425 MIR 91 TE_peak all_peaks 0.8921568627
4426 L2 7 not_TE_peak all_peaks 0.0654205607
4427 MIR 19 not_TE_peak all_peaks 0.1900000000
4428 Alu 146 not_TE_peak all_peaks 0.4506172840
4429 ERV1 237 not_TE_peak all_peaks 0.3910891089
4430 MIR 19 not_TE_peak all_peaks 0.1532258065
4431 MIR 99 TE_peak all_peaks 1.0000000000
4432 Low_complexity 60 TE_peak all_peaks 1.0000000000
4433 L1 348 TE_peak all_peaks 0.8900255754
4434 Alu 35 not_TE_peak all_peaks 0.1776649746
4435 <NA> NA not_TE_peak all_peaks NA
4436 Simple_repeat 41 TE_peak all_peaks 1.0000000000
4437 Simple_repeat 24 TE_peak all_peaks 1.0000000000
4438 Simple_repeat 20 TE_peak all_peaks 1.0000000000
4439 Simple_repeat 204 TE_peak all_peaks 1.0000000000
4440 Simple_repeat 30 TE_peak all_peaks 1.0000000000
4441 <NA> NA not_TE_peak all_peaks NA
4442 MIR 39 not_TE_peak all_peaks 0.2484076433
4443 TcMar-Tigger 19 not_TE_peak all_peaks 0.2000000000
4444 Simple_repeat 41 TE_peak all_peaks 1.0000000000
4445 MIR 149 TE_peak all_peaks 0.6803652968
4446 Alu 58 not_TE_peak all_peaks 0.1858974359
4447 Alu 172 TE_peak all_peaks 0.5676567657
4448 Alu 31 not_TE_peak all_peaks 0.1026490066
4449 Simple_repeat 34 TE_peak all_peaks 1.0000000000
4450 ERVL 400 TE_peak all_peaks 1.0000000000
4451 ERVL 169 TE_peak all_peaks 0.7191489362
4452 ERVL 142 TE_peak all_peaks 1.0000000000
4453 Alu 52 not_TE_peak all_peaks 0.4601769912
4454 ERVL-MaLR 193 TE_peak all_peaks 0.6069182390
4455 L2 139 TE_peak all_peaks 0.7473118280
4456 L2 87 TE_peak all_peaks 0.9354838710
4457 <NA> NA not_TE_peak all_peaks NA
4458 hAT-Charlie 55 not_TE_peak all_peaks 0.3642384106
4459 <NA> NA not_TE_peak all_peaks NA
4460 <NA> NA not_TE_peak all_peaks NA
4461 <NA> NA not_TE_peak all_peaks NA
4462 Alu 269 TE_peak all_peaks 0.9853479853
4463 L2 109 TE_peak all_peaks 1.0000000000
4464 <NA> NA not_TE_peak all_peaks NA
4465 Alu 41 not_TE_peak all_peaks 0.1371237458
4466 MIR 82 TE_peak all_peaks 1.0000000000
4467 <NA> NA not_TE_peak all_peaks NA
4468 Alu 98 TE_peak all_peaks 0.5632183908
4469 MIR 91 TE_peak all_peaks 0.7647058824
4470 L2 158 TE_peak all_peaks 1.0000000000
4471 Alu 58 not_TE_peak all_peaks 0.1883116883
4472 Alu 82 TE_peak all_peaks 0.6507936508
4473 TcMar-Tigger 77 TE_peak all_peaks 1.0000000000
4474 Alu 15 not_TE_peak all_peaks 0.0524475524
4475 Alu 45 not_TE_peak all_peaks 0.1672862454
4476 Alu 303 TE_peak all_peaks 1.0000000000
4477 L2 251 TE_peak all_peaks 0.8070739550
4478 L1 36 TE_peak all_peaks 0.9000000000
4479 Alu 307 TE_peak all_peaks 1.0000000000
4480 L1 57 TE_peak all_peaks 1.0000000000
4481 Alu 80 not_TE_peak all_peaks 0.4040404040
4482 L2 27 TE_peak all_peaks 0.6136363636
4483 Alu 109 not_TE_peak all_peaks 0.4504132231
4484 Alu 123 TE_peak all_peaks 0.7409638554
4485 L1 647 TE_peak all_peaks 1.0000000000
4486 L1 40 TE_peak all_peaks 0.8510638298
4487 MIR 40 not_TE_peak all_peaks 0.2469135802
4488 Simple_repeat 73 TE_peak all_peaks 1.0000000000
4489 MIR 86 TE_peak all_peaks 1.0000000000
4490 Simple_repeat 40 TE_peak all_peaks 1.0000000000
4491 Simple_repeat 37 TE_peak all_peaks 1.0000000000
4492 <NA> NA not_TE_peak all_peaks NA
4493 <NA> NA not_TE_peak all_peaks NA
4494 <NA> NA not_TE_peak all_peaks NA
4495 Alu 157 TE_peak all_peaks 0.6709401709
4496 L2 43 TE_peak all_peaks 0.6825396825
4497 TcMar-Tigger 287 TE_peak all_peaks 1.0000000000
4498 TcMar-Tigger 149 TE_peak all_peaks 1.0000000000
4499 Alu 57 not_TE_peak all_peaks 0.1925675676
4500 <NA> NA not_TE_peak all_peaks NA
4501 hAT-Charlie 99 TE_peak all_peaks 1.0000000000
4502 Simple_repeat 38 TE_peak all_peaks 1.0000000000
4503 Alu 56 not_TE_peak all_peaks 0.1978798587
4504 Alu 77 TE_peak all_peaks 0.6875000000
4505 Simple_repeat 546 TE_peak all_peaks 0.8076923077
4506 <NA> NA not_TE_peak all_peaks NA
4507 MIR 47 not_TE_peak all_peaks 0.3455882353
4508 Simple_repeat 28 TE_peak all_peaks 1.0000000000
4509 L2 38 TE_peak all_peaks 0.5135135135
4510 Alu 135 TE_peak all_peaks 1.0000000000
4511 Alu 55 not_TE_peak all_peaks 0.1827242525
4512 Alu 54 not_TE_peak all_peaks 0.1836734694
4513 MIR 175 TE_peak all_peaks 1.0000000000
4514 MIR 40 not_TE_peak all_peaks 0.2614379085
4515 Simple_repeat 29 TE_peak all_peaks 1.0000000000
4516 Simple_repeat 84 TE_peak all_peaks 1.0000000000
4517 L2 49 TE_peak all_peaks 1.0000000000
4518 L2 111 TE_peak all_peaks 0.5842105263
4519 <NA> NA not_TE_peak all_peaks NA
4520 L2 288 TE_peak all_peaks 0.6385809313
4521 Low_complexity 3 not_TE_peak all_peaks 0.0588235294
4522 Low_complexity 44 TE_peak all_peaks 1.0000000000
4523 <NA> NA not_TE_peak all_peaks NA
4524 L2 183 not_TE_peak all_peaks 0.3780991736
4525 MIR 53 TE_peak all_peaks 0.5300000000
4526 hAT-Tip100 46 TE_peak all_peaks 1.0000000000
4527 Alu 49 not_TE_peak all_peaks 0.2737430168
4528 ERV1 516 not_TE_peak all_peaks 0.2763792180
4529 ERV1 211 not_TE_peak all_peaks 0.2747395833
4530 ERVK 860 TE_peak all_peaks 0.8617234469
4531 ERVL-MaLR 167 TE_peak all_peaks 1.0000000000
4532 L2 95 TE_peak all_peaks 1.0000000000
4533 Simple_repeat 28 not_TE_peak all_peaks 0.4057971014
4534 <NA> NA not_TE_peak all_peaks NA
4535 hAT-Charlie 239 TE_peak all_peaks 1.0000000000
4536 Alu 77 not_TE_peak all_peaks 0.2500000000
4537 Alu 94 not_TE_peak all_peaks 0.3143812709
4538 L2 224 TE_peak all_peaks 1.0000000000
4539 Alu 100 not_TE_peak all_peaks 0.3424657534
4540 MIR 76 TE_peak all_peaks 1.0000000000
4541 Simple_repeat 25 TE_peak all_peaks 1.0000000000
4542 Alu 189 TE_peak all_peaks 0.6279069767
4543 L1 212 TE_peak all_peaks 0.9636363636
4544 Simple_repeat 36 TE_peak all_peaks 1.0000000000
4545 Simple_repeat 19 TE_peak all_peaks 1.0000000000
4546 Low_complexity 26 TE_peak all_peaks 1.0000000000
4547 Simple_repeat 34 TE_peak all_peaks 1.0000000000
4548 L1 307 TE_peak all_peaks 1.0000000000
4549 Alu 53 not_TE_peak all_peaks 0.3581081081
4550 ERVL 187 TE_peak all_peaks 1.0000000000
4551 Alu 304 TE_peak all_peaks 1.0000000000
4552 Alu 58 not_TE_peak all_peaks 0.2086330935
4553 Alu 72 not_TE_peak all_peaks 0.2352941176
4554 hAT-Charlie 89 TE_peak all_peaks 1.0000000000
4555 ERVL-MaLR 295 TE_peak all_peaks 0.9394904459
4556 <NA> NA not_TE_peak all_peaks NA
4557 L1 94 TE_peak all_peaks 0.5497076023
4558 Alu 301 TE_peak all_peaks 1.0000000000
4559 L1 86 not_TE_peak all_peaks 0.3093525180
4560 ERVK 571 TE_peak all_peaks 0.5910973085
4561 <NA> NA not_TE_peak all_peaks NA
4562 <NA> NA not_TE_peak all_peaks NA
4563 Alu 24 not_TE_peak all_peaks 0.0813559322
4564 L2 219 TE_peak all_peaks 1.0000000000
4565 MIR 126 TE_peak all_peaks 1.0000000000
4566 MIR 83 TE_peak all_peaks 0.7904761905
4567 MIR 97 TE_peak all_peaks 0.7760000000
4568 <NA> NA not_TE_peak all_peaks NA
4569 MIR 111 TE_peak all_peaks 1.0000000000
4570 Alu 89 not_TE_peak all_peaks 0.3973214286
4571 hAT-Tip100 101 TE_peak all_peaks 1.0000000000
4572 MIR 71 TE_peak all_peaks 0.6228070175
4573 <NA> NA not_TE_peak all_peaks NA
4574 MIR 93 TE_peak all_peaks 0.6549295775
4575 Simple_repeat 77 TE_peak all_peaks 1.0000000000
4576 Simple_repeat 66 TE_peak all_peaks 1.0000000000
4577 MIR 142 TE_peak all_peaks 0.8114285714
4578 MIR 5 not_TE_peak all_peaks 0.0326797386
4579 MIR 181 TE_peak all_peaks 0.8190045249
4580 Simple_repeat 23 TE_peak all_peaks 0.6571428571
4581 Simple_repeat 32 TE_peak all_peaks 1.0000000000
4582 hAT-Charlie 63 TE_peak all_peaks 0.5575221239
4583 Simple_repeat 36 TE_peak all_peaks 1.0000000000
4584 <NA> NA not_TE_peak all_peaks NA
4585 L1 52 not_TE_peak all_peaks 0.1090146751
4586 TcMar-Tigger 35 not_TE_peak all_peaks 0.0784753363
4587 ERV1 53 not_TE_peak all_peaks 0.4649122807
4588 L1 149 TE_peak all_peaks 1.0000000000
4589 ERV1 393 TE_peak all_peaks 1.0000000000
4590 L2 118 TE_peak all_peaks 0.8939393939
4591 L2 195 TE_peak all_peaks 0.9653465347
4592 Alu 248 TE_peak all_peaks 0.7515151515
4593 Simple_repeat 42 TE_peak all_peaks 1.0000000000
4594 Simple_repeat 82 TE_peak all_peaks 1.0000000000
4595 Simple_repeat 44 TE_peak all_peaks 1.0000000000
4596 MIR 211 TE_peak all_peaks 0.9419642857
4597 <NA> NA not_TE_peak all_peaks NA
4598 MIR 120 TE_peak all_peaks 0.7843137255
4599 Simple_repeat 50 TE_peak all_peaks 1.0000000000
4600 <NA> NA not_TE_peak all_peaks NA
4601 Simple_repeat 29 TE_peak all_peaks 1.0000000000
4602 Alu 234 TE_peak all_peaks 1.0000000000
4603 MIR 133 TE_peak all_peaks 1.0000000000
4604 MIR 37 not_TE_peak all_peaks 0.2868217054
4605 hAT-Charlie 187 TE_peak all_peaks 1.0000000000
4606 L2 148 TE_peak all_peaks 1.0000000000
4607 hAT-Charlie 58 TE_peak all_peaks 0.6170212766
4608 ERV1 756 not_TE_peak all_peaks 0.3045930701
4609 Alu 84 not_TE_peak all_peaks 0.2745098039
4610 MIR 130 TE_peak all_peaks 1.0000000000
4611 Alu 23 not_TE_peak all_peaks 0.0804195804
4612 MIR 49 TE_peak all_peaks 0.5764705882
4613 Alu 87 not_TE_peak all_peaks 0.2890365449
4614 <NA> NA not_TE_peak all_peaks NA
4615 Simple_repeat 172 TE_peak all_peaks 1.0000000000
4616 Simple_repeat 79 TE_peak all_peaks 1.0000000000
4617 Simple_repeat 35 TE_peak all_peaks 1.0000000000
4618 Low_complexity 27 TE_peak all_peaks 1.0000000000
4619 Simple_repeat 34 TE_peak all_peaks 1.0000000000
4620 SVA 280 not_TE_peak all_peaks 0.1183431953
4621 SVA 679 not_TE_peak all_peaks 0.2869822485
4622 Simple_repeat 4 not_TE_peak all_peaks 0.1052631579
4623 CR1 275 TE_peak all_peaks 0.8675078864
4624 MIR 133 TE_peak all_peaks 1.0000000000
4625 MIR 157 TE_peak all_peaks 1.0000000000
4626 MIR 76 TE_peak all_peaks 1.0000000000
4627 L2 91 TE_peak all_peaks 0.7711864407
4628 MIR 80 not_TE_peak all_peaks 0.4494382022
4629 hAT-Charlie 168 TE_peak all_peaks 0.5793103448
4630 <NA> NA not_TE_peak all_peaks NA
4631 RTE-BovB 52 not_TE_peak all_peaks 0.2780748663
4632 MIR 222 TE_peak all_peaks 1.0000000000
4633 MIR 142 TE_peak all_peaks 0.6283185841
4634 <NA> NA not_TE_peak all_peaks NA
4635 Alu 280 TE_peak all_peaks 1.0000000000
4636 MIR 212 TE_peak all_peaks 1.0000000000
4637 L1 19 not_TE_peak all_peaks 0.1681415929
4638 Simple_repeat 39 TE_peak all_peaks 1.0000000000
4639 ERVL-MaLR 113 TE_peak all_peaks 0.6890243902
4640 L2 79 TE_peak all_peaks 1.0000000000
4641 MIR 95 TE_peak all_peaks 1.0000000000
4642 Alu 134 TE_peak all_peaks 0.7976190476
4643 ERV1 215 TE_peak all_peaks 0.9907834101
4644 ERV1 141 TE_peak all_peaks 1.0000000000
4645 ERVL-MaLR 227 TE_peak all_peaks 0.6412429379
4646 ERVL-MaLR 25 not_TE_peak all_peaks 0.0586854460
4647 <NA> NA not_TE_peak all_peaks NA
4648 MIR 74 TE_peak all_peaks 0.5967741935
4649 L2 50 not_TE_peak all_peaks 0.2092050209
4650 MIR 107 TE_peak all_peaks 1.0000000000
4651 Simple_repeat 25 TE_peak all_peaks 1.0000000000
4652 hAT 2 not_TE_peak all_peaks 0.0105263158
4653 MIR 72 TE_peak all_peaks 1.0000000000
4654 <NA> NA not_TE_peak all_peaks NA
4655 MIR 118 TE_peak all_peaks 1.0000000000
4656 hAT-Charlie 188 TE_peak all_peaks 1.0000000000
4657 Low_complexity 88 TE_peak all_peaks 1.0000000000
4658 ERVL 724 TE_peak all_peaks 0.5796637310
4659 Simple_repeat 54 TE_peak all_peaks 1.0000000000
4660 MIR 76 TE_peak all_peaks 0.5000000000
4661 MIR 151 TE_peak all_peaks 0.7947368421
4662 MIR 158 TE_peak all_peaks 0.7860696517
4663 L2 200 not_TE_peak all_peaks 0.1841620626
4664 Alu 46 not_TE_peak all_peaks 0.1538461538
4665 MIR 5 not_TE_peak all_peaks 0.0301204819
4666 Gypsy? 1 not_TE_peak all_peaks 0.0071428571
4667 Simple_repeat 29 TE_peak all_peaks 1.0000000000
4668 Simple_repeat 34 TE_peak all_peaks 1.0000000000
4669 Simple_repeat 99 TE_peak all_peaks 1.0000000000
4670 Simple_repeat 42 TE_peak all_peaks 1.0000000000
4671 L2 65 not_TE_peak all_peaks 0.1679586563
4672 MIR 94 TE_peak all_peaks 1.0000000000
4673 <NA> NA not_TE_peak all_peaks NA
4674 MIR 3 not_TE_peak all_peaks 0.0275229358
4675 Simple_repeat 133 TE_peak all_peaks 1.0000000000
4676 ERVL-MaLR 294 TE_peak all_peaks 0.6086956522
4677 MIR 85 TE_peak all_peaks 1.0000000000
4678 <NA> NA not_TE_peak all_peaks NA
4679 Alu 32 not_TE_peak all_peaks 0.1032258065
4680 <NA> NA not_TE_peak all_peaks NA
4681 <NA> NA not_TE_peak all_peaks NA
4682 <NA> NA not_TE_peak all_peaks NA
4683 <NA> NA not_TE_peak all_peaks NA
4684 MIR 118 TE_peak all_peaks 0.8872180451
4685 Simple_repeat 110 TE_peak all_peaks 1.0000000000
4686 MIR 165 TE_peak all_peaks 1.0000000000
4687 MIR 40 TE_peak all_peaks 1.0000000000
4688 Alu 73 not_TE_peak all_peaks 0.2393442623
4689 MIR 208 TE_peak all_peaks 0.9454545455
4690 <NA> NA not_TE_peak all_peaks NA
4691 <NA> NA not_TE_peak all_peaks NA
4692 Simple_repeat 31 TE_peak all_peaks 1.0000000000
4693 hAT-Charlie 144 TE_peak all_peaks 1.0000000000
4694 L2 170 TE_peak all_peaks 0.6614785992
4695 MIR 76 not_TE_peak all_peaks 0.3653846154
4696 L1 121 not_TE_peak all_peaks 0.2688888889
4697 MIR 112 not_TE_peak all_peaks 0.4609053498
4698 Simple_repeat 65 TE_peak all_peaks 1.0000000000
4699 Simple_repeat 46 TE_peak all_peaks 1.0000000000
4700 Simple_repeat 39 TE_peak all_peaks 1.0000000000
4701 L2 32 not_TE_peak all_peaks 0.2935779817
4702 L2 122 TE_peak all_peaks 1.0000000000
4703 L2 166 TE_peak all_peaks 0.8383838384
4704 MIR 12 not_TE_peak all_peaks 0.0594059406
4705 Simple_repeat 32 TE_peak all_peaks 1.0000000000
4706 ERVL-MaLR 240 TE_peak all_peaks 0.5128205128
4707 Simple_repeat 61 TE_peak all_peaks 1.0000000000
4708 L2 103 not_TE_peak all_peaks 0.3901515152
4709 MIR 111 TE_peak all_peaks 1.0000000000
4710 Simple_repeat 40 TE_peak all_peaks 1.0000000000
4711 MIR 126 TE_peak all_peaks 0.8076923077
4712 MIR 46 not_TE_peak all_peaks 0.1825396825
4713 ERVL-MaLR 22 not_TE_peak all_peaks 0.0586666667
4714 L2 306 TE_peak all_peaks 0.8315217391
4715 MIR 40 not_TE_peak all_peaks 0.2209944751
4716 Simple_repeat 30 TE_peak all_peaks 1.0000000000
4717 Alu 74 not_TE_peak all_peaks 0.3592233010
4718 <NA> NA not_TE_peak all_peaks NA
4719 <NA> NA not_TE_peak all_peaks NA
4720 L2 281 TE_peak all_peaks 0.9064516129
4721 MIR 4 not_TE_peak all_peaks 0.0207253886
4722 L2 51 TE_peak all_peaks 0.6144578313
4723 L2 76 TE_peak all_peaks 1.0000000000
4724 MIR 54 not_TE_peak all_peaks 0.4500000000
4725 L2 210 TE_peak all_peaks 1.0000000000
4726 L2 119 TE_peak all_peaks 1.0000000000
4727 Simple_repeat 30 TE_peak all_peaks 1.0000000000
4728 <NA> NA not_TE_peak all_peaks NA
4729 MIR 34 not_TE_peak all_peaks 0.1292775665
4730 L2 313 TE_peak all_peaks 0.6955555556
4731 hAT-Charlie 99 TE_peak all_peaks 0.8461538462
4732 hAT-Charlie 121 TE_peak all_peaks 1.0000000000
4733 L2 30 not_TE_peak all_peaks 0.1153846154
4734 L2 584 TE_peak all_peaks 1.0000000000
4735 L1 309 TE_peak all_peaks 0.9307228916
4736 hAT-Charlie 132 TE_peak all_peaks 1.0000000000
4737 MIR 49 not_TE_peak all_peaks 0.4224137931
4738 MIR 59 TE_peak all_peaks 0.5412844037
4739 hAT-Charlie 55 TE_peak all_peaks 0.5670103093
4740 Low_complexity 38 TE_peak all_peaks 1.0000000000
4741 L2 226 TE_peak all_peaks 1.0000000000
4742 MIR 161 TE_peak all_peaks 1.0000000000
4743 L2 373 TE_peak all_peaks 0.6442141623
4744 L2 101 TE_peak all_peaks 0.5287958115
4745 Simple_repeat 39 TE_peak all_peaks 1.0000000000
4746 Simple_repeat 36 TE_peak all_peaks 1.0000000000
4747 hAT-Charlie 191 TE_peak all_peaks 1.0000000000
4748 MIR 26 not_TE_peak all_peaks 0.2626262626
4749 <NA> NA not_TE_peak all_peaks NA
4750 <NA> NA not_TE_peak all_peaks NA
4751 L2 76 TE_peak all_peaks 1.0000000000
4752 MIR 137 TE_peak all_peaks 1.0000000000
4753 MIR 136 TE_peak all_peaks 0.8343558282
4754 L2 163 TE_peak all_peaks 0.8858695652
4755 Simple_repeat 26 TE_peak all_peaks 1.0000000000
4756 MIR 170 TE_peak all_peaks 1.0000000000
4757 Low_complexity 7 not_TE_peak all_peaks 0.1590909091
4758 L2 752 TE_peak all_peaks 0.7497507478
4759 MIR 74 not_TE_peak all_peaks 0.3378995434
4760 <NA> NA not_TE_peak all_peaks NA
4761 MIR 68 not_TE_peak all_peaks 0.4788732394
4762 <NA> NA not_TE_peak all_peaks NA
4763 MIR 146 TE_peak all_peaks 1.0000000000
4764 Simple_repeat 37 TE_peak all_peaks 1.0000000000
4765 Simple_repeat 36 TE_peak all_peaks 1.0000000000
4766 Simple_repeat 45 TE_peak all_peaks 1.0000000000
4767 Simple_repeat 55 TE_peak all_peaks 1.0000000000
4768 Simple_repeat 227 TE_peak all_peaks 0.9497907950
4769 Simple_repeat 39 TE_peak all_peaks 1.0000000000
4770 Simple_repeat 79 TE_peak all_peaks 0.9080459770
4771 hAT-Charlie 2 not_TE_peak all_peaks 0.0113636364
4772 hAT-Charlie 197 TE_peak all_peaks 1.0000000000
4773 ERVL-MaLR 307 TE_peak all_peaks 0.6504237288
4774 Simple_repeat 48 TE_peak all_peaks 1.0000000000
4775 L2 60 not_TE_peak all_peaks 0.1857585139
4776 <NA> NA not_TE_peak all_peaks NA
4777 <NA> NA not_TE_peak all_peaks NA
4778 MIR 229 TE_peak all_peaks 1.0000000000
4779 MIR 109 TE_peak all_peaks 0.7676056338
4780 ERVL-MaLR 214 TE_peak all_peaks 0.8842975207
4781 L1 430 not_TE_peak all_peaks 0.1251455180
4782 <NA> NA not_TE_peak all_peaks NA
4783 Gypsy? 228 TE_peak all_peaks 1.0000000000
4784 Gypsy 179 not_TE_peak all_peaks 0.4231678487
4785 L2 103 TE_peak all_peaks 1.0000000000
4786 ERV1 80 not_TE_peak all_peaks 0.1864801865
4787 ERVL-MaLR 74 not_TE_peak all_peaks 0.2067039106
4788 ERV1 136 TE_peak all_peaks 1.0000000000
4789 Alu 304 TE_peak all_peaks 1.0000000000
4790 ERV1 284 TE_peak all_peaks 1.0000000000
4791 ERVL 379 TE_peak all_peaks 0.6035031847
4792 Low_complexity 39 TE_peak all_peaks 1.0000000000
4793 L2 126 TE_peak all_peaks 1.0000000000
4794 Alu 45 not_TE_peak all_peaks 0.1535836177
4795 <NA> NA not_TE_peak all_peaks NA
4796 hAT-Charlie 5 not_TE_peak all_peaks 0.0390625000
4797 <NA> NA not_TE_peak all_peaks NA
4798 L2 51 not_TE_peak all_peaks 0.4857142857
4799 ERVL-MaLR 372 TE_peak all_peaks 0.8752941176
4800 ERVL 145 not_TE_peak all_peaks 0.3452380952
4801 L2 288 TE_peak all_peaks 0.9142857143
4802 L2 118 TE_peak all_peaks 1.0000000000
4803 Simple_repeat 34 TE_peak all_peaks 1.0000000000
4804 ERVL 10 not_TE_peak all_peaks 0.1694915254
4805 L2 196 not_TE_peak all_peaks 0.2297772567
4806 <NA> NA not_TE_peak all_peaks NA
4807 <NA> NA not_TE_peak all_peaks NA
4808 MIR 114 TE_peak all_peaks 1.0000000000
4809 <NA> NA not_TE_peak all_peaks NA
4810 Simple_repeat 131 TE_peak all_peaks 1.0000000000
4811 <NA> NA not_TE_peak all_peaks NA
4812 <NA> NA not_TE_peak all_peaks NA
4813 ERVL-MaLR 214 TE_peak all_peaks 0.5071090047
4814 MIR 52 not_TE_peak all_peaks 0.2023346304
4815 Simple_repeat 1 not_TE_peak all_peaks 0.0113636364
4816 CR1 274 TE_peak all_peaks 1.0000000000
4817 <NA> NA not_TE_peak all_peaks NA
4818 hAT-Charlie 72 TE_peak all_peaks 0.7659574468
4819 L2 90 TE_peak all_peaks 1.0000000000
4820 MIR 17 not_TE_peak all_peaks 0.0977011494
4821 Low_complexity 52 TE_peak all_peaks 1.0000000000
4822 Low_complexity 45 TE_peak all_peaks 1.0000000000
4823 <NA> NA not_TE_peak all_peaks NA
4824 Simple_repeat 377 TE_peak all_peaks 1.0000000000
4825 Simple_repeat 51 TE_peak all_peaks 1.0000000000
4826 <NA> NA not_TE_peak all_peaks NA
4827 <NA> NA not_TE_peak all_peaks NA
4828 L2 62 TE_peak all_peaks 0.7045454545
4829 MIR 73 TE_peak all_peaks 1.0000000000
4830 Simple_repeat 78 TE_peak all_peaks 1.0000000000
4831 Simple_repeat 41 TE_peak all_peaks 1.0000000000
4832 L2 93 TE_peak all_peaks 1.0000000000
4833 Simple_repeat 43 TE_peak all_peaks 1.0000000000
4834 MIR 140 TE_peak all_peaks 0.8536585366
4835 L2 9 not_TE_peak all_peaks 0.1551724138
4836 Alu 122 TE_peak all_peaks 0.6321243523
4837 <NA> NA not_TE_peak all_peaks NA
4838 MIR 80 TE_peak all_peaks 0.5000000000
4839 Alu 100 not_TE_peak all_peaks 0.3571428571
4840 hAT-Tip100 30 not_TE_peak all_peaks 0.1287553648
4841 ERV1 438 not_TE_peak all_peaks 0.3974591652
4842 Alu 249 TE_peak all_peaks 0.8217821782
4843 Alu 295 TE_peak all_peaks 1.0000000000
4844 Alu 6 not_TE_peak all_peaks 0.0280373832
4845 Simple_repeat 39 TE_peak all_peaks 1.0000000000
4846 Simple_repeat 130 TE_peak all_peaks 1.0000000000
4847 Simple_repeat 69 TE_peak all_peaks 1.0000000000
4848 Simple_repeat 43 TE_peak all_peaks 1.0000000000
4849 <NA> NA not_TE_peak all_peaks NA
4850 <NA> NA not_TE_peak all_peaks NA
4851 ERVL-MaLR 416 not_TE_peak all_peaks 0.3047619048
4852 Alu 164 TE_peak all_peaks 0.5857142857
4853 Alu 82 TE_peak all_peaks 1.0000000000
4854 Gypsy 91 not_TE_peak all_peaks 0.4396135266
4855 L2 148 TE_peak all_peaks 1.0000000000
4856 Alu 55 not_TE_peak all_peaks 0.2806122449
4857 ERVL 396 TE_peak all_peaks 1.0000000000
4858 L1 107 TE_peak all_peaks 0.6149425287
4859 Alu 255 TE_peak all_peaks 0.8557046980
4860 L1 128 not_TE_peak all_peaks 0.4942084942
4861 ERVL 190 TE_peak all_peaks 1.0000000000
4862 ERVL 223 not_TE_peak all_peaks 0.3626016260
4863 L2 342 TE_peak all_peaks 0.8321167883
4864 <NA> NA not_TE_peak all_peaks NA
4865 MIR 115 TE_peak all_peaks 1.0000000000
4866 Low_complexity 50 TE_peak all_peaks 0.5882352941
4867 <NA> NA not_TE_peak all_peaks NA
4868 Alu 162 TE_peak all_peaks 1.0000000000
4869 L2 21 not_TE_peak all_peaks 0.1009615385
4870 MIR 23 not_TE_peak all_peaks 0.1321839080
4871 Alu 303 TE_peak all_peaks 0.9837662338
4872 L1 153 not_TE_peak all_peaks 0.4250000000
4873 Simple_repeat 24 TE_peak all_peaks 1.0000000000
4874 Simple_repeat 37 TE_peak all_peaks 1.0000000000
4875 MIR 153 TE_peak all_peaks 1.0000000000
4876 L2 174 TE_peak all_peaks 0.8169014085
4877 L2 111 TE_peak all_peaks 0.9173553719
4878 MIR 69 not_TE_peak all_peaks 0.3333333333
4879 Simple_repeat 17 not_TE_peak all_peaks 0.3269230769
4880 Low_complexity 6 not_TE_peak all_peaks 0.1200000000
4881 <NA> NA not_TE_peak all_peaks NA
4882 Simple_repeat 48 TE_peak all_peaks 1.0000000000
4883 <NA> NA not_TE_peak all_peaks NA
4884 Alu 286 TE_peak all_peaks 1.0000000000
4885 Alu 237 TE_peak all_peaks 0.8061224490
4886 ERVL 187 TE_peak all_peaks 1.0000000000
4887 ERVL 197 TE_peak all_peaks 1.0000000000
4888 ERVL 35 not_TE_peak all_peaks 0.0964187328
4889 Simple_repeat 46 TE_peak all_peaks 1.0000000000
4890 Alu 48 not_TE_peak all_peaks 0.1578947368
4891 <NA> NA not_TE_peak all_peaks NA
4892 <NA> NA not_TE_peak all_peaks NA
4893 L2 63 not_TE_peak all_peaks 0.2413793103
4894 ERVL 308 TE_peak all_peaks 0.8346883469
4895 hAT-Tip100 2 not_TE_peak all_peaks 0.0055865922
4896 Alu 69 not_TE_peak all_peaks 0.2269736842
4897 Simple_repeat 29 TE_peak all_peaks 1.0000000000
4898 Simple_repeat 113 TE_peak all_peaks 1.0000000000
4899 Simple_repeat 26 TE_peak all_peaks 1.0000000000
4900 Simple_repeat 73 TE_peak all_peaks 1.0000000000
4901 Simple_repeat 25 TE_peak all_peaks 1.0000000000
4902 ERVL-MaLR 167 TE_peak all_peaks 0.6139705882
4903 Alu 97 not_TE_peak all_peaks 0.4663461538
4904 L2 108 TE_peak all_peaks 0.5000000000
4905 Simple_repeat 49 TE_peak all_peaks 1.0000000000
4906 Simple_repeat 44 TE_peak all_peaks 1.0000000000
4907 Simple_repeat 4 not_TE_peak all_peaks 0.1176470588
4908 Simple_repeat 10 not_TE_peak all_peaks 0.2000000000
4909 L2 129 TE_peak all_peaks 1.0000000000
4910 Simple_repeat 58 TE_peak all_peaks 1.0000000000
4911 L2 11 not_TE_peak all_peaks 0.1222222222
4912 hAT-Charlie 180 TE_peak all_peaks 1.0000000000
4913 MIR 36 TE_peak all_peaks 1.0000000000
4914 MIR 184 TE_peak all_peaks 1.0000000000
4915 Alu 260 TE_peak all_peaks 0.8552631579
4916 Simple_repeat 27 TE_peak all_peaks 1.0000000000
4917 <NA> NA not_TE_peak all_peaks NA
4918 L2 78 TE_peak all_peaks 1.0000000000
4919 MIR 52 TE_peak all_peaks 1.0000000000
4920 <NA> NA not_TE_peak all_peaks NA
4921 ERV1 21 not_TE_peak all_peaks 0.2530120482
4922 MIR 14 not_TE_peak all_peaks 0.1044776119
4923 Simple_repeat 65 TE_peak all_peaks 1.0000000000
4924 TcMar-Tigger 47 TE_peak all_peaks 1.0000000000
4925 TcMar-Tigger 55 TE_peak all_peaks 1.0000000000
4926 TcMar-Tigger 72 TE_peak all_peaks 1.0000000000
4927 L2 271 TE_peak all_peaks 1.0000000000
4928 L2 14 not_TE_peak all_peaks 0.0633484163
4929 <NA> NA not_TE_peak all_peaks NA
4930 Simple_repeat 31 TE_peak all_peaks 1.0000000000
4931 MIR 24 not_TE_peak all_peaks 0.2330097087
4932 MIR 57 not_TE_peak all_peaks 0.3275862069
4933 L2 123 TE_peak all_peaks 1.0000000000
4934 Simple_repeat 292 not_TE_peak all_peaks 0.4027586207
4935 MIR 159 TE_peak all_peaks 0.7327188940
4936 <NA> NA not_TE_peak all_peaks NA
4937 MIR 80 not_TE_peak all_peaks 0.3463203463
4938 <NA> NA not_TE_peak all_peaks NA
4939 Low_complexity 58 TE_peak all_peaks 1.0000000000
4940 Simple_repeat 20 TE_peak all_peaks 1.0000000000
4941 Low_complexity 40 TE_peak all_peaks 1.0000000000
4942 Low_complexity 58 TE_peak all_peaks 1.0000000000
4943 Simple_repeat 48 TE_peak all_peaks 1.0000000000
4944 Simple_repeat 55 TE_peak all_peaks 1.0000000000
4945 MIR 18 not_TE_peak all_peaks 0.0942408377
4946 L2 237 TE_peak all_peaks 0.8200692042
4947 L2 418 TE_peak all_peaks 0.6920529801
4948 MIR 112 TE_peak all_peaks 1.0000000000
4949 MIR 38 not_TE_peak all_peaks 0.3392857143
4950 MIR 68 not_TE_peak all_peaks 0.3505154639
4951 <NA> NA not_TE_peak all_peaks NA
4952 Low_complexity 38 TE_peak all_peaks 1.0000000000
4953 Alu 20 not_TE_peak all_peaks 0.0675675676
4954 MIR 113 TE_peak all_peaks 1.0000000000
4955 hAT-Charlie 235 TE_peak all_peaks 1.0000000000
4956 TcMar-Tigger 327 TE_peak all_peaks 0.5647668394
4957 MIR 215 TE_peak all_peaks 1.0000000000
4958 <NA> NA not_TE_peak all_peaks NA
4959 ERVL 481 TE_peak all_peaks 0.8321799308
4960 Alu 137 not_TE_peak all_peaks 0.4612794613
4961 Alu 71 TE_peak all_peaks 0.5680000000
4962 Alu 200 TE_peak all_peaks 1.0000000000
4963 L2 97 TE_peak all_peaks 1.0000000000
4964 Alu 193 TE_peak all_peaks 0.6542372881
4965 Alu 117 not_TE_peak all_peaks 0.3774193548
4966 L2 204 TE_peak all_peaks 0.6315789474
4967 <NA> NA not_TE_peak all_peaks NA
4968 CR1 89 TE_peak all_peaks 1.0000000000
4969 L1 224 TE_peak all_peaks 0.5423728814
4970 Alu 75 not_TE_peak all_peaks 0.2525252525
4971 Alu 69 TE_peak all_peaks 1.0000000000
4972 L1 63 TE_peak all_peaks 1.0000000000
4973 Alu 249 TE_peak all_peaks 0.8675958188
4974 <NA> NA not_TE_peak all_peaks NA
4975 <NA> NA not_TE_peak all_peaks NA
4976 Alu 263 TE_peak all_peaks 0.9460431655
4977 Alu 84 TE_peak all_peaks 1.0000000000
4978 MIR 148 TE_peak all_peaks 1.0000000000
4979 L2 44 TE_peak all_peaks 0.7096774194
4980 Simple_repeat 48 TE_peak all_peaks 1.0000000000
4981 Simple_repeat 9 TE_peak all_peaks 1.0000000000
4982 Low_complexity 29 TE_peak all_peaks 1.0000000000
4983 Simple_repeat 38 TE_peak all_peaks 1.0000000000
4984 MIR 195 TE_peak all_peaks 1.0000000000
4985 <NA> NA not_TE_peak all_peaks NA
4986 MIR 162 TE_peak all_peaks 1.0000000000
4987 MIR 68 TE_peak all_peaks 0.5112781955
4988 <NA> NA not_TE_peak all_peaks NA
4989 MIR 122 TE_peak all_peaks 1.0000000000
4990 L2 66 TE_peak all_peaks 1.0000000000
4991 <NA> NA not_TE_peak all_peaks NA
4992 <NA> NA not_TE_peak all_peaks NA
4993 <NA> NA not_TE_peak all_peaks NA
4994 <NA> NA not_TE_peak all_peaks NA
4995 MIR 51 TE_peak all_peaks 1.0000000000
4996 Simple_repeat 42 TE_peak all_peaks 1.0000000000
4997 Simple_repeat 8 TE_peak all_peaks 1.0000000000
4998 MIR 138 TE_peak all_peaks 1.0000000000
4999 L2 89 not_TE_peak all_peaks 0.2816455696
5000 ERV1 1047 TE_peak all_peaks 0.8512195122
5001 ERVL-MaLR 21 not_TE_peak all_peaks 0.1750000000
5002 ERV1 298 TE_peak all_peaks 0.6563876652
5003 L2 192 TE_peak all_peaks 0.5765765766
5004 L2 415 TE_peak all_peaks 0.7656826568
5005 Low_complexity 32 TE_peak all_peaks 1.0000000000
5006 MIR 172 TE_peak all_peaks 0.8349514563
5007 Alu 95 not_TE_peak all_peaks 0.2978056426
5008 Simple_repeat 39 TE_peak all_peaks 1.0000000000
5009 MIR 140 TE_peak all_peaks 0.6422018349
5010 MIR 197 TE_peak all_peaks 0.7576923077
5011 MIR 201 TE_peak all_peaks 1.0000000000
5012 <NA> NA not_TE_peak all_peaks NA
5013 MIR 167 TE_peak all_peaks 1.0000000000
5014 MIR 159 TE_peak all_peaks 0.7260273973
5015 L2 123 not_TE_peak all_peaks 0.3178294574
5016 L2 170 not_TE_peak all_peaks 0.1689860835
5017 MIR 39 TE_peak all_peaks 1.0000000000
5018 <NA> NA not_TE_peak all_peaks NA
5019 <NA> NA not_TE_peak all_peaks NA
5020 <NA> NA not_TE_peak all_peaks NA
5021 Simple_repeat 665 TE_peak all_peaks 0.9693877551
5022 <NA> NA not_TE_peak all_peaks NA
5023 ERVL-MaLR 36 not_TE_peak all_peaks 0.0734693878
5024 <NA> NA not_TE_peak all_peaks NA
5025 Gypsy 184 not_TE_peak all_peaks 0.4986449864
5026 ERVL-MaLR 300 TE_peak all_peaks 0.7575757576
5027 Simple_repeat 45 not_TE_peak all_peaks 0.1654411765
5028 <NA> NA not_TE_peak all_peaks NA
5029 Alu 207 TE_peak all_peaks 0.6764705882
5030 MIR 192 TE_peak all_peaks 1.0000000000
5031 MIR 42 not_TE_peak all_peaks 0.1842105263
5032 <NA> NA not_TE_peak all_peaks NA
5033 L2 119 TE_peak all_peaks 1.0000000000
5034 <NA> NA not_TE_peak all_peaks NA
5035 <NA> NA not_TE_peak all_peaks NA
5036 <NA> NA not_TE_peak all_peaks NA
5037 Simple_repeat 37 TE_peak all_peaks 1.0000000000
5038 Simple_repeat 82 TE_peak all_peaks 1.0000000000
5039 Simple_repeat 35 TE_peak all_peaks 1.0000000000
5040 Simple_repeat 43 TE_peak all_peaks 1.0000000000
5041 <NA> NA not_TE_peak all_peaks NA
5042 <NA> NA not_TE_peak all_peaks NA
5043 L2 61 TE_peak all_peaks 1.0000000000
5044 L2 143 TE_peak all_peaks 1.0000000000
5045 <NA> NA not_TE_peak all_peaks NA
5046 <NA> NA not_TE_peak all_peaks NA
5047 ERVL? 225 TE_peak all_peaks 0.9453781513
5048 L2 229 TE_peak all_peaks 0.9160000000
5049 Low_complexity 110 TE_peak all_peaks 1.0000000000
5050 <NA> NA not_TE_peak all_peaks NA
5051 ERVL 200 not_TE_peak all_peaks 0.4926108374
5052 Simple_repeat 2 not_TE_peak all_peaks 0.0434782609
5053 Simple_repeat 528 TE_peak all_peaks 1.0000000000
5054 Simple_repeat 38 TE_peak all_peaks 1.0000000000
5055 L1 74 not_TE_peak all_peaks 0.3109243697
5056 L2 83 TE_peak all_peaks 0.6194029851
5057 ERVL-MaLR 241 TE_peak all_peaks 0.5415730337
5058 <NA> NA not_TE_peak all_peaks NA
5059 Alu 68 not_TE_peak all_peaks 0.2251655629
5060 L2 173 TE_peak all_peaks 1.0000000000
5061 TcMar-Tigger 6 not_TE_peak all_peaks 0.0264317181
5062 hAT-Blackjack 190 TE_peak all_peaks 1.0000000000
5063 Simple_repeat 27 TE_peak all_peaks 1.0000000000
5064 Alu 29 not_TE_peak all_peaks 0.0979729730
5065 hAT-Charlie 33 not_TE_peak all_peaks 0.2750000000
5066 L2 14 not_TE_peak all_peaks 0.0486111111
5067 MIR 86 TE_peak all_peaks 0.8349514563
5068 L2 188 TE_peak all_peaks 0.8209606987
5069 Low_complexity 143 TE_peak all_peaks 1.0000000000
5070 Simple_repeat 42 TE_peak all_peaks 1.0000000000
5071 <NA> NA not_TE_peak all_peaks NA
5072 <NA> NA not_TE_peak all_peaks NA
5073 Alu 183 TE_peak all_peaks 0.6203389831
5074 L2 47 TE_peak all_peaks 1.0000000000
5075 hAT-Charlie 2 not_TE_peak all_peaks 0.0163934426
5076 Simple_repeat 39 TE_peak all_peaks 1.0000000000
5077 Simple_repeat 77 TE_peak all_peaks 1.0000000000
5078 Simple_repeat 30 TE_peak all_peaks 1.0000000000
5079 L2 335 TE_peak all_peaks 0.8170731707
5080 Alu 71 TE_peak all_peaks 0.5378787879
5081 Alu 9 not_TE_peak all_peaks 0.0303030303
5082 MIR 93 TE_peak all_peaks 0.6690647482
5083 <NA> NA not_TE_peak all_peaks NA
5084 Alu 45 not_TE_peak all_peaks 0.1461038961
5085 L2 82 TE_peak all_peaks 1.0000000000
5086 L2 9 not_TE_peak all_peaks 0.0937500000
5087 hAT-Charlie 41 not_TE_peak all_peaks 0.1202346041
5088 Gypsy? 146 TE_peak all_peaks 0.6985645933
5089 <NA> NA not_TE_peak all_peaks NA
5090 <NA> NA not_TE_peak all_peaks NA
5091 <NA> NA not_TE_peak all_peaks NA
5092 Alu 269 TE_peak all_peaks 1.0000000000
5093 <NA> NA not_TE_peak all_peaks NA
5094 Gypsy? 175 TE_peak all_peaks 0.5485893417
5095 MIR 73 not_TE_peak all_peaks 0.4171428571
5096 L1 152 not_TE_peak all_peaks 0.2002635046
5097 Simple_repeat 78 TE_peak all_peaks 1.0000000000
5098 CR1 205 TE_peak all_peaks 0.7118055556
5099 Simple_repeat 41 TE_peak all_peaks 1.0000000000
5100 <NA> NA not_TE_peak all_peaks NA
5101 <NA> NA not_TE_peak all_peaks NA
5102 L2 56 not_TE_peak all_peaks 0.4242424242
5103 L2 187 TE_peak all_peaks 1.0000000000
5104 MIR 97 TE_peak all_peaks 1.0000000000
5105 Low_complexity 44 TE_peak all_peaks 1.0000000000
5106 Simple_repeat 26 TE_peak all_peaks 1.0000000000
5107 <NA> NA not_TE_peak all_peaks NA
5108 <NA> NA not_TE_peak all_peaks NA
5109 Alu 53 not_TE_peak all_peaks 0.1827586207
5110 Simple_repeat 18 not_TE_peak all_peaks 0.2195121951
5111 Alu 196 TE_peak all_peaks 1.0000000000
5112 Alu 14 not_TE_peak all_peaks 0.0457516340
5113 TcMar-Tigger 338 TE_peak all_peaks 1.0000000000
5114 L1 16 not_TE_peak all_peaks 0.1126760563
5115 <NA> NA not_TE_peak all_peaks NA
5116 MIR 127 TE_peak all_peaks 1.0000000000
5117 MIR 78 TE_peak all_peaks 0.6190476190
5118 Simple_repeat 34 TE_peak all_peaks 1.0000000000
5119 <NA> NA not_TE_peak all_peaks NA
5120 hAT-Charlie 35 not_TE_peak all_peaks 0.1822916667
5121 hAT-Charlie 199 TE_peak all_peaks 1.0000000000
5122 Alu 144 not_TE_peak all_peaks 0.4690553746
5123 L2 69 TE_peak all_peaks 0.8414634146
5124 Alu 264 TE_peak all_peaks 1.0000000000
5125 MIR 25 not_TE_peak all_peaks 0.2000000000
5126 hAT-Ac 40 TE_peak all_peaks 1.0000000000
5127 Simple_repeat 27 not_TE_peak all_peaks 0.3802816901
5128 hAT-Tip100 88 TE_peak all_peaks 1.0000000000
5129 Simple_repeat 59 TE_peak all_peaks 1.0000000000
5130 Low_complexity 65 TE_peak all_peaks 1.0000000000
5131 Low_complexity 28 TE_peak all_peaks 1.0000000000
5132 Alu 54 not_TE_peak all_peaks 0.1806020067
5133 Alu 53 not_TE_peak all_peaks 0.1802721088
5134 hAT-Charlie 176 TE_peak all_peaks 0.8627450980
5135 Alu 31 not_TE_peak all_peaks 0.1201550388
5136 Simple_repeat 38 TE_peak all_peaks 1.0000000000
5137 Unknown 94 TE_peak all_peaks 1.0000000000
5138 Simple_repeat 45 TE_peak all_peaks 1.0000000000
5139 Simple_repeat 30 TE_peak all_peaks 1.0000000000
5140 Simple_repeat 42 TE_peak all_peaks 1.0000000000
5141 Simple_repeat 61 TE_peak all_peaks 1.0000000000
5142 Simple_repeat 104 TE_peak all_peaks 1.0000000000
5143 Simple_repeat 31 TE_peak all_peaks 1.0000000000
5144 L2 398 TE_peak all_peaks 1.0000000000
5145 Simple_repeat 52 TE_peak all_peaks 0.6190476190
5146 ERVL 402 TE_peak all_peaks 1.0000000000
5147 Simple_repeat 25 TE_peak all_peaks 1.0000000000
5148 MIR 209 TE_peak all_peaks 0.9812206573
5149 Low_complexity 34 TE_peak all_peaks 0.5230769231
5150 MIR 106 TE_peak all_peaks 1.0000000000
5151 L2 234 TE_peak all_peaks 1.0000000000
5152 <NA> NA not_TE_peak all_peaks NA
5153 MIR 157 TE_peak all_peaks 1.0000000000
5154 ERVL 321 TE_peak all_peaks 0.8722826087
5155 <NA> NA not_TE_peak all_peaks NA
5156 <NA> NA not_TE_peak all_peaks NA
5157 Simple_repeat 46 TE_peak all_peaks 1.0000000000
5158 <NA> NA not_TE_peak all_peaks NA
5159 L1 51 not_TE_peak all_peaks 0.2670157068
5160 Simple_repeat 22 TE_peak all_peaks 1.0000000000
5161 L2 48 TE_peak all_peaks 1.0000000000
5162 MIR 43 not_TE_peak all_peaks 0.3981481481
5163 L2 9 not_TE_peak all_peaks 0.0299003322
5164 ERVL 280 TE_peak all_peaks 1.0000000000
5165 ERVL 12 not_TE_peak all_peaks 0.0991735537
5166 <NA> NA not_TE_peak all_peaks NA
5167 Simple_repeat 26 TE_peak all_peaks 1.0000000000
5168 Simple_repeat 72 TE_peak all_peaks 1.0000000000
5169 ERVL 130 TE_peak all_peaks 0.5855855856
5170 Alu 36 not_TE_peak all_peaks 0.1309090909
5171 Simple_repeat 19 TE_peak all_peaks 1.0000000000
5172 MIR 48 not_TE_peak all_peaks 0.2891566265
5173 Low_complexity 67 TE_peak all_peaks 1.0000000000
5174 MIR 81 not_TE_peak all_peaks 0.3838862559
5175 Gypsy 440 TE_peak all_peaks 1.0000000000
5176 Alu 162 TE_peak all_peaks 0.5276872964
5177 hAT-Charlie 32 not_TE_peak all_peaks 0.4923076923
5178 MIR 63 TE_peak all_peaks 1.0000000000
5179 TcMar-Tigger 294 TE_peak all_peaks 0.5345454545
5180 L1 57 not_TE_peak all_peaks 0.0413943355
5181 MIR 150 TE_peak all_peaks 0.7500000000
5182 L2 386 TE_peak all_peaks 1.0000000000
5183 MIR 128 TE_peak all_peaks 0.8152866242
5184 <NA> NA not_TE_peak all_peaks NA
5185 <NA> NA not_TE_peak all_peaks NA
5186 MIR 97 TE_peak all_peaks 1.0000000000
5187 ERVL-MaLR 301 TE_peak all_peaks 0.7859007833
5188 <NA> NA not_TE_peak all_peaks NA
5189 Simple_repeat 64 TE_peak all_peaks 1.0000000000
5190 Simple_repeat 12 TE_peak all_peaks 1.0000000000
5191 Simple_repeat 22 TE_peak all_peaks 1.0000000000
5192 Simple_repeat 26 TE_peak all_peaks 1.0000000000
5193 Simple_repeat 80 TE_peak all_peaks 1.0000000000
5194 <NA> NA not_TE_peak all_peaks NA
5195 <NA> NA not_TE_peak all_peaks NA
5196 <NA> NA not_TE_peak all_peaks NA
5197 L1 58 not_TE_peak all_peaks 0.4000000000
5198 Alu 60 not_TE_peak all_peaks 0.2419354839
5199 MIR 136 TE_peak all_peaks 1.0000000000
5200 Alu 12 not_TE_peak all_peaks 0.0383386581
5201 L1 117 TE_peak all_peaks 1.0000000000
5202 MIR 95 TE_peak all_peaks 1.0000000000
5203 Alu 256 TE_peak all_peaks 0.9446494465
5204 <NA> NA not_TE_peak all_peaks NA
5205 Alu 148 not_TE_peak all_peaks 0.4743589744
5206 Simple_repeat 25 TE_peak all_peaks 1.0000000000
5207 ERVL-MaLR 247 not_TE_peak all_peaks 0.4243986254
5208 Alu 142 not_TE_peak all_peaks 0.4733333333
5209 L2 292 TE_peak all_peaks 1.0000000000
5210 Alu 58 not_TE_peak all_peaks 0.1986301370
5211 ERVL-MaLR 174 TE_peak all_peaks 1.0000000000
5212 <NA> NA not_TE_peak all_peaks NA
5213 RTE-X 53 TE_peak all_peaks 1.0000000000
5214 hAT-Charlie 52 TE_peak all_peaks 1.0000000000
5215 Low_complexity 39 TE_peak all_peaks 1.0000000000
5216 Alu 53 not_TE_peak all_peaks 0.1778523490
5217 MIR 149 TE_peak all_peaks 0.6742081448
5218 Simple_repeat 55 TE_peak all_peaks 1.0000000000
5219 ERVL 44 TE_peak all_peaks 0.5000000000
5220 Simple_repeat 54 TE_peak all_peaks 1.0000000000
5221 Alu 288 TE_peak all_peaks 1.0000000000
5222 L2 197 TE_peak all_peaks 1.0000000000
5223 Alu 76 not_TE_peak all_peaks 0.2620689655
5224 hAT-Charlie 207 TE_peak all_peaks 1.0000000000
5225 Alu 105 TE_peak all_peaks 0.7777777778
5226 Alu 61 not_TE_peak all_peaks 0.2013201320
5227 Alu 306 TE_peak all_peaks 1.0000000000
5228 L1 214 TE_peak all_peaks 1.0000000000
5229 Alu 105 not_TE_peak all_peaks 0.3343949045
5230 Alu 132 TE_peak all_peaks 0.8000000000
5231 L2 136 TE_peak all_peaks 1.0000000000
5232 <NA> NA not_TE_peak all_peaks NA
5233 Simple_repeat 42 TE_peak all_peaks 1.0000000000
5234 Simple_repeat 30 TE_peak all_peaks 1.0000000000
5235 <NA> NA not_TE_peak all_peaks NA
5236 MIR 66 TE_peak all_peaks 1.0000000000
5237 hAT-Tip100 112 TE_peak all_peaks 1.0000000000
5238 L1 31 not_TE_peak all_peaks 0.2672413793
5239 MIR 66 not_TE_peak all_peaks 0.2920353982
5240 MIR 64 TE_peak all_peaks 1.0000000000
5241 <NA> NA not_TE_peak all_peaks NA
5242 Simple_repeat 34 TE_peak all_peaks 1.0000000000
5243 Simple_repeat 19 TE_peak all_peaks 1.0000000000
5244 Alu 27 not_TE_peak all_peaks 0.1764705882
5245 L2 432 not_TE_peak all_peaks 0.2462941847
5246 Simple_repeat 34 TE_peak all_peaks 1.0000000000
5247 <NA> NA not_TE_peak all_peaks NA
5248 <NA> NA not_TE_peak all_peaks NA
5249 <NA> NA not_TE_peak all_peaks NA
5250 Simple_repeat 47 TE_peak all_peaks 1.0000000000
5251 MIR 57 not_TE_peak all_peaks 0.2923076923
5252 hAT-Charlie 156 TE_peak all_peaks 1.0000000000
5253 MIR 36 not_TE_peak all_peaks 0.1578947368
5254 <NA> NA not_TE_peak all_peaks NA
5255 L2 120 TE_peak all_peaks 0.5128205128
5256 Alu 43 not_TE_peak all_peaks 0.1279761905
5257 <NA> NA not_TE_peak all_peaks NA
5258 <NA> NA not_TE_peak all_peaks NA
5259 <NA> NA not_TE_peak all_peaks NA
5260 Alu 64 not_TE_peak all_peaks 0.2133333333
5261 Alu 163 TE_peak all_peaks 1.0000000000
5262 L2 163 TE_peak all_peaks 1.0000000000
5263 MIR 8 not_TE_peak all_peaks 0.1333333333
5264 <NA> NA not_TE_peak all_peaks NA
5265 <NA> NA not_TE_peak all_peaks NA
5266 Simple_repeat 20 TE_peak all_peaks 0.5405405405
5267 Alu 292 TE_peak all_peaks 1.0000000000
5268 Simple_repeat 41 TE_peak all_peaks 1.0000000000
5269 Alu 62 not_TE_peak all_peaks 0.2006472492
5270 <NA> NA not_TE_peak all_peaks NA
5271 L2 23 not_TE_peak all_peaks 0.0923694779
5272 Alu 295 TE_peak all_peaks 1.0000000000
5273 Alu 57 not_TE_peak all_peaks 0.1832797428
5274 <NA> NA not_TE_peak all_peaks NA
5275 SVA 441 not_TE_peak all_peaks 0.2679222357
5276 Alu 180 TE_peak all_peaks 0.6405693950
5277 <NA> NA not_TE_peak all_peaks NA
5278 Low_complexity 40 TE_peak all_peaks 1.0000000000
5279 MIR 57 not_TE_peak all_peaks 0.3064516129
5280 L2 80 not_TE_peak all_peaks 0.4301075269
5281 MIR 57 TE_peak all_peaks 1.0000000000
5282 L2 90 TE_peak all_peaks 1.0000000000
5283 hAT-Blackjack 87 TE_peak all_peaks 1.0000000000
5284 <NA> NA not_TE_peak all_peaks NA
5285 <NA> NA not_TE_peak all_peaks NA
5286 <NA> NA not_TE_peak all_peaks NA
5287 Alu 62 not_TE_peak all_peaks 0.2026143791
5288 L2 215 TE_peak all_peaks 0.6039325843
5289 <NA> NA not_TE_peak all_peaks NA
5290 Simple_repeat 33 TE_peak all_peaks 1.0000000000
5291 ERVL-MaLR 367 TE_peak all_peaks 0.8265765766
5292 <NA> NA not_TE_peak all_peaks NA
5293 <NA> NA not_TE_peak all_peaks NA
5294 MIR 245 TE_peak all_peaks 0.9919028340
5295 Alu 117 not_TE_peak all_peaks 0.3836065574
5296 ERV1 336 TE_peak all_peaks 0.5685279188
5297 <NA> NA not_TE_peak all_peaks NA
5298 <NA> NA not_TE_peak all_peaks NA
5299 <NA> NA not_TE_peak all_peaks NA
5300 Alu 115 TE_peak all_peaks 0.5088495575
5301 Alu 60 not_TE_peak all_peaks 0.2033898305
5302 <NA> NA not_TE_peak all_peaks NA
5303 <NA> NA not_TE_peak all_peaks NA
5304 <NA> NA not_TE_peak all_peaks NA
5305 Alu 71 not_TE_peak all_peaks 0.2374581940
5306 hAT-Charlie 117 TE_peak all_peaks 1.0000000000
5307 Low_complexity 76 TE_peak all_peaks 1.0000000000
5308 Simple_repeat 10 TE_peak all_peaks 1.0000000000
5309 Simple_repeat 42 TE_peak all_peaks 1.0000000000
5310 Simple_repeat 22 TE_peak all_peaks 1.0000000000
5311 Simple_repeat 39 TE_peak all_peaks 1.0000000000
5312 Simple_repeat 44 TE_peak all_peaks 1.0000000000
5313 <NA> NA not_TE_peak all_peaks NA
5314 <NA> NA not_TE_peak all_peaks NA
5315 <NA> NA not_TE_peak all_peaks NA
5316 <NA> NA not_TE_peak all_peaks NA
5317 Alu 121 not_TE_peak all_peaks 0.4464944649
5318 <NA> NA not_TE_peak all_peaks NA
5319 Alu 177 TE_peak all_peaks 0.5900000000
5320 Alu 162 TE_peak all_peaks 1.0000000000
5321 Alu 73 not_TE_peak all_peaks 0.2417218543
5322 Alu 158 TE_peak all_peaks 0.5146579805
5323 <NA> NA not_TE_peak all_peaks NA
5324 L2 201 TE_peak all_peaks 0.9054054054
5325 Alu 114 TE_peak all_peaks 0.6404494382
5326 L2 264 TE_peak all_peaks 1.0000000000
5327 Alu 63 not_TE_peak all_peaks 0.2086092715
5328 L2 98 TE_peak all_peaks 1.0000000000
5329 MIR 113 TE_peak all_peaks 1.0000000000
5330 <NA> NA not_TE_peak all_peaks NA
5331 <NA> NA not_TE_peak all_peaks NA
5332 MIR 33 not_TE_peak all_peaks 0.1764705882
5333 L2 119 TE_peak all_peaks 1.0000000000
5334 Simple_repeat 40 TE_peak all_peaks 1.0000000000
5335 Simple_repeat 33 TE_peak all_peaks 1.0000000000
5336 Simple_repeat 6 not_TE_peak all_peaks 0.1132075472
5337 L2 55 not_TE_peak all_peaks 0.3179190751
5338 <NA> NA not_TE_peak all_peaks NA
5339 <NA> NA not_TE_peak all_peaks NA
5340 Alu 42 not_TE_peak all_peaks 0.1409395973
5341 Alu 156 TE_peak all_peaks 0.5131578947
5342 L1 18 TE_peak all_peaks 1.0000000000
5343 Alu 91 not_TE_peak all_peaks 0.3181818182
5344 Alu 52 not_TE_peak all_peaks 0.1774744027
5345 L1 64 TE_peak all_peaks 1.0000000000
5346 Alu 143 TE_peak all_peaks 0.5296296296
5347 L2 36 not_TE_peak all_peaks 0.0591133005
5348 L2 153 TE_peak all_peaks 1.0000000000
5349 hAT-Charlie 145 not_TE_peak all_peaks 0.2561837456
5350 L2 97 TE_peak all_peaks 1.0000000000
5351 L2 342 TE_peak all_peaks 1.0000000000
5352 Alu 54 not_TE_peak all_peaks 0.1788079470
5353 <NA> NA not_TE_peak all_peaks NA
5354 <NA> NA not_TE_peak all_peaks NA
5355 <NA> NA not_TE_peak all_peaks NA
5356 MIR 104 TE_peak all_peaks 1.0000000000
5357 Low_complexity 107 TE_peak all_peaks 1.0000000000
5358 Simple_repeat 63 TE_peak all_peaks 1.0000000000
5359 Simple_repeat 76 TE_peak all_peaks 1.0000000000
5360 Simple_repeat 40 TE_peak all_peaks 1.0000000000
5361 Simple_repeat 61 TE_peak all_peaks 1.0000000000
5362 hAT-Charlie 46 not_TE_peak all_peaks 0.3865546218
5363 ERVL 71 not_TE_peak all_peaks 0.1682464455
5364 Alu 129 not_TE_peak all_peaks 0.4623655914
5365 ERVL 76 not_TE_peak all_peaks 0.1968911917
5366 L2 610 TE_peak all_peaks 1.0000000000
5367 L2 243 not_TE_peak all_peaks 0.4347048301
5368 MIR 173 TE_peak all_peaks 0.8357487923
5369 <NA> NA not_TE_peak all_peaks NA
5370 Simple_repeat 41 TE_peak all_peaks 1.0000000000
5371 Low_complexity 56 TE_peak all_peaks 1.0000000000
5372 Simple_repeat 43 TE_peak all_peaks 1.0000000000
5373 Simple_repeat 32 TE_peak all_peaks 1.0000000000
5374 Simple_repeat 27 not_TE_peak all_peaks 0.3333333333
5375 hAT-Charlie 159 TE_peak all_peaks 1.0000000000
5376 <NA> NA not_TE_peak all_peaks NA
5377 Simple_repeat 4 not_TE_peak all_peaks 0.0370370370
5378 Simple_repeat 25 TE_peak all_peaks 1.0000000000
5379 Low_complexity 31 TE_peak all_peaks 1.0000000000
5380 ERVL? 164 TE_peak all_peaks 0.6212121212
5381 ERVL 179 TE_peak all_peaks 1.0000000000
5382 ERV1 276 TE_peak all_peaks 0.6634615385
5383 Simple_repeat 47 TE_peak all_peaks 1.0000000000
5384 ERVL-MaLR 50 TE_peak all_peaks 1.0000000000
5385 MIR 92 not_TE_peak all_peaks 0.3579766537
5386 MIR 58 TE_peak all_peaks 0.5043478261
5387 Alu 82 TE_peak all_peaks 0.7321428571
5388 <NA> NA not_TE_peak all_peaks NA
5389 hAT-Charlie 8 not_TE_peak all_peaks 0.0888888889
5390 L2 141 not_TE_peak all_peaks 0.3248847926
5391 Simple_repeat 18 not_TE_peak all_peaks 0.3600000000
5392 Low_complexity 78 TE_peak all_peaks 1.0000000000
5393 Low_complexity 51 TE_peak all_peaks 1.0000000000
5394 L2 67 TE_peak all_peaks 1.0000000000
5395 MIR 55 not_TE_peak all_peaks 0.2777777778
5396 MIR 53 TE_peak all_peaks 1.0000000000
5397 MIR 76 TE_peak all_peaks 0.5135135135
5398 MIR 168 TE_peak all_peaks 1.0000000000
5399 MIR 39 TE_peak all_peaks 1.0000000000
5400 MIR 181 TE_peak all_peaks 1.0000000000
5401 MIR 75 TE_peak all_peaks 0.5067567568
5402 Alu 39 not_TE_peak all_peaks 0.1477272727
5403 MIR 34 not_TE_peak all_peaks 0.1611374408
5404 MIR 171 TE_peak all_peaks 0.7844036697
5405 MIR 206 TE_peak all_peaks 1.0000000000
5406 Alu 152 not_TE_peak all_peaks 0.4967320261
5407 MIR 188 TE_peak all_peaks 1.0000000000
5408 MIR 79 not_TE_peak all_peaks 0.3495575221
5409 <NA> NA not_TE_peak all_peaks NA
5410 Simple_repeat 43 TE_peak all_peaks 1.0000000000
5411 Low_complexity 35 TE_peak all_peaks 1.0000000000
5412 MIR 85 TE_peak all_peaks 0.8500000000
5413 ERV1 71 TE_peak all_peaks 1.0000000000
5414 hAT-Blackjack 109 TE_peak all_peaks 1.0000000000
5415 Alu 182 TE_peak all_peaks 0.5814696486
5416 ERVL-MaLR 15 not_TE_peak all_peaks 0.0602409639
5417 Alu 116 TE_peak all_peaks 1.0000000000
5418 MIR 54 TE_peak all_peaks 1.0000000000
5419 MIR 90 TE_peak all_peaks 1.0000000000
5420 CR1 461 TE_peak all_peaks 1.0000000000
5421 MIR 8 not_TE_peak all_peaks 0.1012658228
5422 <NA> NA not_TE_peak all_peaks NA
5423 <NA> NA not_TE_peak all_peaks NA
5424 Alu 190 TE_peak all_peaks 0.8050847458
5425 MIR 129 TE_peak all_peaks 1.0000000000
5426 MIR 136 TE_peak all_peaks 0.5762711864
5427 L2 240 TE_peak all_peaks 1.0000000000
5428 Alu 59 not_TE_peak all_peaks 0.4370370370
5429 ERV1 412 TE_peak all_peaks 0.8000000000
5430 hAT-Charlie 155 TE_peak all_peaks 1.0000000000
5431 L2 11 not_TE_peak all_peaks 0.1089108911
5432 Alu 43 not_TE_peak all_peaks 0.1457627119
5433 Simple_repeat 20 TE_peak all_peaks 1.0000000000
5434 CR1 274 TE_peak all_peaks 0.9820788530
5435 ERVL-MaLR 84 TE_peak all_peaks 0.6131386861
5436 <NA> NA not_TE_peak all_peaks NA
5437 <NA> NA not_TE_peak all_peaks NA
5438 MIR 99 not_TE_peak all_peaks 0.4647887324
5439 L2 5 not_TE_peak all_peaks 0.0183150183
5440 CR1 136 TE_peak all_peaks 1.0000000000
5441 CR1 18 not_TE_peak all_peaks 0.2195121951
5442 Alu 240 TE_peak all_peaks 0.8791208791
5443 Alu 75 not_TE_peak all_peaks 0.2329192547
5444 Alu 24 not_TE_peak all_peaks 0.0745341615
5445 L2 111 not_TE_peak all_peaks 0.4352941176
5446 Simple_repeat 44 TE_peak all_peaks 1.0000000000
5447 Alu 45 not_TE_peak all_peaks 0.1551724138
5448 MIR 244 TE_peak all_peaks 1.0000000000
5449 MIR 192 TE_peak all_peaks 1.0000000000
5450 Alu 221 TE_peak all_peaks 0.7620689655
5451 L2 103 TE_peak all_peaks 1.0000000000
5452 L2 10 not_TE_peak all_peaks 0.1612903226
5453 Alu 71 not_TE_peak all_peaks 0.2358803987
5454 L1 127 not_TE_peak all_peaks 0.2326007326
5455 ERVK 477 not_TE_peak all_peaks 0.4774774775
5456 MIR 222 TE_peak all_peaks 1.0000000000
5457 MIR 119 TE_peak all_peaks 1.0000000000
5458 L2 35 not_TE_peak all_peaks 0.2892561983
5459 Low_complexity 53 TE_peak all_peaks 1.0000000000
5460 L2 101 TE_peak all_peaks 1.0000000000
5461 <NA> NA not_TE_peak all_peaks NA
5462 Alu 294 TE_peak all_peaks 1.0000000000
5463 <NA> NA not_TE_peak all_peaks NA
5464 hAT-Charlie 221 TE_peak all_peaks 1.0000000000
5465 Alu 120 not_TE_peak all_peaks 0.3870967742
5466 MIR 73 TE_peak all_peaks 1.0000000000
5467 MIR 146 TE_peak all_peaks 1.0000000000
5468 Alu 214 TE_peak all_peaks 0.6925566343
5469 ERVL-MaLR 161 TE_peak all_peaks 1.0000000000
5470 MIR 143 TE_peak all_peaks 1.0000000000
5471 Simple_repeat 210 TE_peak all_peaks 0.8936170213
5472 <NA> NA not_TE_peak all_peaks NA
5473 Low_complexity 29 TE_peak all_peaks 1.0000000000
5474 MIR 232 TE_peak all_peaks 1.0000000000
5475 Alu 275 TE_peak all_peaks 0.8957654723
5476 MIR 159 TE_peak all_peaks 1.0000000000
5477 L1 188 not_TE_peak all_peaks 0.2596685083
5478 MIR 49 not_TE_peak all_peaks 0.4949494949
5479 Simple_repeat 62 TE_peak all_peaks 1.0000000000
5480 Low_complexity 56 TE_peak all_peaks 1.0000000000
5481 Simple_repeat 29 TE_peak all_peaks 1.0000000000
5482 Low_complexity 47 TE_peak all_peaks 1.0000000000
5483 <NA> NA not_TE_peak all_peaks NA
5484 CR1 132 TE_peak all_peaks 1.0000000000
5485 Alu 83 TE_peak all_peaks 0.7545454545
5486 ERVL-MaLR 264 TE_peak all_peaks 1.0000000000
5487 ERVL 197 TE_peak all_peaks 1.0000000000
5488 ERVL 423 TE_peak all_peaks 0.9591836735
5489 MIR 2 not_TE_peak all_peaks 0.0135135135
5490 L2 22 not_TE_peak all_peaks 0.1078431373
5491 Simple_repeat 39 TE_peak all_peaks 1.0000000000
5492 <NA> NA not_TE_peak all_peaks NA
5493 L2 80 not_TE_peak all_peaks 0.4848484848
5494 <NA> NA not_TE_peak all_peaks NA
5495 Alu 56 not_TE_peak all_peaks 0.1917808219
5496 hAT-Charlie 116 TE_peak all_peaks 1.0000000000
5497 Alu 37 not_TE_peak all_peaks 0.1262798635
5498 ERV1 313 TE_peak all_peaks 0.8346666667
5499 TcMar-Tigger 38 not_TE_peak all_peaks 0.3304347826
5500 L1 87 TE_peak all_peaks 1.0000000000
5501 ERVL 472 TE_peak all_peaks 1.0000000000
5502 ERVL 46 not_TE_peak all_peaks 0.1614035088
5503 <NA> NA not_TE_peak all_peaks NA
5504 Simple_repeat 40 TE_peak all_peaks 1.0000000000
5505 <NA> NA not_TE_peak all_peaks NA
5506 MIR 82 TE_peak all_peaks 0.5093167702
5507 MIR 3 not_TE_peak all_peaks 0.0157068063
5508 <NA> NA not_TE_peak all_peaks NA
5509 ERVL-MaLR 73 not_TE_peak all_peaks 0.1597374179
5510 L2 164 TE_peak all_peaks 1.0000000000
5511 L2 454 TE_peak all_peaks 1.0000000000
5512 L2 318 not_TE_peak all_peaks 0.3878048780
5513 MIR 37 not_TE_peak all_peaks 0.1321428571
5514 Simple_repeat 34 TE_peak all_peaks 1.0000000000
5515 MIR 98 TE_peak all_peaks 1.0000000000
5516 <NA> NA not_TE_peak all_peaks NA
5517 <NA> NA not_TE_peak all_peaks NA
5518 Alu 91 not_TE_peak all_peaks 0.3137931034
5519 hAT-Charlie 128 TE_peak all_peaks 1.0000000000
5520 <NA> NA not_TE_peak all_peaks NA
5521 MIR 231 TE_peak all_peaks 1.0000000000
5522 Alu 77 not_TE_peak all_peaks 0.2558139535
5523 TcMar-Tigger 115 TE_peak all_peaks 1.0000000000
5524 Alu 217 TE_peak all_peaks 0.8097014925
5525 <NA> NA not_TE_peak all_peaks NA
5526 L2 101 TE_peak all_peaks 1.0000000000
5527 Alu 27 not_TE_peak all_peaks 0.1888111888
5528 <NA> NA not_TE_peak all_peaks NA
5529 MIR 53 TE_peak all_peaks 1.0000000000
5530 hAT-Ac 71 TE_peak all_peaks 1.0000000000
5531 <NA> NA not_TE_peak all_peaks NA
5532 MIR 175 TE_peak all_peaks 0.9358288770
5533 L2 131 TE_peak all_peaks 1.0000000000
5534 <NA> NA not_TE_peak all_peaks NA
5535 <NA> NA not_TE_peak all_peaks NA
5536 MIR 51 not_TE_peak all_peaks 0.2246696035
5537 L2 276 TE_peak all_peaks 1.0000000000
5538 L2 115 TE_peak all_peaks 0.9913793103
5539 Simple_repeat 17 TE_peak all_peaks 0.7083333333
5540 Simple_repeat 60 TE_peak all_peaks 1.0000000000
5541 Simple_repeat 43 TE_peak all_peaks 1.0000000000
5542 MIR 126 TE_peak all_peaks 1.0000000000
5543 L2 49 TE_peak all_peaks 1.0000000000
5544 <NA> NA not_TE_peak all_peaks NA
5545 hAT-Tip100 88 TE_peak all_peaks 1.0000000000
5546 MIR 83 TE_peak all_peaks 1.0000000000
5547 <NA> NA not_TE_peak all_peaks NA
5548 MIR 8 not_TE_peak all_peaks 0.0941176471
5549 hAT-Tip100 100 TE_peak all_peaks 1.0000000000
5550 <NA> NA not_TE_peak all_peaks NA
5551 <NA> NA not_TE_peak all_peaks NA
5552 Alu 86 TE_peak all_peaks 0.5657894737
5553 MIR 160 TE_peak all_peaks 1.0000000000
5554 TcMar-Tigger 102 TE_peak all_peaks 1.0000000000
5555 L2 76 not_TE_peak all_peaks 0.1233766234
5556 <NA> NA not_TE_peak all_peaks NA
5557 Alu 32 not_TE_peak all_peaks 0.1056105611
5558 MIR 175 TE_peak all_peaks 1.0000000000
5559 Alu 94 TE_peak all_peaks 1.0000000000
5560 MIR 46 TE_peak all_peaks 1.0000000000
5561 MIR 135 TE_peak all_peaks 0.7297297297
5562 TcMar-Tigger 173 TE_peak all_peaks 0.6200716846
5563 L2 83 TE_peak all_peaks 0.5684931507
5564 Alu 31 not_TE_peak all_peaks 0.2440944882
5565 Simple_repeat 21 TE_peak all_peaks 1.0000000000
5566 Simple_repeat 32 TE_peak all_peaks 1.0000000000
5567 MIR 15 not_TE_peak all_peaks 0.0595238095
5568 MIR 41 not_TE_peak all_peaks 0.4939759036
5569 Alu 70 not_TE_peak all_peaks 0.2153846154
5570 Alu 256 TE_peak all_peaks 0.8561872910
5571 hAT-Charlie 151 TE_peak all_peaks 1.0000000000
5572 Simple_repeat 25 TE_peak all_peaks 1.0000000000
5573 Alu 103 not_TE_peak all_peaks 0.3652482270
5574 Alu 31 not_TE_peak all_peaks 0.2384615385
5575 MIR 94 TE_peak all_peaks 1.0000000000
5576 hAT-Charlie 24 not_TE_peak all_peaks 0.1142857143
5577 MIR 23 not_TE_peak all_peaks 0.0898437500
5578 <NA> NA not_TE_peak all_peaks NA
5579 L2 77 TE_peak all_peaks 1.0000000000
5580 hAT-Charlie 92 not_TE_peak all_peaks 0.4946236559
5581 L2 37 not_TE_peak all_peaks 0.1737089202
5582 Alu 151 TE_peak all_peaks 0.5279720280
5583 L2 340 TE_peak all_peaks 1.0000000000
5584 Alu 253 TE_peak all_peaks 0.9405204461
5585 L2 90 not_TE_peak all_peaks 0.3600000000
5586 L2 167 TE_peak all_peaks 0.6094890511
5587 Alu 53 not_TE_peak all_peaks 0.1766666667
5588 Simple_repeat 59 TE_peak all_peaks 1.0000000000
5589 Low_complexity 51 TE_peak all_peaks 1.0000000000
5590 MIR 156 TE_peak all_peaks 0.7959183673
5591 <NA> NA not_TE_peak all_peaks NA
5592 MIR 47 not_TE_peak all_peaks 0.2126696833
5593 hAT-Ac 59 TE_peak all_peaks 1.0000000000
5594 MIR 104 not_TE_peak all_peaks 0.4521739130
5595 ERVL-MaLR 424 TE_peak all_peaks 1.0000000000
5596 L2 65 TE_peak all_peaks 0.6372549020
5597 <NA> NA not_TE_peak all_peaks NA
5598 <NA> NA not_TE_peak all_peaks NA
5599 Alu 96 not_TE_peak all_peaks 0.3221476510
5600 L2 14 TE_peak all_peaks 1.0000000000
5601 Alu 289 TE_peak all_peaks 1.0000000000
5602 L2 74 TE_peak all_peaks 1.0000000000
5603 MIR 125 TE_peak all_peaks 1.0000000000
5604 MIR 269 TE_peak all_peaks 0.9853479853
5605 Simple_repeat 42 TE_peak all_peaks 1.0000000000
5606 <NA> NA not_TE_peak all_peaks NA
5607 Simple_repeat 5 not_TE_peak all_peaks 0.1666666667
5608 Simple_repeat 19 TE_peak all_peaks 1.0000000000
5609 MIR 68 not_TE_peak all_peaks 0.2869198312
5610 Simple_repeat 9 TE_peak all_peaks 0.5294117647
5611 MIR 111 TE_peak all_peaks 1.0000000000
5612 L2 30 TE_peak all_peaks 0.5660377358
5613 Alu 201 TE_peak all_peaks 0.7027972028
5614 hAT-Charlie 164 TE_peak all_peaks 1.0000000000
5615 Alu 152 not_TE_peak all_peaks 0.4935064935
5616 <NA> NA not_TE_peak all_peaks NA
5617 Alu 74 not_TE_peak all_peaks 0.2402597403
5618 CR1 144 TE_peak all_peaks 1.0000000000
5619 CR1 70 TE_peak all_peaks 0.6086956522
5620 L2 451 TE_peak all_peaks 1.0000000000
5621 L2 83 TE_peak all_peaks 0.6287878788
5622 ERV1 689 not_TE_peak all_peaks 0.4366286439
5623 ERVL-MaLR 431 not_TE_peak all_peaks 0.3445243805
5624 <NA> NA not_TE_peak all_peaks NA
5625 L2 61 not_TE_peak all_peaks 0.1854103343
5626 L2 236 TE_peak all_peaks 0.8166089965
5627 Alu 301 TE_peak all_peaks 1.0000000000
5628 Alu 164 TE_peak all_peaks 0.5141065831
5629 L2 374 TE_peak all_peaks 0.9468354430
5630 CR1 67 not_TE_peak all_peaks 0.3350000000
5631 Simple_repeat 102 TE_peak all_peaks 1.0000000000
5632 Alu 30 not_TE_peak all_peaks 0.1818181818
5633 ERVL-MaLR 469 TE_peak all_peaks 0.8086206897
5634 L2 95 not_TE_peak all_peaks 0.3064516129
5635 MIR 89 TE_peak all_peaks 0.8165137615
5636 MIR 160 TE_peak all_peaks 1.0000000000
5637 hAT-Tip100 71 not_TE_peak all_peaks 0.3463414634
5638 CR1 46 TE_peak all_peaks 1.0000000000
5639 MIR 154 TE_peak all_peaks 1.0000000000
5640 MIR 59 TE_peak all_peaks 1.0000000000
5641 MIR 117 TE_peak all_peaks 1.0000000000
5642 MIR 59 TE_peak all_peaks 1.0000000000
5643 L2 5 not_TE_peak all_peaks 0.0095419847
5644 ERVL 471 TE_peak all_peaks 0.9812500000
5645 Simple_repeat 30 TE_peak all_peaks 1.0000000000
5646 MIR 40 not_TE_peak all_peaks 0.3571428571
5647 <NA> NA not_TE_peak all_peaks NA
5648 Alu 89 not_TE_peak all_peaks 0.3047945205
5649 ERVL-MaLR 187 TE_peak all_peaks 0.9444444444
5650 ERVL-MaLR 86 TE_peak all_peaks 0.5584415584
5651 <NA> NA not_TE_peak all_peaks NA
5652 MIR 68 TE_peak all_peaks 1.0000000000
5653 L2 54 not_TE_peak all_peaks 0.2583732057
5654 ERVL-MaLR 283 TE_peak all_peaks 0.9792387543
5655 MIR 56 not_TE_peak all_peaks 0.2533936652
5656 <NA> NA not_TE_peak all_peaks NA
5657 L2 105 TE_peak all_peaks 0.6325301205
5658 MIR 4 not_TE_peak all_peaks 0.0655737705
5659 Simple_repeat 49 TE_peak all_peaks 1.0000000000
5660 Simple_repeat 57 TE_peak all_peaks 1.0000000000
5661 Simple_repeat 46 TE_peak all_peaks 1.0000000000
5662 Simple_repeat 47 TE_peak all_peaks 1.0000000000
5663 <NA> NA not_TE_peak all_peaks NA
5664 Simple_repeat 22 TE_peak all_peaks 1.0000000000
5665 hAT-Charlie 33 not_TE_peak all_peaks 0.3235294118
5666 MIR 85 TE_peak all_peaks 0.7203389831
5667 Simple_repeat 60 TE_peak all_peaks 1.0000000000
5668 Low_complexity 49 TE_peak all_peaks 1.0000000000
5669 <NA> NA not_TE_peak all_peaks NA
5670 MIR 27 not_TE_peak all_peaks 0.1569767442
5671 L2 97 not_TE_peak all_peaks 0.2304038005
5672 MIR 40 not_TE_peak all_peaks 0.2162162162
5673 MIR 135 TE_peak all_peaks 1.0000000000
5674 Simple_repeat 895 TE_peak all_peaks 0.5460646736
5675 <NA> NA not_TE_peak all_peaks NA
5676 ERVL-MaLR 61 not_TE_peak all_peaks 0.3210526316
5677 ERVL-MaLR 69 TE_peak all_peaks 1.0000000000
5678 MIR 91 TE_peak all_peaks 1.0000000000
5679 <NA> NA not_TE_peak all_peaks NA
5680 L2 288 not_TE_peak all_peaks 0.2086956522
5681 L2 233 TE_peak all_peaks 0.5810473815
5682 MIR 70 not_TE_peak all_peaks 0.2602230483
5683 L2 36 TE_peak all_peaks 0.5070422535
5684 Simple_repeat 22 TE_peak all_peaks 1.0000000000
5685 Simple_repeat 20 TE_peak all_peaks 1.0000000000
5686 MIR 157 TE_peak all_peaks 1.0000000000
5687 MIR 77 TE_peak all_peaks 1.0000000000
5688 <NA> NA not_TE_peak all_peaks NA
5689 MIR 270 TE_peak all_peaks 1.0000000000
5690 MIR 1 not_TE_peak all_peaks 0.0105263158
5691 MIR 158 TE_peak all_peaks 1.0000000000
5692 ERVL-MaLR 205 TE_peak all_peaks 0.6269113150
5693 L2 191 TE_peak all_peaks 1.0000000000
5694 L2 8 not_TE_peak all_peaks 0.0184331797
5695 Simple_repeat 42 TE_peak all_peaks 1.0000000000
5696 Simple_repeat 314 not_TE_peak all_peaks 0.0948353972
5697 CR1 32 not_TE_peak all_peaks 0.4324324324
5698 hAT-Charlie 87 not_TE_peak all_peaks 0.4531250000
5699 L2 185 TE_peak all_peaks 1.0000000000
5700 Simple_repeat 35 TE_peak all_peaks 1.0000000000
5701 <NA> NA not_TE_peak all_peaks NA
5702 <NA> NA not_TE_peak all_peaks NA
5703 ERVL-MaLR 120 TE_peak all_peaks 0.8759124088
5704 ERVL-MaLR 159 TE_peak all_peaks 1.0000000000
5705 L1 303 TE_peak all_peaks 1.0000000000
5706 L1 147 TE_peak all_peaks 0.6099585062
5707 <NA> NA not_TE_peak all_peaks NA
5708 hAT-Charlie 180 TE_peak all_peaks 1.0000000000
5709 L2 139 TE_peak all_peaks 0.8853503185
5710 <NA> NA not_TE_peak all_peaks NA
5711 L2 30 not_TE_peak all_peaks 0.2142857143
5712 L2 120 TE_peak all_peaks 1.0000000000
5713 MIR 96 not_TE_peak all_peaks 0.4465116279
5714 CR1 65 not_TE_peak all_peaks 0.1737967914
5715 MIR 72 TE_peak all_peaks 0.6260869565
5716 Simple_repeat 57 TE_peak all_peaks 1.0000000000
5717 <NA> NA not_TE_peak all_peaks NA
5718 L2 193 TE_peak all_peaks 0.5346260388
5719 L2 402 TE_peak all_peaks 1.0000000000
5720 L2 86 TE_peak all_peaks 1.0000000000
5721 MIR 169 TE_peak all_peaks 1.0000000000
5722 <NA> NA not_TE_peak all_peaks NA
5723 Alu 20 not_TE_peak all_peaks 0.0803212851
5724 L2 74 not_TE_peak all_peaks 0.3834196891
5725 CR1 87 TE_peak all_peaks 1.0000000000
5726 MIR 12 not_TE_peak all_peaks 0.0759493671
5727 <NA> NA not_TE_peak all_peaks NA
5728 <NA> NA not_TE_peak all_peaks NA
5729 Simple_repeat 50 TE_peak all_peaks 1.0000000000
5730 Simple_repeat 553 TE_peak all_peaks 0.9910394265
5731 ERV1 135 not_TE_peak all_peaks 0.1319648094
5732 MIR 35 not_TE_peak all_peaks 0.1682692308
5733 CR1 69 TE_peak all_peaks 0.8414634146
5734 MIR 211 TE_peak all_peaks 0.8902953586
5735 MIR 21 not_TE_peak all_peaks 0.1468531469
5736 Simple_repeat 21 TE_peak all_peaks 0.8400000000
5737 <NA> NA not_TE_peak all_peaks NA
5738 Alu 162 TE_peak all_peaks 1.0000000000
5739 CR1 80 TE_peak all_peaks 1.0000000000
5740 ERVL-MaLR 43 not_TE_peak all_peaks 0.1137566138
5741 MIR 176 TE_peak all_peaks 1.0000000000
5742 <NA> NA not_TE_peak all_peaks NA
5743 <NA> NA not_TE_peak all_peaks NA
5744 MIR 20 not_TE_peak all_peaks 0.1069518717
5745 <NA> NA not_TE_peak all_peaks NA
5746 L2 366 TE_peak all_peaks 1.0000000000
5747 L2 498 TE_peak all_peaks 0.7545454545
5748 MIR 129 TE_peak all_peaks 1.0000000000
5749 Alu 67 not_TE_peak all_peaks 0.2318339100
5750 <NA> NA not_TE_peak all_peaks NA
5751 Simple_repeat 485 TE_peak all_peaks 0.8248299320
5752 MIR 55 not_TE_peak all_peaks 0.4508196721
5753 hAT-Tip100 40 not_TE_peak all_peaks 0.2631578947
5754 L2 130 TE_peak all_peaks 1.0000000000
5755 L2 336 not_TE_peak all_peaks 0.4462151394
5756 L2 8 not_TE_peak all_peaks 0.0106241700
5757 L2 231 TE_peak all_peaks 1.0000000000
5758 ERVL 294 TE_peak all_peaks 0.6255319149
5759 Simple_repeat 30 TE_peak all_peaks 1.0000000000
5760 Simple_repeat 26 TE_peak all_peaks 1.0000000000
5761 <NA> NA not_TE_peak all_peaks NA
5762 CR1 145 TE_peak all_peaks 0.7591623037
5763 MIR 239 TE_peak all_peaks 1.0000000000
5764 <NA> NA not_TE_peak all_peaks NA
5765 <NA> NA not_TE_peak all_peaks NA
5766 L2 246 not_TE_peak all_peaks 0.2194469224
5767 Simple_repeat 30 not_TE_peak all_peaks 0.4225352113
5768 Simple_repeat 38 TE_peak all_peaks 1.0000000000
5769 <NA> NA not_TE_peak all_peaks NA
5770 MIR 84 TE_peak all_peaks 1.0000000000
5771 MIR 153 TE_peak all_peaks 0.6652173913
5772 ERVL-MaLR 124 TE_peak all_peaks 1.0000000000
5773 Simple_repeat 442 TE_peak all_peaks 1.0000000000
5774 Simple_repeat 36 TE_peak all_peaks 1.0000000000
5775 MIR 42 not_TE_peak all_peaks 0.1757322176
5776 Simple_repeat 45 TE_peak all_peaks 1.0000000000
5777 Simple_repeat 30 TE_peak all_peaks 1.0000000000
5778 Low_complexity 19 not_TE_peak all_peaks 0.2638888889
5779 Simple_repeat 41 TE_peak all_peaks 1.0000000000
5780 Simple_repeat 28 TE_peak all_peaks 1.0000000000
5781 MIR 67 not_TE_peak all_peaks 0.3087557604
5782 MIR 25 not_TE_peak all_peaks 0.0919117647
5783 Simple_repeat 58 TE_peak all_peaks 1.0000000000
5784 Alu 173 TE_peak all_peaks 0.5824915825
5785 <NA> NA not_TE_peak all_peaks NA
5786 <NA> NA not_TE_peak all_peaks NA
5787 L1 267 not_TE_peak all_peaks 0.3418693982
5788 L1 425 not_TE_peak all_peaks 0.1597143931
5789 L2 87 TE_peak all_peaks 0.6692307692
5790 hAT-Blackjack 90 TE_peak all_peaks 1.0000000000
5791 L2 91 TE_peak all_peaks 1.0000000000
5792 L2 111 TE_peak all_peaks 1.0000000000
5793 Alu 291 TE_peak all_peaks 1.0000000000
5794 L2 38 not_TE_peak all_peaks 0.1439393939
5795 L1 377 not_TE_peak all_peaks 0.1105896157
5796 CR1 138 not_TE_peak all_peaks 0.3965517241
5797 L2 243 TE_peak all_peaks 1.0000000000
5798 Alu 247 TE_peak all_peaks 0.8288590604
5799 Alu 254 TE_peak all_peaks 0.8610169492
5800 MIR 65 not_TE_peak all_peaks 0.4642857143
5801 <NA> NA not_TE_peak all_peaks NA
5802 TcMar-Tigger 509 TE_peak all_peaks 0.9024822695
5803 Simple_repeat 57 TE_peak all_peaks 1.0000000000
5804 Simple_repeat 65 TE_peak all_peaks 1.0000000000
5805 L2 72 TE_peak all_peaks 1.0000000000
5806 MIR 42 TE_peak all_peaks 1.0000000000
5807 Alu 39 not_TE_peak all_peaks 0.1270358306
5808 Simple_repeat 50 TE_peak all_peaks 1.0000000000
5809 <NA> NA not_TE_peak all_peaks NA
5810 MIR 107 TE_peak all_peaks 0.8230769231
5811 MIR 126 TE_peak all_peaks 1.0000000000
5812 <NA> NA not_TE_peak all_peaks NA
5813 L1 114 TE_peak all_peaks 1.0000000000
5814 Simple_repeat 33 TE_peak all_peaks 1.0000000000
5815 L1 91 not_TE_peak all_peaks 0.3684210526
5816 Simple_repeat 51 TE_peak all_peaks 1.0000000000
5817 MIR 11 not_TE_peak all_peaks 0.0733333333
5818 ERVL 201 not_TE_peak all_peaks 0.4085365854
5819 <NA> NA not_TE_peak all_peaks NA
5820 TcMar-Tigger 374 TE_peak all_peaks 0.6459412781
5821 ERV1 312 TE_peak all_peaks 0.8524590164
5822 MIR 127 TE_peak all_peaks 1.0000000000
5823 L2 100 TE_peak all_peaks 0.9259259259
5824 <NA> NA not_TE_peak all_peaks NA
5825 MIR 42 TE_peak all_peaks 0.5384615385
5826 Simple_repeat 47 TE_peak all_peaks 1.0000000000
5827 TcMar-Tigger 282 TE_peak all_peaks 0.7212276215
5828 L1 266 TE_peak all_peaks 0.8036253776
5829 <NA> NA not_TE_peak all_peaks NA
5830 <NA> NA not_TE_peak all_peaks NA
5831 <NA> NA not_TE_peak all_peaks NA
5832 <NA> NA not_TE_peak all_peaks NA
5833 L2 20 not_TE_peak all_peaks 0.2469135802
5834 MIR 212 TE_peak all_peaks 0.9137931034
5835 L1 85 TE_peak all_peaks 1.0000000000
5836 MIR 62 TE_peak all_peaks 1.0000000000
5837 ERVL-MaLR 109 not_TE_peak all_peaks 0.3168604651
5838 L2 87 TE_peak all_peaks 1.0000000000
5839 MIR 57 TE_peak all_peaks 0.5700000000
5840 MIR 209 TE_peak all_peaks 1.0000000000
5841 Low_complexity 46 TE_peak all_peaks 1.0000000000
5842 Simple_repeat 9 TE_peak all_peaks 1.0000000000
5843 MIR 71 TE_peak all_peaks 0.6228070175
5844 <NA> NA not_TE_peak all_peaks NA
5845 <NA> NA not_TE_peak all_peaks NA
5846 L1 235 not_TE_peak all_peaks 0.0930693069
5847 L1 128 not_TE_peak all_peaks 0.4830188679
5848 <NA> NA not_TE_peak all_peaks NA
5849 Simple_repeat 13 not_TE_peak all_peaks 0.2063492063
5850 Simple_repeat 83 TE_peak all_peaks 1.0000000000
5851 Simple_repeat 48 TE_peak all_peaks 1.0000000000
5852 L1 257 TE_peak all_peaks 0.5526881720
5853 L1 191 TE_peak all_peaks 0.5858895706
5854 L2 115 not_TE_peak all_peaks 0.3042328042
5855 Simple_repeat 38 TE_peak all_peaks 1.0000000000
5856 Simple_repeat 34 TE_peak all_peaks 1.0000000000
5857 MIR 44 TE_peak all_peaks 0.7719298246
5858 MIR 7 not_TE_peak all_peaks 0.0583333333
5859 <NA> NA not_TE_peak all_peaks NA
5860 <NA> NA not_TE_peak all_peaks NA
5861 Alu 16 not_TE_peak all_peaks 0.1403508772
5862 Simple_repeat 24 TE_peak all_peaks 1.0000000000
5863 L2 123 TE_peak all_peaks 0.8424657534
5864 MIR 67 TE_peak all_peaks 1.0000000000
5865 hAT-Charlie 101 TE_peak all_peaks 1.0000000000
5866 <NA> NA not_TE_peak all_peaks NA
5867 <NA> NA not_TE_peak all_peaks NA
5868 Simple_repeat 32 TE_peak all_peaks 1.0000000000
5869 MIR 78 TE_peak all_peaks 1.0000000000
5870 MIR 104 TE_peak all_peaks 1.0000000000
5871 Simple_repeat 37 TE_peak all_peaks 1.0000000000
5872 MIR 159 TE_peak all_peaks 0.7361111111
5873 MIR 123 TE_peak all_peaks 0.6684782609
5874 ERVL-MaLR 137 not_TE_peak all_peaks 0.4945848375
5875 L1 50 not_TE_peak all_peaks 0.1612903226
5876 ERV1 9 not_TE_peak all_peaks 0.1428571429
5877 L1 525 TE_peak all_peaks 0.7123473541
5878 <NA> NA not_TE_peak all_peaks NA
5879 MIR 59 TE_peak all_peaks 1.0000000000
5880 L1 21 not_TE_peak all_peaks 0.1500000000
5881 ERVL 507 not_TE_peak all_peaks 0.4145543745
5882 <NA> NA not_TE_peak all_peaks NA
5883 Simple_repeat 65 TE_peak all_peaks 0.9558823529
5884 CR1 470 TE_peak all_peaks 1.0000000000
5885 LTR 96 not_TE_peak all_peaks 0.4016736402
5886 <NA> NA not_TE_peak all_peaks NA
5887 L2 114 TE_peak all_peaks 1.0000000000
5888 L2 163 TE_peak all_peaks 1.0000000000
5889 Simple_repeat 32 TE_peak all_peaks 1.0000000000
5890 Simple_repeat 30 TE_peak all_peaks 1.0000000000
5891 MIR 121 TE_peak all_peaks 0.5170940171
5892 L1 32 not_TE_peak all_peaks 0.2622950820
5893 L1 512 not_TE_peak all_peaks 0.0854900651
5894 L1 7 not_TE_peak all_peaks 0.0099290780
5895 ERVL-MaLR 87 TE_peak all_peaks 1.0000000000
5896 MIR 190 TE_peak all_peaks 0.7421875000
5897 <NA> NA not_TE_peak all_peaks NA
5898 MIR 216 TE_peak all_peaks 1.0000000000
5899 MIR 24 not_TE_peak all_peaks 0.2926829268
5900 <NA> NA not_TE_peak all_peaks NA
5901 TcMar-Tigger 197 TE_peak all_peaks 0.6746575342
5902 L2 119 TE_peak all_peaks 0.8814814815
5903 <NA> NA not_TE_peak all_peaks NA
5904 MIR 162 TE_peak all_peaks 1.0000000000
5905 Alu 96 not_TE_peak all_peaks 0.3287671233
5906 <NA> NA not_TE_peak all_peaks NA
5907 hAT-Charlie 139 TE_peak all_peaks 1.0000000000
5908 L2 35 not_TE_peak all_peaks 0.0797266515
5909 Simple_repeat 55 not_TE_peak all_peaks 0.2340425532
5910 MIR 75 TE_peak all_peaks 1.0000000000
5911 L2 39 TE_peak all_peaks 0.5200000000
5912 ERVL 101 TE_peak all_peaks 1.0000000000
5913 Alu 53 not_TE_peak all_peaks 0.1720779221
5914 Alu 147 TE_peak all_peaks 0.8855421687
5915 MIR 230 TE_peak all_peaks 1.0000000000
5916 L2 91 TE_peak all_peaks 1.0000000000
5917 L2 225 TE_peak all_peaks 0.5936675462
5918 <NA> NA not_TE_peak all_peaks NA
5919 L2 323 TE_peak all_peaks 0.7494199536
5920 L2 305 TE_peak all_peaks 0.5407801418
5921 L2 270 not_TE_peak all_peaks 0.3268765133
5922 L2 158 not_TE_peak all_peaks 0.2548387097
5923 Low_complexity 68 TE_peak all_peaks 1.0000000000
5924 L2 299 TE_peak all_peaks 0.5761078998
5925 MIR 88 TE_peak all_peaks 1.0000000000
5926 Simple_repeat 42 TE_peak all_peaks 1.0000000000
5927 Simple_repeat 49 TE_peak all_peaks 1.0000000000
5928 <NA> NA not_TE_peak all_peaks NA
5929 <NA> NA not_TE_peak all_peaks NA
5930 Alu 51 not_TE_peak all_peaks 0.1639871383
5931 L2 195 TE_peak all_peaks 0.7768924303
5932 Alu 81 TE_peak all_peaks 0.5000000000
5933 <NA> NA not_TE_peak all_peaks NA
5934 <NA> NA not_TE_peak all_peaks NA
5935 <NA> NA not_TE_peak all_peaks NA
5936 MIR 116 TE_peak all_peaks 1.0000000000
5937 L2 168 TE_peak all_peaks 1.0000000000
5938 Simple_repeat 66 TE_peak all_peaks 1.0000000000
5939 Simple_repeat 39 TE_peak all_peaks 1.0000000000
5940 L1 94 TE_peak all_peaks 1.0000000000
5941 ERVL-MaLR 62 TE_peak all_peaks 0.5486725664
5942 ERVL 423 TE_peak all_peaks 0.6724960254
5943 ERVL 277 TE_peak all_peaks 1.0000000000
5944 ERVL 110 TE_peak all_peaks 1.0000000000
5945 L1 72 not_TE_peak all_peaks 0.3103448276
5946 ERVL 67 TE_peak all_peaks 0.6568627451
5947 ERVL 267 TE_peak all_peaks 1.0000000000
5948 L1 202 TE_peak all_peaks 0.5611111111
5949 L2 276 not_TE_peak all_peaks 0.2541436464
5950 L2 455 TE_peak all_peaks 0.5759493671
5951 L2 122 TE_peak all_peaks 1.0000000000
5952 Alu 68 TE_peak all_peaks 0.5312500000
5953 <NA> NA not_TE_peak all_peaks NA
5954 Low_complexity 55 TE_peak all_peaks 1.0000000000
5955 Simple_repeat 66 TE_peak all_peaks 1.0000000000
5956 Simple_repeat 42 TE_peak all_peaks 1.0000000000
5957 Simple_repeat 49 TE_peak all_peaks 1.0000000000
5958 Simple_repeat 41 TE_peak all_peaks 1.0000000000
5959 <NA> NA not_TE_peak all_peaks NA
5960 Simple_repeat 39 TE_peak all_peaks 1.0000000000
5961 L2 77 not_TE_peak all_peaks 0.1910669975
5962 L2 132 TE_peak all_peaks 1.0000000000
5963 MIR 115 TE_peak all_peaks 0.5180180180
5964 <NA> NA not_TE_peak all_peaks NA
5965 Simple_repeat 39 TE_peak all_peaks 1.0000000000
5966 <NA> NA not_TE_peak all_peaks NA
5967 <NA> NA not_TE_peak all_peaks NA
5968 MIR 73 TE_peak all_peaks 1.0000000000
5969 Simple_repeat 59 TE_peak all_peaks 1.0000000000
5970 Simple_repeat 37 TE_peak all_peaks 1.0000000000
5971 <NA> NA not_TE_peak all_peaks NA
5972 <NA> NA not_TE_peak all_peaks NA
5973 L2 96 TE_peak all_peaks 0.6808510638
5974 Alu 4 not_TE_peak all_peaks 0.0129032258
5975 hAT-Blackjack 99 TE_peak all_peaks 1.0000000000
5976 MIR 89 not_TE_peak all_peaks 0.3991031390
5977 MIR 15 not_TE_peak all_peaks 0.0700934579
5978 Simple_repeat 48 TE_peak all_peaks 1.0000000000
5979 L2 186 TE_peak all_peaks 0.7440000000
5980 Alu 131 not_TE_peak all_peaks 0.4440677966
5981 <NA> NA not_TE_peak all_peaks NA
5982 <NA> NA not_TE_peak all_peaks NA
5983 Simple_repeat 80 TE_peak all_peaks 1.0000000000
5984 Simple_repeat 33 TE_peak all_peaks 1.0000000000
5985 Low_complexity 77 TE_peak all_peaks 1.0000000000
5986 TcMar-Tigger 131 not_TE_peak all_peaks 0.3171912833
5987 Alu 142 TE_peak all_peaks 0.5182481752
5988 Alu 278 TE_peak all_peaks 1.0000000000
5989 L1 148 TE_peak all_peaks 1.0000000000
5990 ERVL-MaLR 11 not_TE_peak all_peaks 0.0303867403
5991 L1 34 not_TE_peak all_peaks 0.2023809524
5992 Simple_repeat 22 TE_peak all_peaks 1.0000000000
5993 L1 151 TE_peak all_peaks 0.5101351351
5994 ERVL-MaLR 154 TE_peak all_peaks 0.7230046948
5995 MIR 87 TE_peak all_peaks 1.0000000000
5996 MIR 16 not_TE_peak all_peaks 0.2807017544
5997 ERVL 226 not_TE_peak all_peaks 0.4870689655
5998 Simple_repeat 25 TE_peak all_peaks 1.0000000000
5999 L2 274 TE_peak all_peaks 1.0000000000
6000 L2 40 not_TE_peak all_peaks 0.3149606299
6001 L1 465 TE_peak all_peaks 0.6690647482
6002 ERVL 75 not_TE_peak all_peaks 0.2459016393
6003 CR1 245 TE_peak all_peaks 1.0000000000
6004 <NA> NA not_TE_peak all_peaks NA
6005 <NA> NA not_TE_peak all_peaks NA
6006 TcMar-Tigger 74 TE_peak all_peaks 1.0000000000
6007 TcMar-Tigger 64 TE_peak all_peaks 1.0000000000
6008 L1 840 TE_peak all_peaks 0.6942148760
6009 L2 234 TE_peak all_peaks 0.7959183673
6010 <NA> NA not_TE_peak all_peaks NA
6011 L2 41 TE_peak all_peaks 0.6212121212
6012 MIR 118 TE_peak all_peaks 1.0000000000
6013 L2 257 TE_peak all_peaks 0.8398692810
6014 <NA> NA not_TE_peak all_peaks NA
6015 <NA> NA not_TE_peak all_peaks NA
6016 L2 162 TE_peak all_peaks 1.0000000000
6017 <NA> NA not_TE_peak all_peaks NA
6018 L2 358 not_TE_peak all_peaks 0.3934065934
6019 L2 44 TE_peak all_peaks 0.6666666667
6020 <NA> NA not_TE_peak all_peaks NA
6021 L2 92 TE_peak all_peaks 0.5679012346
6022 Alu 88 not_TE_peak all_peaks 0.2913907285
6023 <NA> NA not_TE_peak all_peaks NA
6024 <NA> NA not_TE_peak all_peaks NA
6025 Simple_repeat 38 TE_peak all_peaks 1.0000000000
6026 Alu 34 not_TE_peak all_peaks 0.1192982456
6027 L2 128 not_TE_peak all_peaks 0.2361623616
6028 Simple_repeat 44 TE_peak all_peaks 1.0000000000
6029 Simple_repeat 38 TE_peak all_peaks 1.0000000000
6030 <NA> NA not_TE_peak all_peaks NA
6031 Simple_repeat 43 TE_peak all_peaks 1.0000000000
6032 <NA> NA not_TE_peak all_peaks NA
6033 <NA> NA not_TE_peak all_peaks NA
6034 MIR 56 TE_peak all_peaks 1.0000000000
6035 L2 32 TE_peak all_peaks 1.0000000000
6036 L2 137 not_TE_peak all_peaks 0.4521452145
6037 Simple_repeat 57 TE_peak all_peaks 1.0000000000
6038 Simple_repeat 37 TE_peak all_peaks 1.0000000000
6039 Simple_repeat 33 TE_peak all_peaks 1.0000000000
6040 <NA> NA not_TE_peak all_peaks NA
6041 MIR 154 TE_peak all_peaks 0.6637931034
6042 MIR 183 TE_peak all_peaks 1.0000000000
6043 hAT-Charlie 97 TE_peak all_peaks 0.6100628931
6044 Simple_repeat 48 TE_peak all_peaks 1.0000000000
6045 L1 170 not_TE_peak all_peaks 0.4521276596
6046 Alu 55 not_TE_peak all_peaks 0.1903114187
6047 ERV1 223 TE_peak all_peaks 1.0000000000
6048 Simple_repeat 17 not_TE_peak all_peaks 0.4722222222
6049 L2 308 TE_peak all_peaks 0.7877237852
6050 Alu 117 TE_peak all_peaks 1.0000000000
6051 Simple_repeat 29 TE_peak all_peaks 1.0000000000
6052 Alu 14 not_TE_peak all_peaks 0.0823529412
6053 ERVL-MaLR 403 TE_peak all_peaks 0.6936316695
6054 L2 139 not_TE_peak all_peaks 0.4498381877
6055 Alu 49 not_TE_peak all_peaks 0.1540880503
6056 L2 386 TE_peak all_peaks 0.5813253012
6057 ERVL 308 TE_peak all_peaks 0.7567567568
6058 hAT-Charlie 128 TE_peak all_peaks 1.0000000000
6059 Alu 111 not_TE_peak all_peaks 0.4252873563
6060 <NA> NA not_TE_peak all_peaks NA
6061 L1 324 not_TE_peak all_peaks 0.1443850267
6062 MIR 121 TE_peak all_peaks 0.9097744361
6063 <NA> NA not_TE_peak all_peaks NA
6064 <NA> NA not_TE_peak all_peaks NA
6065 Simple_repeat 38 TE_peak all_peaks 1.0000000000
6066 MIR 224 TE_peak all_peaks 1.0000000000
6067 <NA> NA not_TE_peak all_peaks NA
6068 MIR 70 TE_peak all_peaks 1.0000000000
6069 ERVL-MaLR 416 TE_peak all_peaks 1.0000000000
6070 <NA> NA not_TE_peak all_peaks NA
6071 <NA> NA not_TE_peak all_peaks NA
6072 <NA> NA not_TE_peak all_peaks NA
6073 <NA> NA not_TE_peak all_peaks NA
6074 <NA> NA not_TE_peak all_peaks NA
6075 <NA> NA not_TE_peak all_peaks NA
6076 <NA> NA not_TE_peak all_peaks NA
6077 MIR 30 not_TE_peak all_peaks 0.2380952381
6078 MIR 24 not_TE_peak all_peaks 0.0956175299
6079 MIR 108 TE_peak all_peaks 1.0000000000
6080 hAT-Charlie 153 TE_peak all_peaks 1.0000000000
6081 hAT-Charlie 15 not_TE_peak all_peaks 0.2884615385
6082 <NA> NA not_TE_peak all_peaks NA
6083 Simple_repeat 40 TE_peak all_peaks 1.0000000000
6084 Alu 9 not_TE_peak all_peaks 0.0292207792
6085 L2 328 TE_peak all_peaks 0.9010989011
6086 Simple_repeat 25 TE_peak all_peaks 1.0000000000
6087 MIR 226 TE_peak all_peaks 1.0000000000
6088 <NA> NA not_TE_peak all_peaks NA
6089 Simple_repeat 61 TE_peak all_peaks 1.0000000000
6090 Simple_repeat 73 TE_peak all_peaks 1.0000000000
6091 Simple_repeat 31 TE_peak all_peaks 1.0000000000
6092 Low_complexity 50 TE_peak all_peaks 1.0000000000
6093 <NA> NA not_TE_peak all_peaks NA
6094 Simple_repeat 30 TE_peak all_peaks 1.0000000000
6095 Low_complexity 54 TE_peak all_peaks 1.0000000000
6096 L2 47 TE_peak all_peaks 0.7704918033
6097 ERVL-MaLR 237 TE_peak all_peaks 1.0000000000
6098 hAT-Charlie 34 not_TE_peak all_peaks 0.2344827586
6099 <NA> NA not_TE_peak all_peaks NA
6100 <NA> NA not_TE_peak all_peaks NA
6101 L2 28 not_TE_peak all_peaks 0.0456026059
6102 Simple_repeat 48 TE_peak all_peaks 1.0000000000
6103 Simple_repeat 23 TE_peak all_peaks 1.0000000000
6104 Simple_repeat 52 TE_peak all_peaks 1.0000000000
6105 Simple_repeat 64 TE_peak all_peaks 1.0000000000
6106 Simple_repeat 42 TE_peak all_peaks 1.0000000000
6107 L2 74 TE_peak all_peaks 1.0000000000
6108 L2 232 not_TE_peak all_peaks 0.1354349095
6109 L2 345 not_TE_peak all_peaks 0.2014010508
6110 CR1 467 TE_peak all_peaks 0.6642958748
6111 MIR 229 TE_peak all_peaks 1.0000000000
6112 MIR 81 TE_peak all_peaks 1.0000000000
6113 Alu 3 not_TE_peak all_peaks 0.0097402597
6114 L2 327 TE_peak all_peaks 0.6553106212
6115 ERVL 329 TE_peak all_peaks 0.9293785311
6116 CR1 38 not_TE_peak all_peaks 0.2500000000
6117 CR1 18 not_TE_peak all_peaks 0.1034482759
6118 L2 112 TE_peak all_peaks 0.5463414634
6119 L2 89 not_TE_peak all_peaks 0.4734042553
6120 L2 50 not_TE_peak all_peaks 0.1010101010
6121 L2 122 TE_peak all_peaks 1.0000000000
6122 L2 157 TE_peak all_peaks 1.0000000000
6123 hAT-Charlie 141 TE_peak all_peaks 0.8650306748
6124 MIR 95 TE_peak all_peaks 1.0000000000
6125 Simple_repeat 33 TE_peak all_peaks 1.0000000000
6126 Simple_repeat 40 TE_peak all_peaks 1.0000000000
6127 MIR 46 TE_peak all_peaks 1.0000000000
6128 L2 199 TE_peak all_peaks 0.8223140496
6129 Simple_repeat 57 TE_peak all_peaks 1.0000000000
6130 <NA> NA not_TE_peak all_peaks NA
6131 <NA> NA not_TE_peak all_peaks NA
6132 L2 47 TE_peak all_peaks 1.0000000000
6133 <NA> NA not_TE_peak all_peaks NA
6134 <NA> NA not_TE_peak all_peaks NA
6135 MIR 58 not_TE_peak all_peaks 0.2885572139
6136 Simple_repeat 29 TE_peak all_peaks 1.0000000000
6137 L2 139 TE_peak all_peaks 1.0000000000
6138 Alu 126 not_TE_peak all_peaks 0.4390243902
6139 Alu 322 TE_peak all_peaks 0.8563829787
6140 MIR 111 TE_peak all_peaks 0.8161764706
6141 Alu 161 TE_peak all_peaks 0.5278688525
6142 Alu 88 TE_peak all_peaks 1.0000000000
6143 snRNA 114 TE_peak all_peaks 1.0000000000
6144 Alu 58 not_TE_peak all_peaks 0.4461538462
6145 L2 26 not_TE_peak all_peaks 0.0962962963
6146 Alu 61 not_TE_peak all_peaks 0.4552238806
6147 MIR 94 TE_peak all_peaks 1.0000000000
6148 L2 327 TE_peak all_peaks 0.7381489842
6149 Low_complexity 55 TE_peak all_peaks 1.0000000000
6150 Alu 126 TE_peak all_peaks 1.0000000000
6151 Simple_repeat 39 TE_peak all_peaks 1.0000000000
6152 L2 376 TE_peak all_peaks 1.0000000000
6153 Alu 163 TE_peak all_peaks 0.5361842105
6154 Alu 48 not_TE_peak all_peaks 0.1696113074
6155 Alu 150 TE_peak all_peaks 1.0000000000
6156 Alu 19 not_TE_peak all_peaks 0.0570570571
6157 Simple_repeat 56 TE_peak all_peaks 1.0000000000
6158 Simple_repeat 24 TE_peak all_peaks 1.0000000000
6159 Alu 68 not_TE_peak all_peaks 0.2222222222
6160 <NA> NA not_TE_peak all_peaks NA
6161 <NA> NA not_TE_peak all_peaks NA
6162 <NA> NA not_TE_peak all_peaks NA
6163 L2 198 not_TE_peak all_peaks 0.4551724138
6164 Alu 48 not_TE_peak all_peaks 0.1696113074
6165 Simple_repeat 52 TE_peak all_peaks 1.0000000000
6166 Low_complexity 31 TE_peak all_peaks 1.0000000000
6167 Alu 46 not_TE_peak all_peaks 0.4181818182
6168 Alu 162 TE_peak all_peaks 1.0000000000
6169 snRNA 95 TE_peak all_peaks 1.0000000000
6170 L2 222 TE_peak all_peaks 1.0000000000
6171 MIR 123 TE_peak all_peaks 1.0000000000
6172 Simple_repeat 28 TE_peak all_peaks 1.0000000000
6173 Low_complexity 36 TE_peak all_peaks 1.0000000000
6174 <NA> NA not_TE_peak all_peaks NA
6175 ERVL-MaLR 259 TE_peak all_peaks 1.0000000000
6176 Alu 11 not_TE_peak all_peaks 0.1157894737
6177 Alu 13 not_TE_peak all_peaks 0.0430463576
6178 Alu 146 TE_peak all_peaks 0.5000000000
6179 MIR 5 not_TE_peak all_peaks 0.0450450450
6180 Simple_repeat 48 TE_peak all_peaks 1.0000000000
6181 Alu 51 not_TE_peak all_peaks 0.4146341463
6182 SVA 329 not_TE_peak all_peaks 0.2250341997
6183 Alu 143 not_TE_peak all_peaks 0.4750830565
6184 MIR 88 TE_peak all_peaks 1.0000000000
6185 L2 113 TE_peak all_peaks 1.0000000000
6186 Alu 29 not_TE_peak all_peaks 0.0983050847
6187 L1 341 TE_peak all_peaks 1.0000000000
6188 L1 296 not_TE_peak all_peaks 0.4933333333
6189 <NA> NA not_TE_peak all_peaks NA
6190 Alu 154 TE_peak all_peaks 1.0000000000
6191 L2 109 TE_peak all_peaks 1.0000000000
6192 L2 22 not_TE_peak all_peaks 0.2115384615
6193 <NA> NA not_TE_peak all_peaks NA
6194 <NA> NA not_TE_peak all_peaks NA
6195 <NA> NA not_TE_peak all_peaks NA
6196 L2 106 TE_peak all_peaks 1.0000000000
6197 Alu 36 not_TE_peak all_peaks 0.1180327869
6198 ERVL 180 TE_peak all_peaks 1.0000000000
6199 ERVL 38 not_TE_peak all_peaks 0.2900763359
6200 Simple_repeat 50 TE_peak all_peaks 1.0000000000
6201 ERVL 504 TE_peak all_peaks 1.0000000000
6202 <NA> NA not_TE_peak all_peaks NA
6203 Alu 211 TE_peak all_peaks 0.7201365188
6204 Simple_repeat 39 TE_peak all_peaks 1.0000000000
6205 Simple_repeat 11 not_TE_peak all_peaks 0.3437500000
6206 L2 126 TE_peak all_peaks 1.0000000000
6207 L2 118 TE_peak all_peaks 1.0000000000
6208 Alu 260 TE_peak all_peaks 0.8934707904
6209 L2 138 TE_peak all_peaks 1.0000000000
6210 L2 32 not_TE_peak all_peaks 0.3440860215
6211 Alu 244 TE_peak all_peaks 0.8000000000
6212 Alu 46 not_TE_peak all_peaks 0.1543624161
6213 ERVL-MaLR 346 TE_peak all_peaks 0.7193347193
6214 Alu 281 TE_peak all_peaks 1.0000000000
6215 hAT-Charlie 114 TE_peak all_peaks 0.9047619048
6216 <NA> NA not_TE_peak all_peaks NA
6217 <NA> NA not_TE_peak all_peaks NA
6218 <NA> NA not_TE_peak all_peaks NA
6219 Alu 135 TE_peak all_peaks 0.8035714286
6220 ERVK 448 not_TE_peak all_peaks 0.4691099476
6221 Alu 35 not_TE_peak all_peaks 0.2777777778
6222 <NA> NA not_TE_peak all_peaks NA
6223 Alu 102 not_TE_peak all_peaks 0.4415584416
6224 L2 50 TE_peak all_peaks 1.0000000000
6225 MIR 8 not_TE_peak all_peaks 0.1012658228
6226 MIR 81 TE_peak all_peaks 1.0000000000
6227 MIR 195 TE_peak all_peaks 0.9112149533
6228 <NA> NA not_TE_peak all_peaks NA
6229 <NA> NA not_TE_peak all_peaks NA
6230 ERV1 472 not_TE_peak all_peaks 0.3264177040
6231 <NA> NA not_TE_peak all_peaks NA
6232 hAT-Charlie 46 TE_peak all_peaks 0.5054945055
6233 Alu 171 TE_peak all_peaks 1.0000000000
6234 <NA> NA not_TE_peak all_peaks NA
6235 Alu 52 TE_peak all_peaks 0.5000000000
6236 L1 142 TE_peak all_peaks 1.0000000000
6237 ERVL 483 TE_peak all_peaks 1.0000000000
6238 Alu 42 not_TE_peak all_peaks 0.1453287197
6239 Alu 127 TE_peak all_peaks 0.8698630137
6240 Alu 309 TE_peak all_peaks 1.0000000000
6241 Alu 115 TE_peak all_peaks 0.7142857143
6242 L1 192 TE_peak all_peaks 1.0000000000
6243 hAT-Charlie 49 TE_peak all_peaks 1.0000000000
6244 ERVL-MaLR 153 TE_peak all_peaks 0.9503105590
6245 MIR 46 TE_peak all_peaks 1.0000000000
6246 <NA> NA not_TE_peak all_peaks NA
6247 ERVL 320 TE_peak all_peaks 0.5643738977
6248 Alu 193 TE_peak all_peaks 0.6205787781
6249 L1 20 not_TE_peak all_peaks 0.1020408163
6250 Alu 301 TE_peak all_peaks 1.0000000000
6251 L1 123 TE_peak all_peaks 1.0000000000
6252 Alu 90 not_TE_peak all_peaks 0.2884615385
6253 Alu 52 not_TE_peak all_peaks 0.2708333333
6254 Alu 208 TE_peak all_peaks 1.0000000000
6255 Alu 83 not_TE_peak all_peaks 0.2785234899
6256 <NA> NA not_TE_peak all_peaks NA
6257 Alu 52 not_TE_peak all_peaks 0.1444444444
6258 hAT-Charlie 123 TE_peak all_peaks 1.0000000000
6259 ERVL-MaLR 494 TE_peak all_peaks 0.8758865248
6260 MIR 41 not_TE_peak all_peaks 0.2113402062
6261 MIR 167 TE_peak all_peaks 1.0000000000
6262 L2 86 TE_peak all_peaks 1.0000000000
6263 Simple_repeat 43 TE_peak all_peaks 1.0000000000
6264 ERV1 234 TE_peak all_peaks 0.7090909091
6265 Alu 105 TE_peak all_peaks 1.0000000000
6266 Alu 62 TE_peak all_peaks 0.5000000000
6267 <NA> NA not_TE_peak all_peaks NA
6268 Alu 11 not_TE_peak all_peaks 0.0873015873
6269 Alu 50 not_TE_peak all_peaks 0.1677852349
6270 L2 460 not_TE_peak all_peaks 0.4496578690
6271 L1 77 not_TE_peak all_peaks 0.1540000000
6272 Alu 240 TE_peak all_peaks 0.7476635514
6273 MIR 98 TE_peak all_peaks 0.5185185185
6274 Low_complexity 98 TE_peak all_peaks 1.0000000000
6275 MIR 139 TE_peak all_peaks 0.8797468354
6276 ERV1 1034 TE_peak all_peaks 0.7343750000
6277 <NA> NA not_TE_peak all_peaks NA
6278 L1 67 not_TE_peak all_peaks 0.1529680365
6279 L2 62 TE_peak all_peaks 1.0000000000
6280 <NA> NA not_TE_peak all_peaks NA
6281 L1 28 not_TE_peak all_peaks 0.0242005186
6282 hAT-Charlie 534 TE_peak all_peaks 1.0000000000
6283 L1 241 not_TE_peak all_peaks 0.4829659319
6284 <NA> NA not_TE_peak all_peaks NA
6285 <NA> NA not_TE_peak all_peaks NA
6286 MIR 43 TE_peak all_peaks 1.0000000000
6287 L2 127 TE_peak all_peaks 1.0000000000
6288 L2 96 TE_peak all_peaks 1.0000000000
6289 Alu 116 TE_peak all_peaks 1.0000000000
6290 Alu 33 not_TE_peak all_peaks 0.3548387097
6291 L2 134 TE_peak all_peaks 1.0000000000
6292 L2 342 TE_peak all_peaks 0.9688385269
6293 L2 206 TE_peak all_peaks 0.6261398176
6294 MIR 242 TE_peak all_peaks 1.0000000000
6295 L2 89 not_TE_peak all_peaks 0.4218009479
6296 MIR 16 not_TE_peak all_peaks 0.0717488789
6297 Simple_repeat 29 TE_peak all_peaks 0.8787878788
6298 L2 45 not_TE_peak all_peaks 0.1982378855
6299 <NA> NA not_TE_peak all_peaks NA
6300 <NA> NA not_TE_peak all_peaks NA
6301 ERVL-MaLR 9 not_TE_peak all_peaks 0.0249307479
6302 CR1 154 TE_peak all_peaks 1.0000000000
6303 Alu 221 TE_peak all_peaks 0.7129032258
6304 L2 408 not_TE_peak all_peaks 0.3136049193
6305 Alu 125 not_TE_peak all_peaks 0.4562043796
6306 Simple_repeat 35 TE_peak all_peaks 1.0000000000
6307 L2 106 TE_peak all_peaks 1.0000000000
6308 ERVL 302 TE_peak all_peaks 0.6344537815
6309 <NA> NA not_TE_peak all_peaks NA
6310 Alu 75 not_TE_peak all_peaks 0.2777777778
6311 L1 248 TE_peak all_peaks 1.0000000000
6312 L1 27 TE_peak all_peaks 1.0000000000
6313 L1 142 not_TE_peak all_peaks 0.4863013699
6314 Low_complexity 43 TE_peak all_peaks 1.0000000000
6315 5S-Deu-L2 88 not_TE_peak all_peaks 0.3437500000
6316 Gypsy 659 TE_peak all_peaks 0.6772867420
6317 L2 123 TE_peak all_peaks 1.0000000000
6318 Simple_repeat 67 TE_peak all_peaks 1.0000000000
6319 Simple_repeat 122 TE_peak all_peaks 1.0000000000
6320 MIR 130 TE_peak all_peaks 1.0000000000
6321 Low_complexity 63 TE_peak all_peaks 1.0000000000
6322 Low_complexity 36 TE_peak all_peaks 1.0000000000
6323 Simple_repeat 25 TE_peak all_peaks 0.6410256410
6324 Simple_repeat 64 TE_peak all_peaks 1.0000000000
6325 <NA> NA not_TE_peak all_peaks NA
6326 CR1 6 not_TE_peak all_peaks 0.0625000000
6327 MIR 75 TE_peak all_peaks 0.6944444444
6328 MIR 118 TE_peak all_peaks 1.0000000000
6329 L2 64 not_TE_peak all_peaks 0.1295546559
6330 MIR 38 TE_peak all_peaks 1.0000000000
6331 Simple_repeat 94 TE_peak all_peaks 1.0000000000
6332 Simple_repeat 37 TE_peak all_peaks 1.0000000000
6333 L2 60 TE_peak all_peaks 1.0000000000
6334 <NA> NA not_TE_peak all_peaks NA
6335 Alu 258 TE_peak all_peaks 0.8571428571
6336 ERVL 360 TE_peak all_peaks 1.0000000000
6337 Simple_repeat 42 TE_peak all_peaks 1.0000000000
6338 ERVL 13 TE_peak all_peaks 1.0000000000
6339 MIR 51 not_TE_peak all_peaks 0.2217391304
6340 Alu 41 not_TE_peak all_peaks 0.1423611111
6341 L2 90 TE_peak all_peaks 1.0000000000
6342 Alu 167 TE_peak all_peaks 0.5369774920
6343 Alu 97 not_TE_peak all_peaks 0.3321917808
6344 Simple_repeat 18 TE_peak all_peaks 1.0000000000
6345 ERV1 182 not_TE_peak all_peaks 0.4428223844
6346 ERVL-MaLR 357 TE_peak all_peaks 1.0000000000
6347 ERV1 209 TE_peak all_peaks 0.8893617021
6348 Alu 178 TE_peak all_peaks 0.6223776224
6349 ERV1 33 TE_peak all_peaks 1.0000000000
6350 MIR 159 TE_peak all_peaks 1.0000000000
6351 MIR 151 TE_peak all_peaks 1.0000000000
6352 Simple_repeat 40 TE_peak all_peaks 1.0000000000
6353 L2 299 TE_peak all_peaks 0.7475000000
6354 Alu 35 not_TE_peak all_peaks 0.1151315789
6355 <NA> NA not_TE_peak all_peaks NA
6356 <NA> NA not_TE_peak all_peaks NA
6357 L2 301 TE_peak all_peaks 0.7818181818
6358 <NA> NA not_TE_peak all_peaks NA
6359 <NA> NA not_TE_peak all_peaks NA
6360 L2 157 TE_peak all_peaks 1.0000000000
6361 Simple_repeat 35 TE_peak all_peaks 1.0000000000
6362 ERVL 76 not_TE_peak all_peaks 0.1909547739
6363 Alu 239 TE_peak all_peaks 1.0000000000
6364 ERVL 145 TE_peak all_peaks 0.7923497268
6365 Alu 97 not_TE_peak all_peaks 0.3415492958
6366 ERV1 44 TE_peak all_peaks 1.0000000000
6367 ERV1 354 TE_peak all_peaks 0.9030612245
6368 Alu 241 TE_peak all_peaks 0.8033333333
6369 hAT-Tip100 47 TE_peak all_peaks 1.0000000000
6370 L2 202 TE_peak all_peaks 1.0000000000
6371 Simple_repeat 45 TE_peak all_peaks 1.0000000000
6372 Alu 252 TE_peak all_peaks 0.8025477707
6373 L2 184 TE_peak all_peaks 1.0000000000
6374 Alu 150 not_TE_peak all_peaks 0.4901960784
6375 CR1 164 TE_peak all_peaks 0.6456692913
6376 ERVL-MaLR 131 TE_peak all_peaks 0.8911564626
6377 Alu 76 not_TE_peak all_peaks 0.2467532468
6378 ERVL-MaLR 271 TE_peak all_peaks 1.0000000000
6379 Alu 66 not_TE_peak all_peaks 0.2149837134
6380 <NA> NA not_TE_peak all_peaks NA
6381 <NA> NA not_TE_peak all_peaks NA
6382 Simple_repeat 29 TE_peak all_peaks 1.0000000000
6383 Alu 334 TE_peak all_peaks 1.0000000000
6384 <NA> NA not_TE_peak all_peaks NA
6385 L2 357 TE_peak all_peaks 1.0000000000
6386 MIR 194 TE_peak all_peaks 1.0000000000
6387 <NA> NA not_TE_peak all_peaks NA
6388 Simple_repeat 10 not_TE_peak all_peaks 0.2941176471
6389 Simple_repeat 15 TE_peak all_peaks 1.0000000000
6390 MIR 91 TE_peak all_peaks 0.6546762590
6391 Simple_repeat 68 TE_peak all_peaks 1.0000000000
6392 Simple_repeat 48 TE_peak all_peaks 1.0000000000
6393 Simple_repeat 43 TE_peak all_peaks 1.0000000000
6394 MIR 168 TE_peak all_peaks 0.7400881057
6395 <NA> NA not_TE_peak all_peaks NA
6396 <NA> NA not_TE_peak all_peaks NA
6397 Simple_repeat 39 TE_peak all_peaks 1.0000000000
6398 Simple_repeat 34 TE_peak all_peaks 1.0000000000
6399 Simple_repeat 55 TE_peak all_peaks 1.0000000000
6400 Simple_repeat 5 not_TE_peak all_peaks 0.1785714286
6401 Alu 65 not_TE_peak all_peaks 0.2188552189
6402 CR1 87 TE_peak all_peaks 1.0000000000
6403 <NA> NA not_TE_peak all_peaks NA
6404 Simple_repeat 85 TE_peak all_peaks 1.0000000000
6405 hAT-Tip100 40 not_TE_peak all_peaks 0.2580645161
6406 L2 86 TE_peak all_peaks 0.8113207547
6407 Simple_repeat 22 TE_peak all_peaks 1.0000000000
6408 Simple_repeat 32 TE_peak all_peaks 1.0000000000
6409 Low_complexity 68 TE_peak all_peaks 1.0000000000
6410 <NA> NA not_TE_peak all_peaks NA
6411 Simple_repeat 5 not_TE_peak all_peaks 0.1428571429
6412 CR1 33 not_TE_peak all_peaks 0.3707865169
6413 MIR 224 TE_peak all_peaks 1.0000000000
6414 L2 11 not_TE_peak all_peaks 0.1111111111
6415 MIR 190 TE_peak all_peaks 0.8333333333
6416 L2 47 TE_peak all_peaks 1.0000000000
6417 Simple_repeat 33 TE_peak all_peaks 1.0000000000
6418 L2 20 not_TE_peak all_peaks 0.2352941176
6419 <NA> NA not_TE_peak all_peaks NA
6420 MIR 15 not_TE_peak all_peaks 0.2205882353
6421 <NA> NA not_TE_peak all_peaks NA
6422 MIR 150 TE_peak all_peaks 1.0000000000
6423 MIR 151 TE_peak all_peaks 1.0000000000
6424 Simple_repeat 25 TE_peak all_peaks 1.0000000000
6425 Low_complexity 43 TE_peak all_peaks 1.0000000000
6426 <NA> NA not_TE_peak all_peaks NA
6427 <NA> NA not_TE_peak all_peaks NA
6428 <NA> NA not_TE_peak all_peaks NA
6429 L1 604 TE_peak all_peaks 0.8042609854
6430 Simple_repeat 44 TE_peak all_peaks 1.0000000000
6431 Simple_repeat 37 TE_peak all_peaks 1.0000000000
6432 L2 77 TE_peak all_peaks 0.6814159292
6433 Simple_repeat 25 TE_peak all_peaks 1.0000000000
6434 Simple_repeat 2 not_TE_peak all_peaks 0.0500000000
6435 <NA> NA not_TE_peak all_peaks NA
6436 MIR 124 TE_peak all_peaks 0.8322147651
6437 MIR 201 TE_peak all_peaks 1.0000000000
6438 ERVK 116 not_TE_peak all_peaks 0.1331802526
6439 hAT-Tip100? 120 TE_peak all_peaks 1.0000000000
6440 MIR 82 TE_peak all_peaks 0.7522935780
6441 MIR 138 TE_peak all_peaks 0.8263473054
6442 <NA> NA not_TE_peak all_peaks NA
6443 <NA> NA not_TE_peak all_peaks NA
6444 L1 61 not_TE_peak all_peaks 0.0106998772
6445 Simple_repeat 41 TE_peak all_peaks 1.0000000000
6446 Low_complexity 14 TE_peak all_peaks 1.0000000000
6447 Simple_repeat 32 TE_peak all_peaks 1.0000000000
6448 Alu 113 not_TE_peak all_peaks 0.3754152824
6449 L2 67 TE_peak all_peaks 1.0000000000
6450 MIR 11 not_TE_peak all_peaks 0.0544554455
6451 L2 92 TE_peak all_peaks 1.0000000000
6452 Simple_repeat 76 TE_peak all_peaks 1.0000000000
6453 L2 159 not_TE_peak all_peaks 0.2236286920
6454 <NA> NA not_TE_peak all_peaks NA
6455 MIR 32 not_TE_peak all_peaks 0.1361702128
6456 L2 214 TE_peak all_peaks 0.9224137931
6457 <NA> NA not_TE_peak all_peaks NA
6458 <NA> NA not_TE_peak all_peaks NA
6459 MIR 201 TE_peak all_peaks 1.0000000000
6460 MIR 37 not_TE_peak all_peaks 0.2067039106
6461 Simple_repeat 47 TE_peak all_peaks 1.0000000000
6462 <NA> NA not_TE_peak all_peaks NA
6463 L2 169 TE_peak all_peaks 0.8407960199
6464 Alu 116 not_TE_peak all_peaks 0.4410646388
6465 L2 351 TE_peak all_peaks 1.0000000000
6466 Simple_repeat 38 TE_peak all_peaks 1.0000000000
6467 Simple_repeat 1 not_TE_peak all_peaks 0.0161290323
6468 hAT-Charlie 71 not_TE_peak all_peaks 0.3127753304
6469 MIR 105 TE_peak all_peaks 1.0000000000
6470 Simple_repeat 27 TE_peak all_peaks 1.0000000000
6471 Simple_repeat 24 TE_peak all_peaks 1.0000000000
6472 Simple_repeat 33 not_TE_peak all_peaks 0.3928571429
6473 Simple_repeat 81 TE_peak all_peaks 1.0000000000
6474 MIR 125 TE_peak all_peaks 0.8680555556
6475 <NA> NA not_TE_peak all_peaks NA
6476 MIR 76 TE_peak all_peaks 0.5000000000
6477 Simple_repeat 36 TE_peak all_peaks 1.0000000000
6478 Simple_repeat 27 TE_peak all_peaks 1.0000000000
6479 <NA> NA not_TE_peak all_peaks NA
6480 <NA> NA not_TE_peak all_peaks NA
6481 L2 194 TE_peak all_peaks 0.6666666667
6482 L2 6 not_TE_peak all_peaks 0.0052219321
6483 Low_complexity 96 TE_peak all_peaks 1.0000000000
6484 Simple_repeat 17 TE_peak all_peaks 1.0000000000
6485 MIR 104 not_TE_peak all_peaks 0.4837209302
6486 Simple_repeat 12 not_TE_peak all_peaks 0.2500000000
6487 Low_complexity 10 not_TE_peak all_peaks 0.1265822785
6488 Simple_repeat 123 TE_peak all_peaks 1.0000000000
6489 Low_complexity 33 not_TE_peak all_peaks 0.2171052632
6490 MIR 12 not_TE_peak all_peaks 0.0875912409
6491 L2 133 TE_peak all_peaks 0.6751269036
6492 L2 53 not_TE_peak all_peaks 0.3785714286
6493 L2 45 TE_peak all_peaks 0.6818181818
6494 ERVL 71 not_TE_peak all_peaks 0.4034090909
6495 L2 183 not_TE_peak all_peaks 0.4507389163
6496 Alu 259 TE_peak all_peaks 0.8633333333
6497 MIR 202 TE_peak all_peaks 1.0000000000
6498 L2 63 not_TE_peak all_peaks 0.4344827586
6499 TcMar-Tigger 112 TE_peak all_peaks 1.0000000000
6500 Simple_repeat 34 TE_peak all_peaks 1.0000000000
6501 MIR 161 TE_peak all_peaks 1.0000000000
6502 hAT-Tip100 31 TE_peak all_peaks 0.6595744681
6503 L2 49 not_TE_peak all_peaks 0.2016460905
6504 hAT-Charlie 84 not_TE_peak all_peaks 0.4000000000
6505 Gypsy 80 not_TE_peak all_peaks 0.2857142857
6506 Gypsy 218 TE_peak all_peaks 1.0000000000
6507 Low_complexity 34 TE_peak all_peaks 1.0000000000
6508 <NA> NA not_TE_peak all_peaks NA
6509 MIR 196 TE_peak all_peaks 1.0000000000
6510 MIR 130 TE_peak all_peaks 1.0000000000
6511 MIR 28 not_TE_peak all_peaks 0.2074074074
6512 MIR 87 not_TE_peak all_peaks 0.4603174603
6513 MIR 53 not_TE_peak all_peaks 0.2078431373
6514 ERV1 194 not_TE_peak all_peaks 0.4409090909
6515 Simple_repeat 22 TE_peak all_peaks 0.6875000000
6516 <NA> NA not_TE_peak all_peaks NA
6517 MIR 153 TE_peak all_peaks 0.8547486034
6518 L2 22 TE_peak all_peaks 1.0000000000
6519 MIR 74 TE_peak all_peaks 1.0000000000
6520 MIR 100 TE_peak all_peaks 0.7299270073
6521 MIR 67 TE_peak all_peaks 1.0000000000
6522 hAT-Tip100 66 TE_peak all_peaks 1.0000000000
6523 MIR 128 not_TE_peak all_peaks 0.4980544747
6524 <NA> NA not_TE_peak all_peaks NA
6525 <NA> NA not_TE_peak all_peaks NA
6526 CR1 53 TE_peak all_peaks 1.0000000000
6527 <NA> NA not_TE_peak all_peaks NA
6528 Simple_repeat 52 TE_peak all_peaks 1.0000000000
6529 <NA> NA not_TE_peak all_peaks NA
6530 MIR 88 TE_peak all_peaks 0.6330935252
6531 <NA> NA not_TE_peak all_peaks NA
6532 MIR 143 TE_peak all_peaks 1.0000000000
6533 <NA> NA not_TE_peak all_peaks NA
6534 L2 145 not_TE_peak all_peaks 0.1629213483
6535 L2 183 not_TE_peak all_peaks 0.2056179775
6536 L2 99 TE_peak all_peaks 1.0000000000
6537 TcMar-Tigger 88 not_TE_peak all_peaks 0.2983050847
6538 MIR 178 TE_peak all_peaks 1.0000000000
6539 MIR 259 TE_peak all_peaks 1.0000000000
6540 <NA> NA not_TE_peak all_peaks NA
6541 <NA> NA not_TE_peak all_peaks NA
6542 <NA> NA not_TE_peak all_peaks NA
6543 MIR 31 not_TE_peak all_peaks 0.1722222222
6544 Alu 304 TE_peak all_peaks 1.0000000000
6545 L2 243 TE_peak all_peaks 1.0000000000
6546 L2 68 TE_peak all_peaks 1.0000000000
6547 hAT-Charlie 108 TE_peak all_peaks 0.5373134328
6548 MIR 69 not_TE_peak all_peaks 0.3150684932
6549 MIR 94 TE_peak all_peaks 0.6527777778
6550 MIR 63 TE_peak all_peaks 1.0000000000
6551 L2 2 not_TE_peak all_peaks 0.0434782609
6552 ERVL 4 not_TE_peak all_peaks 0.0144404332
6553 L2 227 TE_peak all_peaks 0.8376383764
6554 L2 139 TE_peak all_peaks 0.5582329317
6555 L2 49 TE_peak all_peaks 1.0000000000
6556 CR1 67 TE_peak all_peaks 1.0000000000
6557 L2 24 not_TE_peak all_peaks 0.0633245383
6558 L2 143 TE_peak all_peaks 1.0000000000
6559 Simple_repeat 67 TE_peak all_peaks 1.0000000000
6560 Simple_repeat 40 TE_peak all_peaks 1.0000000000
6561 Simple_repeat 49 TE_peak all_peaks 1.0000000000
6562 Simple_repeat 52 TE_peak all_peaks 1.0000000000
6563 TcMar-Mariner 6 not_TE_peak all_peaks 0.0882352941
6564 Alu 46 not_TE_peak all_peaks 0.1479099678
6565 L2 139 TE_peak all_peaks 1.0000000000
6566 tRNA-RTE 72 TE_peak all_peaks 1.0000000000
6567 RTE-BovB 51 TE_peak all_peaks 1.0000000000
6568 <NA> NA not_TE_peak all_peaks NA
6569 MIR 34 not_TE_peak all_peaks 0.2656250000
6570 CR1 119 TE_peak all_peaks 0.5085470085
6571 L2 139 TE_peak all_peaks 1.0000000000
6572 L2 35 TE_peak all_peaks 0.5468750000
6573 Simple_repeat 17 TE_peak all_peaks 1.0000000000
6574 MIR 28 not_TE_peak all_peaks 0.2314049587
6575 MIR 67 not_TE_peak all_peaks 0.3850574713
6576 Simple_repeat 21 TE_peak all_peaks 1.0000000000
6577 L2 164 TE_peak all_peaks 1.0000000000
6578 MIR 40 not_TE_peak all_peaks 0.1860465116
6579 CR1 75 TE_peak all_peaks 1.0000000000
6580 L2 136 TE_peak all_peaks 0.7157894737
6581 <NA> NA not_TE_peak all_peaks NA
6582 <NA> NA not_TE_peak all_peaks NA
6583 MIR 120 TE_peak all_peaks 0.6185567010
6584 L2 56 TE_peak all_peaks 0.5773195876
6585 <NA> NA not_TE_peak all_peaks NA
6586 MIR 109 TE_peak all_peaks 0.7218543046
6587 hAT-Charlie 171 TE_peak all_peaks 1.0000000000
6588 CR1 38 TE_peak all_peaks 1.0000000000
6589 <NA> NA not_TE_peak all_peaks NA
6590 L1 390 not_TE_peak all_peaks 0.2769886364
6591 L1 72 not_TE_peak all_peaks 0.1994459834
6592 hAT-Charlie 111 TE_peak all_peaks 0.6491228070
6593 L2 83 TE_peak all_peaks 1.0000000000
6594 L1 36 not_TE_peak all_peaks 0.1338289963
6595 L1 37 TE_peak all_peaks 1.0000000000
6596 ERVL-MaLR 52 TE_peak all_peaks 1.0000000000
6597 Simple_repeat 689 TE_peak all_peaks 0.9285714286
6598 MIR 3 not_TE_peak all_peaks 0.0202702703
6599 <NA> NA not_TE_peak all_peaks NA
6600 MIR 102 not_TE_peak all_peaks 0.4358974359
6601 TcMar-Tigger 26 not_TE_peak all_peaks 0.0577777778
6602 L1 328 TE_peak all_peaks 1.0000000000
6603 L1 79 TE_peak all_peaks 1.0000000000
6604 L1 38 TE_peak all_peaks 1.0000000000
6605 L1 249 TE_peak all_peaks 0.5030303030
6606 Simple_repeat 49 TE_peak all_peaks 1.0000000000
6607 MIR 84 TE_peak all_peaks 1.0000000000
6608 <NA> NA not_TE_peak all_peaks NA
6609 hAT-Charlie 29 not_TE_peak all_peaks 0.0650224215
6610 Gypsy 498 TE_peak all_peaks 0.8355704698
6611 MIR 13 not_TE_peak all_peaks 0.0764705882
6612 MIR 162 TE_peak all_peaks 0.7363636364
6613 Simple_repeat 109 not_TE_peak all_peaks 0.4022140221
6614 Simple_repeat 18 TE_peak all_peaks 1.0000000000
6615 L2 406 TE_peak all_peaks 0.5205128205
6616 hAT-Charlie 167 TE_peak all_peaks 0.8652849741
6617 MIR 68 not_TE_peak all_peaks 0.3469387755
6618 L2 314 TE_peak all_peaks 1.0000000000
6619 <NA> NA not_TE_peak all_peaks NA
6620 MIR 30 not_TE_peak all_peaks 0.1260504202
6621 MIR 132 TE_peak all_peaks 0.5322580645
6622 RTE-X 184 TE_peak all_peaks 1.0000000000
6623 Simple_repeat 41 TE_peak all_peaks 0.7735849057
6624 MIR 162 TE_peak all_peaks 0.9418604651
6625 <NA> NA not_TE_peak all_peaks NA
6626 MIR 45 not_TE_peak all_peaks 0.4017857143
6627 MIR 112 TE_peak all_peaks 1.0000000000
6628 L2 74 TE_peak all_peaks 0.6666666667
6629 L2 174 TE_peak all_peaks 0.6083916084
6630 L2 98 TE_peak all_peaks 1.0000000000
6631 MIR 43 not_TE_peak all_peaks 0.1692913386
6632 L2 153 TE_peak all_peaks 0.6219512195
6633 hAT-Charlie 113 TE_peak all_peaks 1.0000000000
6634 MIR 113 TE_peak all_peaks 1.0000000000
6635 Simple_repeat 27 TE_peak all_peaks 1.0000000000
6636 MIR 194 TE_peak all_peaks 1.0000000000
6637 TcMar-Tigger 67 TE_peak all_peaks 0.7362637363
6638 <NA> NA not_TE_peak all_peaks NA
6639 <NA> NA not_TE_peak all_peaks NA
6640 MIR 16 not_TE_peak all_peaks 0.0747663551
6641 MIR 155 TE_peak all_peaks 1.0000000000
6642 <NA> NA not_TE_peak all_peaks NA
6643 <NA> NA not_TE_peak all_peaks NA
6644 <NA> NA not_TE_peak all_peaks NA
6645 L2 285 not_TE_peak all_peaks 0.2484742807
6646 <NA> NA not_TE_peak all_peaks NA
6647 ERVL-MaLR 282 TE_peak all_peaks 0.5412667946
6648 MIR 93 TE_peak all_peaks 0.8532110092
6649 MIR 52 TE_peak all_peaks 1.0000000000
6650 L2 168 TE_peak all_peaks 1.0000000000
6651 Simple_repeat 19 TE_peak all_peaks 1.0000000000
6652 MIR 11 not_TE_peak all_peaks 0.0523809524
6653 L2 100 TE_peak all_peaks 0.7042253521
6654 Alu 300 TE_peak all_peaks 1.0000000000
6655 L2 66 TE_peak all_peaks 1.0000000000
6656 MIR 184 TE_peak all_peaks 0.8803827751
6657 Simple_repeat 45 TE_peak all_peaks 1.0000000000
6658 Low_complexity 21 TE_peak all_peaks 1.0000000000
6659 <NA> NA not_TE_peak all_peaks NA
6660 L2 188 TE_peak all_peaks 0.6084142395
6661 MIR 139 TE_peak all_peaks 0.6233183857
6662 MIR 73 TE_peak all_peaks 1.0000000000
6663 MIR 25 not_TE_peak all_peaks 0.0968992248
6664 MIR 45 not_TE_peak all_peaks 0.4591836735
6665 MIR 136 TE_peak all_peaks 1.0000000000
6666 Simple_repeat 45 TE_peak all_peaks 1.0000000000
6667 MIR 202 TE_peak all_peaks 1.0000000000
6668 L2 163 TE_peak all_peaks 0.6197718631
6669 MIR 74 not_TE_peak all_peaks 0.3474178404
6670 Simple_repeat 25 TE_peak all_peaks 0.5000000000
6671 Simple_repeat 35 TE_peak all_peaks 1.0000000000
6672 MIR 86 TE_peak all_peaks 1.0000000000
6673 MIR 64 not_TE_peak all_peaks 0.3926380368
6674 MIR 73 not_TE_peak all_peaks 0.3041666667
6675 L2 113 TE_peak all_peaks 1.0000000000
6676 MIR 128 TE_peak all_peaks 1.0000000000
6677 Simple_repeat 197 not_TE_peak all_peaks 0.4436936937
6678 ERVL-MaLR 283 TE_peak all_peaks 0.6885644769
6679 Simple_repeat 29 TE_peak all_peaks 1.0000000000
6680 <NA> NA not_TE_peak all_peaks NA
6681 <NA> NA not_TE_peak all_peaks NA
6682 MIR 197 TE_peak all_peaks 1.0000000000
6683 MIR 60 not_TE_peak all_peaks 0.2586206897
6684 Simple_repeat 45 TE_peak all_peaks 1.0000000000
6685 CR1 317 TE_peak all_peaks 0.9378698225
6686 CR1 148 not_TE_peak all_peaks 0.2610229277
6687 L1 25 not_TE_peak all_peaks 0.0889679715
6688 MIR 115 TE_peak all_peaks 1.0000000000
6689 <NA> NA not_TE_peak all_peaks NA
6690 Alu 84 not_TE_peak all_peaks 0.2763157895
6691 L2 109 TE_peak all_peaks 1.0000000000
6692 MIR 103 TE_peak all_peaks 0.5228426396
6693 L1 630 TE_peak all_peaks 0.8689655172
6694 <NA> NA not_TE_peak all_peaks NA
6695 Alu 235 TE_peak all_peaks 1.0000000000
6696 <NA> NA not_TE_peak all_peaks NA
6697 Simple_repeat 21 TE_peak all_peaks 1.0000000000
6698 <NA> NA not_TE_peak all_peaks NA
6699 <NA> NA not_TE_peak all_peaks NA
6700 ERV1 397 TE_peak all_peaks 0.6572847682
6701 L1 67 not_TE_peak all_peaks 0.1037151703
6702 TcMar-Tigger 17 not_TE_peak all_peaks 0.0407673861
6703 ERV1 398 TE_peak all_peaks 1.0000000000
6704 ERV1 23 not_TE_peak all_peaks 0.3965517241
6705 ERVL-MaLR 90 TE_peak all_peaks 1.0000000000
6706 Alu 184 TE_peak all_peaks 1.0000000000
6707 ERVL-MaLR 241 TE_peak all_peaks 1.0000000000
6708 Alu 253 TE_peak all_peaks 0.8518518519
6709 Simple_repeat 26 TE_peak all_peaks 1.0000000000
6710 Simple_repeat 37 TE_peak all_peaks 1.0000000000
6711 Simple_repeat 26 TE_peak all_peaks 1.0000000000
6712 Simple_repeat 52 TE_peak all_peaks 1.0000000000
6713 Low_complexity 134 TE_peak all_peaks 1.0000000000
6714 <NA> NA not_TE_peak all_peaks NA
6715 Low_complexity 46 TE_peak all_peaks 1.0000000000
6716 ERVL-MaLR 326 TE_peak all_peaks 0.7652582160
6717 L1 236 TE_peak all_peaks 0.7763157895
6718 L1 446 not_TE_peak all_peaks 0.3776460627
6719 Simple_repeat 22 TE_peak all_peaks 1.0000000000
6720 Simple_repeat 16 not_TE_peak all_peaks 0.4705882353
6721 <NA> NA not_TE_peak all_peaks NA
6722 L2 64 not_TE_peak all_peaks 0.0726447219
6723 Simple_repeat 40 TE_peak all_peaks 1.0000000000
6724 hAT-Charlie 219 TE_peak all_peaks 1.0000000000
6725 L2 86 not_TE_peak all_peaks 0.3644067797
6726 L2 44 not_TE_peak all_peaks 0.0866141732
6727 Simple_repeat 35 TE_peak all_peaks 1.0000000000
6728 hAT-Charlie 110 TE_peak all_peaks 0.8593750000
6729 Alu 104 TE_peak all_peaks 1.0000000000
6730 Alu 164 TE_peak all_peaks 1.0000000000
6731 MIR 56 TE_peak all_peaks 0.8888888889
6732 Alu 141 TE_peak all_peaks 1.0000000000
6733 MIR 48 not_TE_peak all_peaks 0.3333333333
6734 Alu 26 not_TE_peak all_peaks 0.0905923345
6735 L2 185 TE_peak all_peaks 1.0000000000
6736 TcMar-Tigger 278 TE_peak all_peaks 0.6666666667
6737 <NA> NA not_TE_peak all_peaks NA
6738 Alu 53 not_TE_peak all_peaks 0.1749174917
6739 L2 15 not_TE_peak all_peaks 0.0837988827
6740 Alu 132 TE_peak all_peaks 1.0000000000
6741 L2 228 TE_peak all_peaks 1.0000000000
6742 MIR 127 TE_peak all_peaks 1.0000000000
6743 MIR 22 not_TE_peak all_peaks 0.1078431373
6744 L2 464 TE_peak all_peaks 0.9978494624
6745 CR1 76 TE_peak all_peaks 0.8260869565
6746 Simple_repeat 103 TE_peak all_peaks 1.0000000000
6747 hAT-Charlie 4 not_TE_peak all_peaks 0.0444444444
6748 Alu 221 TE_peak all_peaks 0.6696969697
6749 L1 111 TE_peak all_peaks 1.0000000000
6750 MIR 243 TE_peak all_peaks 1.0000000000
6751 hAT-Charlie 142 TE_peak all_peaks 1.0000000000
6752 <NA> NA not_TE_peak all_peaks NA
6753 <NA> NA not_TE_peak all_peaks NA
6754 MIR 101 not_TE_peak all_peaks 0.3914728682
6755 <NA> NA not_TE_peak all_peaks NA
6756 <NA> NA not_TE_peak all_peaks NA
6757 Alu 226 TE_peak all_peaks 0.7361563518
6758 Alu 164 TE_peak all_peaks 0.5503355705
6759 <NA> NA not_TE_peak all_peaks NA
6760 MIR 67 TE_peak all_peaks 0.6090909091
6761 Alu 129 TE_peak all_peaks 1.0000000000
6762 ERVL-MaLR 299 TE_peak all_peaks 0.8794117647
6763 Low_complexity 58 TE_peak all_peaks 1.0000000000
6764 Simple_repeat 75 TE_peak all_peaks 1.0000000000
6765 L2 25 not_TE_peak all_peaks 0.0868055556
6766 L2 236 TE_peak all_peaks 1.0000000000
6767 Alu 141 TE_peak all_peaks 0.8150289017
6768 Simple_repeat 40 TE_peak all_peaks 1.0000000000
6769 Simple_repeat 10 TE_peak all_peaks 0.5263157895
6770 Alu 143 TE_peak all_peaks 0.5088967972
6771 ERV1 481 TE_peak all_peaks 0.8825688073
6772 Simple_repeat 19 TE_peak all_peaks 1.0000000000
6773 Simple_repeat 42 TE_peak all_peaks 1.0000000000
6774 hAT-Charlie 114 TE_peak all_peaks 1.0000000000
6775 Alu 64 not_TE_peak all_peaks 0.2253521127
6776 Simple_repeat 35 TE_peak all_peaks 1.0000000000
6777 MIR 200 TE_peak all_peaks 1.0000000000
6778 MIR 164 TE_peak all_peaks 1.0000000000
6779 MIR 191 TE_peak all_peaks 1.0000000000
6780 MIR 146 TE_peak all_peaks 1.0000000000
6781 Alu 47 not_TE_peak all_peaks 0.2117117117
6782 MIR 147 TE_peak all_peaks 0.8352272727
6783 MIR 108 TE_peak all_peaks 0.5654450262
6784 MIR 45 not_TE_peak all_peaks 0.1923076923
6785 Simple_repeat 27 TE_peak all_peaks 1.0000000000
6786 Alu 57 not_TE_peak all_peaks 0.4351145038
6787 MIR 73 TE_peak all_peaks 1.0000000000
6788 RTE-BovB 74 TE_peak all_peaks 0.6491228070
6789 <NA> NA not_TE_peak all_peaks NA
6790 L2 54 not_TE_peak all_peaks 0.1565217391
6791 ERVL-MaLR 520 TE_peak all_peaks 1.0000000000
6792 L2 365 TE_peak all_peaks 1.0000000000
6793 MIR 133 TE_peak all_peaks 1.0000000000
6794 Alu 293 TE_peak all_peaks 1.0000000000
6795 MIR 104 TE_peak all_peaks 1.0000000000
6796 LTR? 2 not_TE_peak all_peaks 0.0158730159
6797 Alu 38 not_TE_peak all_peaks 0.1254125413
6798 L2 44 TE_peak all_peaks 1.0000000000
6799 L2 161 TE_peak all_peaks 1.0000000000
6800 ERVL-MaLR 16 not_TE_peak all_peaks 0.0500000000
6801 MIR 110 TE_peak all_peaks 0.7692307692
6802 <NA> NA not_TE_peak all_peaks NA
6803 L2 99 TE_peak all_peaks 0.9082568807
6804 MIR 157 TE_peak all_peaks 1.0000000000
6805 Alu 155 TE_peak all_peaks 0.5098684211
6806 L1 110 TE_peak all_peaks 1.0000000000
6807 MIR 90 TE_peak all_peaks 1.0000000000
6808 hAT-Charlie 129 TE_peak all_peaks 1.0000000000
6809 Alu 102 not_TE_peak all_peaks 0.3355263158
6810 hAT-Charlie 69 not_TE_peak all_peaks 0.4233128834
6811 L2 245 TE_peak all_peaks 0.6920903955
6812 L2 227 TE_peak all_peaks 0.6358543417
6813 L2 319 TE_peak all_peaks 0.8529411765
6814 <NA> NA not_TE_peak all_peaks NA
6815 TcMar-Tigger 448 TE_peak all_peaks 0.9105691057
6816 Alu 126 not_TE_peak all_peaks 0.4038461538
6817 Alu 83 not_TE_peak all_peaks 0.2703583062
6818 L2 129 TE_peak all_peaks 1.0000000000
6819 hAT-Charlie 1 not_TE_peak all_peaks 0.0007272727
6820 Low_complexity 41 TE_peak all_peaks 1.0000000000
6821 Alu 264 TE_peak all_peaks 0.9850746269
6822 <NA> NA not_TE_peak all_peaks NA
6823 hAT-Charlie 109 TE_peak all_peaks 1.0000000000
6824 MIR 100 TE_peak all_peaks 1.0000000000
6825 <NA> NA not_TE_peak all_peaks NA
6826 L2 155 TE_peak all_peaks 1.0000000000
6827 <NA> NA not_TE_peak all_peaks NA
6828 L1 57 not_TE_peak all_peaks 0.2794117647
6829 hAT-Tip100 56 TE_peak all_peaks 1.0000000000
6830 TcMar-Tigger 141 TE_peak all_peaks 1.0000000000
6831 Alu 103 not_TE_peak all_peaks 0.3388157895
6832 Alu 42 not_TE_peak all_peaks 0.2470588235
6833 Alu 133 TE_peak all_peaks 1.0000000000
6834 Simple_repeat 29 TE_peak all_peaks 1.0000000000
6835 MIR 181 TE_peak all_peaks 1.0000000000
6836 Alu 103 TE_peak all_peaks 1.0000000000
6837 Alu 232 TE_peak all_peaks 0.9243027888
6838 CR1 14 not_TE_peak all_peaks 0.0387811634
6839 Simple_repeat 44 TE_peak all_peaks 1.0000000000
6840 MIR 36 not_TE_peak all_peaks 0.1846153846
6841 Simple_repeat 31 TE_peak all_peaks 1.0000000000
6842 Alu 330 TE_peak all_peaks 1.0000000000
6843 Alu 157 TE_peak all_peaks 1.0000000000
6844 L2 355 TE_peak all_peaks 0.9861111111
6845 L2 214 TE_peak all_peaks 1.0000000000
6846 L2 22 not_TE_peak all_peaks 0.2417582418
6847 ERVL-MaLR 83 TE_peak all_peaks 0.5424836601
6848 L2 128 TE_peak all_peaks 1.0000000000
6849 MIR 1 not_TE_peak all_peaks 0.0126582278
6850 Alu 229 TE_peak all_peaks 0.7633333333
6851 MIR 9 not_TE_peak all_peaks 0.0596026490
6852 MIR 244 TE_peak all_peaks 1.0000000000
6853 MIR 69 TE_peak all_peaks 1.0000000000
6854 Alu 77 not_TE_peak all_peaks 0.2627986348
6855 Alu 171 TE_peak all_peaks 0.6173285199
6856 ERVL 239 TE_peak all_peaks 1.0000000000
6857 MIR 67 TE_peak all_peaks 1.0000000000
6858 Alu 28 not_TE_peak all_peaks 0.0883280757
6859 <NA> NA not_TE_peak all_peaks NA
6860 Low_complexity 38 TE_peak all_peaks 1.0000000000
6861 L2 113 TE_peak all_peaks 0.6312849162
6862 Alu 292 TE_peak all_peaks 1.0000000000
6863 MIR 35 not_TE_peak all_peaks 0.2611940299
6864 Alu 227 TE_peak all_peaks 0.7442622951
6865 ERV1 390 TE_peak all_peaks 0.8609271523
6866 ERVK 542 TE_peak all_peaks 0.5604963806
6867 <NA> NA not_TE_peak all_peaks NA
6868 Simple_repeat 24 TE_peak all_peaks 1.0000000000
6869 MIR 19 not_TE_peak all_peaks 0.1570247934
6870 MIR 55 TE_peak all_peaks 1.0000000000
6871 Simple_repeat 36 TE_peak all_peaks 1.0000000000
6872 ERVL 479 not_TE_peak all_peaks 0.2437659033
6873 ERVL 39 not_TE_peak all_peaks 0.1572580645
6874 ERVL 401 TE_peak all_peaks 0.9828431373
6875 L1 483 not_TE_peak all_peaks 0.4873864783
6876 Alu 81 not_TE_peak all_peaks 0.2745762712
6877 Alu 32 not_TE_peak all_peaks 0.1118881119
6878 ERVL 100 TE_peak all_peaks 1.0000000000
6879 Simple_repeat 27 TE_peak all_peaks 1.0000000000
6880 ERVL 148 TE_peak all_peaks 1.0000000000
6881 Simple_repeat 89 TE_peak all_peaks 1.0000000000
6882 MIR 58 TE_peak all_peaks 1.0000000000
6883 L1 221 not_TE_peak all_peaks 0.4633123690
6884 Alu 65 not_TE_peak all_peaks 0.2226027397
6885 ERV1 1606 TE_peak all_peaks 1.0000000000
6886 RTE-BovB 70 TE_peak all_peaks 0.7291666667
6887 <NA> NA not_TE_peak all_peaks NA
6888 hAT-Charlie 28 not_TE_peak all_peaks 0.1739130435
6889 L2 541 TE_peak all_peaks 1.0000000000
6890 Simple_repeat 40 TE_peak all_peaks 1.0000000000
6891 Simple_repeat 46 TE_peak all_peaks 1.0000000000
6892 <NA> NA not_TE_peak all_peaks NA
6893 Alu 204 TE_peak all_peaks 0.7157894737
6894 MIR 128 TE_peak all_peaks 1.0000000000
6895 L2 56 TE_peak all_peaks 1.0000000000
6896 L2 64 TE_peak all_peaks 1.0000000000
6897 ERVL-MaLR 369 TE_peak all_peaks 0.7735849057
6898 <NA> NA not_TE_peak all_peaks NA
6899 <NA> NA not_TE_peak all_peaks NA
6900 L1 141 TE_peak all_peaks 0.6811594203
6901 Alu 283 TE_peak all_peaks 0.9826388889
6902 L2 120 not_TE_peak all_peaks 0.2992518703
6903 CR1 137 TE_peak all_peaks 0.9319727891
6904 Simple_repeat 41 TE_peak all_peaks 1.0000000000
6905 Low_complexity 118 TE_peak all_peaks 1.0000000000
6906 MIR 32 not_TE_peak all_peaks 0.1553398058
6907 L2 349 TE_peak all_peaks 0.9184210526
6908 MIR 130 TE_peak all_peaks 1.0000000000
6909 MIR 84 TE_peak all_peaks 1.0000000000
6910 L2 100 TE_peak all_peaks 1.0000000000
6911 Simple_repeat 50 TE_peak all_peaks 1.0000000000
6912 L2 194 TE_peak all_peaks 1.0000000000
6913 MIR 71 TE_peak all_peaks 1.0000000000
6914 L2 106 TE_peak all_peaks 1.0000000000
6915 L2 216 TE_peak all_peaks 1.0000000000
6916 MIR 178 TE_peak all_peaks 1.0000000000
6917 MIR 93 TE_peak all_peaks 0.6838235294
6918 L2 77 TE_peak all_peaks 1.0000000000
6919 Simple_repeat 51 TE_peak all_peaks 1.0000000000
6920 Alu 251 TE_peak all_peaks 1.0000000000
6921 L2 309 TE_peak all_peaks 1.0000000000
6922 hAT-Charlie 187 TE_peak all_peaks 1.0000000000
6923 L2 145 TE_peak all_peaks 1.0000000000
6924 Alu 59 not_TE_peak all_peaks 0.1973244147
6925 hAT-Charlie 87 TE_peak all_peaks 0.7565217391
6926 MIR 50 TE_peak all_peaks 1.0000000000
6927 CR1 59 TE_peak all_peaks 0.5900000000
6928 hAT-Tip100 148 TE_peak all_peaks 1.0000000000
6929 MIR 134 TE_peak all_peaks 0.9503546099
6930 MIR 44 TE_peak all_peaks 1.0000000000
6931 Alu 31 not_TE_peak all_peaks 0.1036789298
6932 Alu 223 TE_peak all_peaks 0.7508417508
6933 Alu 254 TE_peak all_peaks 0.8382838284
6934 L2 128 TE_peak all_peaks 1.0000000000
6935 Simple_repeat 26 TE_peak all_peaks 1.0000000000
6936 L2 123 TE_peak all_peaks 1.0000000000
6937 L2 71 TE_peak all_peaks 1.0000000000
6938 MIR 69 TE_peak all_peaks 0.9200000000
6939 MIR 72 TE_peak all_peaks 1.0000000000
6940 Alu 108 TE_peak all_peaks 0.7605633803
6941 Alu 143 TE_peak all_peaks 0.8218390805
6942 L2 159 TE_peak all_peaks 1.0000000000
6943 Alu 26 not_TE_peak all_peaks 0.0855263158
6944 <NA> NA not_TE_peak all_peaks NA
6945 Simple_repeat 30 TE_peak all_peaks 1.0000000000
6946 Alu 55 not_TE_peak all_peaks 0.1774193548
6947 TcMar-Tigger 94 TE_peak all_peaks 1.0000000000
6948 TcMar-Tigger 80 TE_peak all_peaks 1.0000000000
6949 MIR 66 TE_peak all_peaks 1.0000000000
6950 Alu 67 not_TE_peak all_peaks 0.2310344828
6951 L1 232 TE_peak all_peaks 0.5471698113
6952 Alu 253 TE_peak all_peaks 1.0000000000
6953 L1 45 TE_peak all_peaks 1.0000000000
6954 Alu 165 TE_peak all_peaks 0.5593220339
6955 Alu 67 not_TE_peak all_peaks 0.2271186441
6956 ERVL 155 TE_peak all_peaks 1.0000000000
6957 ERVL 183 not_TE_peak all_peaks 0.2909379968
6958 ERVL 336 TE_peak all_peaks 0.5341812401
6959 ERVL 311 TE_peak all_peaks 1.0000000000
6960 Alu 76 not_TE_peak all_peaks 0.2533333333
6961 hAT-Charlie 112 TE_peak all_peaks 0.6054054054
6962 Simple_repeat 26 TE_peak all_peaks 1.0000000000
6963 MIR 7 not_TE_peak all_peaks 0.0275590551
6964 Alu 107 not_TE_peak all_peaks 0.3440514469
6965 Alu 300 TE_peak all_peaks 1.0000000000
6966 L2 46 not_TE_peak all_peaks 0.2513661202
6967 Alu 120 TE_peak all_peaks 1.0000000000
6968 Simple_repeat 28 TE_peak all_peaks 1.0000000000
6969 Alu 13 not_TE_peak all_peaks 0.0457746479
6970 Alu 214 TE_peak all_peaks 0.6903225806
6971 ERV1 326 TE_peak all_peaks 1.0000000000
6972 Alu 30 not_TE_peak all_peaks 0.0974025974
6973 Simple_repeat 9 TE_peak all_peaks 0.5294117647
6974 Simple_repeat 40 TE_peak all_peaks 1.0000000000
6975 Simple_repeat 55 TE_peak all_peaks 0.9821428571
6976 Alu 254 TE_peak all_peaks 1.0000000000
6977 L1 93 TE_peak all_peaks 1.0000000000
6978 L1 26 TE_peak all_peaks 1.0000000000
6979 SVA 273 not_TE_peak all_peaks 0.1641611545
6980 <NA> NA not_TE_peak all_peaks NA
6981 <NA> NA not_TE_peak all_peaks NA
6982 <NA> NA not_TE_peak all_peaks NA
6983 MIR 127 TE_peak all_peaks 1.0000000000
6984 L2 289 TE_peak all_peaks 0.7279596977
6985 Alu 47 not_TE_peak all_peaks 0.1546052632
6986 Alu 133 TE_peak all_peaks 0.8260869565
6987 ERVL 231 TE_peak all_peaks 0.8461538462
6988 <NA> NA not_TE_peak all_peaks NA
6989 L2 24 not_TE_peak all_peaks 0.3428571429
6990 L2 876 TE_peak all_peaks 0.7899008115
6991 L2 254 TE_peak all_peaks 0.7134831461
6992 ERVL-MaLR 391 TE_peak all_peaks 0.7294776119
6993 L2 284 TE_peak all_peaks 1.0000000000
6994 L2 211 TE_peak all_peaks 0.6593750000
6995 <NA> NA not_TE_peak all_peaks NA
6996 MIR 71 TE_peak all_peaks 1.0000000000
6997 <NA> NA not_TE_peak all_peaks NA
6998 L2 65 not_TE_peak all_peaks 0.2076677316
6999 MIR 64 TE_peak all_peaks 1.0000000000
7000 L2 171 TE_peak all_peaks 0.9095744681
7001 L2 46 TE_peak all_peaks 0.6571428571
7002 <NA> NA not_TE_peak all_peaks NA
7003 ERV1 118 TE_peak all_peaks 1.0000000000
7004 ERV1 179 TE_peak all_peaks 1.0000000000
7005 ERV1 50 not_TE_peak all_peaks 0.3086419753
7006 L2 295 TE_peak all_peaks 1.0000000000
7007 CR1 191 TE_peak all_peaks 1.0000000000
7008 hAT 124 TE_peak all_peaks 1.0000000000
7009 MIR 144 TE_peak all_peaks 0.9795918367
7010 Helitron 183 TE_peak all_peaks 1.0000000000
7011 L2 40 TE_peak all_peaks 1.0000000000
7012 hAT-Charlie 33 TE_peak all_peaks 1.0000000000
7013 Alu 15 not_TE_peak all_peaks 0.0517241379
7014 <NA> NA not_TE_peak all_peaks NA
7015 <NA> NA not_TE_peak all_peaks NA
7016 ERVK 572 TE_peak all_peaks 0.5964546403
7017 <NA> NA not_TE_peak all_peaks NA
7018 MIR 29 not_TE_peak all_peaks 0.1457286432
7019 L1 45 TE_peak all_peaks 1.0000000000
7020 Simple_repeat 32 TE_peak all_peaks 1.0000000000
7021 L2 372 TE_peak all_peaks 0.7395626243
7022 MIR 62 TE_peak all_peaks 1.0000000000
7023 L2 228 TE_peak all_peaks 1.0000000000
7024 L2 232 TE_peak all_peaks 1.0000000000
7025 L2 175 TE_peak all_peaks 1.0000000000
7026 L2 232 TE_peak all_peaks 0.5576923077
7027 MIR 113 TE_peak all_peaks 1.0000000000
7028 L2 78 TE_peak all_peaks 1.0000000000
7029 TcMar-Tigger 77 not_TE_peak all_peaks 0.4074074074
7030 <NA> NA not_TE_peak all_peaks NA
7031 <NA> NA not_TE_peak all_peaks NA
7032 <NA> NA not_TE_peak all_peaks NA
7033 L2 203 TE_peak all_peaks 0.7718631179
7034 MIR 73 not_TE_peak all_peaks 0.4055555556
7035 Unknown 216 TE_peak all_peaks 1.0000000000
7036 MIR 149 TE_peak all_peaks 1.0000000000
7037 MIR 168 TE_peak all_peaks 1.0000000000
7038 Simple_repeat 40 TE_peak all_peaks 1.0000000000
7039 MIR 169 TE_peak all_peaks 0.8535353535
7040 MIR 150 TE_peak all_peaks 1.0000000000
7041 MIR 118 TE_peak all_peaks 0.6592178771
7042 MIR 75 TE_peak all_peaks 0.6250000000
7043 Low_complexity 45 TE_peak all_peaks 1.0000000000
7044 Simple_repeat 17 not_TE_peak all_peaks 0.4857142857
7045 Simple_repeat 63 TE_peak all_peaks 1.0000000000
7046 L2 92 TE_peak all_peaks 0.6618705036
7047 MIR 179 TE_peak all_peaks 0.8994974874
7048 MIR 134 TE_peak all_peaks 1.0000000000
7049 Simple_repeat 27 TE_peak all_peaks 0.5000000000
7050 hAT-Charlie 140 TE_peak all_peaks 1.0000000000
7051 L1 66 TE_peak all_peaks 1.0000000000
7052 Low_complexity 37 TE_peak all_peaks 1.0000000000
7053 ERVL 292 TE_peak all_peaks 1.0000000000
7054 MIR 27 not_TE_peak all_peaks 0.1928571429
7055 ERVL-MaLR 135 TE_peak all_peaks 0.7142857143
7056 MIR 224 TE_peak all_peaks 1.0000000000
7057 MIR 59 TE_peak all_peaks 1.0000000000
7058 <NA> NA not_TE_peak all_peaks NA
7059 L2 110 TE_peak all_peaks 0.5913978495
7060 Simple_repeat 63 TE_peak all_peaks 1.0000000000
7061 MIR 136 TE_peak all_peaks 1.0000000000
7062 Simple_repeat 30 TE_peak all_peaks 1.0000000000
7063 <NA> NA not_TE_peak all_peaks NA
7064 L2 61 TE_peak all_peaks 1.0000000000
7065 L2 112 not_TE_peak all_peaks 0.2647754137
7066 <NA> NA not_TE_peak all_peaks NA
7067 ERVK 290 not_TE_peak all_peaks 0.2865612648
7068 ERVL 529 TE_peak all_peaks 0.5990939977
7069 MIR 283 TE_peak all_peaks 1.0000000000
7070 ERV1 65 not_TE_peak all_peaks 0.1585365854
7071 MIR 83 TE_peak all_peaks 1.0000000000
7072 MIR 16 not_TE_peak all_peaks 0.0851063830
7073 L2 154 TE_peak all_peaks 1.0000000000
7074 MIR 122 TE_peak all_peaks 0.6192893401
7075 Alu 48 not_TE_peak all_peaks 0.1589403974
7076 L2 11 not_TE_peak all_peaks 0.0277078086
7077 <NA> NA not_TE_peak all_peaks NA
7078 L2 122 TE_peak all_peaks 1.0000000000
7079 <NA> NA not_TE_peak all_peaks NA
7080 <NA> NA not_TE_peak all_peaks NA
7081 MIR 66 TE_peak all_peaks 1.0000000000
7082 MIR 162 TE_peak all_peaks 1.0000000000
7083 <NA> NA not_TE_peak all_peaks NA
7084 Simple_repeat 497 TE_peak all_peaks 0.9359698682
7085 L2 185 TE_peak all_peaks 1.0000000000
7086 L1 245 not_TE_peak all_peaks 0.2614727855
7087 MIR 194 TE_peak all_peaks 1.0000000000
7088 MIR 117 TE_peak all_peaks 1.0000000000
7089 L2 31 TE_peak all_peaks 0.5961538462
7090 <NA> NA not_TE_peak all_peaks NA
7091 MIR 2 not_TE_peak all_peaks 0.0135135135
7092 CR1 25 not_TE_peak all_peaks 0.2577319588
7093 L2 106 TE_peak all_peaks 1.0000000000
7094 L2 194 TE_peak all_peaks 1.0000000000
7095 L2 130 TE_peak all_peaks 0.8724832215
7096 <NA> NA not_TE_peak all_peaks NA
7097 L2 138 TE_peak all_peaks 0.6418604651
7098 MIR 130 TE_peak all_peaks 1.0000000000
7099 MIR 68 TE_peak all_peaks 0.6415094340
7100 L2 30 not_TE_peak all_peaks 0.1587301587
7101 L2 137 TE_peak all_peaks 1.0000000000
7102 L2 281 TE_peak all_peaks 0.6627358491
7103 L2 84 TE_peak all_peaks 0.7777777778
7104 Simple_repeat 38 TE_peak all_peaks 1.0000000000
7105 <NA> NA not_TE_peak all_peaks NA
7106 <NA> NA not_TE_peak all_peaks NA
7107 <NA> NA not_TE_peak all_peaks NA
7108 MIR 184 TE_peak all_peaks 0.8518518519
7109 MIR 75 TE_peak all_peaks 0.5067567568
7110 Simple_repeat 47 TE_peak all_peaks 1.0000000000
7111 <NA> NA not_TE_peak all_peaks NA
7112 ERVL-MaLR 300 TE_peak all_peaks 0.8310249307
7113 ERVL-MaLR 286 TE_peak all_peaks 0.8148148148
7114 Simple_repeat 40 TE_peak all_peaks 1.0000000000
7115 <NA> NA not_TE_peak all_peaks NA
7116 <NA> NA not_TE_peak all_peaks NA
7117 ERVL-MaLR 139 TE_peak all_peaks 0.5285171103
7118 L1 501 TE_peak all_peaks 0.6752021563
7119 ERV1 738 not_TE_peak all_peaks 0.4470018171
7120 MIR 53 not_TE_peak all_peaks 0.3925925926
7121 L2 376 TE_peak all_peaks 0.7067669173
7122 <NA> NA not_TE_peak all_peaks NA
7123 L2 82 TE_peak all_peaks 1.0000000000
7124 L2 90 TE_peak all_peaks 0.5142857143
7125 Simple_repeat 39 TE_peak all_peaks 1.0000000000
7126 L2 28 not_TE_peak all_peaks 0.1064638783
7127 Alu 114 not_TE_peak all_peaks 0.3725490196
7128 Simple_repeat 21 TE_peak all_peaks 1.0000000000
7129 MIR 67 not_TE_peak all_peaks 0.3268292683
7130 L2 49 not_TE_peak all_peaks 0.3888888889
7131 L2 67 not_TE_peak all_peaks 0.2427536232
7132 Simple_repeat 55 TE_peak all_peaks 0.7432432432
7133 <NA> NA not_TE_peak all_peaks NA
7134 Simple_repeat 42 TE_peak all_peaks 1.0000000000
7135 L2 21 not_TE_peak all_peaks 0.2876712329
7136 L2 101 TE_peak all_peaks 1.0000000000
7137 MIR 212 TE_peak all_peaks 1.0000000000
7138 MIR 135 TE_peak all_peaks 1.0000000000
7139 <NA> NA not_TE_peak all_peaks NA
7140 Alu 264 TE_peak all_peaks 1.0000000000
7141 L2 8 not_TE_peak all_peaks 0.0522875817
7142 MIR 181 TE_peak all_peaks 1.0000000000
7143 MIR 155 TE_peak all_peaks 1.0000000000
7144 MIR 142 TE_peak all_peaks 1.0000000000
7145 <NA> NA not_TE_peak all_peaks NA
7146 MIR 203 TE_peak all_peaks 1.0000000000
7147 L1 80 not_TE_peak all_peaks 0.3149606299
7148 MIR 66 TE_peak all_peaks 1.0000000000
7149 Alu 92 not_TE_peak all_peaks 0.4181818182
7150 MIR 136 TE_peak all_peaks 1.0000000000
7151 CR1 120 TE_peak all_peaks 1.0000000000
7152 MIR 120 TE_peak all_peaks 1.0000000000
7153 MIR 2 not_TE_peak all_peaks 0.0277777778
7154 <NA> NA not_TE_peak all_peaks NA
7155 <NA> NA not_TE_peak all_peaks NA
7156 MIR 117 TE_peak all_peaks 1.0000000000
7157 L2 168 TE_peak all_peaks 0.8983957219
7158 L2 92 not_TE_peak all_peaks 0.4532019704
7159 <NA> NA not_TE_peak all_peaks NA
7160 CR1 137 TE_peak all_peaks 1.0000000000
7161 <NA> NA not_TE_peak all_peaks NA
7162 <NA> NA not_TE_peak all_peaks NA
7163 Simple_repeat 28 TE_peak all_peaks 1.0000000000
7164 <NA> NA not_TE_peak all_peaks NA
7165 MIR 100 TE_peak all_peaks 1.0000000000
7166 Simple_repeat 20 TE_peak all_peaks 1.0000000000
7167 MIR 103 not_TE_peak all_peaks 0.4401709402
7168 MIR 128 TE_peak all_peaks 1.0000000000
7169 MIR 114 TE_peak all_peaks 0.5816326531
7170 <NA> NA not_TE_peak all_peaks NA
7171 MIR 115 TE_peak all_peaks 1.0000000000
7172 MIR 198 TE_peak all_peaks 1.0000000000
7173 <NA> NA not_TE_peak all_peaks NA
7174 MIR 163 TE_peak all_peaks 1.0000000000
7175 L2 50 TE_peak all_peaks 1.0000000000
7176 <NA> NA not_TE_peak all_peaks NA
7177 MIR 11 not_TE_peak all_peaks 0.0452674897
7178 MIR 28 not_TE_peak all_peaks 0.1676646707
7179 Simple_repeat 5 not_TE_peak all_peaks 0.2000000000
7180 MIR 121 TE_peak all_peaks 1.0000000000
7181 TcMar-Tc2 115 not_TE_peak all_peaks 0.3372434018
7182 <NA> NA not_TE_peak all_peaks NA
7183 L2 7 not_TE_peak all_peaks 0.0522388060
7184 MIR 109 TE_peak all_peaks 0.5677083333
7185 <NA> NA not_TE_peak all_peaks NA
7186 <NA> NA not_TE_peak all_peaks NA
7187 <NA> NA not_TE_peak all_peaks NA
7188 Simple_repeat 85 TE_peak all_peaks 1.0000000000
7189 Simple_repeat 73 TE_peak all_peaks 1.0000000000
7190 Simple_repeat 31 TE_peak all_peaks 1.0000000000
7191 Simple_repeat 56 TE_peak all_peaks 1.0000000000
7192 Simple_repeat 28 TE_peak all_peaks 1.0000000000
7193 <NA> NA not_TE_peak all_peaks NA
7194 ERVL-MaLR 208 TE_peak all_peaks 0.6910299003
7195 L2 170 TE_peak all_peaks 1.0000000000
7196 Alu 80 not_TE_peak all_peaks 0.4519774011
7197 Simple_repeat 30 TE_peak all_peaks 1.0000000000
7198 MIR 81 TE_peak all_peaks 0.6532258065
7199 Low_complexity 35 TE_peak all_peaks 1.0000000000
7200 Simple_repeat 31 TE_peak all_peaks 1.0000000000
7201 MIR 210 TE_peak all_peaks 1.0000000000
7202 MIR 160 TE_peak all_peaks 0.7619047619
7203 MIR 138 TE_peak all_peaks 1.0000000000
7204 MIR 59 not_TE_peak all_peaks 0.3687500000
7205 MIR 46 TE_peak all_peaks 1.0000000000
7206 <NA> NA not_TE_peak all_peaks NA
7207 Simple_repeat 17 TE_peak all_peaks 1.0000000000
7208 Low_complexity 18 TE_peak all_peaks 1.0000000000
7209 Simple_repeat 48 TE_peak all_peaks 1.0000000000
7210 MIR 137 TE_peak all_peaks 1.0000000000
7211 L2 104 not_TE_peak all_peaks 0.2626262626
7212 Alu 237 TE_peak all_peaks 0.8033898305
7213 L2 84 TE_peak all_peaks 0.8484848485
7214 L2 173 TE_peak all_peaks 1.0000000000
7215 <NA> NA not_TE_peak all_peaks NA
7216 L2 110 not_TE_peak all_peaks 0.2534562212
7217 L2 162 TE_peak all_peaks 1.0000000000
7218 MIR 174 TE_peak all_peaks 1.0000000000
7219 L2 257 TE_peak all_peaks 1.0000000000
7220 L2 71 not_TE_peak all_peaks 0.2817460317
7221 SVA 127 not_TE_peak all_peaks 0.0648621042
7222 Alu 217 TE_peak all_peaks 1.0000000000
7223 MIR 240 TE_peak all_peaks 1.0000000000
7224 L2 75 TE_peak all_peaks 1.0000000000
7225 Alu 137 TE_peak all_peaks 1.0000000000
7226 Alu 37 not_TE_peak all_peaks 0.1213114754
7227 <NA> NA not_TE_peak all_peaks NA
7228 L2 45 not_TE_peak all_peaks 0.3308823529
7229 L1 112 not_TE_peak all_peaks 0.1679160420
7230 <NA> NA not_TE_peak all_peaks NA
7231 L2 44 not_TE_peak all_peaks 0.3577235772
7232 L2 319 TE_peak all_peaks 1.0000000000
7233 <NA> NA not_TE_peak all_peaks NA
7234 L2 109 TE_peak all_peaks 1.0000000000
7235 Alu 37 not_TE_peak all_peaks 0.1205211726
7236 MIR 109 TE_peak all_peaks 0.7414965986
7237 ERVK 673 TE_peak all_peaks 0.6888433982
7238 ERVK 133 TE_peak all_peaks 0.9047619048
7239 L2 24 not_TE_peak all_peaks 0.1016949153
7240 <NA> NA not_TE_peak all_peaks NA
7241 <NA> NA not_TE_peak all_peaks NA
7242 L2 360 TE_peak all_peaks 0.7392197125
7243 MIR 191 TE_peak all_peaks 1.0000000000
7244 MIR 91 TE_peak all_peaks 1.0000000000
7245 ERVL-MaLR 112 TE_peak all_peaks 1.0000000000
7246 hAT-Charlie 67 TE_peak all_peaks 0.6907216495
7247 Alu 16 not_TE_peak all_peaks 0.0526315789
7248 MIR 75 not_TE_peak all_peaks 0.3640776699
7249 MIR 166 TE_peak all_peaks 1.0000000000
7250 MIR 189 TE_peak all_peaks 1.0000000000
7251 L2 74 not_TE_peak all_peaks 0.4431137725
7252 Alu 24 not_TE_peak all_peaks 0.0774193548
7253 hAT-Charlie 110 TE_peak all_peaks 1.0000000000
7254 Alu 112 TE_peak all_peaks 0.6627218935
7255 ERVL-MaLR 156 TE_peak all_peaks 0.7878787879
7256 <NA> NA not_TE_peak all_peaks NA
7257 MIR 198 TE_peak all_peaks 1.0000000000
7258 MIR 71 TE_peak all_peaks 1.0000000000
7259 MIR 156 TE_peak all_peaks 1.0000000000
7260 MIR 88 TE_peak all_peaks 0.9166666667
7261 MIR 69 not_TE_peak all_peaks 0.4156626506
7262 MIR 124 TE_peak all_peaks 0.6231155779
7263 MIR 56 TE_peak all_peaks 1.0000000000
7264 ERVL 74 not_TE_peak all_peaks 0.2483221477
7265 MIR 4 not_TE_peak all_peaks 0.0396039604
7266 L2 234 not_TE_peak all_peaks 0.4178571429
7267 L2 135 TE_peak all_peaks 0.6994818653
7268 L2 328 not_TE_peak all_peaks 0.3430962343
7269 MIR 107 TE_peak all_peaks 1.0000000000
7270 L2 91 TE_peak all_peaks 0.9784946237
7271 <NA> NA not_TE_peak all_peaks NA
7272 ERV1 250 TE_peak all_peaks 0.5567928731
7273 <NA> NA not_TE_peak all_peaks NA
7274 Simple_repeat 34 TE_peak all_peaks 1.0000000000
7275 MIR 169 TE_peak all_peaks 1.0000000000
7276 L2 78 TE_peak all_peaks 1.0000000000
7277 L2 114 TE_peak all_peaks 1.0000000000
7278 Alu 112 TE_peak all_peaks 0.6746987952
7279 Alu 134 not_TE_peak all_peaks 0.4000000000
7280 ERV1 339 TE_peak all_peaks 1.0000000000
7281 Alu 167 TE_peak all_peaks 1.0000000000
7282 ERV1 54 not_TE_peak all_peaks 0.1849315068
7283 L2 70 TE_peak all_peaks 0.6730769231
7284 MIR 115 TE_peak all_peaks 1.0000000000
7285 Simple_repeat 52 TE_peak all_peaks 1.0000000000
7286 L2 67 not_TE_peak all_peaks 0.3401015228
7287 L2 45 TE_peak all_peaks 1.0000000000
7288 Unknown 182 TE_peak all_peaks 1.0000000000
7289 hAT-Charlie 109 TE_peak all_peaks 0.5736842105
7290 ERV1 171 not_TE_peak all_peaks 0.4776536313
7291 <NA> NA not_TE_peak all_peaks NA
7292 MIR 39 not_TE_peak all_peaks 0.2582781457
7293 MIR 19 not_TE_peak all_peaks 0.1900000000
7294 <NA> NA not_TE_peak all_peaks NA
7295 Simple_repeat 21 TE_peak all_peaks 1.0000000000
7296 MIR 7 not_TE_peak all_peaks 0.0346534653
7297 MIR 135 TE_peak all_peaks 1.0000000000
7298 MIR 43 not_TE_peak all_peaks 0.1954545455
7299 Low_complexity 39 TE_peak all_peaks 1.0000000000
7300 L2 204 TE_peak all_peaks 0.7640449438
7301 ERV1 547 TE_peak all_peaks 0.8325722983
7302 ERV1 46 not_TE_peak all_peaks 0.0780984720
7303 Simple_repeat 37 TE_peak all_peaks 1.0000000000
7304 MIR 66 TE_peak all_peaks 1.0000000000
7305 L2 103 TE_peak all_peaks 1.0000000000
7306 L2 48 not_TE_peak all_peaks 0.1259842520
7307 MIR 209 TE_peak all_peaks 1.0000000000
7308 <NA> NA not_TE_peak all_peaks NA
7309 MIR 154 TE_peak all_peaks 1.0000000000
7310 L2 48 TE_peak all_peaks 1.0000000000
7311 MIR 156 TE_peak all_peaks 0.6117647059
7312 <NA> NA not_TE_peak all_peaks NA
7313 hAT-Charlie 302 TE_peak all_peaks 1.0000000000
7314 <NA> NA not_TE_peak all_peaks NA
7315 <NA> NA not_TE_peak all_peaks NA
7316 <NA> NA not_TE_peak all_peaks NA
7317 <NA> NA not_TE_peak all_peaks NA
7318 L2 77 not_TE_peak all_peaks 0.3666666667
7319 MIR 97 TE_peak all_peaks 1.0000000000
7320 MIR 168 TE_peak all_peaks 1.0000000000
7321 L2 90 not_TE_peak all_peaks 0.3180212014
7322 L2 484 not_TE_peak all_peaks 0.4440366972
7323 Simple_repeat 38 TE_peak all_peaks 1.0000000000
7324 Simple_repeat 36 TE_peak all_peaks 1.0000000000
7325 Simple_repeat 26 TE_peak all_peaks 1.0000000000
7326 Simple_repeat 19 TE_peak all_peaks 1.0000000000
7327 ERVL-MaLR 58 not_TE_peak all_peaks 0.0993150685
7328 hAT-Charlie 89 TE_peak all_peaks 1.0000000000
7329 hAT-Charlie 107 TE_peak all_peaks 1.0000000000
7330 hAT-Charlie 105 TE_peak all_peaks 1.0000000000
7331 hAT-Charlie 114 TE_peak all_peaks 1.0000000000
7332 MIR 64 TE_peak all_peaks 1.0000000000
7333 Simple_repeat 57 TE_peak all_peaks 1.0000000000
7334 ERVL 351 TE_peak all_peaks 1.0000000000
7335 ERVL-MaLR 154 not_TE_peak all_peaks 0.2938931298
7336 MIR 185 TE_peak all_peaks 0.8685446009
7337 L2 100 TE_peak all_peaks 1.0000000000
7338 MIR 171 TE_peak all_peaks 1.0000000000
7339 L2 18 not_TE_peak all_peaks 0.0937500000
7340 MIR 104 not_TE_peak all_peaks 0.4561403509
7341 L2 78 TE_peak all_peaks 1.0000000000
7342 MIR 148 TE_peak all_peaks 1.0000000000
7343 MIR 39 not_TE_peak all_peaks 0.2020725389
7344 ERVL 447 TE_peak all_peaks 0.6431654676
7345 <NA> NA not_TE_peak all_peaks NA
7346 L2 288 TE_peak all_peaks 1.0000000000
7347 L2 51 not_TE_peak all_peaks 0.4951456311
7348 ERV1 116 TE_peak all_peaks 1.0000000000
7349 MIR 111 TE_peak all_peaks 1.0000000000
7350 L2 314 TE_peak all_peaks 0.9691358025
7351 MIR 81 TE_peak all_peaks 1.0000000000
7352 MIR 166 TE_peak all_peaks 0.9485714286
7353 CR1 27 not_TE_peak all_peaks 0.4285714286
7354 MIR 70 not_TE_peak all_peaks 0.2991452991
7355 L2 70 TE_peak all_peaks 1.0000000000
7356 L2 9 not_TE_peak all_peaks 0.0178571429
7357 L2 266 TE_peak all_peaks 1.0000000000
7358 MIR 128 TE_peak all_peaks 1.0000000000
7359 L2 106 TE_peak all_peaks 1.0000000000
7360 L2 124 TE_peak all_peaks 0.8794326241
7361 L2 93 TE_peak all_peaks 1.0000000000
7362 MIR 84 TE_peak all_peaks 1.0000000000
7363 ERVL 118 not_TE_peak all_peaks 0.2843373494
7364 TcMar-Tc2 180 TE_peak all_peaks 0.7468879668
7365 L2 146 TE_peak all_peaks 0.5140845070
7366 MIR 59 not_TE_peak all_peaks 0.2892156863
7367 L2 205 TE_peak all_peaks 0.8471074380
7368 MIR 106 TE_peak all_peaks 1.0000000000
7369 ERVL-MaLR 126 TE_peak all_peaks 1.0000000000
7370 ERVL 259 TE_peak all_peaks 0.5108481262
7371 ERVL 78 not_TE_peak all_peaks 0.2653061224
7372 MIR 95 not_TE_peak all_peaks 0.4502369668
7373 MIR 135 TE_peak all_peaks 0.5921052632
7374 MIR 37 not_TE_peak all_peaks 0.1947368421
7375 L2 2 not_TE_peak all_peaks 0.0224719101
7376 L2 202 TE_peak all_peaks 1.0000000000
7377 L2 116 TE_peak all_peaks 0.5296803653
7378 <NA> NA not_TE_peak all_peaks NA
7379 ERVL-MaLR 209 TE_peak all_peaks 1.0000000000
7380 ERVL 656 not_TE_peak all_peaks 0.1995133820
7381 ERVL 386 TE_peak all_peaks 0.9278846154
7382 MIR 79 TE_peak all_peaks 1.0000000000
7383 Alu 29 not_TE_peak all_peaks 0.0989761092
7384 Alu 164 TE_peak all_peaks 0.5597269625
7385 <NA> NA not_TE_peak all_peaks NA
7386 hAT-Charlie 45 not_TE_peak all_peaks 0.2406417112
7387 hAT-Charlie 93 TE_peak all_peaks 1.0000000000
7388 MIR 61 not_TE_peak all_peaks 0.3034825871
7389 L1 166 not_TE_peak all_peaks 0.0705782313
7390 L1 104 TE_peak all_peaks 1.0000000000
7391 Alu 177 TE_peak all_peaks 0.6254416961
7392 <NA> NA not_TE_peak all_peaks NA
7393 L2 284 not_TE_peak all_peaks 0.2851405622
7394 Simple_repeat 23 TE_peak all_peaks 1.0000000000
7395 LTR 118 not_TE_peak all_peaks 0.2994923858
7396 LTR 231 TE_peak all_peaks 0.5862944162
7397 L1 181 TE_peak all_peaks 1.0000000000
7398 Simple_repeat 25 TE_peak all_peaks 1.0000000000
7399 L2 58 not_TE_peak all_peaks 0.2093862816
7400 ERVL 41 not_TE_peak all_peaks 0.1814159292
7401 ERVL 145 TE_peak all_peaks 1.0000000000
7402 ERVL 9 not_TE_peak all_peaks 0.0810810811
7403 L1 437 not_TE_peak all_peaks 0.3045296167
7404 MIR 227 TE_peak all_peaks 1.0000000000
7405 L2 85 not_TE_peak all_peaks 0.2961672474
7406 <NA> NA not_TE_peak all_peaks NA
7407 <NA> NA not_TE_peak all_peaks NA
7408 MIR 154 TE_peak all_peaks 1.0000000000
7409 MIR 30 not_TE_peak all_peaks 0.1250000000
7410 L1 34 not_TE_peak all_peaks 0.0928961749
7411 CR1 136 TE_peak all_peaks 1.0000000000
7412 L1 119 TE_peak all_peaks 0.7828947368
7413 MIR 29 not_TE_peak all_peaks 0.3118279570
7414 <NA> NA not_TE_peak all_peaks NA
7415 <NA> NA not_TE_peak all_peaks NA
7416 MIR 133 TE_peak all_peaks 1.0000000000
7417 L2 101 TE_peak all_peaks 1.0000000000
7418 L2 62 TE_peak all_peaks 1.0000000000
7419 MIR 211 TE_peak all_peaks 1.0000000000
7420 Simple_repeat 40 TE_peak all_peaks 1.0000000000
7421 MIR 141 TE_peak all_peaks 0.7500000000
7422 MIR 196 TE_peak all_peaks 1.0000000000
7423 LTR? 227 TE_peak all_peaks 0.5675000000
7424 <NA> NA not_TE_peak all_peaks NA
7425 MIR 179 TE_peak all_peaks 1.0000000000
7426 Alu 85 not_TE_peak all_peaks 0.3346456693
7427 L2 93 not_TE_peak all_peaks 0.2075892857
7428 hAT-Charlie 11 not_TE_peak all_peaks 0.0594594595
7429 L2 236 TE_peak all_peaks 1.0000000000
7430 <NA> NA not_TE_peak all_peaks NA
7431 <NA> NA not_TE_peak all_peaks NA
7432 CR1 121 TE_peak all_peaks 1.0000000000
7433 ERVL-MaLR 176 TE_peak all_peaks 1.0000000000
7434 L1 5 not_TE_peak all_peaks 0.0819672131
7435 MIR 97 not_TE_peak all_peaks 0.4825870647
7436 MIR 32 not_TE_peak all_peaks 0.1916167665
7437 MIR 12 not_TE_peak all_peaks 0.0718562874
7438 <NA> NA not_TE_peak all_peaks NA
7439 L2 67 TE_peak all_peaks 1.0000000000
7440 MIR 133 TE_peak all_peaks 1.0000000000
7441 <NA> NA not_TE_peak all_peaks NA
7442 Unknown 52 TE_peak all_peaks 1.0000000000
7443 Alu 64 not_TE_peak all_peaks 0.2057877814
7444 Simple_repeat 53 TE_peak all_peaks 1.0000000000
7445 Alu 123 TE_peak all_peaks 1.0000000000
7446 Simple_repeat 16 not_TE_peak all_peaks 0.2191780822
7447 MIR 142 TE_peak all_peaks 1.0000000000
7448 MIR 61 TE_peak all_peaks 1.0000000000
7449 MIR 111 not_TE_peak all_peaks 0.4422310757
7450 L2 7 not_TE_peak all_peaks 0.1666666667
7451 Simple_repeat 29 TE_peak all_peaks 1.0000000000
7452 Simple_repeat 45 TE_peak all_peaks 1.0000000000
7453 Simple_repeat 29 TE_peak all_peaks 1.0000000000
7454 L2 242 not_TE_peak all_peaks 0.2160714286
7455 Simple_repeat 59 TE_peak all_peaks 1.0000000000
7456 Low_complexity 71 TE_peak all_peaks 1.0000000000
7457 MIR 162 TE_peak all_peaks 1.0000000000
7458 MIR 192 TE_peak all_peaks 1.0000000000
7459 <NA> NA not_TE_peak all_peaks NA
7460 Alu 58 not_TE_peak all_peaks 0.4427480916
7461 Simple_repeat 23 TE_peak all_peaks 1.0000000000
7462 ERVL-MaLR 118 TE_peak all_peaks 1.0000000000
7463 L2 226 TE_peak all_peaks 1.0000000000
7464 ERVL-MaLR 190 not_TE_peak all_peaks 0.3703703704
7465 hAT-Charlie 141 TE_peak all_peaks 1.0000000000
7466 hAT-Charlie 110 TE_peak all_peaks 1.0000000000
7467 L2 251 not_TE_peak all_peaks 0.1826783115
7468 L2 67 TE_peak all_peaks 1.0000000000
7469 L2 103 TE_peak all_peaks 1.0000000000
7470 L2 103 TE_peak all_peaks 0.5537634409
7471 L2 199 TE_peak all_peaks 0.9613526570
7472 L2 154 TE_peak all_peaks 1.0000000000
7473 <NA> NA not_TE_peak all_peaks NA
7474 Simple_repeat 41 TE_peak all_peaks 1.0000000000
7475 MIR 118 TE_peak all_peaks 0.5989847716
7476 <NA> NA not_TE_peak all_peaks NA
7477 L2 56 not_TE_peak all_peaks 0.1400000000
7478 ERVL 89 TE_peak all_peaks 1.0000000000
7479 L2 79 TE_peak all_peaks 0.6528925620
7480 L2 108 TE_peak all_peaks 1.0000000000
7481 Simple_repeat 30 TE_peak all_peaks 1.0000000000
7482 MIR 145 TE_peak all_peaks 0.7631578947
7483 Simple_repeat 41 TE_peak all_peaks 1.0000000000
7484 hAT-Charlie 37 TE_peak all_peaks 0.8604651163
7485 L2 20 not_TE_peak all_peaks 0.1724137931
7486 MIR 179 TE_peak all_peaks 1.0000000000
7487 ERV1 314 TE_peak all_peaks 1.0000000000
7488 ERVL-MaLR 63 TE_peak all_peaks 1.0000000000
7489 MIR 127 TE_peak all_peaks 1.0000000000
7490 hAT-Charlie 90 TE_peak all_peaks 0.6081081081
7491 MIR 120 TE_peak all_peaks 1.0000000000
7492 Simple_repeat 28 TE_peak all_peaks 1.0000000000
7493 Simple_repeat 47 TE_peak all_peaks 1.0000000000
7494 Simple_repeat 6 TE_peak all_peaks 1.0000000000
7495 Simple_repeat 23 TE_peak all_peaks 1.0000000000
7496 Simple_repeat 51 TE_peak all_peaks 1.0000000000
7497 Alu 14 not_TE_peak all_peaks 0.1272727273
7498 Low_complexity 47 TE_peak all_peaks 1.0000000000
7499 L2 244 TE_peak all_peaks 1.0000000000
7500 CR1 111 not_TE_peak all_peaks 0.2428884026
7501 MIR 73 not_TE_peak all_peaks 0.4709677419
7502 MIR 16 not_TE_peak all_peaks 0.1012658228
7503 MIR 97 TE_peak all_peaks 0.7698412698
7504 MIR 210 TE_peak all_peaks 0.9333333333
7505 L2 73 not_TE_peak all_peaks 0.1437007874
7506 MIR 16 not_TE_peak all_peaks 0.2500000000
7507 <NA> NA not_TE_peak all_peaks NA
7508 MIR 41 not_TE_peak all_peaks 0.2500000000
7509 <NA> NA not_TE_peak all_peaks NA
7510 MIR 82 TE_peak all_peaks 1.0000000000
7511 ERV1 51 not_TE_peak all_peaks 0.1500000000
7512 L2 41 not_TE_peak all_peaks 0.2039800995
7513 MIR 177 TE_peak all_peaks 1.0000000000
7514 CR1 473 TE_peak all_peaks 0.9813278008
7515 MIR 10 not_TE_peak all_peaks 0.1369863014
7516 MIR 131 TE_peak all_peaks 0.6787564767
7517 MIR 75 not_TE_peak all_peaks 0.4335260116
7518 L1 338 TE_peak all_peaks 1.0000000000
7519 MIR 213 TE_peak all_peaks 1.0000000000
7520 ERV1 133 not_TE_peak all_peaks 0.2897603486
7521 MIR 82 not_TE_peak all_peaks 0.3293172691
7522 ERVL-MaLR 196 not_TE_peak all_peaks 0.4345898004
7523 MIR 197 TE_peak all_peaks 1.0000000000
7524 L2 59 not_TE_peak all_peaks 0.1425120773
7525 MIR 215 TE_peak all_peaks 1.0000000000
7526 hAT-Charlie 109 TE_peak all_peaks 0.5291262136
7527 MIR 121 TE_peak all_peaks 1.0000000000
7528 L2 51 TE_peak all_peaks 1.0000000000
7529 MIR 19 not_TE_peak all_peaks 0.2923076923
7530 MIR 24 not_TE_peak all_peaks 0.2033898305
7531 L2 79 TE_peak all_peaks 1.0000000000
7532 L2 73 TE_peak all_peaks 1.0000000000
7533 L2 82 TE_peak all_peaks 0.7008547009
7534 MIR 57 TE_peak all_peaks 1.0000000000
7535 L2 795 TE_peak all_peaks 1.0000000000
7536 MIR 18 not_TE_peak all_peaks 0.1184210526
7537 L2 119 TE_peak all_peaks 0.7256097561
7538 Low_complexity 53 TE_peak all_peaks 1.0000000000
7539 MIR 54 TE_peak all_peaks 1.0000000000
7540 L2 328 TE_peak all_peaks 1.0000000000
7541 Alu 1 not_TE_peak all_peaks 0.0037037037
7542 hAT-Charlie 60 not_TE_peak all_peaks 0.4081632653
7543 hAT-Charlie 166 TE_peak all_peaks 1.0000000000
7544 <NA> NA not_TE_peak all_peaks NA
7545 <NA> NA not_TE_peak all_peaks NA
7546 MIR 63 not_TE_peak all_peaks 0.3368983957
7547 L2 131 TE_peak all_peaks 1.0000000000
7548 L2 444 TE_peak all_peaks 0.9173553719
7549 DNA 158 TE_peak all_peaks 1.0000000000
7550 MIR 171 TE_peak all_peaks 1.0000000000
7551 MIR 173 TE_peak all_peaks 0.9885714286
7552 ERVL-MaLR 325 TE_peak all_peaks 0.9969325153
7553 ERVL 339 TE_peak all_peaks 0.7004132231
7554 MIR 111 TE_peak all_peaks 0.7500000000
7555 <NA> NA not_TE_peak all_peaks NA
7556 Simple_repeat 26 TE_peak all_peaks 1.0000000000
7557 Alu 10 not_TE_peak all_peaks 0.0340136054
7558 MIR 232 TE_peak all_peaks 1.0000000000
7559 L2 28 TE_peak all_peaks 0.5833333333
7560 ERVL-MaLR 207 TE_peak all_peaks 0.5433070866
7561 CR1 253 TE_peak all_peaks 1.0000000000
7562 L1 25 not_TE_peak all_peaks 0.0841750842
7563 ERVL-MaLR 141 TE_peak all_peaks 1.0000000000
7564 ERVL 37 TE_peak all_peaks 1.0000000000
7565 ERVL 547 TE_peak all_peaks 1.0000000000
7566 L1 126 TE_peak all_peaks 0.5101214575
7567 MIR 45 not_TE_peak all_peaks 0.2528089888
7568 CR1 92 TE_peak all_peaks 0.9684210526
7569 L1 36 TE_peak all_peaks 0.7659574468
7570 MIR 150 TE_peak all_peaks 0.9202453988
7571 MIR 179 TE_peak all_peaks 1.0000000000
7572 L2 92 not_TE_peak all_peaks 0.2857142857
7573 L2 347 TE_peak all_peaks 0.5642276423
7574 Simple_repeat 47 TE_peak all_peaks 1.0000000000
7575 L2 26 TE_peak all_peaks 1.0000000000
7576 ERVL-MaLR 6 not_TE_peak all_peaks 0.0116279070
7577 MIR 35 TE_peak all_peaks 1.0000000000
7578 ERVL 261 TE_peak all_peaks 0.6525000000
7579 MIR 76 TE_peak all_peaks 1.0000000000
7580 L1 181 TE_peak all_peaks 1.0000000000
7581 hAT-Charlie 109 TE_peak all_peaks 0.5923913043
7582 L2 365 TE_peak all_peaks 0.8968058968
7583 <NA> NA not_TE_peak all_peaks NA
7584 ERV1 89 not_TE_peak all_peaks 0.2270408163
7585 ERV1 266 TE_peak all_peaks 1.0000000000
7586 ERV1 149 TE_peak all_peaks 0.6592920354
7587 hAT-Charlie 187 TE_peak all_peaks 1.0000000000
7588 L2 61 not_TE_peak all_peaks 0.4692307692
7589 <NA> NA not_TE_peak all_peaks NA
7590 <NA> NA not_TE_peak all_peaks NA
7591 Alu 254 TE_peak all_peaks 0.8220064725
7592 L2 178 TE_peak all_peaks 1.0000000000
7593 ERVL 91 not_TE_peak all_peaks 0.2131147541
7594 L1 37 not_TE_peak all_peaks 0.1968085106
7595 L1 10 not_TE_peak all_peaks 0.1428571429
7596 L1 94 TE_peak all_peaks 0.9494949495
7597 MIR 198 TE_peak all_peaks 0.7951807229
7598 hAT-Charlie 90 TE_peak all_peaks 1.0000000000
7599 hAT-Charlie 123 TE_peak all_peaks 0.9248120301
7600 hAT-Charlie 47 TE_peak all_peaks 1.0000000000
7601 MIR 96 not_TE_peak all_peaks 0.3555555556
7602 ERVL 361 TE_peak all_peaks 0.8574821853
7603 L2 74 not_TE_peak all_peaks 0.2700729927
7604 MIR 38 not_TE_peak all_peaks 0.2773722628
7605 ERVL-MaLR 43 TE_peak all_peaks 1.0000000000
7606 ERVL-MaLR 392 TE_peak all_peaks 1.0000000000
7607 ERVL-MaLR 71 TE_peak all_peaks 1.0000000000
7608 MIR 23 not_TE_peak all_peaks 0.1464968153
7609 hAT-Charlie 201 TE_peak all_peaks 1.0000000000
7610 ERVL 167 TE_peak all_peaks 1.0000000000
7611 L1 350 TE_peak all_peaks 0.8928571429
7612 ERVL-MaLR 301 TE_peak all_peaks 0.5948616601
7613 MIR 67 TE_peak all_peaks 0.5630252101
7614 Simple_repeat 70 TE_peak all_peaks 1.0000000000
7615 <NA> NA not_TE_peak all_peaks NA
7616 MIR 23 not_TE_peak all_peaks 0.1840000000
7617 ERV1 83 TE_peak all_peaks 1.0000000000
7618 Simple_repeat 44 TE_peak all_peaks 1.0000000000
7619 L2 206 TE_peak all_peaks 0.8442622951
7620 MIR 157 TE_peak all_peaks 1.0000000000
7621 L2 116 TE_peak all_peaks 1.0000000000
7622 <NA> NA not_TE_peak all_peaks NA
7623 ERVL-MaLR 406 TE_peak all_peaks 1.0000000000
7624 CR1 99 TE_peak all_peaks 0.9900000000
7625 CR1 75 TE_peak all_peaks 1.0000000000
7626 MIR 61 TE_peak all_peaks 0.5041322314
7627 <NA> NA not_TE_peak all_peaks NA
7628 MIR 133 TE_peak all_peaks 0.7112299465
7629 hAT-Charlie 21 not_TE_peak all_peaks 0.0704697987
7630 L2 221 TE_peak all_peaks 0.7269736842
7631 MIR 200 TE_peak all_peaks 1.0000000000
7632 ERVL 99 not_TE_peak all_peaks 0.2408759124
7633 MIR 137 TE_peak all_peaks 0.6850000000
7634 CR1 82 TE_peak all_peaks 1.0000000000
7635 CR1 40 TE_peak all_peaks 1.0000000000
7636 MIR 62 not_TE_peak all_peaks 0.4492753623
7637 ERVL-MaLR 135 TE_peak all_peaks 0.9926470588
7638 ERVL-MaLR 11 not_TE_peak all_peaks 0.0753424658
7639 hAT-Tip100 262 TE_peak all_peaks 0.8478964401
7640 hAT-Tip100 238 TE_peak all_peaks 1.0000000000
7641 L1 656 TE_peak all_peaks 0.6301633045
7642 Simple_repeat 43 TE_peak all_peaks 1.0000000000
7643 Simple_repeat 31 TE_peak all_peaks 1.0000000000
7644 CR1 137 not_TE_peak all_peaks 0.4202453988
7645 MIR 28 not_TE_peak all_peaks 0.1320754717
7646 MIR 178 TE_peak all_peaks 1.0000000000
7647 Simple_repeat 29 TE_peak all_peaks 1.0000000000
7648 L2 11 not_TE_peak all_peaks 0.0310734463
7649 ERVL-MaLR 290 TE_peak all_peaks 0.6682027650
7650 L2 217 not_TE_peak all_peaks 0.2244053775
7651 L2 127 TE_peak all_peaks 0.8819444444
7652 MIR 200 TE_peak all_peaks 0.8658008658
7653 hAT-Charlie 184 TE_peak all_peaks 1.0000000000
7654 tRNA-RTE 38 not_TE_peak all_peaks 0.4578313253
7655 ERV1 342 TE_peak all_peaks 0.7184873950
7656 MIR 21 not_TE_peak all_peaks 0.3230769231
7657 TcMar-Mariner 80 TE_peak all_peaks 1.0000000000
7658 MIR 232 TE_peak all_peaks 1.0000000000
7659 MIR 100 TE_peak all_peaks 1.0000000000
7660 Alu 64 not_TE_peak all_peaks 0.2133333333
7661 L2 219 TE_peak all_peaks 0.5116822430
7662 ERVL-MaLR 260 TE_peak all_peaks 0.6842105263
7663 RTE-BovB 82 TE_peak all_peaks 0.8118811881
7664 hAT-Charlie 110 TE_peak all_peaks 1.0000000000
7665 L2 125 not_TE_peak all_peaks 0.1554726368
7666 <NA> NA not_TE_peak all_peaks NA
7667 L2 133 not_TE_peak all_peaks 0.1555555556
7668 hAT-Tip100 169 TE_peak all_peaks 1.0000000000
7669 MIR 90 TE_peak all_peaks 1.0000000000
7670 <NA> NA not_TE_peak all_peaks NA
7671 Simple_repeat 10 not_TE_peak all_peaks 0.3030303030
7672 Simple_repeat 66 TE_peak all_peaks 1.0000000000
7673 Simple_repeat 103 TE_peak all_peaks 1.0000000000
7674 Simple_repeat 36 TE_peak all_peaks 1.0000000000
7675 Simple_repeat 63 TE_peak all_peaks 1.0000000000
7676 MIR 147 TE_peak all_peaks 1.0000000000
7677 L2 45 not_TE_peak all_peaks 0.1520270270
7678 L2 211 TE_peak all_peaks 0.6205882353
7679 MIR 82 not_TE_peak all_peaks 0.3644444444
7680 MIR 170 TE_peak all_peaks 1.0000000000
7681 Simple_repeat 38 TE_peak all_peaks 1.0000000000
7682 L1 166 not_TE_peak all_peaks 0.2938053097
7683 MIR 236 TE_peak all_peaks 1.0000000000
7684 L2 50 not_TE_peak all_peaks 0.3521126761
7685 <NA> NA not_TE_peak all_peaks NA
7686 L2 108 TE_peak all_peaks 1.0000000000
7687 L2 136 TE_peak all_peaks 0.9006622517
7688 L2 363 not_TE_peak all_peaks 0.4055865922
7689 <NA> NA not_TE_peak all_peaks NA
7690 CR1 258 TE_peak all_peaks 0.6339066339
7691 CR1 52 not_TE_peak all_peaks 0.1277641278
7692 MIR 69 TE_peak all_peaks 1.0000000000
7693 MIR 28 not_TE_peak all_peaks 0.1944444444
7694 MIR 110 TE_peak all_peaks 0.5418719212
7695 MIR 115 TE_peak all_peaks 1.0000000000
7696 Simple_repeat 31 TE_peak all_peaks 1.0000000000
7697 MIR 72 TE_peak all_peaks 1.0000000000
7698 <NA> NA not_TE_peak all_peaks NA
7699 MIR 90 TE_peak all_peaks 1.0000000000
7700 L2 149 TE_peak all_peaks 0.5359712230
7701 ERVL-MaLR 49 not_TE_peak all_peaks 0.1349862259
7702 ERVL 91 TE_peak all_peaks 1.0000000000
7703 L2 178 not_TE_peak all_peaks 0.4759358289
7704 MIR 81 not_TE_peak all_peaks 0.4009900990
7705 L2 114 TE_peak all_peaks 1.0000000000
7706 MIR 183 TE_peak all_peaks 1.0000000000
7707 <NA> NA not_TE_peak all_peaks NA
7708 L2 39 not_TE_peak all_peaks 0.2516129032
7709 <NA> NA not_TE_peak all_peaks NA
7710 Alu 142 not_TE_peak all_peaks 0.4863013699
7711 MIR 175 TE_peak all_peaks 0.9510869565
7712 L2 114 TE_peak all_peaks 1.0000000000
7713 L2 96 TE_peak all_peaks 1.0000000000
7714 Simple_repeat 34 TE_peak all_peaks 1.0000000000
7715 ERVL-MaLR 265 TE_peak all_peaks 0.6036446469
7716 <NA> NA not_TE_peak all_peaks NA
7717 MIR 52 not_TE_peak all_peaks 0.2342342342
7718 MIR 115 TE_peak all_peaks 1.0000000000
7719 MIR 77 not_TE_peak all_peaks 0.4967741935
7720 Simple_repeat 29 TE_peak all_peaks 1.0000000000
7721 L2 214 TE_peak all_peaks 0.7062706271
7722 L1 144 not_TE_peak all_peaks 0.1550053821
7723 MIR 12 not_TE_peak all_peaks 0.1363636364
7724 Gypsy? 230 TE_peak all_peaks 0.7823129252
7725 ERVL-MaLR 139 not_TE_peak all_peaks 0.4860139860
7726 MIR 196 TE_peak all_peaks 1.0000000000
7727 MIR 124 TE_peak all_peaks 1.0000000000
7728 Alu 56 not_TE_peak all_peaks 0.1794871795
7729 L2 71 TE_peak all_peaks 0.7395833333
7730 hAT-Charlie 39 not_TE_peak all_peaks 0.2671232877
7731 <NA> NA not_TE_peak all_peaks NA
7732 MIR 139 TE_peak all_peaks 0.8424242424
7733 MIR 47 not_TE_peak all_peaks 0.2034632035
7734 MIR 132 TE_peak all_peaks 1.0000000000
7735 Simple_repeat 39 TE_peak all_peaks 1.0000000000
7736 TcMar-Tigger 38 not_TE_peak all_peaks 0.2733812950
7737 L2 246 TE_peak all_peaks 1.0000000000
7738 hAT-Charlie 12 not_TE_peak all_peaks 0.0603015075
7739 MIR 30 not_TE_peak all_peaks 0.1986754967
7740 Alu 85 not_TE_peak all_peaks 0.4166666667
7741 TcMar-Tigger 298 not_TE_peak all_peaks 0.4845528455
7742 <NA> NA not_TE_peak all_peaks NA
7743 MIR 148 TE_peak all_peaks 1.0000000000
7744 L2 93 TE_peak all_peaks 1.0000000000
7745 ERVL-MaLR 253 TE_peak all_peaks 0.7529761905
7746 <NA> NA not_TE_peak all_peaks NA
7747 LTR? 51 not_TE_peak all_peaks 0.2217391304
7748 <NA> NA not_TE_peak all_peaks NA
7749 L2 410 TE_peak all_peaks 0.6925675676
7750 MIR 234 TE_peak all_peaks 0.9397590361
7751 L2 122 TE_peak all_peaks 0.6130653266
7752 TcMar-Tigger 145 TE_peak all_peaks 1.0000000000
7753 hAT-Tip100 103 TE_peak all_peaks 1.0000000000
7754 hAT-Charlie 63 not_TE_peak all_peaks 0.4285714286
7755 TcMar-Tigger 41 not_TE_peak all_peaks 0.4226804124
7756 TcMar-Tigger 267 TE_peak all_peaks 1.0000000000
7757 Simple_repeat 21 not_TE_peak all_peaks 0.3888888889
7758 L2 86 TE_peak all_peaks 1.0000000000
7759 MIR 208 TE_peak all_peaks 1.0000000000
7760 L2 124 TE_peak all_peaks 0.9393939394
7761 L1 101 not_TE_peak all_peaks 0.1502976190
7762 <NA> NA not_TE_peak all_peaks NA
7763 MIR 140 TE_peak all_peaks 1.0000000000
7764 MIR 109 TE_peak all_peaks 0.8257575758
7765 <NA> NA not_TE_peak all_peaks NA
7766 <NA> NA not_TE_peak all_peaks NA
7767 L2 503 TE_peak all_peaks 1.0000000000
7768 <NA> NA not_TE_peak all_peaks NA
7769 L2 72 TE_peak all_peaks 1.0000000000
7770 L2 155 TE_peak all_peaks 1.0000000000
7771 Simple_repeat 32 TE_peak all_peaks 1.0000000000
7772 <NA> NA not_TE_peak all_peaks NA
7773 MIR 166 TE_peak all_peaks 1.0000000000
7774 L1 236 not_TE_peak all_peaks 0.2105263158
7775 L2 126 TE_peak all_peaks 1.0000000000
7776 L2 303 TE_peak all_peaks 1.0000000000
7777 MIR 194 TE_peak all_peaks 1.0000000000
7778 L2 57 TE_peak all_peaks 1.0000000000
7779 MIR 94 not_TE_peak all_peaks 0.4630541872
7780 MIR 74 not_TE_peak all_peaks 0.4404761905
7781 MIR 166 TE_peak all_peaks 1.0000000000
7782 Alu 62 not_TE_peak all_peaks 0.2137931034
7783 MIR 93 TE_peak all_peaks 1.0000000000
7784 <NA> NA not_TE_peak all_peaks NA
7785 <NA> NA not_TE_peak all_peaks NA
7786 Alu 4 not_TE_peak all_peaks 0.0128617363
7787 Simple_repeat 31 TE_peak all_peaks 1.0000000000
7788 MIR 23 not_TE_peak all_peaks 0.1729323308
7789 L1 519 not_TE_peak all_peaks 0.3998459168
7790 hAT-Charlie 230 TE_peak all_peaks 1.0000000000
7791 ERVL-MaLR 296 TE_peak all_peaks 1.0000000000
7792 TcMar-Tigger 60 TE_peak all_peaks 1.0000000000
7793 ERV1 396 TE_peak all_peaks 1.0000000000
7794 MIR 87 TE_peak all_peaks 0.5723684211
7795 MIR 200 TE_peak all_peaks 1.0000000000
7796 MIR 67 not_TE_peak all_peaks 0.4267515924
7797 ERVL-MaLR 249 TE_peak all_peaks 0.7155172414
7798 <NA> NA not_TE_peak all_peaks NA
7799 L1 136 TE_peak all_peaks 0.5171102662
7800 hAT-Charlie 133 TE_peak all_peaks 1.0000000000
7801 L2 222 TE_peak all_peaks 1.0000000000
7802 L2 91 TE_peak all_peaks 1.0000000000
7803 ERVK 664 TE_peak all_peaks 0.6497064579
7804 <NA> NA not_TE_peak all_peaks NA
7805 L2 67 TE_peak all_peaks 0.9710144928
7806 ERVK 538 TE_peak all_peaks 0.5729499468
7807 Simple_repeat 48 TE_peak all_peaks 1.0000000000
7808 L2 80 TE_peak all_peaks 1.0000000000
7809 MIR 146 TE_peak all_peaks 1.0000000000
7810 L1 66 not_TE_peak all_peaks 0.1116751269
7811 TcMar-Tigger 398 TE_peak all_peaks 0.5489655172
7812 MIR 75 TE_peak all_peaks 0.5859375000
7813 <NA> NA not_TE_peak all_peaks NA
7814 CR1 97 not_TE_peak all_peaks 0.4273127753
7815 <NA> NA not_TE_peak all_peaks NA
7816 L2 210 not_TE_peak all_peaks 0.4805491991
7817 <NA> NA not_TE_peak all_peaks NA
7818 <NA> NA not_TE_peak all_peaks NA
7819 MIR 119 TE_peak all_peaks 0.7777777778
7820 CR1 459 TE_peak all_peaks 0.6681222707
7821 MIR 9 not_TE_peak all_peaks 0.0396475771
7822 hAT-Charlie 82 TE_peak all_peaks 1.0000000000
7823 hAT-Charlie 9 not_TE_peak all_peaks 0.0833333333
7824 <NA> NA not_TE_peak all_peaks NA
7825 L2 87 not_TE_peak all_peaks 0.4306930693
7826 Gypsy 102 TE_peak all_peaks 1.0000000000
7827 MIR 57 not_TE_peak all_peaks 0.2651162791
7828 <NA> NA not_TE_peak all_peaks NA
7829 MIR 122 TE_peak all_peaks 0.5893719807
7830 MIR 69 TE_peak all_peaks 1.0000000000
7831 hAT-Blackjack 6 not_TE_peak all_peaks 0.0073710074
7832 <NA> NA not_TE_peak all_peaks NA
7833 MIR 140 TE_peak all_peaks 1.0000000000
7834 L1 121 not_TE_peak all_peaks 0.3063291139
7835 Alu 45 not_TE_peak all_peaks 0.1510067114
7836 CR1 46 TE_peak all_peaks 1.0000000000
7837 MIR 116 TE_peak all_peaks 1.0000000000
7838 MIR 70 TE_peak all_peaks 0.5303030303
7839 MIR 73 TE_peak all_peaks 0.9012345679
7840 hAT-Charlie 68 not_TE_peak all_peaks 0.4822695035
7841 MIR 71 not_TE_peak all_peaks 0.4382716049
7842 hAT-Blackjack 63 TE_peak all_peaks 0.5833333333
7843 MIR 194 TE_peak all_peaks 1.0000000000
7844 MIR 183 TE_peak all_peaks 1.0000000000
7845 <NA> NA not_TE_peak all_peaks NA
7846 Simple_repeat 70 TE_peak all_peaks 1.0000000000
7847 L2 265 TE_peak all_peaks 0.9330985915
7848 DNA 16 not_TE_peak all_peaks 0.1415929204
7849 MIR 197 TE_peak all_peaks 1.0000000000
7850 Simple_repeat 47 TE_peak all_peaks 1.0000000000
7851 <NA> NA not_TE_peak all_peaks NA
7852 hAT-Charlie 55 not_TE_peak all_peaks 0.3038674033
7853 L2 129 TE_peak all_peaks 1.0000000000
7854 L2 29 not_TE_peak all_peaks 0.1374407583
7855 L2 321 TE_peak all_peaks 1.0000000000
7856 <NA> NA not_TE_peak all_peaks NA
7857 <NA> NA not_TE_peak all_peaks NA
7858 MIR 124 TE_peak all_peaks 1.0000000000
7859 MIR 95 not_TE_peak all_peaks 0.4112554113
7860 L2 72 not_TE_peak all_peaks 0.4137931034
7861 MIR 75 TE_peak all_peaks 1.0000000000
7862 <NA> NA not_TE_peak all_peaks NA
7863 MIR 234 TE_peak all_peaks 1.0000000000
7864 <NA> NA not_TE_peak all_peaks NA
7865 L2 111 TE_peak all_peaks 1.0000000000
7866 <NA> NA not_TE_peak all_peaks NA
7867 Alu 200 TE_peak all_peaks 0.7352941176
7868 <NA> NA not_TE_peak all_peaks NA
7869 Simple_repeat 50 TE_peak all_peaks 1.0000000000
7870 Low_complexity 33 TE_peak all_peaks 1.0000000000
7871 <NA> NA not_TE_peak all_peaks NA
7872 Simple_repeat 53 TE_peak all_peaks 1.0000000000
7873 Simple_repeat 41 TE_peak all_peaks 1.0000000000
7874 Alu 243 TE_peak all_peaks 0.8379310345
7875 Simple_repeat 24 TE_peak all_peaks 0.8000000000
7876 Simple_repeat 65 TE_peak all_peaks 1.0000000000
7877 <NA> NA not_TE_peak all_peaks NA
7878 <NA> NA not_TE_peak all_peaks NA
7879 Simple_repeat 70 TE_peak all_peaks 0.6796116505
7880 Simple_repeat 51 TE_peak all_peaks 1.0000000000
7881 Simple_repeat 48 TE_peak all_peaks 1.0000000000
7882 Low_complexity 75 TE_peak all_peaks 1.0000000000
7883 Simple_repeat 18 not_TE_peak all_peaks 0.3214285714
7884 Simple_repeat 45 TE_peak all_peaks 1.0000000000
7885 Simple_repeat 63 TE_peak all_peaks 1.0000000000
7886 <NA> NA not_TE_peak all_peaks NA
7887 L2 149 TE_peak all_peaks 1.0000000000
7888 <NA> NA not_TE_peak all_peaks NA
7889 <NA> NA not_TE_peak all_peaks NA
7890 Alu 38 not_TE_peak all_peaks 0.1262458472
7891 MIR 37 TE_peak all_peaks 1.0000000000
7892 hAT-Charlie 89 not_TE_peak all_peaks 0.4917127072
7893 <NA> NA not_TE_peak all_peaks NA
7894 <NA> NA not_TE_peak all_peaks NA
7895 <NA> NA not_TE_peak all_peaks NA
7896 Low_complexity 61 TE_peak all_peaks 1.0000000000
7897 <NA> NA not_TE_peak all_peaks NA
7898 <NA> NA not_TE_peak all_peaks NA
7899 <NA> NA not_TE_peak all_peaks NA
7900 Alu 218 TE_peak all_peaks 0.7290969900
7901 L2 89 TE_peak all_peaks 1.0000000000
7902 L2 53 not_TE_peak all_peaks 0.1070707071
7903 L2 115 not_TE_peak all_peaks 0.2323232323
7904 L2 97 TE_peak all_peaks 1.0000000000
7905 L2 106 TE_peak all_peaks 1.0000000000
7906 <NA> NA not_TE_peak all_peaks NA
7907 <NA> NA not_TE_peak all_peaks NA
7908 <NA> NA not_TE_peak all_peaks NA
7909 L2 87 not_TE_peak all_peaks 0.2979452055
7910 hAT 283 TE_peak all_peaks 1.0000000000
7911 L2 4 not_TE_peak all_peaks 0.0145454545
7912 L2 82 not_TE_peak all_peaks 0.4315789474
7913 <NA> NA not_TE_peak all_peaks NA
7914 L1 157 TE_peak all_peaks 0.7201834862
7915 L2 353 TE_peak all_peaks 0.9514824798
7916 <NA> NA not_TE_peak all_peaks NA
7917 <NA> NA not_TE_peak all_peaks NA
7918 <NA> NA not_TE_peak all_peaks NA
7919 <NA> NA not_TE_peak all_peaks NA
7920 Simple_repeat 36 TE_peak all_peaks 1.0000000000
7921 Simple_repeat 34 TE_peak all_peaks 1.0000000000
7922 ERVL 539 TE_peak all_peaks 1.0000000000
7923 MIR 145 TE_peak all_peaks 1.0000000000
7924 TcMar-Tigger 32 not_TE_peak all_peaks 0.1495327103
7925 hAT-Charlie 166 TE_peak all_peaks 1.0000000000
7926 MIR 124 TE_peak all_peaks 1.0000000000
7927 ERVL-MaLR 103 not_TE_peak all_peaks 0.3002915452
7928 hAT 233 TE_peak all_peaks 1.0000000000
7929 L1 514 TE_peak all_peaks 0.5365344468
7930 L2 382 TE_peak all_peaks 0.8842592593
7931 Simple_repeat 112 TE_peak all_peaks 1.0000000000
7932 L2 378 TE_peak all_peaks 0.8494382022
7933 Alu 284 TE_peak all_peaks 1.0000000000
7934 Simple_repeat 55 TE_peak all_peaks 1.0000000000
7935 L2 378 TE_peak all_peaks 1.0000000000
7936 ERVL-MaLR 74 not_TE_peak all_peaks 0.1557894737
7937 L2 101 TE_peak all_peaks 0.6778523490
7938 <NA> NA not_TE_peak all_peaks NA
7939 MIR 26 TE_peak all_peaks 1.0000000000
7940 ERVL-MaLR 73 TE_peak all_peaks 1.0000000000
7941 Alu 30 not_TE_peak all_peaks 0.0996677741
7942 Alu 297 TE_peak all_peaks 0.9900000000
7943 Alu 62 not_TE_peak all_peaks 0.2026143791
7944 Alu 213 TE_peak all_peaks 0.8160919540
7945 L2 45 TE_peak all_peaks 1.0000000000
7946 MIR 101 TE_peak all_peaks 0.7537313433
7947 Simple_repeat 62 TE_peak all_peaks 1.0000000000
7948 Simple_repeat 41 TE_peak all_peaks 1.0000000000
7949 L2 140 TE_peak all_peaks 0.8433734940
7950 MIR 187 TE_peak all_peaks 0.8311111111
7951 Simple_repeat 40 TE_peak all_peaks 1.0000000000
7952 <NA> NA not_TE_peak all_peaks NA
7953 L2 54 not_TE_peak all_peaks 0.2713567839
7954 L2 314 TE_peak all_peaks 1.0000000000
7955 Alu 157 TE_peak all_peaks 1.0000000000
7956 Alu 51 TE_peak all_peaks 1.0000000000
7957 snRNA 1 not_TE_peak all_peaks 0.0096153846
7958 ERVL-MaLR 135 TE_peak all_peaks 1.0000000000
7959 ERV1 341 TE_peak all_peaks 0.7967289720
7960 Alu 221 TE_peak all_peaks 0.7620689655
7961 L2 217 TE_peak all_peaks 1.0000000000
7962 Alu 32 not_TE_peak all_peaks 0.1099656357
7963 Alu 198 TE_peak all_peaks 1.0000000000
7964 L2 213 TE_peak all_peaks 1.0000000000
7965 L1 183 not_TE_peak all_peaks 0.3420560748
7966 ERV1 9 not_TE_peak all_peaks 0.0337078652
7967 L2 111 TE_peak all_peaks 1.0000000000
7968 <NA> NA not_TE_peak all_peaks NA
7969 Simple_repeat 26 TE_peak all_peaks 1.0000000000
7970 Simple_repeat 36 TE_peak all_peaks 1.0000000000
7971 <NA> NA not_TE_peak all_peaks NA
7972 Alu 121 not_TE_peak all_peaks 0.4143835616
7973 ERVL-MaLR 208 TE_peak all_peaks 0.9244444444
7974 MIR 119 TE_peak all_peaks 1.0000000000
7975 <NA> NA not_TE_peak all_peaks NA
7976 hAT-Charlie 282 TE_peak all_peaks 1.0000000000
7977 Alu 40 not_TE_peak all_peaks 0.1384083045
7978 Alu 302 TE_peak all_peaks 1.0000000000
7979 Alu 236 TE_peak all_peaks 0.8000000000
7980 Alu 162 TE_peak all_peaks 1.0000000000
7981 Alu 93 TE_peak all_peaks 0.7322834646
7982 CR1 115 not_TE_peak all_peaks 0.4872881356
7983 L2 250 TE_peak all_peaks 1.0000000000
7984 L2 270 TE_peak all_peaks 0.8132530120
7985 Alu 149 TE_peak all_peaks 0.5137931034
7986 <NA> NA not_TE_peak all_peaks NA
7987 Alu 155 TE_peak all_peaks 1.0000000000
7988 Alu 2 not_TE_peak all_peaks 0.0065146580
7989 Alu 174 TE_peak all_peaks 1.0000000000
7990 L1 36 TE_peak all_peaks 0.6545454545
7991 MIR 189 TE_peak all_peaks 0.8552036199
7992 Alu 13 not_TE_peak all_peaks 0.0420711974
7993 <NA> NA not_TE_peak all_peaks NA
7994 L2 187 TE_peak all_peaks 1.0000000000
7995 L2 243 TE_peak all_peaks 1.0000000000
7996 <NA> NA not_TE_peak all_peaks NA
7997 <NA> NA not_TE_peak all_peaks NA
7998 hAT-Charlie 64 not_TE_peak all_peaks 0.3615819209
7999 L2 136 TE_peak all_peaks 1.0000000000
8000 Simple_repeat 44 TE_peak all_peaks 1.0000000000
8001 MIR 190 TE_peak all_peaks 1.0000000000
8002 Low_complexity 46 TE_peak all_peaks 1.0000000000
8003 <NA> NA not_TE_peak all_peaks NA
8004 <NA> NA not_TE_peak all_peaks NA
8005 L2 40 not_TE_peak all_peaks 0.4545454545
8006 <NA> NA not_TE_peak all_peaks NA
8007 <NA> NA not_TE_peak all_peaks NA
8008 MIR 106 TE_peak all_peaks 0.5549738220
8009 hAT-Blackjack 22 not_TE_peak all_peaks 0.1437908497
8010 ERVL 240 TE_peak all_peaks 0.9756097561
8011 ERV1 509 not_TE_peak all_peaks 0.4810964083
8012 ERVL-MaLR 231 not_TE_peak all_peaks 0.4476744186
8013 Alu 9 not_TE_peak all_peaks 0.0298013245
8014 MIR 54 TE_peak all_peaks 0.5567010309
8015 ERVL-MaLR 345 TE_peak all_peaks 1.0000000000
8016 hAT-Charlie 304 not_TE_peak all_peaks 0.2199710564
8017 Alu 289 TE_peak all_peaks 0.9897260274
8018 <NA> NA not_TE_peak all_peaks NA
8019 ERVL-MaLR 195 TE_peak all_peaks 0.5145118734
8020 MIR 143 TE_peak all_peaks 1.0000000000
8021 RTE-X 61 TE_peak all_peaks 0.9384615385
8022 hAT-Tip100 97 TE_peak all_peaks 1.0000000000
8023 Alu 43 not_TE_peak all_peaks 0.1482758621
8024 <NA> NA not_TE_peak all_peaks NA
8025 <NA> NA not_TE_peak all_peaks NA
8026 <NA> NA not_TE_peak all_peaks NA
8027 L2 179 TE_peak all_peaks 0.6485507246
8028 ERVL-MaLR 29 not_TE_peak all_peaks 0.2589285714
8029 <NA> NA not_TE_peak all_peaks NA
8030 ERVL-MaLR 281 TE_peak all_peaks 1.0000000000
8031 Alu 58 not_TE_peak all_peaks 0.2929292929
8032 Alu 82 not_TE_peak all_peaks 0.2538699690
8033 ERVL 160 TE_peak all_peaks 0.7079646018
8034 Simple_repeat 84 TE_peak all_peaks 1.0000000000
8035 MIR 43 not_TE_peak all_peaks 0.2097560976
8036 Simple_repeat 41 TE_peak all_peaks 1.0000000000
8037 ERVL-MaLR 14 not_TE_peak all_peaks 0.0965517241
8038 L2 105 TE_peak all_peaks 0.7094594595
8039 L1 239 TE_peak all_peaks 0.6657381616
8040 Simple_repeat 62 TE_peak all_peaks 1.0000000000
8041 Simple_repeat 49 TE_peak all_peaks 1.0000000000
8042 Simple_repeat 19 not_TE_peak all_peaks 0.1085714286
8043 ERV1 240 not_TE_peak all_peaks 0.3519061584
8044 Simple_repeat 21 TE_peak all_peaks 1.0000000000
8045 L2 248 TE_peak all_peaks 0.6666666667
8046 L2 58 TE_peak all_peaks 1.0000000000
8047 L2 62 TE_peak all_peaks 0.5904761905
8048 L2 671 TE_peak all_peaks 0.7912735849
8049 <NA> NA not_TE_peak all_peaks NA
8050 Alu 145 TE_peak all_peaks 0.5311355311
8051 Simple_repeat 26 TE_peak all_peaks 1.0000000000
8052 MIR 101 TE_peak all_peaks 0.7062937063
8053 ERV1 343 TE_peak all_peaks 0.7921478060
8054 <NA> NA not_TE_peak all_peaks NA
8055 <NA> NA not_TE_peak all_peaks NA
8056 <NA> NA not_TE_peak all_peaks NA
8057 hAT-Charlie 166 TE_peak all_peaks 1.0000000000
8058 L2 71 TE_peak all_peaks 1.0000000000
8059 L2 53 TE_peak all_peaks 1.0000000000
8060 <NA> NA not_TE_peak all_peaks NA
8061 <NA> NA not_TE_peak all_peaks NA
8062 Simple_repeat 39 TE_peak all_peaks 0.7959183673
8063 Simple_repeat 25 TE_peak all_peaks 1.0000000000
8064 <NA> NA not_TE_peak all_peaks NA
8065 <NA> NA not_TE_peak all_peaks NA
8066 <NA> NA not_TE_peak all_peaks NA
8067 Alu 58 not_TE_peak all_peaks 0.2006920415
8068 Alu 156 TE_peak all_peaks 1.0000000000
8069 Simple_repeat 42 TE_peak all_peaks 1.0000000000
8070 Simple_repeat 81 TE_peak all_peaks 1.0000000000
8071 <NA> NA not_TE_peak all_peaks NA
8072 Alu 126 not_TE_peak all_peaks 0.4329896907
8073 Simple_repeat 50 TE_peak all_peaks 1.0000000000
8074 L2 78 TE_peak all_peaks 1.0000000000
8075 Simple_repeat 22 TE_peak all_peaks 1.0000000000
8076 ERVL-MaLR 277 TE_peak all_peaks 0.6756097561
8077 Alu 66 not_TE_peak all_peaks 0.2894736842
8078 TcMar-Mariner 56 TE_peak all_peaks 1.0000000000
8079 MIR 239 TE_peak all_peaks 1.0000000000
8080 LTR? 57 not_TE_peak all_peaks 0.1748466258
8081 <NA> NA not_TE_peak all_peaks NA
8082 <NA> NA not_TE_peak all_peaks NA
8083 MIR 22 not_TE_peak all_peaks 0.0894308943
8084 MIR 51 TE_peak all_peaks 1.0000000000
8085 L2 138 TE_peak all_peaks 1.0000000000
8086 <NA> NA not_TE_peak all_peaks NA
8087 <NA> NA not_TE_peak all_peaks NA
8088 <NA> NA not_TE_peak all_peaks NA
8089 L2 235 TE_peak all_peaks 0.7939189189
8090 <NA> NA not_TE_peak all_peaks NA
8091 Alu 205 TE_peak all_peaks 0.7044673540
8092 L2 95 TE_peak all_peaks 1.0000000000
8093 MIR 26 not_TE_peak all_peaks 0.1300000000
8094 Alu 35 not_TE_peak all_peaks 0.2611940299
8095 L2 188 TE_peak all_peaks 1.0000000000
8096 Simple_repeat 37 TE_peak all_peaks 1.0000000000
8097 tRNA-RTE 106 TE_peak all_peaks 0.9137931034
8098 MIR 11 not_TE_peak all_peaks 0.0533980583
8099 L2 65 not_TE_peak all_peaks 0.4276315789
8100 L2 74 TE_peak all_peaks 0.6166666667
8101 ERVL-MaLR 366 TE_peak all_peaks 0.9631578947
8102 L1 183 TE_peak all_peaks 0.5430267062
8103 MIR 10 not_TE_peak all_peaks 0.0487804878
8104 Alu 304 TE_peak all_peaks 0.9559748428
8105 MIR 158 TE_peak all_peaks 1.0000000000
8106 MIR 232 TE_peak all_peaks 1.0000000000
8107 MIR 112 TE_peak all_peaks 0.7272727273
8108 MIR 63 TE_peak all_peaks 0.8873239437
8109 MIR 101 TE_peak all_peaks 1.0000000000
8110 Simple_repeat 26 TE_peak all_peaks 1.0000000000
8111 Simple_repeat 22 TE_peak all_peaks 1.0000000000
8112 Simple_repeat 19 TE_peak all_peaks 1.0000000000
8113 MIR 153 TE_peak all_peaks 0.8547486034
8114 Alu 167 TE_peak all_peaks 0.5091463415
8115 <NA> NA not_TE_peak all_peaks NA
8116 L2 145 not_TE_peak all_peaks 0.4302670623
8117 MIR 103 TE_peak all_peaks 1.0000000000
8118 MIR 89 not_TE_peak all_peaks 0.3973214286
8119 <NA> NA not_TE_peak all_peaks NA
8120 <NA> NA not_TE_peak all_peaks NA
8121 L2 52 TE_peak all_peaks 0.5473684211
8122 <NA> NA not_TE_peak all_peaks NA
8123 MIR 202 TE_peak all_peaks 1.0000000000
8124 L2 22 not_TE_peak all_peaks 0.3437500000
8125 TcMar-Tigger 622 TE_peak all_peaks 0.5056910569
8126 MIR 21 not_TE_peak all_peaks 0.1544117647
8127 L2 10 not_TE_peak all_peaks 0.0900900901
8128 L1 76 TE_peak all_peaks 1.0000000000
8129 MIR 202 TE_peak all_peaks 1.0000000000
8130 MIR 115 TE_peak all_peaks 1.0000000000
8131 MIR 234 TE_peak all_peaks 1.0000000000
8132 L2 97 TE_peak all_peaks 1.0000000000
8133 MIR 196 TE_peak all_peaks 0.9607843137
8134 Simple_repeat 41 TE_peak all_peaks 1.0000000000
8135 MIR 236 TE_peak all_peaks 1.0000000000
8136 L2 37 not_TE_peak all_peaks 0.3303571429
8137 CR1 121 not_TE_peak all_peaks 0.4006622517
8138 <NA> NA not_TE_peak all_peaks NA
8139 RTE-X 434 not_TE_peak all_peaks 0.4977064220
8140 ERVL-MaLR 319 TE_peak all_peaks 0.6470588235
8141 MIR 57 not_TE_peak all_peaks 0.4071428571
8142 MIR 145 TE_peak all_peaks 0.9354838710
8143 <NA> NA not_TE_peak all_peaks NA
8144 L2 8 not_TE_peak all_peaks 0.0299625468
8145 <NA> NA not_TE_peak all_peaks NA
8146 MIR 73 TE_peak all_peaks 1.0000000000
8147 L2 46 TE_peak all_peaks 1.0000000000
8148 MIR 34 TE_peak all_peaks 1.0000000000
8149 hAT-Charlie 162 TE_peak all_peaks 1.0000000000
8150 MIR 152 TE_peak all_peaks 0.7069767442
8151 <NA> NA not_TE_peak all_peaks NA
8152 MIR 22 not_TE_peak all_peaks 0.1235955056
8153 <NA> NA not_TE_peak all_peaks NA
8154 <NA> NA not_TE_peak all_peaks NA
8155 L2 113 not_TE_peak all_peaks 0.4109090909
8156 <NA> NA not_TE_peak all_peaks NA
8157 <NA> NA not_TE_peak all_peaks NA
8158 L2 223 TE_peak all_peaks 1.0000000000
8159 Simple_repeat 38 TE_peak all_peaks 1.0000000000
8160 L2 369 TE_peak all_peaks 0.7623966942
8161 <NA> NA not_TE_peak all_peaks NA
8162 <NA> NA not_TE_peak all_peaks NA
8163 MIR 45 TE_peak all_peaks 0.7142857143
8164 MIR 70 TE_peak all_peaks 1.0000000000
8165 MIR 76 TE_peak all_peaks 1.0000000000
8166 hAT-Charlie 169 TE_peak all_peaks 1.0000000000
8167 MIR 29 TE_peak all_peaks 0.9666666667
8168 ERVL-MaLR 376 TE_peak all_peaks 0.8973747017
8169 CR1 109 TE_peak all_peaks 1.0000000000
8170 L1 231 not_TE_peak all_peaks 0.3377192982
8171 MIR 51 not_TE_peak all_peaks 0.2786885246
8172 RTE-BovB 52 TE_peak all_peaks 0.5000000000
8173 <NA> NA not_TE_peak all_peaks NA
8174 DNA? 102 TE_peak all_peaks 0.9444444444
8175 MIR 20 not_TE_peak all_peaks 0.1212121212
8176 MIR 49 not_TE_peak all_peaks 0.3602941176
8177 MIR 139 TE_peak all_peaks 0.9084967320
8178 <NA> NA not_TE_peak all_peaks NA
8179 L2 31 not_TE_peak all_peaks 0.4558823529
8180 ERV1 220 not_TE_peak all_peaks 0.3859649123
8181 ERVL 233 TE_peak all_peaks 0.6657142857
8182 MIR 17 not_TE_peak all_peaks 0.2463768116
8183 ERVL 368 TE_peak all_peaks 0.8141592920
8184 <NA> NA not_TE_peak all_peaks NA
8185 <NA> NA not_TE_peak all_peaks NA
8186 MIR 109 TE_peak all_peaks 1.0000000000
8187 MIR 177 TE_peak all_peaks 1.0000000000
8188 L2 10 not_TE_peak all_peaks 0.0362318841
8189 MIR 99 TE_peak all_peaks 1.0000000000
8190 Alu 302 TE_peak all_peaks 0.9587301587
8191 MIR 158 TE_peak all_peaks 1.0000000000
8192 L1 37 TE_peak all_peaks 0.7708333333
8193 L2 256 TE_peak all_peaks 1.0000000000
8194 <NA> NA not_TE_peak all_peaks NA
8195 hAT 151 TE_peak all_peaks 1.0000000000
8196 Alu 125 TE_peak all_peaks 1.0000000000
8197 Alu 229 TE_peak all_peaks 0.7363344051
8198 MIR 37 not_TE_peak all_peaks 0.1601731602
8199 <NA> NA not_TE_peak all_peaks NA
8200 TcMar-Tigger 316 TE_peak all_peaks 0.5755919854
8201 ERVL-MaLR 12 not_TE_peak all_peaks 0.0930232558
8202 ERVL 235 TE_peak all_peaks 0.6973293769
8203 L2 100 TE_peak all_peaks 1.0000000000
8204 L2 234 TE_peak all_peaks 1.0000000000
8205 L2 83 not_TE_peak all_peaks 0.4742857143
8206 CR1 291 TE_peak all_peaks 0.5243243243
8207 MIR 218 TE_peak all_peaks 0.9045643154
8208 ERVL-MaLR 421 TE_peak all_peaks 0.7296360485
8209 ERVL-MaLR 107 TE_peak all_peaks 1.0000000000
8210 ERVL 204 TE_peak all_peaks 0.8429752066
8211 Alu 135 TE_peak all_peaks 0.7714285714
8212 ERVL-MaLR 462 TE_peak all_peaks 0.8369565217
8213 ERVL 98 not_TE_peak all_peaks 0.2882352941
8214 ERVL-MaLR 278 TE_peak all_peaks 1.0000000000
8215 hAT-Tip100 80 TE_peak all_peaks 0.8163265306
8216 Alu 152 not_TE_peak all_peaks 0.4856230032
8217 MIR 103 TE_peak all_peaks 1.0000000000
8218 Low_complexity 8 not_TE_peak all_peaks 0.2424242424
8219 L2 11 not_TE_peak all_peaks 0.0322580645
8220 L2 162 TE_peak all_peaks 1.0000000000
8221 L2 96 TE_peak all_peaks 1.0000000000
8222 Simple_repeat 713 TE_peak all_peaks 1.0000000000
8223 MIR 54 TE_peak all_peaks 1.0000000000
8224 Simple_repeat 59 TE_peak all_peaks 1.0000000000
8225 Simple_repeat 41 TE_peak all_peaks 1.0000000000
8226 L2 60 not_TE_peak all_peaks 0.3571428571
8227 Alu 88 not_TE_peak all_peaks 0.2784810127
8228 ERV1 187 not_TE_peak all_peaks 0.4250000000
8229 MIR 15 not_TE_peak all_peaks 0.0724637681
8230 Simple_repeat 40 TE_peak all_peaks 1.0000000000
8231 RTE-BovB 207 TE_peak all_peaks 0.7089041096
8232 <NA> NA not_TE_peak all_peaks NA
8233 <NA> NA not_TE_peak all_peaks NA
8234 Simple_repeat 72 TE_peak all_peaks 1.0000000000
8235 Simple_repeat 29 TE_peak all_peaks 1.0000000000
8236 L2 63 TE_peak all_peaks 1.0000000000
8237 MIR 84 TE_peak all_peaks 1.0000000000
8238 MIR 193 TE_peak all_peaks 1.0000000000
8239 CR1 33 not_TE_peak all_peaks 0.1130136986
8240 hAT-Charlie 10 not_TE_peak all_peaks 0.0543478261
8241 ERVL 706 TE_peak all_peaks 0.8588807786
8242 L2 120 TE_peak all_peaks 1.0000000000
8243 L2 192 TE_peak all_peaks 1.0000000000
8244 Alu 126 not_TE_peak all_peaks 0.4077669903
8245 <NA> NA not_TE_peak all_peaks NA
8246 <NA> NA not_TE_peak all_peaks NA
8247 <NA> NA not_TE_peak all_peaks NA
8248 <NA> NA not_TE_peak all_peaks NA
8249 CR1 72 TE_peak all_peaks 1.0000000000
8250 MIR 169 TE_peak all_peaks 1.0000000000
8251 L2 174 TE_peak all_peaks 1.0000000000
8252 L2 53 TE_peak all_peaks 1.0000000000
8253 <NA> NA not_TE_peak all_peaks NA
8254 tRNA-RTE 103 TE_peak all_peaks 0.8110236220
8255 MIR 192 TE_peak all_peaks 1.0000000000
8256 L2 86 TE_peak all_peaks 1.0000000000
8257 ERVL 203 not_TE_peak all_peaks 0.4903381643
8258 <NA> NA not_TE_peak all_peaks NA
8259 <NA> NA not_TE_peak all_peaks NA
8260 MIR 135 TE_peak all_peaks 0.9121621622
8261 Alu 98 not_TE_peak all_peaks 0.3344709898
8262 <NA> NA not_TE_peak all_peaks NA
8263 ERVL 42 not_TE_peak all_peaks 0.2295081967
8264 ERVL-MaLR 290 TE_peak all_peaks 0.7474226804
8265 <NA> NA not_TE_peak all_peaks NA
8266 Low_complexity 46 TE_peak all_peaks 1.0000000000
8267 Simple_repeat 36 TE_peak all_peaks 1.0000000000
8268 Simple_repeat 87 TE_peak all_peaks 1.0000000000
8269 MIR 64 TE_peak all_peaks 1.0000000000
8270 L1 32 not_TE_peak all_peaks 0.2406015038
8271 ERVL-MaLR 380 TE_peak all_peaks 1.0000000000
8272 L1 163 TE_peak all_peaks 0.5191082803
8273 L2 33 not_TE_peak all_peaks 0.1793478261
8274 ERVL-MaLR 88 TE_peak all_peaks 1.0000000000
8275 ERVL-MaLR 61 TE_peak all_peaks 1.0000000000
8276 L2 61 not_TE_peak all_peaks 0.3351648352
8277 TcMar-Tigger 337 not_TE_peak all_peaks 0.3243503369
8278 Alu 275 TE_peak all_peaks 0.9046052632
8279 L1 115 TE_peak all_peaks 1.0000000000
8280 <NA> NA not_TE_peak all_peaks NA
8281 L2 56 TE_peak all_peaks 0.7272727273
8282 <NA> NA not_TE_peak all_peaks NA
8283 <NA> NA not_TE_peak all_peaks NA
8284 TcMar-Tigger 11 not_TE_peak all_peaks 0.0341614907
8285 hAT-Tip100 174 TE_peak all_peaks 1.0000000000
8286 L2 254 TE_peak all_peaks 0.6004728132
8287 MIR 224 TE_peak all_peaks 0.9572649573
8288 MIR 76 TE_peak all_peaks 1.0000000000
8289 <NA> NA not_TE_peak all_peaks NA
8290 L2 175 not_TE_peak all_peaks 0.3125000000
8291 L1 118 not_TE_peak all_peaks 0.1771771772
8292 MIR 155 TE_peak all_peaks 0.6798245614
8293 MIR 75 TE_peak all_peaks 0.5357142857
8294 hAT-Charlie 109 not_TE_peak all_peaks 0.3562091503
8295 L2 267 TE_peak all_peaks 0.8165137615
8296 Simple_repeat 73 TE_peak all_peaks 1.0000000000
8297 <NA> NA not_TE_peak all_peaks NA
8298 <NA> NA not_TE_peak all_peaks NA
8299 Simple_repeat 36 not_TE_peak all_peaks 0.1469387755
8300 Simple_repeat 28 not_TE_peak all_peaks 0.4000000000
8301 MIR 229 TE_peak all_peaks 1.0000000000
8302 Simple_repeat 22 TE_peak all_peaks 1.0000000000
8303 Simple_repeat 21 TE_peak all_peaks 1.0000000000
8304 ERVL 289 TE_peak all_peaks 0.6109936575
8305 ERVL 278 TE_peak all_peaks 0.5902335456
8306 L2 101 not_TE_peak all_peaks 0.2797783934
8307 MIR 55 not_TE_peak all_peaks 0.2500000000
8308 ERVL-MaLR 18 not_TE_peak all_peaks 0.1800000000
8309 Simple_repeat 23 TE_peak all_peaks 0.7931034483
8310 Simple_repeat 56 TE_peak all_peaks 1.0000000000
8311 Simple_repeat 27 TE_peak all_peaks 1.0000000000
8312 Simple_repeat 32 TE_peak all_peaks 1.0000000000
8313 Simple_repeat 41 TE_peak all_peaks 1.0000000000
8314 Simple_repeat 20 TE_peak all_peaks 1.0000000000
8315 Simple_repeat 35 TE_peak all_peaks 1.0000000000
8316 L2 182 not_TE_peak all_peaks 0.2782874618
8317 L2 135 TE_peak all_peaks 1.0000000000
8318 L2 112 TE_peak all_peaks 1.0000000000
8319 Alu 299 TE_peak all_peaks 1.0000000000
8320 hAT-Charlie 107 TE_peak all_peaks 1.0000000000
8321 L2 35 not_TE_peak all_peaks 0.3271028037
8322 CR1 121 TE_peak all_peaks 1.0000000000
8323 CR1 62 TE_peak all_peaks 1.0000000000
8324 Alu 46 not_TE_peak all_peaks 0.1559322034
8325 Alu 181 TE_peak all_peaks 1.0000000000
8326 MIR 31 not_TE_peak all_peaks 0.3522727273
8327 ERVK 426 not_TE_peak all_peaks 0.4405377456
8328 <NA> NA not_TE_peak all_peaks NA
8329 Simple_repeat 27 TE_peak all_peaks 1.0000000000
8330 Low_complexity 43 TE_peak all_peaks 1.0000000000
8331 Simple_repeat 37 TE_peak all_peaks 1.0000000000
8332 <NA> NA not_TE_peak all_peaks NA
8333 <NA> NA not_TE_peak all_peaks NA
8334 Alu 64 not_TE_peak all_peaks 0.2269503546
8335 Alu 282 TE_peak all_peaks 1.0000000000
8336 <NA> NA not_TE_peak all_peaks NA
8337 MIR 47 not_TE_peak all_peaks 0.2640449438
8338 ERVL 216 TE_peak all_peaks 1.0000000000
8339 Alu 279 TE_peak all_peaks 0.8857142857
8340 CR1 51 TE_peak all_peaks 1.0000000000
8341 Simple_repeat 88 TE_peak all_peaks 1.0000000000
8342 L2 473 TE_peak all_peaks 1.0000000000
8343 L2 99 TE_peak all_peaks 1.0000000000
8344 <NA> NA not_TE_peak all_peaks NA
8345 L2 123 TE_peak all_peaks 0.8913043478
8346 <NA> NA not_TE_peak all_peaks NA
8347 ERV1 374 TE_peak all_peaks 0.6690518784
8348 L1 133 TE_peak all_peaks 1.0000000000
8349 MIR 192 TE_peak all_peaks 1.0000000000
8350 Simple_repeat 52 TE_peak all_peaks 1.0000000000
8351 L2 67 not_TE_peak all_peaks 0.4589041096
8352 <NA> NA not_TE_peak all_peaks NA
8353 ERVL-MaLR 237 TE_peak all_peaks 0.7719869707
8354 ERVL-MaLR 367 TE_peak all_peaks 0.9267676768
8355 ERVL-MaLR 106 not_TE_peak all_peaks 0.3002832861
8356 Simple_repeat 88 TE_peak all_peaks 1.0000000000
8357 Simple_repeat 24 TE_peak all_peaks 1.0000000000
8358 Low_complexity 62 TE_peak all_peaks 1.0000000000
8359 L2 228 TE_peak all_peaks 0.6666666667
8360 MIR 168 TE_peak all_peaks 0.9940828402
8361 MIR 99 TE_peak all_peaks 1.0000000000
8362 Alu 86 not_TE_peak all_peaks 0.2885906040
8363 <NA> NA not_TE_peak all_peaks NA
8364 tRNA-RTE 171 TE_peak all_peaks 1.0000000000
8365 L2 381 TE_peak all_peaks 0.7243346008
8366 <NA> NA not_TE_peak all_peaks NA
8367 Low_complexity 42 TE_peak all_peaks 1.0000000000
8368 L2 165 TE_peak all_peaks 0.5092592593
8369 L2 234 not_TE_peak all_peaks 0.2843256379
8370 <NA> NA not_TE_peak all_peaks NA
8371 L2 120 TE_peak all_peaks 0.6703910615
8372 L2 191 TE_peak all_peaks 1.0000000000
8373 <NA> NA not_TE_peak all_peaks NA
8374 <NA> NA not_TE_peak all_peaks NA
8375 ERVL 6 not_TE_peak all_peaks 0.0377358491
8376 ERVL 332 TE_peak all_peaks 1.0000000000
8377 L2 50 not_TE_peak all_peaks 0.1091703057
8378 L1 407 not_TE_peak all_peaks 0.0659643436
8379 <NA> NA not_TE_peak all_peaks NA
8380 <NA> NA not_TE_peak all_peaks NA
8381 <NA> NA not_TE_peak all_peaks NA
8382 L1 830 not_TE_peak all_peaks 0.1974310181
8383 <NA> NA not_TE_peak all_peaks NA
8384 ERV1 464 TE_peak all_peaks 1.0000000000
8385 Simple_repeat 35 TE_peak all_peaks 1.0000000000
8386 <NA> NA not_TE_peak all_peaks NA
8387 L2 146 TE_peak all_peaks 0.8957055215
8388 <NA> NA not_TE_peak all_peaks NA
8389 ERVL 200 TE_peak all_peaks 0.9708737864
8390 ERVL 56 not_TE_peak all_peaks 0.1447028424
8391 ERVL 109 not_TE_peak all_peaks 0.3838028169
8392 MIR 208 TE_peak all_peaks 1.0000000000
8393 ERVL 404 not_TE_peak all_peaks 0.2337962963
8394 MIR 156 TE_peak all_peaks 1.0000000000
8395 hAT-Tip100 102 TE_peak all_peaks 1.0000000000
8396 ERVL-MaLR 95 not_TE_peak all_peaks 0.2289156627
8397 <NA> NA not_TE_peak all_peaks NA
8398 Alu 118 TE_peak all_peaks 1.0000000000
8399 Simple_repeat 26 TE_peak all_peaks 1.0000000000
8400 RTE-BovB 154 TE_peak all_peaks 1.0000000000
8401 L2 322 TE_peak all_peaks 1.0000000000
8402 MIR 165 TE_peak all_peaks 0.8418367347
8403 L2 161 TE_peak all_peaks 0.7385321101
8404 MIR 163 TE_peak all_peaks 1.0000000000
8405 <NA> NA not_TE_peak all_peaks NA
8406 <NA> NA not_TE_peak all_peaks NA
8407 <NA> NA not_TE_peak all_peaks NA
8408 ERVL 176 TE_peak all_peaks 1.0000000000
8409 ERVL 40 not_TE_peak all_peaks 0.1801801802
8410 <NA> NA not_TE_peak all_peaks NA
8411 <NA> NA not_TE_peak all_peaks NA
8412 L2 310 TE_peak all_peaks 0.9144542773
8413 L2 131 not_TE_peak all_peaks 0.3218673219
8414 MIR 6 not_TE_peak all_peaks 0.0301507538
8415 Simple_repeat 28 TE_peak all_peaks 1.0000000000
8416 MIR 58 TE_peak all_peaks 0.7733333333
8417 MIR 124 TE_peak all_peaks 1.0000000000
8418 L2 41 not_TE_peak all_peaks 0.3942307692
8419 <NA> NA not_TE_peak all_peaks NA
8420 L2 38 not_TE_peak all_peaks 0.2435897436
8421 L2 22 not_TE_peak all_peaks 0.3235294118
8422 MIR 127 TE_peak all_peaks 1.0000000000
8423 MIR 88 TE_peak all_peaks 1.0000000000
8424 L2 74 TE_peak all_peaks 1.0000000000
8425 MIR 53 not_TE_peak all_peaks 0.2366071429
8426 hAT-Charlie 4 not_TE_peak all_peaks 0.0256410256
8427 MIR 143 TE_peak all_peaks 1.0000000000
8428 L2 92 TE_peak all_peaks 1.0000000000
8429 MIR 166 TE_peak all_peaks 0.7033898305
8430 L2 17 not_TE_peak all_peaks 0.4146341463
8431 <NA> NA not_TE_peak all_peaks NA
8432 <NA> NA not_TE_peak all_peaks NA
8433 DNA 61 not_TE_peak all_peaks 0.3836477987
8434 MIR 124 not_TE_peak all_peaks 0.4979919679
8435 MIR 87 TE_peak all_peaks 1.0000000000
8436 L2 370 not_TE_peak all_peaks 0.2790346908
8437 MIR 87 TE_peak all_peaks 1.0000000000
8438 hAT-Charlie 44 TE_peak all_peaks 1.0000000000
8439 hAT-Charlie 208 not_TE_peak all_peaks 0.1938490214
8440 L2 75 TE_peak all_peaks 1.0000000000
8441 ERVL-MaLR 329 TE_peak all_peaks 0.7528604119
8442 MIR 195 TE_peak all_peaks 1.0000000000
8443 ERVL-MaLR 32 not_TE_peak all_peaks 0.1361702128
8444 L1 94 not_TE_peak all_peaks 0.2946708464
8445 L2 99 TE_peak all_peaks 1.0000000000
8446 L2 133 TE_peak all_peaks 1.0000000000
8447 <NA> NA not_TE_peak all_peaks NA
8448 <NA> NA not_TE_peak all_peaks NA
8449 ERVL-MaLR 269 TE_peak all_peaks 0.7430939227
8450 ERVL-MaLR 176 TE_peak all_peaks 1.0000000000
8451 Simple_repeat 31 TE_peak all_peaks 0.8378378378
8452 hAT-Tip100 169 TE_peak all_peaks 1.0000000000
8453 Alu 44 not_TE_peak all_peaks 0.3165467626
8454 ERV1 325 not_TE_peak all_peaks 0.4032258065
8455 ERV1 323 not_TE_peak all_peaks 0.4007444169
8456 Alu 30 TE_peak all_peaks 1.0000000000
8457 hAT-Charlie 42 not_TE_peak all_peaks 0.2837837838
8458 ERVL 501 not_TE_peak all_peaks 0.3675715334
8459 Simple_repeat 28 TE_peak all_peaks 1.0000000000
8460 Low_complexity 41 TE_peak all_peaks 1.0000000000
8461 MIR 181 TE_peak all_peaks 1.0000000000
8462 L2 50 not_TE_peak all_peaks 0.4761904762
8463 TcMar-Tigger 360 not_TE_peak all_peaks 0.4705882353
8464 MIR 135 TE_peak all_peaks 1.0000000000
8465 MIR 58 TE_peak all_peaks 1.0000000000
8466 MIR 182 TE_peak all_peaks 1.0000000000
8467 MIR 40 TE_peak all_peaks 0.7017543860
8468 <NA> NA not_TE_peak all_peaks NA
8469 ERVL-MaLR 254 TE_peak all_peaks 0.5415778252
8470 MIR 179 TE_peak all_peaks 1.0000000000
8471 MIR 98 TE_peak all_peaks 1.0000000000
8472 MIR 68 TE_peak all_peaks 0.5862068966
8473 MIR 66 not_TE_peak all_peaks 0.2946428571
8474 Simple_repeat 42 TE_peak all_peaks 1.0000000000
8475 ERVL-MaLR 194 not_TE_peak all_peaks 0.4743276284
8476 hAT-Charlie 89 not_TE_peak all_peaks 0.2348284960
8477 <NA> NA not_TE_peak all_peaks NA
8478 MIR 122 TE_peak all_peaks 1.0000000000
8479 <NA> NA not_TE_peak all_peaks NA
8480 Simple_repeat 14 not_TE_peak all_peaks 0.3500000000
8481 L2 73 TE_peak all_peaks 1.0000000000
8482 Alu 37 not_TE_peak all_peaks 0.1250000000
8483 L2 468 TE_peak all_peaks 0.8181818182
8484 L1 28 not_TE_peak all_peaks 0.1284403670
8485 ERVL 199 TE_peak all_peaks 1.0000000000
8486 ERVL 266 TE_peak all_peaks 1.0000000000
8487 L1 137 not_TE_peak all_peaks 0.2952586207
8488 MIR 19 not_TE_peak all_peaks 0.1301369863
8489 hAT-Charlie 91 not_TE_peak all_peaks 0.2926045016
8490 MIR 111 TE_peak all_peaks 1.0000000000
8491 Alu 157 TE_peak all_peaks 0.5198675497
8492 Low_complexity 59 TE_peak all_peaks 1.0000000000
8493 Simple_repeat 48 TE_peak all_peaks 1.0000000000
8494 MIR 97 TE_peak all_peaks 1.0000000000
8495 Simple_repeat 36 TE_peak all_peaks 1.0000000000
8496 <NA> NA not_TE_peak all_peaks NA
8497 Alu 309 TE_peak all_peaks 1.0000000000
8498 TcMar-Tigger 87 TE_peak all_peaks 0.6397058824
8499 Alu 38 not_TE_peak all_peaks 0.1809523810
8500 Alu 188 TE_peak all_peaks 1.0000000000
8501 MIR 84 not_TE_peak all_peaks 0.4444444444
8502 MIR 100 TE_peak all_peaks 1.0000000000
8503 <NA> NA not_TE_peak all_peaks NA
8504 ERV1 103 TE_peak all_peaks 0.6959459459
8505 ERV1 113 not_TE_peak all_peaks 0.0669431280
8506 <NA> NA not_TE_peak all_peaks NA
8507 L2 259 TE_peak all_peaks 0.6888297872
8508 L2 26 TE_peak all_peaks 1.0000000000
8509 MIR 49 TE_peak all_peaks 1.0000000000
8510 Simple_repeat 71 TE_peak all_peaks 1.0000000000
8511 Simple_repeat 65 TE_peak all_peaks 1.0000000000
8512 ERV1 321 TE_peak all_peaks 0.6056603774
8513 MIR 64 TE_peak all_peaks 1.0000000000
8514 L1 147 TE_peak all_peaks 1.0000000000
8515 L1 28 not_TE_peak all_peaks 0.1222707424
8516 L2 111 TE_peak all_peaks 1.0000000000
8517 <NA> NA not_TE_peak all_peaks NA
8518 L2 752 TE_peak all_peaks 0.7932489451
8519 ERV1 480 TE_peak all_peaks 1.0000000000
8520 L2 270 not_TE_peak all_peaks 0.2641878669
8521 MIR 49 not_TE_peak all_peaks 0.2784090909
8522 TcMar-Tigger 30 not_TE_peak all_peaks 0.0952380952
8523 hAT-Charlie 48 not_TE_peak all_peaks 0.4660194175
8524 MIR 152 TE_peak all_peaks 1.0000000000
8525 Simple_repeat 17 TE_peak all_peaks 1.0000000000
8526 Simple_repeat 62 TE_peak all_peaks 1.0000000000
8527 Simple_repeat 81 TE_peak all_peaks 1.0000000000
8528 Simple_repeat 25 TE_peak all_peaks 1.0000000000
8529 MIR 89 TE_peak all_peaks 1.0000000000
8530 MIR 39 not_TE_peak all_peaks 0.2437500000
8531 L2 404 TE_peak all_peaks 0.6977547496
8532 L2 210 TE_peak all_peaks 1.0000000000
8533 ERVL-MaLR 67 not_TE_peak all_peaks 0.2175324675
8534 MIR 121 TE_peak all_peaks 0.8642857143
8535 MIR 186 TE_peak all_peaks 1.0000000000
8536 MIR 224 TE_peak all_peaks 0.9739130435
8537 MIR 78 TE_peak all_peaks 1.0000000000
8538 MIR 101 TE_peak all_peaks 0.5343915344
8539 L2 66 TE_peak all_peaks 1.0000000000
8540 <NA> NA not_TE_peak all_peaks NA
8541 MIR 157 TE_peak all_peaks 1.0000000000
8542 ERV1 357 TE_peak all_peaks 0.7677419355
8543 Alu 299 TE_peak all_peaks 1.0000000000
8544 ERV1 49 not_TE_peak all_peaks 0.2578947368
8545 Alu 100 not_TE_peak all_peaks 0.3378378378
8546 <NA> NA not_TE_peak all_peaks NA
8547 MIR 12 not_TE_peak all_peaks 0.1558441558
8548 L2 367 TE_peak all_peaks 0.6684881603
8549 <NA> NA not_TE_peak all_peaks NA
8550 <NA> NA not_TE_peak all_peaks NA
8551 L2 140 not_TE_peak all_peaks 0.2000000000
8552 <NA> NA not_TE_peak all_peaks NA
8553 hAT-Charlie 140 TE_peak all_peaks 0.6896551724
8554 Alu 97 not_TE_peak all_peaks 0.3356401384
8555 hAT-Charlie 54 not_TE_peak all_peaks 0.2007434944
8556 MIR 53 not_TE_peak all_peaks 0.3812949640
8557 L1 290 not_TE_peak all_peaks 0.4777594728
8558 Alu 122 not_TE_peak all_peaks 0.3973941368
8559 MIR 16 not_TE_peak all_peaks 0.1250000000
8560 MIR 28 TE_peak all_peaks 1.0000000000
8561 MIR 65 not_TE_peak all_peaks 0.4362416107
8562 MIR 101 TE_peak all_peaks 0.5549450549
8563 L2 34 TE_peak all_peaks 1.0000000000
8564 Alu 79 not_TE_peak all_peaks 0.4488636364
8565 Simple_repeat 30 TE_peak all_peaks 1.0000000000
8566 <NA> NA not_TE_peak all_peaks NA
8567 <NA> NA not_TE_peak all_peaks NA
8568 MIR 119 TE_peak all_peaks 0.5265486726
8569 <NA> NA not_TE_peak all_peaks NA
8570 Simple_repeat 42 TE_peak all_peaks 1.0000000000
8571 L2 49 not_TE_peak all_peaks 0.1212871287
8572 MIR 143 TE_peak all_peaks 0.8666666667
8573 L2 102 TE_peak all_peaks 0.8500000000
8574 Simple_repeat 22 TE_peak all_peaks 1.0000000000
8575 MIR 193 TE_peak all_peaks 1.0000000000
8576 Simple_repeat 43 TE_peak all_peaks 1.0000000000
8577 Simple_repeat 41 TE_peak all_peaks 1.0000000000
8578 L2 69 TE_peak all_peaks 0.7752808989
8579 L2 86 not_TE_peak all_peaks 0.1345852895
8580 ERVL-MaLR 245 TE_peak all_peaks 0.8448275862
8581 MIR 5 not_TE_peak all_peaks 0.0239234450
8582 MIR 19 not_TE_peak all_peaks 0.4523809524
8583 MIR 91 TE_peak all_peaks 1.0000000000
8584 <NA> NA not_TE_peak all_peaks NA
8585 Simple_repeat 56 TE_peak all_peaks 1.0000000000
8586 Simple_repeat 55 TE_peak all_peaks 1.0000000000
8587 L2 67 TE_peak all_peaks 1.0000000000
8588 L2 292 TE_peak all_peaks 0.8613569322
8589 Alu 15 not_TE_peak all_peaks 0.0473186120
8590 L2 98 TE_peak all_peaks 1.0000000000
8591 MIR 43 TE_peak all_peaks 0.7166666667
8592 MIR 152 TE_peak all_peaks 0.8636363636
8593 ERVL 68 TE_peak all_peaks 0.7391304348
8594 MIR 39 not_TE_peak all_peaks 0.1959798995
8595 <NA> NA not_TE_peak all_peaks NA
8596 MIR 111 not_TE_peak all_peaks 0.4404761905
8597 <NA> NA not_TE_peak all_peaks NA
8598 L2 6 not_TE_peak all_peaks 0.0967741935
8599 L2 103 TE_peak all_peaks 1.0000000000
8600 Alu 252 TE_peak all_peaks 0.8600682594
8601 <NA> NA not_TE_peak all_peaks NA
8602 <NA> NA not_TE_peak all_peaks NA
8603 <NA> NA not_TE_peak all_peaks NA
8604 hAT-Charlie 79 TE_peak all_peaks 1.0000000000
8605 hAT-Charlie 86 TE_peak all_peaks 0.9052631579
8606 MIR 83 TE_peak all_peaks 1.0000000000
8607 <NA> NA not_TE_peak all_peaks NA
8608 Simple_repeat 28 TE_peak all_peaks 0.5957446809
8609 ERV1 194 TE_peak all_peaks 1.0000000000
8610 MIR 228 TE_peak all_peaks 1.0000000000
8611 MIR 49 TE_peak all_peaks 1.0000000000
8612 hAT-Charlie 143 TE_peak all_peaks 1.0000000000
8613 L2 633 TE_peak all_peaks 0.6459183673
8614 <NA> NA not_TE_peak all_peaks NA
8615 MIR 160 TE_peak all_peaks 1.0000000000
8616 Simple_repeat 25 TE_peak all_peaks 1.0000000000
8617 MIR 140 TE_peak all_peaks 0.7407407407
8618 MIR 96 TE_peak all_peaks 1.0000000000
8619 hAT-Charlie 139 TE_peak all_peaks 1.0000000000
8620 MIR 145 TE_peak all_peaks 0.8682634731
8621 Simple_repeat 48 TE_peak all_peaks 1.0000000000
8622 Simple_repeat 60 TE_peak all_peaks 1.0000000000
8623 Simple_repeat 35 TE_peak all_peaks 1.0000000000
8624 Simple_repeat 31 TE_peak all_peaks 1.0000000000
8625 <NA> NA not_TE_peak all_peaks NA
8626 L2 66 not_TE_peak all_peaks 0.4714285714
8627 hAT-Charlie 180 TE_peak all_peaks 1.0000000000
8628 MIR 187 TE_peak all_peaks 1.0000000000
8629 ERVL-MaLR 93 TE_peak all_peaks 0.8532110092
8630 MIR 77 TE_peak all_peaks 1.0000000000
8631 L2 73 TE_peak all_peaks 1.0000000000
8632 Simple_repeat 10 not_TE_peak all_peaks 0.1886792453
8633 L2 120 TE_peak all_peaks 1.0000000000
8634 L2 52 TE_peak all_peaks 0.6046511628
8635 L2 284 TE_peak all_peaks 0.6439909297
8636 MIR 117 TE_peak all_peaks 0.5625000000
8637 Simple_repeat 25 TE_peak all_peaks 1.0000000000
8638 ERVL 457 TE_peak all_peaks 0.9785867238
8639 ERVL 563 TE_peak all_peaks 0.9352159468
8640 ERVL-MaLR 57 not_TE_peak all_peaks 0.1425000000
8641 L2 173 not_TE_peak all_peaks 0.2079326923
8642 L2 142 TE_peak all_peaks 1.0000000000
8643 MIR 112 TE_peak all_peaks 0.5863874346
8644 <NA> NA not_TE_peak all_peaks NA
8645 <NA> NA not_TE_peak all_peaks NA
8646 L2 232 TE_peak all_peaks 1.0000000000
8647 <NA> NA not_TE_peak all_peaks NA
8648 ERVL 95 TE_peak all_peaks 0.5163043478
8649 CR1 87 TE_peak all_peaks 1.0000000000
8650 hAT-Tip100 182 TE_peak all_peaks 1.0000000000
8651 <NA> NA not_TE_peak all_peaks NA
8652 ERVL 14 not_TE_peak all_peaks 0.0933333333
8653 MIR 119 TE_peak all_peaks 1.0000000000
8654 MIR 107 TE_peak all_peaks 1.0000000000
8655 <NA> NA not_TE_peak all_peaks NA
8656 MIR 214 TE_peak all_peaks 1.0000000000
8657 Alu 236 TE_peak all_peaks 0.8000000000
8658 hAT-Charlie 73 not_TE_peak all_peaks 0.3273542601
8659 TcMar-Tigger 124 TE_peak all_peaks 0.8157894737
8660 <NA> NA not_TE_peak all_peaks NA
8661 <NA> NA not_TE_peak all_peaks NA
8662 <NA> NA not_TE_peak all_peaks NA
8663 <NA> NA not_TE_peak all_peaks NA
8664 MIR 60 TE_peak all_peaks 1.0000000000
8665 <NA> NA not_TE_peak all_peaks NA
8666 Simple_repeat 22 TE_peak all_peaks 1.0000000000
8667 <NA> NA not_TE_peak all_peaks NA
8668 MIR 25 not_TE_peak all_peaks 0.1054852321
8669 L2 64 TE_peak all_peaks 0.8000000000
8670 hAT-Charlie 74 not_TE_peak all_peaks 0.2208955224
8671 ERVL 369 TE_peak all_peaks 1.0000000000
8672 <NA> NA not_TE_peak all_peaks NA
8673 CR1 5 not_TE_peak all_peaks 0.0357142857
8674 L2 48 not_TE_peak all_peaks 0.2580645161
8675 L2 123 TE_peak all_peaks 1.0000000000
8676 CR1 70 not_TE_peak all_peaks 0.1897018970
8677 Simple_repeat 35 TE_peak all_peaks 1.0000000000
8678 RTE-BovB 208 TE_peak all_peaks 1.0000000000
8679 Simple_repeat 28 TE_peak all_peaks 1.0000000000
8680 <NA> NA not_TE_peak all_peaks NA
8681 <NA> NA not_TE_peak all_peaks NA
8682 <NA> NA not_TE_peak all_peaks NA
8683 Simple_repeat 44 TE_peak all_peaks 1.0000000000
8684 Low_complexity 75 TE_peak all_peaks 1.0000000000
8685 Simple_repeat 26 TE_peak all_peaks 1.0000000000
8686 Simple_repeat 37 TE_peak all_peaks 1.0000000000
8687 Simple_repeat 63 TE_peak all_peaks 1.0000000000
8688 TcMar-Tigger 174 TE_peak all_peaks 0.5117647059
8689 ERVL-MaLR 164 TE_peak all_peaks 0.7130434783
8690 MIR 47 TE_peak all_peaks 0.5595238095
8691 <NA> NA not_TE_peak all_peaks NA
8692 MIR 22 not_TE_peak all_peaks 0.2268041237
8693 Simple_repeat 39 TE_peak all_peaks 1.0000000000
8694 L2 300 not_TE_peak all_peaks 0.3891050584
8695 Simple_repeat 37 TE_peak all_peaks 1.0000000000
8696 <NA> NA not_TE_peak all_peaks NA
8697 ERVL-MaLR 239 TE_peak all_peaks 0.6459459459
8698 MIR 111 TE_peak all_peaks 1.0000000000
8699 MIR 35 not_TE_peak all_peaks 0.1785714286
8700 TcMar-Tigger 101 TE_peak all_peaks 1.0000000000
8701 MIR 88 TE_peak all_peaks 0.8301886792
8702 MIR 64 TE_peak all_peaks 1.0000000000
8703 <NA> NA not_TE_peak all_peaks NA
8704 ERVL-MaLR 166 TE_peak all_peaks 0.7345132743
8705 ERV1 395 TE_peak all_peaks 0.6200941915
8706 MIR 94 TE_peak all_peaks 0.6482758621
8707 L2 130 TE_peak all_peaks 1.0000000000
8708 hAT-Charlie 207 TE_peak all_peaks 1.0000000000
8709 ERVL-MaLR 241 TE_peak all_peaks 0.8197278912
8710 L2 6 not_TE_peak all_peaks 0.0140845070
8711 Simple_repeat 36 TE_peak all_peaks 1.0000000000
8712 Simple_repeat 37 TE_peak all_peaks 1.0000000000
8713 ERVL-MaLR 122 TE_peak all_peaks 1.0000000000
8714 <NA> NA not_TE_peak all_peaks NA
8715 MIR 225 TE_peak all_peaks 1.0000000000
8716 ERVL-MaLR 464 TE_peak all_peaks 1.0000000000
8717 <NA> NA not_TE_peak all_peaks NA
8718 L2 51 not_TE_peak all_peaks 0.0524691358
8719 L2 219 TE_peak all_peaks 1.0000000000
8720 MIR 219 TE_peak all_peaks 1.0000000000
8721 Simple_repeat 35 TE_peak all_peaks 1.0000000000
8722 <NA> NA not_TE_peak all_peaks NA
8723 ERVL-MaLR 10 not_TE_peak all_peaks 0.0209643606
8724 ERVL 230 TE_peak all_peaks 0.5943152455
8725 L2 127 TE_peak all_peaks 1.0000000000
8726 L1 462 TE_peak all_peaks 1.0000000000
8727 L2 150 TE_peak all_peaks 1.0000000000
8728 L1 565 not_TE_peak all_peaks 0.2947313511
8729 ERVL-MaLR 202 TE_peak all_peaks 0.7038327526
8730 MIR 147 TE_peak all_peaks 1.0000000000
8731 MIR 142 TE_peak all_peaks 0.9726027397
8732 L2 2 not_TE_peak all_peaks 0.0044052863
8733 ERV1 566 TE_peak all_peaks 1.0000000000
8734 hAT-Charlie 87 not_TE_peak all_peaks 0.3883928571
8735 MIR 161 TE_peak all_peaks 1.0000000000
8736 ERVL 137 not_TE_peak all_peaks 0.3722826087
8737 L1 891 not_TE_peak all_peaks 0.3380121396
8738 L2 213 TE_peak all_peaks 0.8949579832
8739 ERVL 90 TE_peak all_peaks 1.0000000000
8740 ERV1 186 TE_peak all_peaks 0.9073170732
8741 ERVL 58 not_TE_peak all_peaks 0.1269146608
8742 ERV1 106 not_TE_peak all_peaks 0.1518624642
8743 Simple_repeat 16 TE_peak all_peaks 1.0000000000
8744 Simple_repeat 44 TE_peak all_peaks 1.0000000000
8745 Simple_repeat 45 TE_peak all_peaks 1.0000000000
8746 Simple_repeat 45 TE_peak all_peaks 1.0000000000
8747 hAT-Charlie 66 TE_peak all_peaks 1.0000000000
8748 L1 319 TE_peak all_peaks 1.0000000000
8749 ERVL-MaLR 82 not_TE_peak all_peaks 0.1938534279
8750 ERV1 200 TE_peak all_peaks 0.9302325581
8751 ERV1 122 not_TE_peak all_peaks 0.4784313725
8752 <NA> NA not_TE_peak all_peaks NA
8753 ERVL 227 TE_peak all_peaks 0.5159090909
8754 L2 168 TE_peak all_peaks 1.0000000000
8755 ERVL-MaLR 95 not_TE_peak all_peaks 0.2588555858
8756 ERVL? 304 TE_peak all_peaks 1.0000000000
8757 L2 55 not_TE_peak all_peaks 0.4044117647
8758 TcMar-Tigger 328 TE_peak all_peaks 0.5815602837
8759 L1 160 TE_peak all_peaks 1.0000000000
8760 L2 501 TE_peak all_peaks 0.7500000000
8761 L2 104 TE_peak all_peaks 1.0000000000
8762 ERVL-MaLR 51 not_TE_peak all_peaks 0.1424581006
8763 ERVL 120 not_TE_peak all_peaks 0.2823529412
8764 MIR 125 TE_peak all_peaks 0.8064516129
8765 <NA> NA not_TE_peak all_peaks NA
8766 <NA> NA not_TE_peak all_peaks NA
8767 <NA> NA not_TE_peak all_peaks NA
8768 <NA> NA not_TE_peak all_peaks NA
8769 CR1 2 not_TE_peak all_peaks 0.0338983051
8770 Alu 143 TE_peak all_peaks 0.5257352941
8771 <NA> NA not_TE_peak all_peaks NA
8772 <NA> NA not_TE_peak all_peaks NA
8773 TcMar-Tigger 66 TE_peak all_peaks 0.7586206897
8774 TcMar-Tigger 181 TE_peak all_peaks 0.6284722222
8775 MIR 36 not_TE_peak all_peaks 0.3050847458
8776 L2 99 TE_peak all_peaks 1.0000000000
8777 Alu 96 not_TE_peak all_peaks 0.3137254902
8778 <NA> NA not_TE_peak all_peaks NA
8779 Simple_repeat 52 TE_peak all_peaks 1.0000000000
8780 Simple_repeat 47 TE_peak all_peaks 1.0000000000
8781 <NA> NA not_TE_peak all_peaks NA
8782 L1 230 not_TE_peak all_peaks 0.2323232323
8783 Alu 275 TE_peak all_peaks 0.9166666667
8784 TcMar-Tigger 278 TE_peak all_peaks 0.8373493976
8785 Alu 66 not_TE_peak all_peaks 0.2237288136
8786 L2 70 TE_peak all_peaks 1.0000000000
8787 L2 77 not_TE_peak all_peaks 0.4162162162
8788 L2 97 TE_peak all_peaks 0.9150943396
8789 ERV1 580 not_TE_peak all_peaks 0.3706070288
8790 ERV1 134 not_TE_peak all_peaks 0.2388591800
8791 ERV1 334 TE_peak all_peaks 0.7713625866
8792 <NA> NA not_TE_peak all_peaks NA
8793 Alu 114 not_TE_peak all_peaks 0.3762376238
8794 L1 372 TE_peak all_peaks 0.8691588785
8795 Simple_repeat 29 TE_peak all_peaks 1.0000000000
8796 Alu 163 TE_peak all_peaks 0.5000000000
8797 ERVL-MaLR 436 TE_peak all_peaks 1.0000000000
8798 ERVK 26 not_TE_peak all_peaks 0.0266666667
8799 ERVK 602 TE_peak all_peaks 0.6174358974
8800 ERVL-MaLR 140 TE_peak all_peaks 0.6008583691
8801 L1 191 TE_peak all_peaks 1.0000000000
8802 ERVL-MaLR 152 not_TE_peak all_peaks 0.4010554090
8803 hAT-Blackjack 188 TE_peak all_peaks 1.0000000000
8804 Alu 121 TE_peak all_peaks 0.8581560284
8805 MIR 152 TE_peak all_peaks 1.0000000000
8806 Simple_repeat 45 TE_peak all_peaks 1.0000000000
8807 Alu 251 TE_peak all_peaks 0.8122977346
8808 Simple_repeat 19 TE_peak all_peaks 1.0000000000
8809 ERVL-MaLR 178 not_TE_peak all_peaks 0.4395061728
8810 L2 133 TE_peak all_peaks 1.0000000000
8811 <NA> NA not_TE_peak all_peaks NA
8812 <NA> NA not_TE_peak all_peaks NA
8813 ERVL-MaLR 220 TE_peak all_peaks 0.5759162304
8814 L1 214 not_TE_peak all_peaks 0.2183673469
8815 L1 282 TE_peak all_peaks 1.0000000000
8816 L1 9 not_TE_peak all_peaks 0.0099337748
8817 ERV1 568 TE_peak all_peaks 0.7706919946
8818 L1 399 not_TE_peak all_peaks 0.3119624707
8819 <NA> NA not_TE_peak all_peaks NA
8820 Simple_repeat 24 TE_peak all_peaks 1.0000000000
8821 <NA> NA not_TE_peak all_peaks NA
8822 <NA> NA not_TE_peak all_peaks NA
8823 tRNA-Deu 102 TE_peak all_peaks 1.0000000000
8824 L2 194 TE_peak all_peaks 0.5558739255
8825 TcMar-Tigger 40 TE_peak all_peaks 1.0000000000
8826 <NA> NA not_TE_peak all_peaks NA
8827 ERVL 193 not_TE_peak all_peaks 0.3844621514
8828 MIR 80 TE_peak all_peaks 0.7407407407
8829 MIR 80 TE_peak all_peaks 1.0000000000
8830 L2 445 TE_peak all_peaks 0.9270833333
8831 MIR 58 TE_peak all_peaks 1.0000000000
8832 ERVL-MaLR 86 TE_peak all_peaks 1.0000000000
8833 ERVL-MaLR 118 TE_peak all_peaks 1.0000000000
8834 L2 151 TE_peak all_peaks 0.6863636364
8835 <NA> NA not_TE_peak all_peaks NA
8836 Alu 160 TE_peak all_peaks 0.5211726384
8837 L1 117 TE_peak all_peaks 1.0000000000
8838 hAT-Charlie 139 TE_peak all_peaks 1.0000000000
8839 <NA> NA not_TE_peak all_peaks NA
8840 Simple_repeat 50 TE_peak all_peaks 1.0000000000
8841 <NA> NA not_TE_peak all_peaks NA
8842 Alu 151 TE_peak all_peaks 0.8483146067
8843 <NA> NA not_TE_peak all_peaks NA
8844 hAT-Tip100 437 not_TE_peak all_peaks 0.2717661692
8845 <NA> NA not_TE_peak all_peaks NA
8846 <NA> NA not_TE_peak all_peaks NA
8847 MIR 54 not_TE_peak all_peaks 0.2231404959
8848 ERVL 375 TE_peak all_peaks 0.8029978587
8849 ERVL 140 TE_peak all_peaks 1.0000000000
8850 ERVL-MaLR 462 TE_peak all_peaks 0.6209677419
8851 ERVL-MaLR 76 TE_peak all_peaks 1.0000000000
8852 <NA> NA not_TE_peak all_peaks NA
8853 L2 276 TE_peak all_peaks 1.0000000000
8854 ERVL-MaLR 266 TE_peak all_peaks 1.0000000000
8855 L2 261 TE_peak all_peaks 0.5437500000
8856 <NA> NA not_TE_peak all_peaks NA
8857 MIR 139 TE_peak all_peaks 0.8373493976
8858 <NA> NA not_TE_peak all_peaks NA
8859 MIR 144 TE_peak all_peaks 1.0000000000
8860 <NA> NA not_TE_peak all_peaks NA
8861 hAT-Charlie 137 TE_peak all_peaks 1.0000000000
8862 MIR 181 TE_peak all_peaks 1.0000000000
8863 ERVL-MaLR 85 not_TE_peak all_peaks 0.2724358974
8864 L2 20 not_TE_peak all_peaks 0.0514138817
8865 RTE-BovB 198 TE_peak all_peaks 0.5772594752
8866 Simple_repeat 22 TE_peak all_peaks 1.0000000000
8867 ERVL-MaLR 164 not_TE_peak all_peaks 0.4823529412
8868 MIR 177 TE_peak all_peaks 1.0000000000
8869 CR1 11 not_TE_peak all_peaks 0.0839694656
8870 MIR 205 TE_peak all_peaks 1.0000000000
8871 <NA> NA not_TE_peak all_peaks NA
8872 <NA> NA not_TE_peak all_peaks NA
8873 ERV1 405 TE_peak all_peaks 0.7655954631
8874 <NA> NA not_TE_peak all_peaks NA
8875 L2 65 not_TE_peak all_peaks 0.2579365079
8876 <NA> NA not_TE_peak all_peaks NA
8877 Simple_repeat 33 TE_peak all_peaks 1.0000000000
8878 L1 180 not_TE_peak all_peaks 0.2252816020
8879 Simple_repeat 33 TE_peak all_peaks 1.0000000000
8880 Simple_repeat 48 TE_peak all_peaks 1.0000000000
8881 Simple_repeat 23 TE_peak all_peaks 1.0000000000
8882 Simple_repeat 81 TE_peak all_peaks 1.0000000000
8883 Simple_repeat 43 TE_peak all_peaks 1.0000000000
8884 Low_complexity 74 TE_peak all_peaks 1.0000000000
8885 <NA> NA not_TE_peak all_peaks NA
8886 hAT-Tip100 356 TE_peak all_peaks 0.9780219780
8887 <NA> NA not_TE_peak all_peaks NA
8888 hAT-Ac 2 not_TE_peak all_peaks 0.0256410256
8889 ERVL 378 TE_peak all_peaks 0.8325991189
8890 L1 84 not_TE_peak all_peaks 0.2288828338
8891 L2 205 TE_peak all_peaks 1.0000000000
8892 Alu 81 not_TE_peak all_peaks 0.2571428571
8893 ERVL 433 TE_peak all_peaks 0.7029220779
8894 ERV1 35 not_TE_peak all_peaks 0.3153153153
8895 L1 827 TE_peak all_peaks 0.6232102487
8896 <NA> NA not_TE_peak all_peaks NA
8897 L2 348 TE_peak all_peaks 0.6468401487
8898 ERV1 455 TE_peak all_peaks 0.7647058824
8899 Gypsy 133 TE_peak all_peaks 0.5175097276
8900 Gypsy 92 TE_peak all_peaks 1.0000000000
8901 Simple_repeat 36 TE_peak all_peaks 1.0000000000
8902 <NA> NA not_TE_peak all_peaks NA
8903 <NA> NA not_TE_peak all_peaks NA
8904 <NA> NA not_TE_peak all_peaks NA
8905 <NA> NA not_TE_peak all_peaks NA
8906 ERV1 397 TE_peak all_peaks 0.7504725898
8907 ERVL-MaLR 92 TE_peak all_peaks 1.0000000000
8908 <NA> NA not_TE_peak all_peaks NA
8909 MIR 132 TE_peak all_peaks 1.0000000000
8910 <NA> NA not_TE_peak all_peaks NA
8911 L2 66 TE_peak all_peaks 0.5840707965
8912 <NA> NA not_TE_peak all_peaks NA
8913 MIR 64 not_TE_peak all_peaks 0.2895927602
8914 hAT-Charlie 149 TE_peak all_peaks 0.9551282051
8915 <NA> NA not_TE_peak all_peaks NA
8916 L1 179 not_TE_peak all_peaks 0.2571839080
8917 Alu 263 TE_peak all_peaks 0.8915254237
8918 Alu 288 TE_peak all_peaks 0.9350649351
8919 ERVL-MaLR 288 TE_peak all_peaks 0.7461139896
8920 Alu 117 TE_peak all_peaks 0.8602941176
8921 <NA> NA not_TE_peak all_peaks NA
8922 CR1 41 TE_peak all_peaks 1.0000000000
8923 <NA> NA not_TE_peak all_peaks NA
8924 5S-Deu-L2 246 TE_peak all_peaks 1.0000000000
8925 <NA> NA not_TE_peak all_peaks NA
8926 ERVL-MaLR 238 TE_peak all_peaks 0.5118279570
8927 L2 162 TE_peak all_peaks 1.0000000000
8928 ERVL 323 TE_peak all_peaks 1.0000000000
8929 MIR 10 not_TE_peak all_peaks 0.0438596491
8930 <NA> NA not_TE_peak all_peaks NA
8931 <NA> NA not_TE_peak all_peaks NA
8932 <NA> NA not_TE_peak all_peaks NA
8933 ERV1 286 not_TE_peak all_peaks 0.1700356718
8934 ERVL 68 TE_peak all_peaks 1.0000000000
8935 Low_complexity 194 TE_peak all_peaks 1.0000000000
8936 ERV1 89 not_TE_peak all_peaks 0.0595716198
8937 ERVL-MaLR 198 TE_peak all_peaks 0.8722466960
8938 Alu 130 not_TE_peak all_peaks 0.4452054795
8939 <NA> NA not_TE_peak all_peaks NA
8940 PiggyBac 139 TE_peak all_peaks 1.0000000000
8941 MIR 92 not_TE_peak all_peaks 0.3948497854
8942 L1 90 TE_peak all_peaks 1.0000000000
8943 Simple_repeat 50 TE_peak all_peaks 1.0000000000
8944 MIR 55 TE_peak all_peaks 1.0000000000
8945 CR1 172 TE_peak all_peaks 1.0000000000
8946 <NA> NA not_TE_peak all_peaks NA
8947 Simple_repeat 29 TE_peak all_peaks 0.6904761905
8948 MIR 4 not_TE_peak all_peaks 0.0219780220
8949 <NA> NA not_TE_peak all_peaks NA
8950 MIR 64 not_TE_peak all_peaks 0.3350785340
8951 L2 74 TE_peak all_peaks 1.0000000000
8952 Unknown 144 TE_peak all_peaks 1.0000000000
8953 L2 197 TE_peak all_peaks 0.6888111888
8954 <NA> NA not_TE_peak all_peaks NA
8955 L2 297 not_TE_peak all_peaks 0.1622950820
8956 L2 175 TE_peak all_peaks 0.7847533632
8957 TcMar-Tigger 365 not_TE_peak all_peaks 0.3650000000
8958 <NA> NA not_TE_peak all_peaks NA
8959 TcMar-Tigger 254 TE_peak all_peaks 0.9548872180
8960 Simple_repeat 35 TE_peak all_peaks 1.0000000000
8961 Low_complexity 54 TE_peak all_peaks 0.5400000000
8962 Simple_repeat 41 TE_peak all_peaks 1.0000000000
8963 L2 263 TE_peak all_peaks 1.0000000000
8964 L2 358 TE_peak all_peaks 0.9889502762
8965 <NA> NA not_TE_peak all_peaks NA
8966 MIR 37 not_TE_peak all_peaks 0.2163742690
8967 MIR 225 TE_peak all_peaks 1.0000000000
8968 L2 199 not_TE_peak all_peaks 0.2230941704
8969 Simple_repeat 17 TE_peak all_peaks 1.0000000000
8970 Low_complexity 74 TE_peak all_peaks 1.0000000000
8971 hAT-Charlie 163 TE_peak all_peaks 1.0000000000
8972 CR1 97 TE_peak all_peaks 0.7637795276
8973 <NA> NA not_TE_peak all_peaks NA
8974 hAT-Tip100 122 TE_peak all_peaks 1.0000000000
8975 Low_complexity 47 TE_peak all_peaks 1.0000000000
8976 Alu 222 TE_peak all_peaks 0.8844621514
8977 PiggyBac 119 TE_peak all_peaks 1.0000000000
8978 ERV1 434 TE_peak all_peaks 0.6121297602
8979 <NA> NA not_TE_peak all_peaks NA
8980 <NA> NA not_TE_peak all_peaks NA
8981 <NA> NA not_TE_peak all_peaks NA
8982 <NA> NA not_TE_peak all_peaks NA
8983 ERVL 281 not_TE_peak all_peaks 0.3530150754
8984 TcMar-Tigger 460 TE_peak all_peaks 0.6609195402
8985 ERV1 120 not_TE_peak all_peaks 0.3986710963
8986 ERV1 245 TE_peak all_peaks 1.0000000000
8987 RTE-BovB 124 TE_peak all_peaks 1.0000000000
8988 <NA> NA not_TE_peak all_peaks NA
8989 <NA> NA not_TE_peak all_peaks NA
8990 <NA> NA not_TE_peak all_peaks NA
8991 <NA> NA not_TE_peak all_peaks NA
8992 Simple_repeat 31 TE_peak all_peaks 1.0000000000
8993 L1 142 TE_peak all_peaks 0.6604651163
8994 L1 44 not_TE_peak all_peaks 0.1437908497
8995 Alu 43 not_TE_peak all_peaks 0.1391585761
8996 L2 129 TE_peak all_peaks 1.0000000000
8997 ERVL 82 TE_peak all_peaks 1.0000000000
8998 L1 176 TE_peak all_peaks 1.0000000000
8999 ERVL 63 not_TE_peak all_peaks 0.3405405405
9000 L2 192 not_TE_peak all_peaks 0.4671532847
9001 <NA> NA not_TE_peak all_peaks NA
9002 Alu 227 TE_peak all_peaks 0.7541528239
9003 L1 16 not_TE_peak all_peaks 0.0059303188
9004 L1 561 not_TE_peak all_peaks 0.4455917395
9005 TcMar-Tigger 456 TE_peak all_peaks 0.6686217009
9006 Alu 274 TE_peak all_peaks 1.0000000000
9007 MIR 218 TE_peak all_peaks 0.9396551724
9008 ERVL-MaLR 335 TE_peak all_peaks 1.0000000000
9009 hAT-Charlie 123 TE_peak all_peaks 1.0000000000
9010 Alu 46 not_TE_peak all_peaks 0.1642857143
9011 L1 711 not_TE_peak all_peaks 0.4311704063
9012 L2 445 TE_peak all_peaks 1.0000000000
9013 MIR 211 TE_peak all_peaks 1.0000000000
9014 ERVL-MaLR 308 TE_peak all_peaks 1.0000000000
9015 <NA> NA not_TE_peak all_peaks NA
9016 ERV1 193 not_TE_peak all_peaks 0.4923469388
9017 Simple_repeat 62 TE_peak all_peaks 1.0000000000
9018 Simple_repeat 20 TE_peak all_peaks 1.0000000000
9019 Simple_repeat 40 TE_peak all_peaks 1.0000000000
9020 Simple_repeat 75 TE_peak all_peaks 1.0000000000
9021 Simple_repeat 75 TE_peak all_peaks 1.0000000000
9022 MIR 49 TE_peak all_peaks 1.0000000000
9023 L1 969 not_TE_peak all_peaks 0.4017412935
9024 Simple_repeat 72 TE_peak all_peaks 1.0000000000
9025 ERV1 349 TE_peak all_peaks 0.5147492625
9026 Alu 76 not_TE_peak all_peaks 0.2533333333
9027 Alu 300 TE_peak all_peaks 0.9900990099
9028 L1 39 not_TE_peak all_peaks 0.0639344262
9029 ERV1 170 not_TE_peak all_peaks 0.2857142857
9030 Alu 75 TE_peak all_peaks 1.0000000000
9031 <NA> NA not_TE_peak all_peaks NA
9032 ERVK 352 not_TE_peak all_peaks 0.3502487562
9033 Alu 304 TE_peak all_peaks 1.0000000000
9034 ERVL-MaLR 19 not_TE_peak all_peaks 0.0363984674
9035 L1 576 TE_peak all_peaks 0.6134185304
9036 L1 656 TE_peak all_peaks 0.6514399206
9037 Alu 44 not_TE_peak all_peaks 0.3211678832
9038 L2 149 TE_peak all_peaks 1.0000000000
9039 MIR 115 TE_peak all_peaks 0.8455882353
9040 ERVL-MaLR 65 TE_peak all_peaks 1.0000000000
9041 Alu 288 TE_peak all_peaks 1.0000000000
9042 ERVL-MaLR 124 not_TE_peak all_peaks 0.4824902724
9043 MIR 10 not_TE_peak all_peaks 0.1265822785
9044 Simple_repeat 12 not_TE_peak all_peaks 0.2727272727
9045 MIR 120 TE_peak all_peaks 1.0000000000
9046 <NA> NA not_TE_peak all_peaks NA
9047 MIR 7 not_TE_peak all_peaks 0.0316742081
9048 hAT-Charlie 185 TE_peak all_peaks 1.0000000000
9049 Alu 234 TE_peak all_peaks 0.8041237113
9050 <NA> NA not_TE_peak all_peaks NA
9051 MIR 173 TE_peak all_peaks 0.7621145374
9052 ERV1 466 TE_peak all_peaks 1.0000000000
9053 Alu 57 not_TE_peak all_peaks 0.1912751678
9054 <NA> NA not_TE_peak all_peaks NA
9055 ERVL 253 TE_peak all_peaks 0.5476190476
9056 L2 123 TE_peak all_peaks 1.0000000000
9057 hAT-Charlie 80 not_TE_peak all_peaks 0.2531645570
9058 Low_complexity 117 TE_peak all_peaks 1.0000000000
9059 <NA> NA not_TE_peak all_peaks NA
9060 L2 245 TE_peak all_peaks 1.0000000000
9061 Alu 125 not_TE_peak all_peaks 0.4222972973
9062 L2 499 TE_peak all_peaks 1.0000000000
9063 Simple_repeat 32 TE_peak all_peaks 1.0000000000
9064 <NA> NA not_TE_peak all_peaks NA
9065 L1 388 not_TE_peak all_peaks 0.4020725389
9066 CR1 180 TE_peak all_peaks 0.6691449814
9067 L2 60 not_TE_peak all_peaks 0.1351351351
9068 L2 124 not_TE_peak all_peaks 0.3563218391
9069 MIR 24 not_TE_peak all_peaks 0.1518987342
9070 ERVL-MaLR 315 TE_peak all_peaks 1.0000000000
9071 L1 708 not_TE_peak all_peaks 0.4224343675
9072 ERV1 277 TE_peak all_peaks 0.6238738739
9073 <NA> NA not_TE_peak all_peaks NA
9074 RTE-X 47 not_TE_peak all_peaks 0.3533834586
9075 hAT-Charlie 151 TE_peak all_peaks 1.0000000000
9076 <NA> NA not_TE_peak all_peaks NA
9077 <NA> NA not_TE_peak all_peaks NA
9078 <NA> NA not_TE_peak all_peaks NA
9079 hAT-Tip100 7 not_TE_peak all_peaks 0.0260223048
9080 Simple_repeat 48 TE_peak all_peaks 1.0000000000
9081 MIR 63 TE_peak all_peaks 1.0000000000
9082 ERV1 13 not_TE_peak all_peaks 0.0185714286
9083 <NA> NA not_TE_peak all_peaks NA
9084 ERVL 96 not_TE_peak all_peaks 0.3664122137
9085 <NA> NA not_TE_peak all_peaks NA
9086 <NA> NA not_TE_peak all_peaks NA
9087 L2 108 TE_peak all_peaks 1.0000000000
9088 ERVL 126 not_TE_peak all_peaks 0.3987341772
9089 ERVL-MaLR 347 TE_peak all_peaks 1.0000000000
9090 <NA> NA not_TE_peak all_peaks NA
9091 ERVL 144 not_TE_peak all_peaks 0.1608938547
9092 hAT-Tip100 147 TE_peak all_peaks 1.0000000000
9093 Simple_repeat 18 TE_peak all_peaks 0.8181818182
9094 CR1 56 TE_peak all_peaks 1.0000000000
9095 L2 113 TE_peak all_peaks 1.0000000000
9096 <NA> NA not_TE_peak all_peaks NA
9097 <NA> NA not_TE_peak all_peaks NA
9098 <NA> NA not_TE_peak all_peaks NA
9099 <NA> NA not_TE_peak all_peaks NA
9100 L2 183 not_TE_peak all_peaks 0.2077185017
9101 Simple_repeat 37 TE_peak all_peaks 1.0000000000
9102 <NA> NA not_TE_peak all_peaks NA
9103 L2 130 TE_peak all_peaks 0.8227848101
9104 RTE-X 241 TE_peak all_peaks 1.0000000000
9105 Simple_repeat 18 TE_peak all_peaks 1.0000000000
9106 RTE-BovB 132 TE_peak all_peaks 1.0000000000
9107 MIR 108 TE_peak all_peaks 0.5454545455
9108 Gypsy 159 not_TE_peak all_peaks 0.4937888199
9109 <NA> NA not_TE_peak all_peaks NA
9110 TcMar-Mariner 179 TE_peak all_peaks 1.0000000000
9111 Alu 32 not_TE_peak all_peaks 0.1077441077
9112 hAT-Charlie 25 TE_peak all_peaks 1.0000000000
9113 hAT-Charlie 162 TE_peak all_peaks 1.0000000000
9114 <NA> NA not_TE_peak all_peaks NA
9115 <NA> NA not_TE_peak all_peaks NA
9116 L1 99 not_TE_peak all_peaks 0.1033402923
9117 Simple_repeat 43 TE_peak all_peaks 1.0000000000
9118 L2 15 not_TE_peak all_peaks 0.1744186047
9119 Simple_repeat 32 TE_peak all_peaks 1.0000000000
9120 Simple_repeat 59 TE_peak all_peaks 1.0000000000
9121 hAT-Charlie 140 not_TE_peak all_peaks 0.4946996466
9122 hAT-Charlie 63 TE_peak all_peaks 1.0000000000
9123 MIR 66 not_TE_peak all_peaks 0.3837209302
9124 <NA> NA not_TE_peak all_peaks NA
9125 <NA> NA not_TE_peak all_peaks NA
9126 MIR 109 TE_peak all_peaks 0.5000000000
9127 Alu 255 TE_peak all_peaks 0.8793103448
9128 L1 50 TE_peak all_peaks 1.0000000000
9129 <NA> NA not_TE_peak all_peaks NA
9130 L2 247 TE_peak all_peaks 1.0000000000
9131 MIR 160 TE_peak all_peaks 1.0000000000
9132 Simple_repeat 25 TE_peak all_peaks 1.0000000000
9133 Low_complexity 44 TE_peak all_peaks 1.0000000000
9134 Alu 121 not_TE_peak all_peaks 0.3853503185
9135 L1 468 TE_peak all_peaks 0.5564803805
9136 L1 242 not_TE_peak all_peaks 0.2877526754
9137 Alu 211 TE_peak all_peaks 1.0000000000
9138 L1 198 not_TE_peak all_peaks 0.2397094431
9139 <NA> NA not_TE_peak all_peaks NA
9140 Alu 57 not_TE_peak all_peaks 0.1753846154
9141 Alu 45 not_TE_peak all_peaks 0.1490066225
9142 hAT-Charlie 98 TE_peak all_peaks 1.0000000000
9143 <NA> NA not_TE_peak all_peaks NA
9144 <NA> NA not_TE_peak all_peaks NA
9145 TcMar-Tigger 1058 TE_peak all_peaks 0.9104991394
9146 Simple_repeat 14 TE_peak all_peaks 1.0000000000
9147 L1 46 TE_peak all_peaks 1.0000000000
9148 Simple_repeat 62 TE_peak all_peaks 1.0000000000
9149 L1 116 TE_peak all_peaks 1.0000000000
9150 <NA> NA not_TE_peak all_peaks NA
9151 MIR 213 TE_peak all_peaks 0.9181034483
9152 <NA> NA not_TE_peak all_peaks NA
9153 L1 622 not_TE_peak all_peaks 0.2953466287
9154 Simple_repeat 26 TE_peak all_peaks 1.0000000000
9155 Simple_repeat 46 TE_peak all_peaks 1.0000000000
9156 L1 163 TE_peak all_peaks 0.6127819549
9157 Alu 260 TE_peak all_peaks 0.8724832215
9158 <NA> NA not_TE_peak all_peaks NA
9159 Simple_repeat 40 TE_peak all_peaks 1.0000000000
9160 Simple_repeat 32 TE_peak all_peaks 1.0000000000
9161 Simple_repeat 57 TE_peak all_peaks 1.0000000000
9162 L2 107 not_TE_peak all_peaks 0.3128654971
9163 hAT-Charlie 206 TE_peak all_peaks 1.0000000000
9164 MIR 9 TE_peak all_peaks 0.6428571429
9165 hAT-Charlie 171 TE_peak all_peaks 0.7702702703
9166 <NA> NA not_TE_peak all_peaks NA
9167 rRNA 90 TE_peak all_peaks 1.0000000000
9168 ERVL-MaLR 149 TE_peak all_peaks 0.7563451777
9169 ERVL-MaLR 112 not_TE_peak all_peaks 0.3119777159
9170 Alu 188 TE_peak all_peaks 0.6573426573
9171 Alu 69 not_TE_peak all_peaks 0.2149532710
9172 L2 529 TE_peak all_peaks 1.0000000000
9173 <NA> NA not_TE_peak all_peaks NA
9174 Simple_repeat 28 TE_peak all_peaks 1.0000000000
9175 L2 75 TE_peak all_peaks 0.6818181818
9176 L2 223 TE_peak all_peaks 0.5837696335
9177 <NA> NA not_TE_peak all_peaks NA
9178 Simple_repeat 33 TE_peak all_peaks 1.0000000000
9179 Alu 304 TE_peak all_peaks 1.0000000000
9180 Simple_repeat 82 TE_peak all_peaks 1.0000000000
9181 <NA> NA not_TE_peak all_peaks NA
9182 Alu 60 not_TE_peak all_peaks 0.2142857143
9183 MIR 179 TE_peak all_peaks 1.0000000000
9184 <NA> NA not_TE_peak all_peaks NA
9185 <NA> NA not_TE_peak all_peaks NA
9186 MIR 112 TE_peak all_peaks 0.7832167832
9187 L1 130 not_TE_peak all_peaks 0.1108269395
9188 hAT-Charlie 200 TE_peak all_peaks 1.0000000000
9189 TcMar-Tigger 173 TE_peak all_peaks 0.6553030303
9190 L1 203 TE_peak all_peaks 0.6170212766
9191 <NA> NA not_TE_peak all_peaks NA
9192 ERVL 338 TE_peak all_peaks 0.6666666667
9193 L1 41 not_TE_peak all_peaks 0.1371237458
9194 ERVL 131 not_TE_peak all_peaks 0.4410774411
9195 Low_complexity 44 TE_peak all_peaks 1.0000000000
9196 Low_complexity 38 TE_peak all_peaks 1.0000000000
9197 L2 90 TE_peak all_peaks 1.0000000000
9198 Alu 8 not_TE_peak all_peaks 0.0286738351
9199 L2 113 TE_peak all_peaks 0.8828125000
9200 L2 67 not_TE_peak all_peaks 0.2863247863
9201 TcMar-Tigger 82 TE_peak all_peaks 1.0000000000
9202 Simple_repeat 72 TE_peak all_peaks 1.0000000000
9203 <NA> NA not_TE_peak all_peaks NA
9204 Alu 147 not_TE_peak all_peaks 0.4900000000
9205 L2 195 TE_peak all_peaks 0.7414448669
9206 L1 33 not_TE_peak all_peaks 0.0195150798
9207 ERVL 451 TE_peak all_peaks 0.9616204691
9208 L1 26 not_TE_peak all_peaks 0.2300884956
9209 L2 299 TE_peak all_peaks 1.0000000000
9210 ERVL-MaLR 83 TE_peak all_peaks 0.7545454545
9211 L2 401 TE_peak all_peaks 0.8442105263
9212 L2 25 not_TE_peak all_peaks 0.0394944708
9213 <NA> NA not_TE_peak all_peaks NA
9214 ERV1 281 not_TE_peak all_peaks 0.0357097471
9215 MIR 246 TE_peak all_peaks 1.0000000000
9216 <NA> NA not_TE_peak all_peaks NA
9217 <NA> NA not_TE_peak all_peaks NA
9218 ERV1 428 TE_peak all_peaks 0.5005847953
9219 tRNA-RTE 153 TE_peak all_peaks 1.0000000000
9220 Simple_repeat 21 not_TE_peak all_peaks 0.3620689655
9221 Alu 139 TE_peak all_peaks 0.9652777778
9222 ERVL-MaLR 97 not_TE_peak all_peaks 0.1644067797
9223 ERVL-MaLR 329 TE_peak all_peaks 0.7633410673
9224 <NA> NA not_TE_peak all_peaks NA
9225 <NA> NA not_TE_peak all_peaks NA
9226 L2 348 TE_peak all_peaks 0.5403726708
9227 Simple_repeat 23 TE_peak all_peaks 0.6052631579
9228 ERVL-MaLR 203 TE_peak all_peaks 1.0000000000
9229 ERVL-MaLR 163 TE_peak all_peaks 1.0000000000
9230 ERVL-MaLR 98 TE_peak all_peaks 0.5077720207
9231 <NA> NA not_TE_peak all_peaks NA
9232 ERV1 421 TE_peak all_peaks 1.0000000000
9233 ERV1 85 not_TE_peak all_peaks 0.1804670913
9234 <NA> NA not_TE_peak all_peaks NA
9235 <NA> NA not_TE_peak all_peaks NA
9236 ERVK 504 TE_peak all_peaks 0.5283018868
9237 ERVL-MaLR 124 not_TE_peak all_peaks 0.2116040956
9238 ERVL-MaLR 190 TE_peak all_peaks 1.0000000000
9239 <NA> NA not_TE_peak all_peaks NA
9240 ERV1 403 TE_peak all_peaks 0.7810077519
9241 <NA> NA not_TE_peak all_peaks NA
9242 ERV1 66 not_TE_peak all_peaks 0.0822942643
9243 ERV1 113 TE_peak all_peaks 1.0000000000
9244 L1 499 TE_peak all_peaks 1.0000000000
9245 L1 113 not_TE_peak all_peaks 0.4688796680
9246 <NA> NA not_TE_peak all_peaks NA
9247 L2 197 TE_peak all_peaks 0.5090439276
9248 <NA> NA not_TE_peak all_peaks NA
9249 ERV1 110 not_TE_peak all_peaks 0.0769769069
9250 ERVL 48 TE_peak all_peaks 1.0000000000
9251 ERVL 45 TE_peak all_peaks 1.0000000000
9252 ERVL 239 TE_peak all_peaks 0.6809116809
9253 MIR 88 not_TE_peak all_peaks 0.3410852713
9254 <NA> NA not_TE_peak all_peaks NA
9255 <NA> NA not_TE_peak all_peaks NA
9256 L2 381 TE_peak all_peaks 0.7871900826
9257 L1 528 TE_peak all_peaks 0.8888888889
9258 Simple_repeat 22 TE_peak all_peaks 0.6285714286
9259 L2 332 TE_peak all_peaks 0.6372360845
9260 <NA> NA not_TE_peak all_peaks NA
9261 L2 63 not_TE_peak all_peaks 0.4632352941
9262 Simple_repeat 59 TE_peak all_peaks 1.0000000000
9263 MIR 84 TE_peak all_peaks 0.5526315789
9264 <NA> NA not_TE_peak all_peaks NA
9265 L2 45 not_TE_peak all_peaks 0.3947368421
9266 L1 396 not_TE_peak all_peaks 0.2173435785
9267 <NA> NA not_TE_peak all_peaks NA
9268 ERVL-MaLR 355 TE_peak all_peaks 0.6879844961
9269 MIR 135 TE_peak all_peaks 0.9712230216
9270 <NA> NA not_TE_peak all_peaks NA
9271 Gypsy 228 TE_peak all_peaks 0.8028169014
9272 MIR 235 TE_peak all_peaks 1.0000000000
9273 ERV1 49 not_TE_peak all_peaks 0.1056034483
9274 <NA> NA not_TE_peak all_peaks NA
9275 hAT-Tip100 438 TE_peak all_peaks 0.5087108014
9276 L2 50 TE_peak all_peaks 0.8474576271
9277 LTR 208 TE_peak all_peaks 0.6864686469
9278 ERV1 137 TE_peak all_peaks 1.0000000000
9279 ERV1 107 TE_peak all_peaks 0.8045112782
9280 hAT-Tip100 169 not_TE_peak all_peaks 0.3876146789
9281 L2 276 TE_peak all_peaks 1.0000000000
9282 hAT-Charlie 215 TE_peak all_peaks 1.0000000000
9283 L2 28 TE_peak all_peaks 1.0000000000
9284 Alu 30 not_TE_peak all_peaks 0.0970873786
9285 L2 194 not_TE_peak all_peaks 0.3094098884
9286 L2 17 not_TE_peak all_peaks 0.0776255708
9287 hAT-Ac 387 TE_peak all_peaks 1.0000000000
9288 <NA> NA not_TE_peak all_peaks NA
9289 TcMar-Tigger 130 TE_peak all_peaks 0.7926829268
9290 L1 70 TE_peak all_peaks 1.0000000000
9291 L2 150 TE_peak all_peaks 1.0000000000
9292 L2 377 not_TE_peak all_peaks 0.4343317972
9293 hAT-Tip100 36 not_TE_peak all_peaks 0.2195121951
9294 MIR 195 TE_peak all_peaks 1.0000000000
9295 Simple_repeat 55 TE_peak all_peaks 1.0000000000
9296 <NA> NA not_TE_peak all_peaks NA
9297 hAT-Charlie 122 TE_peak all_peaks 0.5545454545
9298 L2 294 TE_peak all_peaks 0.9607843137
9299 ERVL-MaLR 59 TE_peak all_peaks 0.5841584158
9300 <NA> NA not_TE_peak all_peaks NA
9301 Unknown 90 TE_peak all_peaks 0.9574468085
9302 5S-Deu-L2 208 TE_peak all_peaks 1.0000000000
9303 5S-Deu-L2 51 TE_peak all_peaks 0.6986301370
9304 L2 74 not_TE_peak all_peaks 0.1670428894
9305 <NA> NA not_TE_peak all_peaks NA
9306 <NA> NA not_TE_peak all_peaks NA
9307 <NA> NA not_TE_peak all_peaks NA
9308 ERVL-MaLR 141 TE_peak all_peaks 0.7193877551
9309 <NA> NA not_TE_peak all_peaks NA
9310 Simple_repeat 172 TE_peak all_peaks 1.0000000000
9311 L2 56 not_TE_peak all_peaks 0.2248995984
9312 ERVL-MaLR 164 not_TE_peak all_peaks 0.4593837535
9313 L2 65 TE_peak all_peaks 1.0000000000
9314 L2 112 TE_peak all_peaks 1.0000000000
9315 Simple_repeat 5 not_TE_peak all_peaks 0.0793650794
9316 Alu 47 not_TE_peak all_peaks 0.1631944444
9317 <NA> NA not_TE_peak all_peaks NA
9318 <NA> NA not_TE_peak all_peaks NA
9319 Alu 166 TE_peak all_peaks 0.5303514377
9320 Alu 241 TE_peak all_peaks 0.7953795380
9321 <NA> NA not_TE_peak all_peaks NA
9322 <NA> NA not_TE_peak all_peaks NA
9323 L2 202 not_TE_peak all_peaks 0.3620071685
9324 L2 93 TE_peak all_peaks 1.0000000000
9325 hAT-Charlie 106 TE_peak all_peaks 1.0000000000
9326 Simple_repeat 48 TE_peak all_peaks 1.0000000000
9327 Simple_repeat 40 TE_peak all_peaks 1.0000000000
9328 <NA> NA not_TE_peak all_peaks NA
9329 Simple_repeat 6 TE_peak all_peaks 1.0000000000
9330 Simple_repeat 30 TE_peak all_peaks 1.0000000000
9331 Simple_repeat 42 not_TE_peak all_peaks 0.4421052632
9332 Alu 310 TE_peak all_peaks 1.0000000000
9333 MIR 224 TE_peak all_peaks 1.0000000000
9334 <NA> NA not_TE_peak all_peaks NA
9335 ERVL 419 TE_peak all_peaks 1.0000000000
9336 <NA> NA not_TE_peak all_peaks NA
9337 <NA> NA not_TE_peak all_peaks NA
9338 <NA> NA not_TE_peak all_peaks NA
9339 <NA> NA not_TE_peak all_peaks NA
9340 MIR 185 TE_peak all_peaks 1.0000000000
9341 <NA> NA not_TE_peak all_peaks NA
9342 <NA> NA not_TE_peak all_peaks NA
9343 L2 31 not_TE_peak all_peaks 0.4366197183
9344 L2 146 TE_peak all_peaks 1.0000000000
9345 L2 174 TE_peak all_peaks 1.0000000000
9346 L2 52 TE_peak all_peaks 0.5416666667
9347 ERVL 140 not_TE_peak all_peaks 0.3473945409
9348 <NA> NA not_TE_peak all_peaks NA
9349 MIR 94 TE_peak all_peaks 0.8392857143
9350 Unknown 113 TE_peak all_peaks 0.5765306122
9351 Alu 115 TE_peak all_peaks 0.9426229508
9352 L1 2 not_TE_peak all_peaks 0.0045146727
9353 ERVL-MaLR 213 TE_peak all_peaks 0.5298507463
9354 ERVL-MaLR 392 TE_peak all_peaks 1.0000000000
9355 <NA> NA not_TE_peak all_peaks NA
9356 Alu 26 not_TE_peak all_peaks 0.0925266904
9357 Simple_repeat 64 TE_peak all_peaks 1.0000000000
9358 MIR 223 TE_peak all_peaks 1.0000000000
9359 L1 26 not_TE_peak all_peaks 0.0148741419
9360 L1 14 not_TE_peak all_peaks 0.0736842105
9361 hAT-Charlie 186 TE_peak all_peaks 1.0000000000
9362 <NA> NA not_TE_peak all_peaks NA
9363 MIR 19 not_TE_peak all_peaks 0.0900473934
9364 L2 218 TE_peak all_peaks 1.0000000000
9365 L2 110 TE_peak all_peaks 1.0000000000
9366 <NA> NA not_TE_peak all_peaks NA
9367 <NA> NA not_TE_peak all_peaks NA
9368 <NA> NA not_TE_peak all_peaks NA
9369 L2 143 TE_peak all_peaks 1.0000000000
9370 <NA> NA not_TE_peak all_peaks NA
9371 ERV1 491 TE_peak all_peaks 0.7565485362
9372 <NA> NA not_TE_peak all_peaks NA
9373 <NA> NA not_TE_peak all_peaks NA
9374 <NA> NA not_TE_peak all_peaks NA
9375 <NA> NA not_TE_peak all_peaks NA
9376 <NA> NA not_TE_peak all_peaks NA
9377 MIR 120 TE_peak all_peaks 1.0000000000
9378 hAT-Tip100 254 TE_peak all_peaks 0.7720364742
9379 L1 33 not_TE_peak all_peaks 0.2444444444
9380 <NA> NA not_TE_peak all_peaks NA
9381 ERVL-MaLR 196 TE_peak all_peaks 0.5326086957
9382 MIR 41 TE_peak all_peaks 1.0000000000
9383 Simple_repeat 46 TE_peak all_peaks 1.0000000000
9384 L2 221 TE_peak all_peaks 0.9692982456
9385 <NA> NA not_TE_peak all_peaks NA
9386 <NA> NA not_TE_peak all_peaks NA
9387 L1 783 not_TE_peak all_peaks 0.1299153808
9388 L2 2 not_TE_peak all_peaks 0.0357142857
9389 ERVL-MaLR 379 TE_peak all_peaks 0.9921465969
9390 <NA> NA not_TE_peak all_peaks NA
9391 <NA> NA not_TE_peak all_peaks NA
9392 ERVL 129 not_TE_peak all_peaks 0.4760147601
9393 MIR 10 not_TE_peak all_peaks 0.0497512438
9394 hAT-Tip100 178 TE_peak all_peaks 1.0000000000
9395 Low_complexity 49 TE_peak all_peaks 1.0000000000
9396 MIR 94 TE_peak all_peaks 1.0000000000
9397 MIR 106 not_TE_peak all_peaks 0.4206349206
9398 <NA> NA not_TE_peak all_peaks NA
9399 <NA> NA not_TE_peak all_peaks NA
9400 ERVL 308 TE_peak all_peaks 0.7113163972
9401 L2 118 TE_peak all_peaks 1.0000000000
9402 L2 13 not_TE_peak all_peaks 0.2280701754
9403 LTR? 156 not_TE_peak all_peaks 0.3305084746
9404 <NA> NA not_TE_peak all_peaks NA
9405 <NA> NA not_TE_peak all_peaks NA
9406 L2 50 TE_peak all_peaks 1.0000000000
9407 L2 1 not_TE_peak all_peaks 0.0123456790
9408 L1 72 not_TE_peak all_peaks 0.2562277580
9409 ERVL-MaLR 308 TE_peak all_peaks 1.0000000000
9410 L2 219 TE_peak all_peaks 0.6697247706
9411 hAT-Charlie 35 not_TE_peak all_peaks 0.4268292683
9412 <NA> NA not_TE_peak all_peaks NA
9413 <NA> NA not_TE_peak all_peaks NA
9414 Simple_repeat 66 TE_peak all_peaks 1.0000000000
9415 <NA> NA not_TE_peak all_peaks NA
9416 L2 656 TE_peak all_peaks 0.7522935780
9417 L1 183 not_TE_peak all_peaks 0.3588235294
9418 ERVL-MaLR 190 TE_peak all_peaks 0.7723577236
9419 ERVL-MaLR 175 TE_peak all_peaks 1.0000000000
9420 L1 397 TE_peak all_peaks 0.8941441441
9421 ERVL-MaLR 420 TE_peak all_peaks 0.7567567568
9422 Alu 81 not_TE_peak all_peaks 0.2822299652
9423 Gypsy 192 TE_peak all_peaks 1.0000000000
9424 hAT-Charlie 336 TE_peak all_peaks 1.0000000000
9425 Gypsy 165 not_TE_peak all_peaks 0.3819444444
9426 L2 440 TE_peak all_peaks 1.0000000000
9427 L1 886 not_TE_peak all_peaks 0.3828867761
9428 <NA> NA not_TE_peak all_peaks NA
9429 ERVL-MaLR 372 TE_peak all_peaks 0.7395626243
9430 <NA> NA not_TE_peak all_peaks NA
9431 hAT-Charlie 37 not_TE_peak all_peaks 0.1497975709
9432 ERVL-MaLR 382 TE_peak all_peaks 1.0000000000
9433 TcMar-Tigger 235 TE_peak all_peaks 1.0000000000
9434 MIR 47 TE_peak all_peaks 1.0000000000
9435 ERV1 53 not_TE_peak all_peaks 0.4308943089
9436 ERV1 75 not_TE_peak all_peaks 0.3099173554
9437 <NA> NA not_TE_peak all_peaks NA
9438 Alu 32 not_TE_peak all_peaks 0.1163636364
9439 Simple_repeat 5 not_TE_peak all_peaks 0.1666666667
9440 Simple_repeat 38 TE_peak all_peaks 0.7450980392
9441 MIR 103 TE_peak all_peaks 1.0000000000
9442 MIR 230 TE_peak all_peaks 1.0000000000
9443 hAT-Charlie 150 TE_peak all_peaks 1.0000000000
9444 MIR 62 not_TE_peak all_peaks 0.4397163121
9445 Simple_repeat 80 TE_peak all_peaks 1.0000000000
9446 Low_complexity 30 TE_peak all_peaks 1.0000000000
9447 MIR 153 TE_peak all_peaks 1.0000000000
9448 MIR 119 TE_peak all_peaks 0.6685393258
9449 ERV1 587 TE_peak all_peaks 1.0000000000
9450 Alu 32 not_TE_peak all_peaks 0.1226053640
9451 ERV1 640 TE_peak all_peaks 0.8432147563
9452 ERV1 523 TE_peak all_peaks 0.6286057692
9453 ERV1 222 not_TE_peak all_peaks 0.2668269231
9454 TcMar-Tigger 41 TE_peak all_peaks 1.0000000000
9455 ERV1 53 not_TE_peak all_peaks 0.0254807692
9456 ERV1 357 TE_peak all_peaks 0.6490909091
9457 Alu 36 not_TE_peak all_peaks 0.1208053691
9458 <NA> NA not_TE_peak all_peaks NA
9459 Alu 48 not_TE_peak all_peaks 0.1490683230
9460 Dong-R4 94 TE_peak all_peaks 1.0000000000
9461 L1 59 TE_peak all_peaks 1.0000000000
9462 ERV1 127 not_TE_peak all_peaks 0.3702623907
9463 Low_complexity 50 TE_peak all_peaks 1.0000000000
9464 L2 148 TE_peak all_peaks 1.0000000000
9465 L2 44 TE_peak all_peaks 1.0000000000
9466 ERVL 356 TE_peak all_peaks 0.6202090592
9467 L2 20 TE_peak all_peaks 1.0000000000
9468 Alu 109 not_TE_peak all_peaks 0.4144486692
9469 Simple_repeat 18 TE_peak all_peaks 1.0000000000
9470 MIR 145 TE_peak all_peaks 1.0000000000
9471 RTE-BovB 76 TE_peak all_peaks 1.0000000000
9472 Simple_repeat 40 TE_peak all_peaks 1.0000000000
9473 Simple_repeat 41 TE_peak all_peaks 1.0000000000
9474 Low_complexity 53 TE_peak all_peaks 1.0000000000
9475 <NA> NA not_TE_peak all_peaks NA
9476 <NA> NA not_TE_peak all_peaks NA
9477 L2 192 TE_peak all_peaks 0.5925925926
9478 Simple_repeat 22 TE_peak all_peaks 0.7333333333
9479 MIR 193 TE_peak all_peaks 1.0000000000
9480 <NA> NA not_TE_peak all_peaks NA
9481 <NA> NA not_TE_peak all_peaks NA
9482 ERVL-MaLR 232 TE_peak all_peaks 0.5110132159
9483 Simple_repeat 46 TE_peak all_peaks 1.0000000000
9484 Simple_repeat 51 TE_peak all_peaks 1.0000000000
9485 L2 39 not_TE_peak all_peaks 0.2785714286
9486 MIR 166 TE_peak all_peaks 1.0000000000
9487 L2 84 TE_peak all_peaks 1.0000000000
9488 <NA> NA not_TE_peak all_peaks NA
9489 <NA> NA not_TE_peak all_peaks NA
9490 Alu 129 not_TE_peak all_peaks 0.3944954128
9491 L2 78 TE_peak all_peaks 1.0000000000
9492 Low_complexity 37 TE_peak all_peaks 1.0000000000
9493 MIR 51 TE_peak all_peaks 1.0000000000
9494 Simple_repeat 29 TE_peak all_peaks 1.0000000000
9495 MIR 220 TE_peak all_peaks 1.0000000000
9496 TcMar-Tigger 107 TE_peak all_peaks 1.0000000000
9497 L2 122 TE_peak all_peaks 0.9312977099
9498 hAT-Charlie 191 TE_peak all_peaks 1.0000000000
9499 L1 170 TE_peak all_peaks 1.0000000000
9500 Simple_repeat 60 TE_peak all_peaks 1.0000000000
9501 Simple_repeat 28 TE_peak all_peaks 1.0000000000
9502 hAT-Charlie 31 not_TE_peak all_peaks 0.1856287425
9503 Simple_repeat 37 TE_peak all_peaks 1.0000000000
9504 ERV1 63 not_TE_peak all_peaks 0.1536585366
9505 <NA> NA not_TE_peak all_peaks NA
9506 <NA> NA not_TE_peak all_peaks NA
9507 <NA> NA not_TE_peak all_peaks NA
9508 <NA> NA not_TE_peak all_peaks NA
9509 Alu 100 not_TE_peak all_peaks 0.3236245955
9510 <NA> NA not_TE_peak all_peaks NA
9511 <NA> NA not_TE_peak all_peaks NA
9512 Simple_repeat 55 TE_peak all_peaks 1.0000000000
9513 Alu 134 TE_peak all_peaks 1.0000000000
9514 L2 86 TE_peak all_peaks 1.0000000000
9515 <NA> NA not_TE_peak all_peaks NA
9516 L2 134 TE_peak all_peaks 1.0000000000
9517 L2 96 TE_peak all_peaks 1.0000000000
9518 Simple_repeat 36 TE_peak all_peaks 1.0000000000
9519 L2 59 TE_peak all_peaks 1.0000000000
9520 MIR 86 TE_peak all_peaks 0.6231884058
9521 hAT-Charlie 85 TE_peak all_peaks 0.8018867925
9522 L2 333 TE_peak all_peaks 1.0000000000
9523 L1 82 TE_peak all_peaks 1.0000000000
9524 L1 65 not_TE_peak all_peaks 0.3110047847
9525 L1 84 not_TE_peak all_peaks 0.2434782609
9526 L1 374 not_TE_peak all_peaks 0.4109890110
9527 L1 316 not_TE_peak all_peaks 0.3082926829
9528 ERVL-MaLR 431 TE_peak all_peaks 1.0000000000
9529 hAT-Charlie 55 TE_peak all_peaks 0.5045871560
9530 L2 103 TE_peak all_peaks 0.5309278351
9531 L2 183 TE_peak all_peaks 1.0000000000
9532 L1 407 TE_peak all_peaks 0.7650375940
9533 MIR 123 TE_peak all_peaks 0.7500000000
9534 Simple_repeat 66 TE_peak all_peaks 1.0000000000
9535 Simple_repeat 29 TE_peak all_peaks 1.0000000000
9536 Low_complexity 53 TE_peak all_peaks 1.0000000000
9537 Alu 66 not_TE_peak all_peaks 0.2200000000
9538 <NA> NA not_TE_peak all_peaks NA
9539 <NA> NA not_TE_peak all_peaks NA
9540 <NA> NA not_TE_peak all_peaks NA
9541 CR1 53 TE_peak all_peaks 0.6973684211
9542 <NA> NA not_TE_peak all_peaks NA
9543 Simple_repeat 33 TE_peak all_peaks 1.0000000000
9544 Simple_repeat 36 TE_peak all_peaks 1.0000000000
9545 Simple_repeat 40 TE_peak all_peaks 1.0000000000
9546 L1 78 TE_peak all_peaks 1.0000000000
9547 L2 144 TE_peak all_peaks 0.7309644670
9548 MIR 92 TE_peak all_peaks 1.0000000000
9549 <NA> NA not_TE_peak all_peaks NA
9550 <NA> NA not_TE_peak all_peaks NA
9551 MIR 75 TE_peak all_peaks 1.0000000000
9552 CR1 25 not_TE_peak all_peaks 0.4098360656
9553 ERVL 212 TE_peak all_peaks 1.0000000000
9554 ERVL 28 not_TE_peak all_peaks 0.2258064516
9555 <NA> NA not_TE_peak all_peaks NA
9556 <NA> NA not_TE_peak all_peaks NA
9557 <NA> NA not_TE_peak all_peaks NA
9558 <NA> NA not_TE_peak all_peaks NA
9559 Alu 67 not_TE_peak all_peaks 0.2196721311
9560 Low_complexity 44 TE_peak all_peaks 1.0000000000
9561 Simple_repeat 83 TE_peak all_peaks 1.0000000000
9562 ERV1 251 TE_peak all_peaks 0.7233429395
9563 <NA> NA not_TE_peak all_peaks NA
9564 <NA> NA not_TE_peak all_peaks NA
9565 MIR 181 TE_peak all_peaks 1.0000000000
9566 Simple_repeat 22 TE_peak all_peaks 1.0000000000
9567 ERVL 156 not_TE_peak all_peaks 0.3929471033
9568 MIR 129 TE_peak all_peaks 1.0000000000
9569 ERV1 164 not_TE_peak all_peaks 0.2586750789
9570 <NA> NA not_TE_peak all_peaks NA
9571 <NA> NA not_TE_peak all_peaks NA
9572 <NA> NA not_TE_peak all_peaks NA
9573 RTE-BovB 50 not_TE_peak all_peaks 0.3164556962
9574 Simple_repeat 46 TE_peak all_peaks 1.0000000000
9575 Simple_repeat 47 TE_peak all_peaks 1.0000000000
9576 Gypsy 84 TE_peak all_peaks 0.5316455696
9577 MIR 218 TE_peak all_peaks 1.0000000000
9578 hAT-Charlie 137 TE_peak all_peaks 1.0000000000
9579 Alu 77 not_TE_peak all_peaks 0.2720848057
9580 hAT-Charlie 72 TE_peak all_peaks 1.0000000000
9581 L2 180 not_TE_peak all_peaks 0.4864864865
9582 <NA> NA not_TE_peak all_peaks NA
9583 <NA> NA not_TE_peak all_peaks NA
9584 <NA> NA not_TE_peak all_peaks NA
9585 CR1 171 TE_peak all_peaks 1.0000000000
9586 hAT-Charlie 10 not_TE_peak all_peaks 0.0432900433
9587 <NA> NA not_TE_peak all_peaks NA
9588 <NA> NA not_TE_peak all_peaks NA
9589 Simple_repeat 119 TE_peak all_peaks 1.0000000000
9590 tRNA-RTE 92 TE_peak all_peaks 1.0000000000
9591 Simple_repeat 19 TE_peak all_peaks 1.0000000000
9592 L2 93 TE_peak all_peaks 1.0000000000
9593 Simple_repeat 32 TE_peak all_peaks 1.0000000000
9594 MIR 40 not_TE_peak all_peaks 0.2116402116
9595 MIR 50 not_TE_peak all_peaks 0.4807692308
9596 Simple_repeat 8 TE_peak all_peaks 1.0000000000
9597 Simple_repeat 31 TE_peak all_peaks 1.0000000000
9598 Simple_repeat 39 TE_peak all_peaks 1.0000000000
9599 Low_complexity 53 TE_peak all_peaks 1.0000000000
9600 hAT-Charlie 157 TE_peak all_peaks 1.0000000000
9601 <NA> NA not_TE_peak all_peaks NA
9602 Simple_repeat 67 TE_peak all_peaks 1.0000000000
9603 <NA> NA not_TE_peak all_peaks NA
9604 <NA> NA not_TE_peak all_peaks NA
9605 <NA> NA not_TE_peak all_peaks NA
9606 <NA> NA not_TE_peak all_peaks NA
9607 MIR 100 TE_peak all_peaks 0.7299270073
9608 <NA> NA not_TE_peak all_peaks NA
9609 L2 99 TE_peak all_peaks 1.0000000000
9610 MIR 146 TE_peak all_peaks 1.0000000000
9611 MIR 117 TE_peak all_peaks 0.9590163934
9612 Alu 272 TE_peak all_peaks 1.0000000000
9613 Alu 8 not_TE_peak all_peaks 0.0370370370
9614 <NA> NA not_TE_peak all_peaks NA
9615 MIR 72 TE_peak all_peaks 0.5255474453
9616 L2 35 TE_peak all_peaks 1.0000000000
9617 MIR 37 not_TE_peak all_peaks 0.1497975709
9618 L1 266 not_TE_peak all_peaks 0.0709522539
9619 L1 384 not_TE_peak all_peaks 0.1024273140
9620 Low_complexity 47 TE_peak all_peaks 1.0000000000
9621 CR1 53 TE_peak all_peaks 0.5888888889
9622 MIR 166 TE_peak all_peaks 0.7757009346
9623 L2 26 not_TE_peak all_peaks 0.3132530120
9624 ERVL-MaLR 414 TE_peak all_peaks 0.9345372460
9625 ERVL 156 not_TE_peak all_peaks 0.3561643836
9626 MIR 225 TE_peak all_peaks 1.0000000000
9627 MIR 95 TE_peak all_peaks 1.0000000000
9628 ERVL 284 not_TE_peak all_peaks 0.1338360038
9629 L2 91 TE_peak all_peaks 1.0000000000
9630 MIR 142 TE_peak all_peaks 1.0000000000
9631 MIR 9 not_TE_peak all_peaks 0.1097560976
9632 ERVL 111 not_TE_peak all_peaks 0.3546325879
9633 ERVL 240 not_TE_peak all_peaks 0.0485535100
9634 <NA> NA not_TE_peak all_peaks NA
9635 Alu 55 TE_peak all_peaks 1.0000000000
9636 ERV1 330 TE_peak all_peaks 0.8312342569
9637 ERV1 120 TE_peak all_peaks 0.7547169811
9638 L2 303 TE_peak all_peaks 0.5033222591
9639 Gypsy 157 TE_peak all_peaks 1.0000000000
9640 ERVK 57 TE_peak all_peaks 1.0000000000
9641 Simple_repeat 37 TE_peak all_peaks 1.0000000000
9642 <NA> NA not_TE_peak all_peaks NA
9643 <NA> NA not_TE_peak all_peaks NA
9644 hAT-Tip100 356 TE_peak all_peaks 0.6212914485
9645 hAT-Tip100 413 not_TE_peak all_peaks 0.3903591682
9646 MIR 134 TE_peak all_peaks 1.0000000000
9647 ERVL 365 TE_peak all_peaks 0.7765957447
9648 Simple_repeat 26 TE_peak all_peaks 1.0000000000
9649 hAT-Charlie 1 not_TE_peak all_peaks 0.0061349693
9650 <NA> NA not_TE_peak all_peaks NA
9651 <NA> NA not_TE_peak all_peaks NA
9652 L2 79 TE_peak all_peaks 1.0000000000
9653 MIR 112 TE_peak all_peaks 1.0000000000
9654 TcMar-Tigger 134 TE_peak all_peaks 0.5425101215
9655 <NA> NA not_TE_peak all_peaks NA
9656 MIR 104 TE_peak all_peaks 0.5445026178
9657 L1 57 not_TE_peak all_peaks 0.0396383866
9658 MIR 208 TE_peak all_peaks 1.0000000000
9659 L2 127 TE_peak all_peaks 1.0000000000
9660 L2 35 TE_peak all_peaks 0.5303030303
9661 MIR 124 TE_peak all_peaks 0.8000000000
9662 L1 7 not_TE_peak all_peaks 0.0316742081
9663 L1 204 TE_peak all_peaks 0.9026548673
9664 Alu 164 TE_peak all_peaks 0.5342019544
9665 L1 91 not_TE_peak all_peaks 0.0761506276
9666 L1 80 TE_peak all_peaks 1.0000000000
9667 RTE-X 358 TE_peak all_peaks 1.0000000000
9668 L2 70 TE_peak all_peaks 1.0000000000
9669 <NA> NA not_TE_peak all_peaks NA
9670 MIR 146 TE_peak all_peaks 0.9668874172
9671 ERVL 385 TE_peak all_peaks 1.0000000000
9672 Low_complexity 32 TE_peak all_peaks 1.0000000000
9673 hAT-Charlie 66 not_TE_peak all_peaks 0.4925373134
9674 hAT-Charlie 65 not_TE_peak all_peaks 0.2579365079
9675 ERVL-MaLR 254 TE_peak all_peaks 0.6997245179
9676 L1 31 not_TE_peak all_peaks 0.3690476190
9677 Alu 131 TE_peak all_peaks 1.0000000000
9678 SVA 118 not_TE_peak all_peaks 0.0637493247
9679 Simple_repeat 42 TE_peak all_peaks 1.0000000000
9680 Alu 202 TE_peak all_peaks 1.0000000000
9681 ERVL-MaLR 318 TE_peak all_peaks 0.5618374558
9682 Simple_repeat 71 TE_peak all_peaks 1.0000000000
9683 L1 498 not_TE_peak all_peaks 0.3353535354
9684 ERVL 2 not_TE_peak all_peaks 0.0333333333
9685 ERVL 252 TE_peak all_peaks 0.9032258065
9686 Alu 166 TE_peak all_peaks 1.0000000000
9687 TcMar-Tigger 244 not_TE_peak all_peaks 0.2592986185
9688 Alu 295 TE_peak all_peaks 1.0000000000
9689 TcMar-Tigger 28 not_TE_peak all_peaks 0.1081081081
9690 ERVL 439 TE_peak all_peaks 0.8283018868
9691 Alu 90 not_TE_peak all_peaks 0.3202846975
9692 CR1 211 not_TE_peak all_peaks 0.4228456914
9693 tRNA-RTE 78 not_TE_peak all_peaks 0.3861386139
9694 L2 95 TE_peak all_peaks 0.8407079646
9695 hAT-Tip100 101 TE_peak all_peaks 0.8416666667
9696 <NA> NA not_TE_peak all_peaks NA
9697 <NA> NA not_TE_peak all_peaks NA
9698 <NA> NA not_TE_peak all_peaks NA
9699 <NA> NA not_TE_peak all_peaks NA
9700 hAT 118 TE_peak all_peaks 0.6178010471
9701 MIR 60 not_TE_peak all_peaks 0.4000000000
9702 <NA> NA not_TE_peak all_peaks NA
9703 MIR 49 not_TE_peak all_peaks 0.3121019108
9704 MIR 104 not_TE_peak all_peaks 0.4684684685
9705 L2 339 TE_peak all_peaks 0.9237057221
9706 Gypsy 409 TE_peak all_peaks 0.5353403141
9707 MIR 123 TE_peak all_peaks 1.0000000000
9708 MIR 194 TE_peak all_peaks 1.0000000000
9709 <NA> NA not_TE_peak all_peaks NA
9710 Simple_repeat 72 TE_peak all_peaks 1.0000000000
9711 Low_complexity 30 TE_peak all_peaks 1.0000000000
9712 Simple_repeat 36 TE_peak all_peaks 1.0000000000
9713 Simple_repeat 72 TE_peak all_peaks 1.0000000000
9714 Low_complexity 40 TE_peak all_peaks 1.0000000000
9715 Low_complexity 79 TE_peak all_peaks 1.0000000000
9716 Low_complexity 22 TE_peak all_peaks 0.5789473684
9717 DNA? 167 TE_peak all_peaks 1.0000000000
9718 MIR 202 TE_peak all_peaks 1.0000000000
9719 Simple_repeat 29 TE_peak all_peaks 1.0000000000
9720 MIR 101 TE_peak all_peaks 0.9711538462
9721 <NA> NA not_TE_peak all_peaks NA
9722 <NA> NA not_TE_peak all_peaks NA
9723 <NA> NA not_TE_peak all_peaks NA
9724 L1 19 not_TE_peak all_peaks 0.2043010753
9725 L1 83 not_TE_peak all_peaks 0.2677419355
9726 MIR 173 TE_peak all_peaks 0.8650000000
9727 <NA> NA not_TE_peak all_peaks NA
9728 <NA> NA not_TE_peak all_peaks NA
9729 <NA> NA not_TE_peak all_peaks NA
9730 <NA> NA not_TE_peak all_peaks NA
9731 <NA> NA not_TE_peak all_peaks NA
9732 <NA> NA not_TE_peak all_peaks NA
9733 <NA> NA not_TE_peak all_peaks NA
9734 L2 29 not_TE_peak all_peaks 0.2589285714
9735 Low_complexity 18 TE_peak all_peaks 0.6666666667
9736 L2 6 not_TE_peak all_peaks 0.0104347826
9737 L2 161 TE_peak all_peaks 1.0000000000
9738 MIR 66 TE_peak all_peaks 1.0000000000
9739 RTE-BovB 95 TE_peak all_peaks 1.0000000000
9740 L2 250 TE_peak all_peaks 1.0000000000
9741 MIR 27 not_TE_peak all_peaks 0.2093023256
9742 Simple_repeat 49 TE_peak all_peaks 1.0000000000
9743 L2 123 TE_peak all_peaks 1.0000000000
9744 <NA> NA not_TE_peak all_peaks NA
9745 L2 108 TE_peak all_peaks 1.0000000000
9746 L2 307 TE_peak all_peaks 0.9029411765
9747 <NA> NA not_TE_peak all_peaks NA
9748 Simple_repeat 36 TE_peak all_peaks 1.0000000000
9749 TcMar-Tigger 274 TE_peak all_peaks 1.0000000000
9750 MIR 93 TE_peak all_peaks 1.0000000000
9751 <NA> NA not_TE_peak all_peaks NA
9752 <NA> NA not_TE_peak all_peaks NA
9753 <NA> NA not_TE_peak all_peaks NA
9754 <NA> NA not_TE_peak all_peaks NA
9755 <NA> NA not_TE_peak all_peaks NA
9756 <NA> NA not_TE_peak all_peaks NA
9757 <NA> NA not_TE_peak all_peaks NA
9758 hAT-Charlie 157 TE_peak all_peaks 1.0000000000
9759 Simple_repeat 30 TE_peak all_peaks 1.0000000000
9760 Simple_repeat 21 TE_peak all_peaks 1.0000000000
9761 LTR? 159 TE_peak all_peaks 1.0000000000
9762 Simple_repeat 30 TE_peak all_peaks 1.0000000000
9763 ERVL-MaLR 288 TE_peak all_peaks 0.7254408060
9764 <NA> NA not_TE_peak all_peaks NA
9765 ERVL 323 TE_peak all_peaks 0.7083333333
9766 Simple_repeat 77 TE_peak all_peaks 1.0000000000
9767 Simple_repeat 30 TE_peak all_peaks 1.0000000000
9768 <NA> NA not_TE_peak all_peaks NA
9769 <NA> NA not_TE_peak all_peaks NA
9770 <NA> NA not_TE_peak all_peaks NA
9771 <NA> NA not_TE_peak all_peaks NA
9772 L2 712 TE_peak all_peaks 0.5812244898
9773 MIR 110 not_TE_peak all_peaks 0.4471544715
9774 <NA> NA not_TE_peak all_peaks NA
9775 <NA> NA not_TE_peak all_peaks NA
9776 <NA> NA not_TE_peak all_peaks NA
9777 Simple_repeat 459 TE_peak all_peaks 0.7574257426
9778 <NA> NA not_TE_peak all_peaks NA
9779 <NA> NA not_TE_peak all_peaks NA
9780 TcMar-Tigger 304 not_TE_peak all_peaks 0.4662576687
9781 ERVL-MaLR 342 TE_peak all_peaks 0.9144385027
9782 hAT-Charlie 44 not_TE_peak all_peaks 0.2528735632
9783 <NA> NA not_TE_peak all_peaks NA
9784 Low_complexity 45 TE_peak all_peaks 1.0000000000
9785 Simple_repeat 54 TE_peak all_peaks 1.0000000000
9786 Simple_repeat 39 TE_peak all_peaks 1.0000000000
9787 L1 149 TE_peak all_peaks 0.9738562092
9788 TcMar-Tigger 315 TE_peak all_peaks 0.9874608150
9789 L2 127 TE_peak all_peaks 1.0000000000
9790 ERV1 192 TE_peak all_peaks 1.0000000000
9791 RTE-X 219 TE_peak all_peaks 1.0000000000
9792 MIR 136 TE_peak all_peaks 0.8831168831
9793 Alu 142 not_TE_peak all_peaks 0.4913494810
9794 L1 191 TE_peak all_peaks 1.0000000000
9795 L1 833 TE_peak all_peaks 0.7956064947
9796 Alu 305 TE_peak all_peaks 1.0000000000
9797 Alu 38 not_TE_peak all_peaks 0.2483660131
9798 Alu 160 TE_peak all_peaks 1.0000000000
9799 ERVL 713 TE_peak all_peaks 0.9332460733
9800 ERV1 492 TE_peak all_peaks 0.8754448399
9801 Alu 306 TE_peak all_peaks 1.0000000000
9802 <NA> NA not_TE_peak all_peaks NA
9803 L2 394 TE_peak all_peaks 0.7163636364
9804 <NA> NA not_TE_peak all_peaks NA
9805 hAT-Charlie 121 TE_peak all_peaks 0.8897058824
9806 ERV1 115 not_TE_peak all_peaks 0.3034300792
9807 Simple_repeat 29 TE_peak all_peaks 1.0000000000
9808 MIR 89 not_TE_peak all_peaks 0.4027149321
9809 Alu 152 TE_peak all_peaks 0.5241379310
9810 Simple_repeat 28 TE_peak all_peaks 1.0000000000
9811 L2 203 TE_peak all_peaks 1.0000000000
9812 Alu 106 TE_peak all_peaks 1.0000000000
9813 Simple_repeat 28 TE_peak all_peaks 1.0000000000
9814 Alu 75 not_TE_peak all_peaks 0.2199413490
9815 LTR 89 not_TE_peak all_peaks 0.4278846154
9816 L1 110 TE_peak all_peaks 1.0000000000
9817 hAT-Charlie 11 not_TE_peak all_peaks 0.1089108911
9818 Simple_repeat 35 TE_peak all_peaks 1.0000000000
9819 Simple_repeat 40 TE_peak all_peaks 1.0000000000
9820 Low_complexity 55 TE_peak all_peaks 1.0000000000
9821 Simple_repeat 44 TE_peak all_peaks 1.0000000000
9822 Simple_repeat 24 TE_peak all_peaks 1.0000000000
9823 Low_complexity 62 TE_peak all_peaks 1.0000000000
9824 Simple_repeat 42 TE_peak all_peaks 1.0000000000
9825 Low_complexity 37 TE_peak all_peaks 1.0000000000
9826 ERVK 15 not_TE_peak all_peaks 0.0154479918
9827 ERVK 158 TE_peak all_peaks 0.9753086420
9828 L1 104 not_TE_peak all_peaks 0.4792626728
9829 <NA> NA not_TE_peak all_peaks NA
9830 <NA> NA not_TE_peak all_peaks NA
9831 <NA> NA not_TE_peak all_peaks NA
9832 <NA> NA not_TE_peak all_peaks NA
9833 hAT-Charlie 36 not_TE_peak all_peaks 0.1090909091
9834 MIR 128 TE_peak all_peaks 0.5182186235
9835 <NA> NA not_TE_peak all_peaks NA
9836 <NA> NA not_TE_peak all_peaks NA
9837 Simple_repeat 63 TE_peak all_peaks 1.0000000000
9838 ERVL 149 TE_peak all_peaks 1.0000000000
9839 hAT-Charlie 156 TE_peak all_peaks 1.0000000000
9840 L1 166 TE_peak all_peaks 1.0000000000
9841 Simple_repeat 27 TE_peak all_peaks 1.0000000000
9842 Simple_repeat 22 TE_peak all_peaks 1.0000000000
9843 Low_complexity 43 TE_peak all_peaks 1.0000000000
9844 <NA> NA not_TE_peak all_peaks NA
9845 TcMar-Tigger 384 not_TE_peak all_peaks 0.1595346905
9846 <NA> NA not_TE_peak all_peaks NA
9847 <NA> NA not_TE_peak all_peaks NA
9848 MIR 51 not_TE_peak all_peaks 0.3541666667
9849 MIR 212 TE_peak all_peaks 1.0000000000
9850 MIR 151 TE_peak all_peaks 0.9679487179
9851 L1 371 not_TE_peak all_peaks 0.0545748750
9852 <NA> NA not_TE_peak all_peaks NA
9853 Simple_repeat 53 TE_peak all_peaks 1.0000000000
9854 MIR 19 not_TE_peak all_peaks 0.0822510823
9855 L2 65 TE_peak all_peaks 0.5327868852
9856 <NA> NA not_TE_peak all_peaks NA
9857 Simple_repeat 35 TE_peak all_peaks 1.0000000000
9858 Simple_repeat 62 TE_peak all_peaks 1.0000000000
9859 <NA> NA not_TE_peak all_peaks NA
9860 MIR 122 TE_peak all_peaks 0.5727699531
9861 L1 170 TE_peak all_peaks 1.0000000000
9862 CR1 30 not_TE_peak all_peaks 0.3225806452
9863 <NA> NA not_TE_peak all_peaks NA
9864 L2 193 TE_peak all_peaks 1.0000000000
9865 ERVL 65 not_TE_peak all_peaks 0.1009316770
9866 hAT-Charlie 200 TE_peak all_peaks 1.0000000000
9867 L2 90 TE_peak all_peaks 1.0000000000
9868 <NA> NA not_TE_peak all_peaks NA
9869 <NA> NA not_TE_peak all_peaks NA
9870 L2 84 not_TE_peak all_peaks 0.3620689655
9871 MIR 234 TE_peak all_peaks 1.0000000000
9872 ERVL-MaLR 376 TE_peak all_peaks 1.0000000000
9873 ERV1 484 not_TE_peak all_peaks 0.2640480087
9874 MIR 31 not_TE_peak all_peaks 0.2000000000
9875 ERVL 130 not_TE_peak all_peaks 0.1793103448
9876 Simple_repeat 35 TE_peak all_peaks 1.0000000000
9877 <NA> NA not_TE_peak all_peaks NA
9878 MIR 155 TE_peak all_peaks 0.7175925926
9879 L2 208 TE_peak all_peaks 1.0000000000
9880 <NA> NA not_TE_peak all_peaks NA
9881 L1 300 not_TE_peak all_peaks 0.4347826087
9882 Alu 44 not_TE_peak all_peaks 0.1423948220
9883 MIR 70 TE_peak all_peaks 1.0000000000
9884 5S-Deu-L2 96 TE_peak all_peaks 1.0000000000
9885 Simple_repeat 35 TE_peak all_peaks 1.0000000000
9886 <NA> NA not_TE_peak all_peaks NA
9887 MIR 56 not_TE_peak all_peaks 0.2666666667
9888 L2 68 TE_peak all_peaks 1.0000000000
9889 TcMar-Tigger 385 not_TE_peak all_peaks 0.3130081301
9890 <NA> NA not_TE_peak all_peaks NA
9891 Simple_repeat 52 TE_peak all_peaks 1.0000000000
9892 Alu 84 not_TE_peak all_peaks 0.3032490975
9893 <NA> NA not_TE_peak all_peaks NA
9894 Alu 77 not_TE_peak all_peaks 0.2566666667
9895 MIR 41 not_TE_peak all_peaks 0.2928571429
9896 <NA> NA not_TE_peak all_peaks NA
9897 <NA> NA not_TE_peak all_peaks NA
9898 hAT-Charlie 151 TE_peak all_peaks 0.7224880383
9899 <NA> NA not_TE_peak all_peaks NA
9900 hAT-Charlie 127 TE_peak all_peaks 1.0000000000
9901 hAT-Charlie 112 TE_peak all_peaks 1.0000000000
9902 <NA> NA not_TE_peak all_peaks NA
9903 Alu 44 not_TE_peak all_peaks 0.1456953642
9904 L2 86 TE_peak all_peaks 0.6370370370
9905 Alu 1 not_TE_peak all_peaks 0.0032154341
9906 TcMar-Tigger 117 TE_peak all_peaks 1.0000000000
9907 ERVL-MaLR 293 TE_peak all_peaks 0.8300283286
9908 MIR 73 not_TE_peak all_peaks 0.4294117647
9909 hAT-Charlie 76 TE_peak all_peaks 1.0000000000
9910 Alu 56 not_TE_peak all_peaks 0.1830065359
9911 <NA> NA not_TE_peak all_peaks NA
9912 L2 319 TE_peak all_peaks 0.7975000000
9913 RTE-X 125 TE_peak all_peaks 0.5555555556
9914 L2 131 TE_peak all_peaks 1.0000000000
9915 <NA> NA not_TE_peak all_peaks NA
9916 <NA> NA not_TE_peak all_peaks NA
9917 Alu 284 TE_peak all_peaks 1.0000000000
9918 ERV1 598 TE_peak all_peaks 0.6500000000
9919 ERVL 98 TE_peak all_peaks 0.8166666667
9920 CR1 10 not_TE_peak all_peaks 0.1851851852
9921 L2 61 not_TE_peak all_peaks 0.1986970684
9922 <NA> NA not_TE_peak all_peaks NA
9923 L1 446 TE_peak all_peaks 0.9195876289
9924 Alu 33 not_TE_peak all_peaks 0.1918604651
9925 L2 121 TE_peak all_peaks 1.0000000000
9926 <NA> NA not_TE_peak all_peaks NA
9927 <NA> NA not_TE_peak all_peaks NA
9928 Simple_repeat 45 TE_peak all_peaks 1.0000000000
9929 hAT-Tip100 96 TE_peak all_peaks 1.0000000000
9930 ERVL-MaLR 162 not_TE_peak all_peaks 0.4807121662
9931 <NA> NA not_TE_peak all_peaks NA
9932 <NA> NA not_TE_peak all_peaks NA
9933 <NA> NA not_TE_peak all_peaks NA
9934 L1 502 not_TE_peak all_peaks 0.4674115456
9935 MIR 10 not_TE_peak all_peaks 0.0602409639
9936 <NA> NA not_TE_peak all_peaks NA
9937 L2 28 not_TE_peak all_peaks 0.1497326203
9938 hAT-Tip100 612 TE_peak all_peaks 0.8869565217
9939 <NA> NA not_TE_peak all_peaks NA
9940 <NA> NA not_TE_peak all_peaks NA
9941 L2 119 TE_peak all_peaks 1.0000000000
9942 5S-Deu-L2 161 TE_peak all_peaks 1.0000000000
9943 MIR 110 TE_peak all_peaks 1.0000000000
9944 <NA> NA not_TE_peak all_peaks NA
9945 <NA> NA not_TE_peak all_peaks NA
9946 <NA> NA not_TE_peak all_peaks NA
9947 Simple_repeat 26 TE_peak all_peaks 0.6666666667
9948 Simple_repeat 44 TE_peak all_peaks 1.0000000000
9949 Low_complexity 43 TE_peak all_peaks 1.0000000000
9950 <NA> NA not_TE_peak all_peaks NA
9951 L1 60 not_TE_peak all_peaks 0.0211118930
9952 MIR 219 TE_peak all_peaks 1.0000000000
9953 <NA> NA not_TE_peak all_peaks NA
9954 Simple_repeat 43 TE_peak all_peaks 1.0000000000
9955 Alu 14 not_TE_peak all_peaks 0.1093750000
9956 L2 72 TE_peak all_peaks 1.0000000000
9957 ERV1 162 not_TE_peak all_peaks 0.3785046729
9958 ERV1 633 TE_peak all_peaks 0.9308823529
9959 Alu 255 TE_peak all_peaks 1.0000000000
9960 L1 54 not_TE_peak all_peaks 0.1888111888
9961 ERV1 84 TE_peak all_peaks 0.7304347826
9962 Alu 176 TE_peak all_peaks 1.0000000000
9963 L2 299 not_TE_peak all_peaks 0.4265335235
9964 L1 113 TE_peak all_peaks 1.0000000000
9965 L1 341 not_TE_peak all_peaks 0.2699920823
9966 <NA> NA not_TE_peak all_peaks NA
9967 hAT-Blackjack 37 not_TE_peak all_peaks 0.1042253521
9968 Low_complexity 75 TE_peak all_peaks 1.0000000000
9969 hAT-Charlie 30 not_TE_peak all_peaks 0.1754385965
9970 ERV1 300 TE_peak all_peaks 0.5692599620
9971 MIR 16 not_TE_peak all_peaks 0.1415929204
9972 L2 44 TE_peak all_peaks 0.6666666667
9973 ERV1 112 TE_peak all_peaks 1.0000000000
9974 ERV1 9 not_TE_peak all_peaks 0.0278637771
9975 <NA> NA not_TE_peak all_peaks NA
9976 hAT 90 TE_peak all_peaks 1.0000000000
9977 L2 318 TE_peak all_peaks 0.5213114754
9978 <NA> NA not_TE_peak all_peaks NA
9979 L2 59 not_TE_peak all_peaks 0.1435523114
9980 MIR 100 TE_peak all_peaks 1.0000000000
9981 L2 380 TE_peak all_peaks 0.9947643979
9982 L2 183 TE_peak all_peaks 0.5069252078
9983 MIR 84 TE_peak all_peaks 1.0000000000
9984 Simple_repeat 16 TE_peak all_peaks 1.0000000000
9985 Simple_repeat 27 TE_peak all_peaks 1.0000000000
9986 Simple_repeat 22 TE_peak all_peaks 1.0000000000
9987 Low_complexity 113 TE_peak all_peaks 1.0000000000
9988 Simple_repeat 48 TE_peak all_peaks 1.0000000000
9989 ERVL-MaLR 141 not_TE_peak all_peaks 0.4051724138
9990 <NA> NA not_TE_peak all_peaks NA
9991 MIR 55 not_TE_peak all_peaks 0.3072625698
9992 MIR 62 not_TE_peak all_peaks 0.2897196262
9993 TcMar-Tigger 334 not_TE_peak all_peaks 0.1412262156
9994 L2 104 not_TE_peak all_peaks 0.3823529412
9995 Simple_repeat 101 TE_peak all_peaks 1.0000000000
9996 <NA> NA not_TE_peak all_peaks NA
9997 <NA> NA not_TE_peak all_peaks NA
9998 <NA> NA not_TE_peak all_peaks NA
9999 <NA> NA not_TE_peak all_peaks NA
10000 Alu 68 not_TE_peak all_peaks 0.2320819113
10001 Alu 255 TE_peak all_peaks 0.7894736842
10002 <NA> NA not_TE_peak all_peaks NA
10003 Simple_repeat 43 TE_peak all_peaks 1.0000000000
10004 <NA> NA not_TE_peak all_peaks NA
10005 L2 65 TE_peak all_peaks 0.6989247312
10006 MIR 148 TE_peak all_peaks 1.0000000000
10007 ERV1 232 not_TE_peak all_peaks 0.3630672926
10008 RTE-BovB 74 not_TE_peak all_peaks 0.4683544304
10009 <NA> NA not_TE_peak all_peaks NA
10010 MIR 151 TE_peak all_peaks 0.7743589744
10011 <NA> NA not_TE_peak all_peaks NA
10012 L2 38 not_TE_peak all_peaks 0.2500000000
10013 L2 276 TE_peak all_peaks 0.5009074410
10014 MIR 171 TE_peak all_peaks 0.7276595745
10015 ERVL? 112 not_TE_peak all_peaks 0.4827586207
10016 L2 99 not_TE_peak all_peaks 0.4439461883
10017 MIR 74 TE_peak all_peaks 1.0000000000
10018 <NA> NA not_TE_peak all_peaks NA
10019 <NA> NA not_TE_peak all_peaks NA
10020 Alu 220 TE_peak all_peaks 0.7508532423
10021 L2 45 not_TE_peak all_peaks 0.4326923077
10022 ERVL-MaLR 135 TE_peak all_peaks 1.0000000000
10023 L2 15 not_TE_peak all_peaks 0.3000000000
10024 <NA> NA not_TE_peak all_peaks NA
10025 <NA> NA not_TE_peak all_peaks NA
10026 <NA> NA not_TE_peak all_peaks NA
10027 MIR 117 TE_peak all_peaks 1.0000000000
10028 Simple_repeat 54 TE_peak all_peaks 1.0000000000
10029 Simple_repeat 40 TE_peak all_peaks 1.0000000000
10030 Simple_repeat 11 TE_peak all_peaks 1.0000000000
10031 Alu 120 TE_peak all_peaks 1.0000000000
10032 Alu 63 not_TE_peak all_peaks 0.2266187050
10033 Simple_repeat 38 TE_peak all_peaks 1.0000000000
10034 Alu 16 not_TE_peak all_peaks 0.0565371025
10035 L2 14 not_TE_peak all_peaks 0.0818713450
10036 MIR 133 TE_peak all_peaks 1.0000000000
10037 Alu 42 not_TE_peak all_peaks 0.1333333333
10038 Alu 252 TE_peak all_peaks 0.8689655172
10039 Simple_repeat 37 TE_peak all_peaks 1.0000000000
10040 Simple_repeat 29 TE_peak all_peaks 1.0000000000
10041 <NA> NA not_TE_peak all_peaks NA
10042 Alu 261 TE_peak all_peaks 0.8055555556
10043 hAT-Tip100 327 TE_peak all_peaks 0.5808170515
10044 <NA> NA not_TE_peak all_peaks NA
10045 L1 250 not_TE_peak all_peaks 0.2821670429
10046 Simple_repeat 30 TE_peak all_peaks 1.0000000000
10047 L1 33 TE_peak all_peaks 1.0000000000
10048 TcMar-Tigger 315 TE_peak all_peaks 1.0000000000
10049 Alu 159 TE_peak all_peaks 0.5112540193
10050 <NA> NA not_TE_peak all_peaks NA
10051 <NA> NA not_TE_peak all_peaks NA
10052 <NA> NA not_TE_peak all_peaks NA
10053 <NA> NA not_TE_peak all_peaks NA
10054 Alu 14 not_TE_peak all_peaks 0.0492957746
10055 L2 413 TE_peak all_peaks 0.8343434343
10056 <NA> NA not_TE_peak all_peaks NA
10057 L2 222 TE_peak all_peaks 1.0000000000
10058 MIR 181 TE_peak all_peaks 0.7869565217
10059 MIR 131 TE_peak all_peaks 1.0000000000
10060 L2 215 TE_peak all_peaks 1.0000000000
10061 Simple_repeat 26 TE_peak all_peaks 1.0000000000
10062 MIR 83 TE_peak all_peaks 1.0000000000
10063 Simple_repeat 66 TE_peak all_peaks 1.0000000000
10064 <NA> NA not_TE_peak all_peaks NA
10065 Simple_repeat 26 TE_peak all_peaks 1.0000000000
10066 L1 472 not_TE_peak all_peaks 0.0825607836
10067 <NA> NA not_TE_peak all_peaks NA
10068 L1 722 not_TE_peak all_peaks 0.2538677918
10069 MIR 119 TE_peak all_peaks 1.0000000000
10070 MIR 196 TE_peak all_peaks 1.0000000000
10071 ERVK 308 not_TE_peak all_peaks 0.2964388835
10072 <NA> NA not_TE_peak all_peaks NA
10073 Alu 35 not_TE_peak all_peaks 0.1140065147
10074 ERVL-MaLR 353 TE_peak all_peaks 1.0000000000
10075 ERVL-MaLR 91 TE_peak all_peaks 1.0000000000
10076 ERVL-MaLR 239 TE_peak all_peaks 0.6947674419
10077 Alu 93 not_TE_peak all_peaks 0.2980769231
10078 L2 82 TE_peak all_peaks 0.5774647887
10079 <NA> NA not_TE_peak all_peaks NA
10080 <NA> NA not_TE_peak all_peaks NA
10081 Simple_repeat 30 TE_peak all_peaks 1.0000000000
10082 Simple_repeat 35 TE_peak all_peaks 1.0000000000
10083 Simple_repeat 97 TE_peak all_peaks 1.0000000000
10084 L1 315 TE_peak all_peaks 0.7258064516
10085 Alu 46 not_TE_peak all_peaks 0.1916666667
10086 Alu 106 TE_peak all_peaks 1.0000000000
10087 Alu 20 not_TE_peak all_peaks 0.1724137931
10088 Simple_repeat 40 TE_peak all_peaks 1.0000000000
10089 L2 51 TE_peak all_peaks 1.0000000000
10090 ERV1 304 TE_peak all_peaks 1.0000000000
10091 Alu 127 TE_peak all_peaks 1.0000000000
10092 Alu 153 TE_peak all_peaks 1.0000000000
10093 ERV1 21 not_TE_peak all_peaks 0.1794871795
10094 <NA> NA not_TE_peak all_peaks NA
10095 hAT-Tip100 86 TE_peak all_peaks 1.0000000000
10096 Alu 30 not_TE_peak all_peaks 0.0974025974
10097 L2 272 not_TE_peak all_peaks 0.3546284224
10098 Alu 50 not_TE_peak all_peaks 0.3649635036
10099 Alu 164 TE_peak all_peaks 1.0000000000
10100 hAT-Tip100 58 TE_peak all_peaks 0.5225225225
10101 L2 76 TE_peak all_peaks 1.0000000000
10102 Simple_repeat 53 TE_peak all_peaks 1.0000000000
10103 hAT-Charlie 6 not_TE_peak all_peaks 0.0223880597
10104 L2 386 TE_peak all_peaks 0.7228464419
10105 ERVL 111 not_TE_peak all_peaks 0.4252873563
10106 L2 319 not_TE_peak all_peaks 0.3509350935
10107 Alu 55 TE_peak all_peaks 0.5092592593
10108 L2 398 not_TE_peak all_peaks 0.4368825467
10109 ERV1 250 TE_peak all_peaks 0.7936507937
10110 ERVK 345 TE_peak all_peaks 0.7371794872
10111 L1 47 not_TE_peak all_peaks 0.0765472313
10112 MIR 14 not_TE_peak all_peaks 0.0903225806
10113 L2 121 not_TE_peak all_peaks 0.2454361055
10114 Alu 104 TE_peak all_peaks 0.8595041322
10115 tRNA-RTE 164 TE_peak all_peaks 1.0000000000
10116 Simple_repeat 70 TE_peak all_peaks 1.0000000000
10117 Simple_repeat 24 TE_peak all_peaks 1.0000000000
10118 TcMar-Tigger 76 not_TE_peak all_peaks 0.3838383838
10119 MIR 36 not_TE_peak all_peaks 0.4800000000
10120 ERVL 156 not_TE_peak all_peaks 0.2151724138
10121 ERVL 336 TE_peak all_peaks 1.0000000000
10122 Alu 36 not_TE_peak all_peaks 0.4337349398
10123 L1 10 not_TE_peak all_peaks 0.0613496933
10124 L1 126 TE_peak all_peaks 0.9000000000
10125 L2 49 not_TE_peak all_peaks 0.4622641509
10126 ERVL-MaLR 452 TE_peak all_peaks 0.7833622184
10127 hAT-Charlie 6 not_TE_peak all_peaks 0.0271493213
10128 MIR 87 TE_peak all_peaks 1.0000000000
10129 MIR 72 TE_peak all_peaks 0.9230769231
10130 L2 379 TE_peak all_peaks 1.0000000000
10131 MIR 134 TE_peak all_peaks 0.6666666667
10132 hAT-Tip100 454 not_TE_peak all_peaks 0.4908108108
10133 MIR 115 TE_peak all_peaks 1.0000000000
10134 ERVL-MaLR 380 TE_peak all_peaks 1.0000000000
10135 <NA> NA not_TE_peak all_peaks NA
10136 <NA> NA not_TE_peak all_peaks NA
10137 L1 262 TE_peak all_peaks 0.8972602740
10138 Alu 156 TE_peak all_peaks 0.9750000000
10139 Simple_repeat 23 TE_peak all_peaks 1.0000000000
10140 L2 260 not_TE_peak all_peaks 0.4761904762
10141 TcMar-Tigger 225 not_TE_peak all_peaks 0.1008064516
10142 L1 590 TE_peak all_peaks 0.8452722063
10143 Alu 53 not_TE_peak all_peaks 0.1737704918
10144 Simple_repeat 27 TE_peak all_peaks 1.0000000000
10145 Simple_repeat 22 TE_peak all_peaks 1.0000000000
10146 Alu 14 not_TE_peak all_peaks 0.1000000000
10147 ERV1 461 TE_peak all_peaks 0.6700581395
10148 Alu 4 not_TE_peak all_peaks 0.0129449838
10149 Alu 170 TE_peak all_peaks 0.5862068966
10150 hAT-Charlie 15 not_TE_peak all_peaks 0.1034482759
10151 <NA> NA not_TE_peak all_peaks NA
10152 ERVL-MaLR 70 TE_peak all_peaks 1.0000000000
10153 Simple_repeat 26 TE_peak all_peaks 1.0000000000
10154 Simple_repeat 51 TE_peak all_peaks 1.0000000000
10155 L1 389 not_TE_peak all_peaks 0.1280447663
10156 L1 143 TE_peak all_peaks 0.6682242991
10157 Alu 221 TE_peak all_peaks 0.7647058824
10158 ERV1 335 not_TE_peak all_peaks 0.1542357274
10159 ERVK 358 TE_peak all_peaks 0.8248847926
10160 Simple_repeat 52 TE_peak all_peaks 1.0000000000
10161 Simple_repeat 88 TE_peak all_peaks 1.0000000000
10162 CR1 97 TE_peak all_peaks 0.5606936416
10163 <NA> NA not_TE_peak all_peaks NA
10164 L2 21 not_TE_peak all_peaks 0.1510791367
10165 Alu 8 not_TE_peak all_peaks 0.0305343511
10166 <NA> NA not_TE_peak all_peaks NA
10167 <NA> NA not_TE_peak all_peaks NA
10168 <NA> NA not_TE_peak all_peaks NA
10169 LTR? 114 TE_peak all_peaks 1.0000000000
10170 Alu 71 not_TE_peak all_peaks 0.4034090909
10171 <NA> NA not_TE_peak all_peaks NA
10172 hAT-Charlie 264 TE_peak all_peaks 1.0000000000
10173 Alu 62 not_TE_peak all_peaks 0.1949685535
10174 <NA> NA not_TE_peak all_peaks NA
10175 <NA> NA not_TE_peak all_peaks NA
10176 <NA> NA not_TE_peak all_peaks NA
10177 <NA> NA not_TE_peak all_peaks NA
10178 <NA> NA not_TE_peak all_peaks NA
10179 <NA> NA not_TE_peak all_peaks NA
10180 <NA> NA not_TE_peak all_peaks NA
10181 TcMar-Tigger 191 TE_peak all_peaks 0.6141479100
10182 CR1 944 TE_peak all_peaks 0.8130921619
10183 Alu 188 TE_peak all_peaks 0.6308724832
10184 RTE-BovB 164 TE_peak all_peaks 1.0000000000
10185 L2 132 not_TE_peak all_peaks 0.3464566929
10186 Low_complexity 40 TE_peak all_peaks 1.0000000000
10187 Low_complexity 41 TE_peak all_peaks 1.0000000000
10188 Simple_repeat 45 TE_peak all_peaks 1.0000000000
10189 Simple_repeat 37 TE_peak all_peaks 1.0000000000
10190 hAT-Charlie 120 TE_peak all_peaks 1.0000000000
10191 <NA> NA not_TE_peak all_peaks NA
10192 <NA> NA not_TE_peak all_peaks NA
10193 L2 136 TE_peak all_peaks 0.6903553299
10194 hAT-Charlie 183 TE_peak all_peaks 1.0000000000
10195 <NA> NA not_TE_peak all_peaks NA
10196 MIR 121 TE_peak all_peaks 0.6836158192
10197 L1 60 TE_peak all_peaks 1.0000000000
10198 ERVL-MaLR 193 not_TE_peak all_peaks 0.4447004608
10199 <NA> NA not_TE_peak all_peaks NA
10200 <NA> NA not_TE_peak all_peaks NA
10201 <NA> NA not_TE_peak all_peaks NA
10202 MIR 93 TE_peak all_peaks 0.7153846154
10203 TcMar-Tigger 196 not_TE_peak all_peaks 0.1673783091
10204 TcMar-Tigger 292 not_TE_peak all_peaks 0.2493595218
10205 L2 27 not_TE_peak all_peaks 0.0823170732
10206 TcMar-Tigger 222 not_TE_peak all_peaks 0.4988764045
10207 L1 64 not_TE_peak all_peaks 0.0956651719
10208 snRNA 35 TE_peak all_peaks 1.0000000000
10209 MIR 94 TE_peak all_peaks 1.0000000000
10210 <NA> NA not_TE_peak all_peaks NA
10211 ERV1 70 not_TE_peak all_peaks 0.3804347826
10212 Alu 189 TE_peak all_peaks 0.6096774194
10213 ERVL 377 TE_peak all_peaks 0.9106280193
10214 MIR 167 TE_peak all_peaks 1.0000000000
10215 tRNA 85 TE_peak all_peaks 1.0000000000
10216 Simple_repeat 27 TE_peak all_peaks 1.0000000000
10217 hAT-Charlie 89 TE_peak all_peaks 0.7355371901
10218 ERVK 177 not_TE_peak all_peaks 0.1839916840
10219 <NA> NA not_TE_peak all_peaks NA
10220 Alu 263 TE_peak all_peaks 0.8945578231
10221 Simple_repeat 27 TE_peak all_peaks 1.0000000000
10222 Simple_repeat 79 TE_peak all_peaks 1.0000000000
10223 TcMar-Tigger 623 TE_peak all_peaks 0.7506024096
10224 ERVL-MaLR 252 TE_peak all_peaks 0.7590361446
10225 <NA> NA not_TE_peak all_peaks NA
10226 L2 424 TE_peak all_peaks 0.9137931034
10227 <NA> NA not_TE_peak all_peaks NA
10228 MIR 22 not_TE_peak all_peaks 0.0859375000
10229 ERVK 352 TE_peak all_peaks 0.9591280654
10230 <NA> NA not_TE_peak all_peaks NA
10231 MIR 51 not_TE_peak all_peaks 0.3617021277
10232 <NA> NA not_TE_peak all_peaks NA
10233 RTE-BovB 5 not_TE_peak all_peaks 0.0793650794
10234 Simple_repeat 25 TE_peak all_peaks 1.0000000000
10235 L2 127 not_TE_peak all_peaks 0.4319727891
10236 <NA> NA not_TE_peak all_peaks NA
10237 <NA> NA not_TE_peak all_peaks NA
10238 MIR 96 TE_peak all_peaks 0.5517241379
10239 Simple_repeat 47 TE_peak all_peaks 1.0000000000
10240 hAT-Tip100 56 not_TE_peak all_peaks 0.4827586207
10241 hAT-Tip100 103 TE_peak all_peaks 1.0000000000
10242 ERVL-MaLR 126 TE_peak all_peaks 0.6331658291
10243 Alu 44 not_TE_peak all_peaks 0.1560283688
10244 Simple_repeat 34 TE_peak all_peaks 1.0000000000
10245 <NA> NA not_TE_peak all_peaks NA
10246 L1 41 not_TE_peak all_peaks 0.1595330739
10247 <NA> NA not_TE_peak all_peaks NA
10248 MIR 207 TE_peak all_peaks 1.0000000000
10249 <NA> NA not_TE_peak all_peaks NA
10250 MIR 72 not_TE_peak all_peaks 0.3200000000
10251 ERVL-MaLR 5 not_TE_peak all_peaks 0.0118483412
10252 <NA> NA not_TE_peak all_peaks NA
10253 <NA> NA not_TE_peak all_peaks NA
10254 ERVL 344 TE_peak all_peaks 1.0000000000
10255 ERVL-MaLR 211 TE_peak all_peaks 0.7201365188
10256 L2 104 TE_peak all_peaks 1.0000000000
10257 L2 73 not_TE_peak all_peaks 0.2570422535
10258 MIR 81 not_TE_peak all_peaks 0.4111675127
10259 L2 101 not_TE_peak all_peaks 0.3447098976
10260 L1 189 not_TE_peak all_peaks 0.4334862385
10261 Alu 95 not_TE_peak all_peaks 0.3084415584
10262 L2 97 not_TE_peak all_peaks 0.3255033557
10263 L2 120 not_TE_peak all_peaks 0.4878048780
10264 RTE-X 177 TE_peak all_peaks 0.5531250000
10265 TcMar-Tigger 73 TE_peak all_peaks 1.0000000000
10266 <NA> NA not_TE_peak all_peaks NA
10267 <NA> NA not_TE_peak all_peaks NA
10268 <NA> NA not_TE_peak all_peaks NA
10269 MIR 143 TE_peak all_peaks 1.0000000000
10270 <NA> NA not_TE_peak all_peaks NA
10271 L1 348 TE_peak all_peaks 0.9255319149
10272 MIR 147 TE_peak all_peaks 1.0000000000
10273 L1 129 TE_peak all_peaks 1.0000000000
10274 MIR 14 not_TE_peak all_peaks 0.3589743590
10275 MIR 145 TE_peak all_peaks 0.6016597510
10276 <NA> NA not_TE_peak all_peaks NA
10277 hAT-Charlie 245 TE_peak all_peaks 1.0000000000
10278 Simple_repeat 35 TE_peak all_peaks 1.0000000000
10279 Low_complexity 36 TE_peak all_peaks 1.0000000000
10280 ERVL-MaLR 407 TE_peak all_peaks 0.7359855335
10281 hAT-Charlie 7 not_TE_peak all_peaks 0.0307017544
10282 L2 126 TE_peak all_peaks 1.0000000000
10283 Alu 126 not_TE_peak all_peaks 0.4421052632
10284 MIR 128 TE_peak all_peaks 1.0000000000
10285 MIR 209 TE_peak all_peaks 1.0000000000
10286 hAT-Charlie 81 not_TE_peak all_peaks 0.1603960396
10287 L1 810 not_TE_peak all_peaks 0.2367728734
10288 ERVL-MaLR 102 TE_peak all_peaks 1.0000000000
10289 L2 72 not_TE_peak all_peaks 0.2360655738
10290 <NA> NA not_TE_peak all_peaks NA
10291 <NA> NA not_TE_peak all_peaks NA
10292 ERVL 122 TE_peak all_peaks 0.6853932584
10293 <NA> NA not_TE_peak all_peaks NA
10294 RTE-X 83 TE_peak all_peaks 1.0000000000
10295 Simple_repeat 38 TE_peak all_peaks 1.0000000000
10296 L2 636 TE_peak all_peaks 0.7344110855
10297 L2 156 TE_peak all_peaks 1.0000000000
10298 <NA> NA not_TE_peak all_peaks NA
10299 <NA> NA not_TE_peak all_peaks NA
10300 ERV1 62 not_TE_peak all_peaks 0.1428571429
10301 MIR 106 TE_peak all_peaks 1.0000000000
10302 MIR 27 not_TE_peak all_peaks 0.2250000000
10303 L2 68 TE_peak all_peaks 1.0000000000
10304 MIR 106 TE_peak all_peaks 1.0000000000
10305 Alu 26 not_TE_peak all_peaks 0.0881355932
10306 <NA> NA not_TE_peak all_peaks NA
10307 ERVL 268 TE_peak all_peaks 0.5942350333
10308 <NA> NA not_TE_peak all_peaks NA
10309 L2 49 TE_peak all_peaks 1.0000000000
10310 MIR 141 TE_peak all_peaks 0.7704918033
10311 ERVL 377 TE_peak all_peaks 0.8726851852
10312 Alu 15 not_TE_peak all_peaks 0.0684931507
10313 Alu 138 TE_peak all_peaks 1.0000000000
10314 <NA> NA not_TE_peak all_peaks NA
10315 <NA> NA not_TE_peak all_peaks NA
10316 ERVL-MaLR 303 TE_peak all_peaks 1.0000000000
10317 L2 21 not_TE_peak all_peaks 0.1627906977
10318 MIR 239 TE_peak all_peaks 1.0000000000
10319 L1 131 TE_peak all_peaks 1.0000000000
10320 hAT-Tip100 70 TE_peak all_peaks 1.0000000000
10321 MIR 15 not_TE_peak all_peaks 0.1351351351
10322 Simple_repeat 50 TE_peak all_peaks 1.0000000000
10323 ERV1 52 not_TE_peak all_peaks 0.0955882353
10324 <NA> NA not_TE_peak all_peaks NA
10325 L1 20 not_TE_peak all_peaks 0.0749063670
10326 hAT-Charlie 184 TE_peak all_peaks 1.0000000000
10327 L1 1 not_TE_peak all_peaks 0.0101010101
10328 L1 117 not_TE_peak all_peaks 0.1226415094
10329 MIR 132 TE_peak all_peaks 1.0000000000
10330 Simple_repeat 77 TE_peak all_peaks 1.0000000000
10331 Alu 207 TE_peak all_peaks 0.6634615385
10332 hAT 185 TE_peak all_peaks 1.0000000000
10333 TcMar-Tigger 36 not_TE_peak all_peaks 0.1065088757
10334 hAT-Charlie 114 TE_peak all_peaks 1.0000000000
10335 hAT-Charlie 225 TE_peak all_peaks 1.0000000000
10336 L2 189 TE_peak all_peaks 0.9264705882
10337 MIR 6 not_TE_peak all_peaks 0.0441176471
10338 hAT-Charlie 171 TE_peak all_peaks 1.0000000000
10339 Simple_repeat 28 TE_peak all_peaks 1.0000000000
10340 hAT-Charlie 35 TE_peak all_peaks 1.0000000000
10341 Simple_repeat 12 TE_peak all_peaks 0.6000000000
10342 <NA> NA not_TE_peak all_peaks NA
10343 <NA> NA not_TE_peak all_peaks NA
10344 <NA> NA not_TE_peak all_peaks NA
10345 <NA> NA not_TE_peak all_peaks NA
10346 <NA> NA not_TE_peak all_peaks NA
10347 <NA> NA not_TE_peak all_peaks NA
10348 <NA> NA not_TE_peak all_peaks NA
10349 <NA> NA not_TE_peak all_peaks NA
10350 Unknown 75 TE_peak all_peaks 1.0000000000
10351 CR1 337 TE_peak all_peaks 0.7659090909
10352 Low_complexity 32 TE_peak all_peaks 1.0000000000
10353 Simple_repeat 25 TE_peak all_peaks 1.0000000000
10354 Simple_repeat 41 TE_peak all_peaks 1.0000000000
10355 Simple_repeat 53 TE_peak all_peaks 1.0000000000
10356 L2 365 TE_peak all_peaks 0.7749469214
10357 ERVL-MaLR 37 not_TE_peak all_peaks 0.1485943775
10358 Alu 115 not_TE_peak all_peaks 0.3965517241
10359 ERVL 172 not_TE_peak all_peaks 0.3121597096
10360 Simple_repeat 45 TE_peak all_peaks 1.0000000000
10361 Simple_repeat 41 TE_peak all_peaks 1.0000000000
10362 Simple_repeat 42 TE_peak all_peaks 1.0000000000
10363 L2 13 not_TE_peak all_peaks 0.0562770563
10364 ERVL-MaLR 419 TE_peak all_peaks 0.8586065574
10365 L2 117 TE_peak all_peaks 0.5969387755
10366 ERVL-MaLR 293 TE_peak all_peaks 1.0000000000
10367 L1 300 not_TE_peak all_peaks 0.4444444444
10368 ERVL-MaLR 220 TE_peak all_peaks 0.8906882591
10369 Alu 137 TE_peak all_peaks 1.0000000000
10370 MIR 86 TE_peak all_peaks 1.0000000000
10371 MIR 91 TE_peak all_peaks 1.0000000000
10372 Alu 73 not_TE_peak all_peaks 0.2288401254
10373 Simple_repeat 22 TE_peak all_peaks 1.0000000000
10374 <NA> NA not_TE_peak all_peaks NA
10375 Alu 234 TE_peak all_peaks 0.8327402135
10376 Alu 133 TE_peak all_peaks 0.5635593220
10377 hAT-Charlie 183 TE_peak all_peaks 0.9289340102
10378 Simple_repeat 21 TE_peak all_peaks 1.0000000000
10379 ERVL-MaLR 215 TE_peak all_peaks 1.0000000000
10380 L2 130 TE_peak all_peaks 0.6190476190
10381 Alu 76 TE_peak all_peaks 0.5390070922
10382 Simple_repeat 25 TE_peak all_peaks 1.0000000000
10383 <NA> NA not_TE_peak all_peaks NA
10384 ERV1 419 TE_peak all_peaks 0.9088937093
10385 MIR 197 TE_peak all_peaks 1.0000000000
10386 Simple_repeat 42 TE_peak all_peaks 1.0000000000
10387 L1 359 TE_peak all_peaks 1.0000000000
10388 L2 617 TE_peak all_peaks 0.9463190184
10389 L1 42 TE_peak all_peaks 1.0000000000
10390 L1 2 not_TE_peak all_peaks 0.0119760479
10391 TcMar-Tigger 254 TE_peak all_peaks 0.5381355932
10392 Alu 133 TE_peak all_peaks 0.8260869565
10393 hAT-Charlie 151 TE_peak all_peaks 0.6958525346
10394 L2 150 TE_peak all_peaks 1.0000000000
10395 L2 74 not_TE_peak all_peaks 0.2596491228
10396 <NA> NA not_TE_peak all_peaks NA
10397 L2 86 TE_peak all_peaks 0.5810810811
10398 ERVL-MaLR 378 TE_peak all_peaks 0.8094218415
10399 MIR 100 TE_peak all_peaks 0.6711409396
10400 L2 71 TE_peak all_peaks 1.0000000000
10401 Simple_repeat 102 TE_peak all_peaks 1.0000000000
10402 <NA> NA not_TE_peak all_peaks NA
10403 Simple_repeat 22 TE_peak all_peaks 1.0000000000
10404 ERVL 139 TE_peak all_peaks 0.7808988764
10405 <NA> NA not_TE_peak all_peaks NA
10406 <NA> NA not_TE_peak all_peaks NA
10407 L2 20 not_TE_peak all_peaks 0.2298850575
10408 L2 264 TE_peak all_peaks 1.0000000000
10409 L2 108 not_TE_peak all_peaks 0.3600000000
10410 MIR 186 TE_peak all_peaks 1.0000000000
10411 hAT-Tip100 65 not_TE_peak all_peaks 0.1158645276
10412 L2 3 not_TE_peak all_peaks 0.0103448276
10413 MIR 94 TE_peak all_peaks 1.0000000000
10414 <NA> NA not_TE_peak all_peaks NA
10415 L2 120 TE_peak all_peaks 1.0000000000
10416 MIR 220 TE_peak all_peaks 1.0000000000
10417 <NA> NA not_TE_peak all_peaks NA
10418 TcMar-Tigger 52 not_TE_peak all_peaks 0.1498559078
10419 Simple_repeat 35 TE_peak all_peaks 1.0000000000
10420 MIR 230 TE_peak all_peaks 1.0000000000
10421 MIR 140 TE_peak all_peaks 0.7821229050
10422 ERV1 240 not_TE_peak all_peaks 0.4687500000
10423 ERVL 157 TE_peak all_peaks 0.5322033898
10424 <NA> NA not_TE_peak all_peaks NA
10425 <NA> NA not_TE_peak all_peaks NA
10426 L2 552 TE_peak all_peaks 0.7225130890
10427 L2 369 not_TE_peak all_peaks 0.4226804124
10428 L1 69 not_TE_peak all_peaks 0.4312500000
10429 <NA> NA not_TE_peak all_peaks NA
10430 <NA> NA not_TE_peak all_peaks NA
10431 L1 435 not_TE_peak all_peaks 0.0732816712
10432 L1 127 TE_peak all_peaks 0.6719576720
10433 L1 169 not_TE_peak all_peaks 0.0550130208
10434 Simple_repeat 37 TE_peak all_peaks 1.0000000000
10435 ERVL-MaLR 158 TE_peak all_peaks 1.0000000000
10436 L2 74 not_TE_peak all_peaks 0.1564482030
10437 ERVL-MaLR 213 TE_peak all_peaks 1.0000000000
10438 <NA> NA not_TE_peak all_peaks NA
10439 Simple_repeat 21 not_TE_peak all_peaks 0.4038461538
10440 L1 309 not_TE_peak all_peaks 0.1200000000
10441 L2 541 TE_peak all_peaks 0.9376083189
10442 Unknown 105 not_TE_peak all_peaks 0.3431372549
10443 <NA> NA not_TE_peak all_peaks NA
10444 TcMar-Tigger 395 not_TE_peak all_peaks 0.2459526775
10445 L2 10 not_TE_peak all_peaks 0.0303951368
10446 ERVL-MaLR 485 TE_peak all_peaks 1.0000000000
10447 MIR 74 not_TE_peak all_peaks 0.3490566038
10448 DNA? 74 TE_peak all_peaks 1.0000000000
10449 L2 731 TE_peak all_peaks 0.8969325153
10450 Alu 13 not_TE_peak all_peaks 0.0429042904
10451 ERV1 89 TE_peak all_peaks 0.5741935484
10452 Simple_repeat 19 TE_peak all_peaks 1.0000000000
10453 CR1 126 TE_peak all_peaks 1.0000000000
10454 Alu 131 not_TE_peak all_peaks 0.4337748344
10455 ERVL-MaLR 343 TE_peak all_peaks 0.6673151751
10456 ERVL 286 TE_peak all_peaks 0.6729411765
10457 ERVL-MaLR 331 TE_peak all_peaks 1.0000000000
10458 ERV1 46 not_TE_peak all_peaks 0.0907297830
10459 ERVL-MaLR 165 TE_peak all_peaks 1.0000000000
10460 <NA> NA not_TE_peak all_peaks NA
10461 L2 121 TE_peak all_peaks 1.0000000000
10462 L2 5 not_TE_peak all_peaks 0.0416666667
10463 hAT-Ac 171 TE_peak all_peaks 1.0000000000
10464 Simple_repeat 64 TE_peak all_peaks 1.0000000000
10465 MIR 62 not_TE_peak all_peaks 0.4217687075
10466 ERVL-MaLR 326 TE_peak all_peaks 1.0000000000
10467 ERVL-MaLR 141 TE_peak all_peaks 1.0000000000
10468 Alu 32 TE_peak all_peaks 0.7441860465
10469 CR1 143 TE_peak all_peaks 1.0000000000
10470 TcMar-Tigger 133 TE_peak all_peaks 0.5782608696
10471 hAT-Tip100 179 TE_peak all_peaks 1.0000000000
10472 MIR 139 TE_peak all_peaks 1.0000000000
10473 ERVL 157 not_TE_peak all_peaks 0.3895781638
10474 CR1 42 not_TE_peak all_peaks 0.4242424242
10475 CR1 264 TE_peak all_peaks 1.0000000000
10476 L2 225 not_TE_peak all_peaks 0.3510140406
10477 Simple_repeat 69 TE_peak all_peaks 1.0000000000
10478 Low_complexity 44 TE_peak all_peaks 1.0000000000
10479 Alu 262 TE_peak all_peaks 0.8343949045
10480 Simple_repeat 13 TE_peak all_peaks 1.0000000000
10481 L1 272 TE_peak all_peaks 0.5762711864
10482 SVA 838 not_TE_peak all_peaks 0.4532179557
10483 Alu 164 TE_peak all_peaks 0.5597269625
10484 <NA> NA not_TE_peak all_peaks NA
10485 L1 677 not_TE_peak all_peaks 0.1519982039
10486 CR1 74 TE_peak all_peaks 0.8604651163
10487 CR1 129 TE_peak all_peaks 1.0000000000
10488 Simple_repeat 52 TE_peak all_peaks 1.0000000000
10489 CR1 27 TE_peak all_peaks 0.6428571429
10490 L1 83 TE_peak all_peaks 1.0000000000
10491 Alu 68 not_TE_peak all_peaks 0.2361111111
10492 Gypsy 111 TE_peak all_peaks 1.0000000000
10493 Gypsy 376 TE_peak all_peaks 1.0000000000
10494 ERV1 15 not_TE_peak all_peaks 0.0234009360
10495 L2 305 not_TE_peak all_peaks 0.4326241135
10496 <NA> NA not_TE_peak all_peaks NA
10497 hAT-Ac 140 TE_peak all_peaks 1.0000000000
10498 Unknown 56 not_TE_peak all_peaks 0.3660130719
10499 ERVL-MaLR 27 not_TE_peak all_peaks 0.0632318501
10500 hAT-Charlie 143 TE_peak all_peaks 1.0000000000
10501 MIR 135 TE_peak all_peaks 1.0000000000
10502 L2 105 not_TE_peak all_peaks 0.4506437768
10503 <NA> NA not_TE_peak all_peaks NA
10504 <NA> NA not_TE_peak all_peaks NA
10505 ERV1 525 TE_peak all_peaks 0.9722222222
10506 L2 421 TE_peak all_peaks 0.7613019892
10507 <NA> NA not_TE_peak all_peaks NA
10508 CR1 71 TE_peak all_peaks 0.8987341772
10509 MIR 149 TE_peak all_peaks 0.8324022346
10510 hAT-Charlie 97 TE_peak all_peaks 0.7293233083
10511 L2 50 TE_peak all_peaks 1.0000000000
10512 L1 26 not_TE_peak all_peaks 0.1428571429
10513 <NA> NA not_TE_peak all_peaks NA
10514 L2 150 not_TE_peak all_peaks 0.1965923984
10515 Simple_repeat 37 TE_peak all_peaks 1.0000000000
10516 MIR 71 TE_peak all_peaks 1.0000000000
10517 L1 11 not_TE_peak all_peaks 0.0216962525
10518 L2 292 TE_peak all_peaks 1.0000000000
10519 L2 355 TE_peak all_peaks 0.6672932331
10520 <NA> NA not_TE_peak all_peaks NA
10521 TcMar-Tigger 143 TE_peak all_peaks 1.0000000000
10522 Alu 154 TE_peak all_peaks 0.8555555556
10523 MIR 75 TE_peak all_peaks 1.0000000000
10524 L2 31 TE_peak all_peaks 1.0000000000
10525 Simple_repeat 37 TE_peak all_peaks 1.0000000000
10526 MIR 91 not_TE_peak all_peaks 0.4193548387
10527 Alu 91 not_TE_peak all_peaks 0.3013245033
10528 L2 136 TE_peak all_peaks 1.0000000000
10529 CR1 48 TE_peak all_peaks 0.8421052632
10530 L2 365 TE_peak all_peaks 0.8774038462
10531 MIR 48 TE_peak all_peaks 1.0000000000
10532 MIR 61 TE_peak all_peaks 1.0000000000
10533 ERVL-MaLR 457 TE_peak all_peaks 1.0000000000
10534 ERVL-MaLR 135 not_TE_peak all_peaks 0.0991917708
10535 Low_complexity 11 not_TE_peak all_peaks 0.1666666667
10536 Simple_repeat 13 TE_peak all_peaks 0.5652173913
10537 L2 47 TE_peak all_peaks 0.8545454545
10538 Simple_repeat 32 TE_peak all_peaks 1.0000000000
10539 Simple_repeat 48 TE_peak all_peaks 1.0000000000
10540 <NA> NA not_TE_peak all_peaks NA
10541 L2 21 not_TE_peak all_peaks 0.2727272727
10542 Alu 311 TE_peak all_peaks 1.0000000000
10543 L2 59 TE_peak all_peaks 1.0000000000
10544 ERVL 282 not_TE_peak all_peaks 0.4787775891
10545 <NA> NA not_TE_peak all_peaks NA
10546 <NA> NA not_TE_peak all_peaks NA
10547 ERVL 421 not_TE_peak all_peaks 0.3373397436
10548 MIR 196 TE_peak all_peaks 1.0000000000
10549 ERVL-MaLR 393 TE_peak all_peaks 0.8221757322
10550 Unknown 58 not_TE_peak all_peaks 0.4531250000
10551 <NA> NA not_TE_peak all_peaks NA
10552 Simple_repeat 56 TE_peak all_peaks 1.0000000000
10553 <NA> NA not_TE_peak all_peaks NA
10554 L2 197 TE_peak all_peaks 1.0000000000
10555 L2 74 TE_peak all_peaks 1.0000000000
10556 <NA> NA not_TE_peak all_peaks NA
10557 Simple_repeat 27 TE_peak all_peaks 1.0000000000
10558 Simple_repeat 66 TE_peak all_peaks 1.0000000000
10559 Simple_repeat 40 TE_peak all_peaks 1.0000000000
10560 Simple_repeat 36 TE_peak all_peaks 1.0000000000
10561 Simple_repeat 61 TE_peak all_peaks 1.0000000000
10562 Low_complexity 33 TE_peak all_peaks 1.0000000000
10563 <NA> NA not_TE_peak all_peaks NA
10564 Alu 114 not_TE_peak all_peaks 0.4086021505
10565 Simple_repeat 158 TE_peak all_peaks 0.6723404255
10566 L2 250 TE_peak all_peaks 1.0000000000
10567 <NA> NA not_TE_peak all_peaks NA
10568 L2 85 TE_peak all_peaks 1.0000000000
10569 Simple_repeat 40 TE_peak all_peaks 1.0000000000
10570 hAT-Charlie 138 TE_peak all_peaks 0.9078947368
10571 Low_complexity 21 not_TE_peak all_peaks 0.3684210526
10572 MIR 167 TE_peak all_peaks 0.9823529412
10573 ERV1 270 not_TE_peak all_peaks 0.4173106646
10574 MIR 137 TE_peak all_peaks 0.7740112994
10575 <NA> NA not_TE_peak all_peaks NA
10576 L2 447 TE_peak all_peaks 0.5730769231
10577 ERVL 469 TE_peak all_peaks 0.9361277445
10578 hAT-Charlie 124 TE_peak all_peaks 0.7750000000
10579 Alu 247 TE_peak all_peaks 0.9573643411
10580 ERV1 333 not_TE_peak all_peaks 0.2307692308
10581 TcMar-Tigger 345 not_TE_peak all_peaks 0.3188539741
10582 MIR 190 TE_peak all_peaks 1.0000000000
10583 MIR 237 TE_peak all_peaks 1.0000000000
10584 L2 458 TE_peak all_peaks 1.0000000000
10585 L2 106 TE_peak all_peaks 1.0000000000
10586 <NA> NA not_TE_peak all_peaks NA
10587 L1 72 not_TE_peak all_peaks 0.0209363187
10588 L2 182 TE_peak all_peaks 0.5481927711
10589 L1 427 not_TE_peak all_peaks 0.4178082192
10590 L1 467 not_TE_peak all_peaks 0.4755600815
10591 Simple_repeat 32 TE_peak all_peaks 1.0000000000
10592 TcMar-Tigger 285 not_TE_peak all_peaks 0.2722063037
10593 hAT-Charlie 190 TE_peak all_peaks 1.0000000000
10594 MIR 123 TE_peak all_peaks 1.0000000000
10595 Simple_repeat 30 TE_peak all_peaks 1.0000000000
10596 ERV1 442 TE_peak all_peaks 0.9888143177
10597 ERV1 322 TE_peak all_peaks 0.7488372093
10598 CR1 303 TE_peak all_peaks 0.8657142857
10599 MIR 112 TE_peak all_peaks 1.0000000000
10600 Simple_repeat 26 TE_peak all_peaks 1.0000000000
10601 Simple_repeat 50 TE_peak all_peaks 1.0000000000
10602 Simple_repeat 51 TE_peak all_peaks 1.0000000000
10603 Simple_repeat 39 TE_peak all_peaks 1.0000000000
10604 <NA> NA not_TE_peak all_peaks NA
10605 <NA> NA not_TE_peak all_peaks NA
10606 <NA> NA not_TE_peak all_peaks NA
10607 ERV1 287 TE_peak all_peaks 0.7086419753
10608 MIR 145 TE_peak all_peaks 0.7631578947
10609 L2 209 not_TE_peak all_peaks 0.3913857678
10610 CR1 38 not_TE_peak all_peaks 0.2000000000
10611 MIR 139 TE_peak all_peaks 1.0000000000
10612 RTE-X 161 not_TE_peak all_peaks 0.4908536585
10613 ERVL-MaLR 224 not_TE_peak all_peaks 0.2403433476
10614 ERVL-MaLR 364 TE_peak all_peaks 0.8348623853
10615 MIR 63 not_TE_peak all_peaks 0.3281250000
10616 CR1 221 TE_peak all_peaks 1.0000000000
10617 ERVL-MaLR 292 TE_peak all_peaks 0.6636363636
10618 L2 100 TE_peak all_peaks 0.5235602094
10619 MIR 206 TE_peak all_peaks 1.0000000000
10620 MIR 100 TE_peak all_peaks 1.0000000000
10621 <NA> NA not_TE_peak all_peaks NA
10622 MIR 30 not_TE_peak all_peaks 0.2654867257
10623 MIR 51 not_TE_peak all_peaks 0.2383177570
10624 ERVL-MaLR 94 not_TE_peak all_peaks 0.2410256410
10625 <NA> NA not_TE_peak all_peaks NA
10626 <NA> NA not_TE_peak all_peaks NA
10627 <NA> NA not_TE_peak all_peaks NA
10628 L1 505 TE_peak all_peaks 0.8041401274
10629 hAT-Charlie 171 TE_peak all_peaks 0.7600000000
10630 <NA> NA not_TE_peak all_peaks NA
10631 <NA> NA not_TE_peak all_peaks NA
10632 <NA> NA not_TE_peak all_peaks NA
10633 <NA> NA not_TE_peak all_peaks NA
10634 ERVL-MaLR 282 TE_peak all_peaks 0.6453089245
10635 <NA> NA not_TE_peak all_peaks NA
10636 Alu 46 not_TE_peak all_peaks 0.1538461538
10637 RTE-BovB 169 TE_peak all_peaks 1.0000000000
10638 RTE-BovB 177 TE_peak all_peaks 1.0000000000
10639 <NA> NA not_TE_peak all_peaks NA
10640 <NA> NA not_TE_peak all_peaks NA
10641 ERVL? 470 TE_peak all_peaks 0.9552845528
10642 <NA> NA not_TE_peak all_peaks NA
10643 <NA> NA not_TE_peak all_peaks NA
10644 <NA> NA not_TE_peak all_peaks NA
10645 ERV1 178 not_TE_peak all_peaks 0.2807570978
10646 Alu 158 TE_peak all_peaks 0.5337837838
10647 ERV1 442 TE_peak all_peaks 0.9246861925
10648 ERV1 469 TE_peak all_peaks 1.0000000000
10649 Alu 24 not_TE_peak all_peaks 0.1832061069
10650 Alu 68 not_TE_peak all_peaks 0.2214983713
10651 CR1 80 not_TE_peak all_peaks 0.4624277457
10652 ERVL-MaLR 86 not_TE_peak all_peaks 0.4134615385
10653 Gypsy? 82 TE_peak all_peaks 1.0000000000
10654 <NA> NA not_TE_peak all_peaks NA
10655 <NA> NA not_TE_peak all_peaks NA
10656 <NA> NA not_TE_peak all_peaks NA
10657 hAT-Charlie 62 not_TE_peak all_peaks 0.4592592593
10658 ERV1 74 not_TE_peak all_peaks 0.1149068323
10659 ERV1 71 TE_peak all_peaks 0.5725806452
10660 Alu 83 TE_peak all_peaks 1.0000000000
10661 ERV1 95 TE_peak all_peaks 1.0000000000
10662 ERVK 398 TE_peak all_peaks 0.6838487973
10663 L1 46 not_TE_peak all_peaks 0.1446540881
10664 ERVL-MaLR 238 not_TE_peak all_peaks 0.2474012474
10665 Simple_repeat 20 TE_peak all_peaks 1.0000000000
10666 Alu 156 TE_peak all_peaks 0.5131578947
10667 Alu 76 not_TE_peak all_peaks 0.2428115016
10668 MIR 98 TE_peak all_peaks 0.5414364641
10669 hAT-Charlie 11 TE_peak all_peaks 1.0000000000
10670 hAT-Charlie 16 not_TE_peak all_peaks 0.0869565217
10671 ERVL-MaLR 348 TE_peak all_peaks 0.6810176125
10672 L1 64 not_TE_peak all_peaks 0.3121951220
10673 MIR 96 TE_peak all_peaks 1.0000000000
10674 L2 313 TE_peak all_peaks 0.6603375527
10675 Alu 289 TE_peak all_peaks 1.0000000000
10676 Simple_repeat 24 TE_peak all_peaks 1.0000000000
10677 L2 150 TE_peak all_peaks 1.0000000000
10678 <NA> NA not_TE_peak all_peaks NA
10679 MIR 63 TE_peak all_peaks 1.0000000000
10680 CR1 288 TE_peak all_peaks 1.0000000000
10681 Alu 312 TE_peak all_peaks 1.0000000000
10682 Simple_repeat 18 TE_peak all_peaks 1.0000000000
10683 MIR 52 TE_peak all_peaks 1.0000000000
10684 L2 51 not_TE_peak all_peaks 0.4322033898
10685 MIR 102 TE_peak all_peaks 0.6107784431
10686 MIR 155 TE_peak all_peaks 1.0000000000
10687 ERVL 101 TE_peak all_peaks 1.0000000000
10688 Simple_repeat 35 TE_peak all_peaks 1.0000000000
10689 MIR 40 TE_peak all_peaks 0.6557377049
10690 <NA> NA not_TE_peak all_peaks NA
10691 L2 84 not_TE_peak all_peaks 0.2745098039
10692 L2 80 TE_peak all_peaks 1.0000000000
10693 L2 54 TE_peak all_peaks 1.0000000000
10694 <NA> NA not_TE_peak all_peaks NA
10695 Alu 292 TE_peak all_peaks 1.0000000000
10696 L2 449 TE_peak all_peaks 1.0000000000
10697 Alu 65 not_TE_peak all_peaks 0.2090032154
10698 tRNA-RTE 95 TE_peak all_peaks 1.0000000000
10699 Simple_repeat 31 TE_peak all_peaks 1.0000000000
10700 Simple_repeat 30 TE_peak all_peaks 1.0000000000
10701 <NA> NA not_TE_peak all_peaks NA
10702 <NA> NA not_TE_peak all_peaks NA
10703 TcMar-Tigger 162 TE_peak all_peaks 1.0000000000
10704 Low_complexity 51 TE_peak all_peaks 1.0000000000
10705 <NA> NA not_TE_peak all_peaks NA
10706 L2 78 not_TE_peak all_peaks 0.2280701754
10707 MIR 75 not_TE_peak all_peaks 0.4464285714
10708 <NA> NA not_TE_peak all_peaks NA
10709 MIR 7 not_TE_peak all_peaks 0.0518518519
10710 L2 280 TE_peak all_peaks 1.0000000000
10711 L2 15 not_TE_peak all_peaks 0.1470588235
10712 hAT-Charlie 47 not_TE_peak all_peaks 0.4351851852
10713 L2 82 not_TE_peak all_peaks 0.4039408867
10714 Simple_repeat 6 not_TE_peak all_peaks 0.2400000000
10715 MIR 244 TE_peak all_peaks 1.0000000000
10716 MIR 96 TE_peak all_peaks 1.0000000000
10717 <NA> NA not_TE_peak all_peaks NA
10718 <NA> NA not_TE_peak all_peaks NA
10719 Simple_repeat 35 TE_peak all_peaks 1.0000000000
10720 Simple_repeat 53 TE_peak all_peaks 1.0000000000
10721 L2 136 not_TE_peak all_peaks 0.3022222222
10722 ERVL-MaLR 423 TE_peak all_peaks 1.0000000000
10723 L2 535 TE_peak all_peaks 0.9674502712
10724 <NA> NA not_TE_peak all_peaks NA
10725 Simple_repeat 23 TE_peak all_peaks 1.0000000000
10726 <NA> NA not_TE_peak all_peaks NA
10727 MIR 98 TE_peak all_peaks 0.6242038217
10728 <NA> NA not_TE_peak all_peaks NA
10729 Simple_repeat 17 TE_peak all_peaks 1.0000000000
10730 MIR 118 TE_peak all_peaks 0.8082191781
10731 <NA> NA not_TE_peak all_peaks NA
10732 ERV1 484 TE_peak all_peaks 0.7245508982
10733 L2 206 TE_peak all_peaks 0.6983050847
10734 <NA> NA not_TE_peak all_peaks NA
10735 ERVL 611 TE_peak all_peaks 0.7656641604
10736 ERVL-MaLR 274 TE_peak all_peaks 0.7675070028
10737 <NA> NA not_TE_peak all_peaks NA
10738 Alu 156 TE_peak all_peaks 1.0000000000
10739 Simple_repeat 24 TE_peak all_peaks 1.0000000000
10740 L2 328 not_TE_peak all_peaks 0.4992389650
10741 L1 295 not_TE_peak all_peaks 0.0543078056
10742 ERVL-MaLR 393 TE_peak all_peaks 0.7132486388
10743 L2 1 not_TE_peak all_peaks 0.0047619048
10744 <NA> NA not_TE_peak all_peaks NA
10745 ERVL-MaLR 344 TE_peak all_peaks 1.0000000000
10746 MIR 54 not_TE_peak all_peaks 0.3417721519
10747 MIR 135 TE_peak all_peaks 1.0000000000
10748 TcMar-Tigger 75 TE_peak all_peaks 1.0000000000
10749 L2 22 not_TE_peak all_peaks 0.2037037037
10750 <NA> NA not_TE_peak all_peaks NA
10751 L2 131 not_TE_peak all_peaks 0.1742021277
10752 TcMar-Tigger 209 TE_peak all_peaks 1.0000000000
10753 ERVL-MaLR 93 not_TE_peak all_peaks 0.2421875000
10754 L2 582 TE_peak all_peaks 0.9341894061
10755 <NA> NA not_TE_peak all_peaks NA
10756 <NA> NA not_TE_peak all_peaks NA
10757 <NA> NA not_TE_peak all_peaks NA
10758 hAT-Charlie 1 not_TE_peak all_peaks 0.0054347826
10759 L2 426 TE_peak all_peaks 1.0000000000
10760 L2 112 TE_peak all_peaks 1.0000000000
10761 Simple_repeat 28 TE_peak all_peaks 1.0000000000
10762 Simple_repeat 46 TE_peak all_peaks 1.0000000000
10763 L2 57 TE_peak all_peaks 1.0000000000
10764 MIR 124 TE_peak all_peaks 1.0000000000
10765 MIR 58 TE_peak all_peaks 0.6744186047
10766 tRNA 56 TE_peak all_peaks 1.0000000000
10767 <NA> NA not_TE_peak all_peaks NA
10768 hAT-Charlie 4 not_TE_peak all_peaks 0.0909090909
10769 MIR 113 TE_peak all_peaks 1.0000000000
10770 MIR 77 TE_peak all_peaks 0.5923076923
10771 L2 200 TE_peak all_peaks 1.0000000000
10772 L2 212 TE_peak all_peaks 0.7737226277
10773 ERVL-MaLR 346 TE_peak all_peaks 0.7637969095
10774 ERVL-MaLR 444 TE_peak all_peaks 1.0000000000
10775 <NA> NA not_TE_peak all_peaks NA
10776 L2 78 TE_peak all_peaks 1.0000000000
10777 <NA> NA not_TE_peak all_peaks NA
10778 L2 63 TE_peak all_peaks 0.7777777778
10779 L2 65 TE_peak all_peaks 1.0000000000
10780 L2 63 TE_peak all_peaks 1.0000000000
10781 RTE-BovB 133 TE_peak all_peaks 1.0000000000
10782 MIR 15 not_TE_peak all_peaks 0.1000000000
10783 L2 268 TE_peak all_peaks 1.0000000000
10784 ERVL-MaLR 158 TE_peak all_peaks 1.0000000000
10785 Simple_repeat 101 TE_peak all_peaks 1.0000000000
10786 Simple_repeat 21 TE_peak all_peaks 0.8750000000
10787 Simple_repeat 19 TE_peak all_peaks 1.0000000000
10788 Simple_repeat 26 TE_peak all_peaks 1.0000000000
10789 <NA> NA not_TE_peak all_peaks NA
10790 Alu 239 TE_peak all_peaks 0.7492163009
10791 MIR 104 TE_peak all_peaks 0.9285714286
10792 MIR 70 TE_peak all_peaks 1.0000000000
10793 Alu 52 not_TE_peak all_peaks 0.1739130435
10794 MIR 10 not_TE_peak all_peaks 0.0485436893
10795 Alu 31 not_TE_peak all_peaks 0.2627118644
10796 <NA> NA not_TE_peak all_peaks NA
10797 <NA> NA not_TE_peak all_peaks NA
10798 <NA> NA not_TE_peak all_peaks NA
10799 Alu 39 not_TE_peak all_peaks 0.2600000000
10800 hAT-Charlie 106 TE_peak all_peaks 1.0000000000
10801 TcMar-Mariner 162 TE_peak all_peaks 1.0000000000
10802 L2 50 not_TE_peak all_peaks 0.1461988304
10803 MIR 43 not_TE_peak all_peaks 0.1829787234
10804 MIR 126 TE_peak all_peaks 1.0000000000
10805 DNA? 156 TE_peak all_peaks 1.0000000000
10806 ERV1 113 not_TE_peak all_peaks 0.2568181818
10807 <NA> NA not_TE_peak all_peaks NA
10808 ERVL-MaLR 10 not_TE_peak all_peaks 0.0253164557
10809 <NA> NA not_TE_peak all_peaks NA
10810 <NA> NA not_TE_peak all_peaks NA
10811 <NA> NA not_TE_peak all_peaks NA
10812 hAT-Charlie 7 not_TE_peak all_peaks 0.0393258427
10813 hAT-Charlie 191 TE_peak all_peaks 1.0000000000
10814 hAT-Charlie 157 TE_peak all_peaks 1.0000000000
10815 MIR 154 TE_peak all_peaks 1.0000000000
10816 ERVL-MaLR 65 TE_peak all_peaks 0.5416666667
10817 <NA> NA not_TE_peak all_peaks NA
10818 ERVL 316 TE_peak all_peaks 0.6825053996
10819 MULE-MuDR 60 TE_peak all_peaks 1.0000000000
10820 CR1 134 TE_peak all_peaks 1.0000000000
10821 <NA> NA not_TE_peak all_peaks NA
10822 ERVL 23 not_TE_peak all_peaks 0.0501089325
10823 ERV1 530 TE_peak all_peaks 1.0000000000
10824 ERVL-MaLR 497 TE_peak all_peaks 0.9650485437
10825 L1 532 not_TE_peak all_peaks 0.1322725012
10826 ERVL-MaLR 273 TE_peak all_peaks 1.0000000000
10827 ERVL 211 not_TE_peak all_peaks 0.2357541899
10828 ERVL 361 TE_peak all_peaks 0.7037037037
10829 <NA> NA not_TE_peak all_peaks NA
10830 L2 60 not_TE_peak all_peaks 0.4255319149
10831 L2 377 TE_peak all_peaks 0.9716494845
10832 L1 225 not_TE_peak all_peaks 0.0613747954
10833 hAT-Blackjack 50 not_TE_peak all_peaks 0.3937007874
10834 <NA> NA not_TE_peak all_peaks NA
10835 L2 62 not_TE_peak all_peaks 0.3387978142
10836 <NA> NA not_TE_peak all_peaks NA
10837 L2 292 TE_peak all_peaks 1.0000000000
10838 <NA> NA not_TE_peak all_peaks NA
10839 Simple_repeat 60 TE_peak all_peaks 1.0000000000
10840 ERV1 269 TE_peak all_peaks 1.0000000000
10841 ERV1 325 TE_peak all_peaks 0.6397637795
10842 L1 736 not_TE_peak all_peaks 0.4355029586
10843 Low_complexity 38 TE_peak all_peaks 1.0000000000
10844 Alu 97 not_TE_peak all_peaks 0.3321917808
10845 L1 900 TE_peak all_peaks 0.5917159763
10846 Simple_repeat 35 TE_peak all_peaks 1.0000000000
10847 <NA> NA not_TE_peak all_peaks NA
10848 ERV1 460 TE_peak all_peaks 0.5852417303
10849 <NA> NA not_TE_peak all_peaks NA
10850 ERVL-MaLR 193 not_TE_peak all_peaks 0.3222036728
10851 ERVL-MaLR 9 not_TE_peak all_peaks 0.0319148936
10852 L1 288 not_TE_peak all_peaks 0.2920892495
10853 Low_complexity 29 TE_peak all_peaks 1.0000000000
10854 hAT-Charlie 190 TE_peak all_peaks 1.0000000000
10855 MIR 39 TE_peak all_peaks 1.0000000000
10856 MIR 142 TE_peak all_peaks 0.7029702970
10857 CR1 4 not_TE_peak all_peaks 0.0089887640
10858 ERVL-MaLR 253 TE_peak all_peaks 0.8518518519
10859 ERVL 124 TE_peak all_peaks 1.0000000000
10860 ERVL 219 TE_peak all_peaks 1.0000000000
10861 MIR 30 not_TE_peak all_peaks 0.2205882353
10862 MIR 172 TE_peak all_peaks 1.0000000000
10863 MIR 98 TE_peak all_peaks 0.5975609756
10864 L2 584 TE_peak all_peaks 0.6927639383
10865 L2 240 TE_peak all_peaks 1.0000000000
10866 TcMar-Tigger 728 not_TE_peak all_peaks 0.2972641895
10867 L2 36 not_TE_peak all_peaks 0.1690140845
10868 <NA> NA not_TE_peak all_peaks NA
10869 Simple_repeat 46 TE_peak all_peaks 1.0000000000
10870 Simple_repeat 44 TE_peak all_peaks 1.0000000000
10871 ERVL-MaLR 252 TE_peak all_peaks 0.6737967914
10872 <NA> NA not_TE_peak all_peaks NA
10873 L2 40 not_TE_peak all_peaks 0.3603603604
10874 ERVL 124 TE_peak all_peaks 1.0000000000
10875 ERVL 197 TE_peak all_peaks 0.6293929712
10876 ERVL 86 not_TE_peak all_peaks 0.2422535211
10877 ERVL 277 TE_peak all_peaks 0.9111842105
10878 <NA> NA not_TE_peak all_peaks NA
10879 hAT-Charlie 173 not_TE_peak all_peaks 0.4914772727
10880 <NA> NA not_TE_peak all_peaks NA
10881 ERVL 365 TE_peak all_peaks 0.8075221239
10882 L1 410 not_TE_peak all_peaks 0.2087576375
10883 ERVK 387 not_TE_peak all_peaks 0.3973305955
10884 L1 311 TE_peak all_peaks 1.0000000000
10885 Alu 95 not_TE_peak all_peaks 0.2722063037
10886 RTE-BovB 30 not_TE_peak all_peaks 0.1886792453
10887 MIR 106 TE_peak all_peaks 1.0000000000
10888 ERVL 373 TE_peak all_peaks 0.9301745636
10889 L1 131 not_TE_peak all_peaks 0.3875739645
10890 Alu 272 TE_peak all_peaks 0.8119402985
10891 <NA> NA not_TE_peak all_peaks NA
10892 ERVL-MaLR 75 TE_peak all_peaks 1.0000000000
10893 Simple_repeat 17 not_TE_peak all_peaks 0.2207792208
10894 ERVL 213 TE_peak all_peaks 1.0000000000
10895 ERVL 257 not_TE_peak all_peaks 0.3818722140
10896 <NA> NA not_TE_peak all_peaks NA
10897 TcMar-Tigger 277 TE_peak all_peaks 0.5782881002
10898 L1 1 not_TE_peak all_peaks 0.0035842294
10899 Alu 183 TE_peak all_peaks 1.0000000000
10900 L1 30 not_TE_peak all_peaks 0.2097902098
10901 <NA> NA not_TE_peak all_peaks NA
10902 ERVL-MaLR 433 TE_peak all_peaks 1.0000000000
10903 <NA> NA not_TE_peak all_peaks NA
10904 ERVL 95 not_TE_peak all_peaks 0.3442028986
10905 Simple_repeat 25 TE_peak all_peaks 1.0000000000
10906 L1 237 TE_peak all_peaks 0.7596153846
10907 L1 509 not_TE_peak all_peaks 0.2981839484
10908 L1 415 not_TE_peak all_peaks 0.0657477820
10909 <NA> NA not_TE_peak all_peaks NA
10910 L2 131 TE_peak all_peaks 1.0000000000
10911 Alu 94 not_TE_peak all_peaks 0.3133333333
10912 ERVL-MaLR 127 not_TE_peak all_peaks 0.2822222222
10913 ERV1 192 not_TE_peak all_peaks 0.3855421687
10914 <NA> NA not_TE_peak all_peaks NA
10915 L1 713 not_TE_peak all_peaks 0.3138204225
10916 <NA> NA not_TE_peak all_peaks NA
10917 MIR 185 TE_peak all_peaks 0.7400000000
10918 ERVL 202 TE_peak all_peaks 0.6894197952
10919 ERVL 137 TE_peak all_peaks 0.5372549020
10920 ERVK 50 TE_peak all_peaks 1.0000000000
10921 L1 362 TE_peak all_peaks 0.9050000000
10922 ERVL-MaLR 606 not_TE_peak all_peaks 0.4594389689
10923 <NA> NA not_TE_peak all_peaks NA
10924 <NA> NA not_TE_peak all_peaks NA
10925 <NA> NA not_TE_peak all_peaks NA
10926 ERVL 427 TE_peak all_peaks 0.8275193798
10927 L1 195 not_TE_peak all_peaks 0.4862842893
10928 <NA> NA not_TE_peak all_peaks NA
10929 <NA> NA not_TE_peak all_peaks NA
10930 L1 71 not_TE_peak all_peaks 0.4965034965
10931 Alu 204 TE_peak all_peaks 0.7391304348
10932 L1 328 TE_peak all_peaks 0.7681498829
10933 ERVL 322 TE_peak all_peaks 0.5780969479
10934 5S-Deu-L2 124 TE_peak all_peaks 1.0000000000
10935 <NA> NA not_TE_peak all_peaks NA
10936 <NA> NA not_TE_peak all_peaks NA
10937 ERV1 396 TE_peak all_peaks 0.5649072753
10938 L1 344 not_TE_peak all_peaks 0.4415917843
10939 <NA> NA not_TE_peak all_peaks NA
10940 <NA> NA not_TE_peak all_peaks NA
10941 <NA> NA not_TE_peak all_peaks NA
10942 ERVL-MaLR 459 not_TE_peak all_peaks 0.3367571533
10943 <NA> NA not_TE_peak all_peaks NA
10944 L1 148 not_TE_peak all_peaks 0.3727959698
10945 ERVL-MaLR 337 TE_peak all_peaks 0.7294372294
10946 L1 717 not_TE_peak all_peaks 0.2749233129
10947 <NA> NA not_TE_peak all_peaks NA
10948 hAT-Tip100 41 not_TE_peak all_peaks 0.1576923077
10949 hAT-Charlie 2 not_TE_peak all_peaks 0.0155038760
10950 <NA> NA not_TE_peak all_peaks NA
10951 Simple_repeat 44 TE_peak all_peaks 1.0000000000
10952 ERVL 258 TE_peak all_peaks 0.6246973366
10953 ERVL 432 TE_peak all_peaks 1.0000000000
10954 Simple_repeat 27 TE_peak all_peaks 1.0000000000
10955 Simple_repeat 49 TE_peak all_peaks 1.0000000000
10956 <NA> NA not_TE_peak all_peaks NA
10957 Simple_repeat 49 TE_peak all_peaks 1.0000000000
10958 Low_complexity 39 TE_peak all_peaks 1.0000000000
10959 Simple_repeat 26 TE_peak all_peaks 0.7428571429
10960 Simple_repeat 34 TE_peak all_peaks 1.0000000000
10961 Simple_repeat 5 not_TE_peak all_peaks 0.1282051282
10962 ERVL 271 TE_peak all_peaks 0.6049107143
10963 <NA> NA not_TE_peak all_peaks NA
10964 <NA> NA not_TE_peak all_peaks NA
10965 <NA> NA not_TE_peak all_peaks NA
10966 MIR 203 TE_peak all_peaks 1.0000000000
10967 MIR 11 not_TE_peak all_peaks 0.1375000000
10968 <NA> NA not_TE_peak all_peaks NA
10969 Simple_repeat 42 TE_peak all_peaks 1.0000000000
10970 MIR 128 TE_peak all_peaks 0.6918918919
10971 L2 137 TE_peak all_peaks 1.0000000000
10972 MIR 19 not_TE_peak all_peaks 0.1180124224
10973 MIR 104 TE_peak all_peaks 0.8888888889
10974 <NA> NA not_TE_peak all_peaks NA
10975 L2 183 not_TE_peak all_peaks 0.4893048128
10976 ERVL-MaLR 271 TE_peak all_peaks 0.9890510949
10977 ERVL-MaLR 50 not_TE_peak all_peaks 0.3144654088
10978 <NA> NA not_TE_peak all_peaks NA
10979 CR1 50 TE_peak all_peaks 1.0000000000
10980 TcMar-Mariner 60 not_TE_peak all_peaks 0.4958677686
10981 <NA> NA not_TE_peak all_peaks NA
10982 <NA> NA not_TE_peak all_peaks NA
10983 Simple_repeat 59 TE_peak all_peaks 1.0000000000
10984 <NA> NA not_TE_peak all_peaks NA
10985 <NA> NA not_TE_peak all_peaks NA
10986 Simple_repeat 23 TE_peak all_peaks 1.0000000000
10987 L1 80 not_TE_peak all_peaks 0.3827751196
10988 ERVL-MaLR 141 TE_peak all_peaks 1.0000000000
10989 Alu 66 not_TE_peak all_peaks 0.2095238095
10990 L2 107 not_TE_peak all_peaks 0.4841628959
10991 <NA> NA not_TE_peak all_peaks NA
10992 <NA> NA not_TE_peak all_peaks NA
10993 ERVL-MaLR 269 TE_peak all_peaks 0.5977777778
10994 ERVL 146 TE_peak all_peaks 0.5195729537
10995 ERVL 177 TE_peak all_peaks 1.0000000000
10996 L1 336 TE_peak all_peaks 1.0000000000
10997 Alu 51 not_TE_peak all_peaks 0.1629392971
10998 L1 156 TE_peak all_peaks 0.7090909091
10999 ERV1 514 TE_peak all_peaks 1.0000000000
11000 <NA> NA not_TE_peak all_peaks NA
11001 L2 56 not_TE_peak all_peaks 0.4628099174
11002 L2 99 TE_peak all_peaks 1.0000000000
11003 <NA> NA not_TE_peak all_peaks NA
11004 MIR 78 TE_peak all_peaks 1.0000000000
11005 L2 80 not_TE_peak all_peaks 0.1635991820
11006 Alu 256 TE_peak all_peaks 0.8338762215
11007 Low_complexity 53 TE_peak all_peaks 1.0000000000
11008 Alu 96 not_TE_peak all_peaks 0.3178807947
11009 L2 381 not_TE_peak all_peaks 0.2988235294
11010 Simple_repeat 42 TE_peak all_peaks 1.0000000000
11011 L2 81 not_TE_peak all_peaks 0.3785046729
11012 Simple_repeat 40 TE_peak all_peaks 1.0000000000
11013 L2 156 not_TE_peak all_peaks 0.1228346457
11014 L2 337 not_TE_peak all_peaks 0.2653543307
11015 <NA> NA not_TE_peak all_peaks NA
11016 <NA> NA not_TE_peak all_peaks NA
11017 L1 21 not_TE_peak all_peaks 0.0598290598
11018 L2 345 TE_peak all_peaks 1.0000000000
11019 ERVL-MaLR 136 not_TE_peak all_peaks 0.3655913978
11020 Alu 50 not_TE_peak all_peaks 0.1724137931
11021 ERVL-MaLR 93 TE_peak all_peaks 1.0000000000
11022 L1 418 not_TE_peak all_peaks 0.3793103448
11023 L1 259 TE_peak all_peaks 0.7400000000
11024 L2 440 TE_peak all_peaks 1.0000000000
11025 <NA> NA not_TE_peak all_peaks NA
11026 Alu 59 not_TE_peak all_peaks 0.1903225806
11027 Simple_repeat 45 TE_peak all_peaks 1.0000000000
11028 L1 635 not_TE_peak all_peaks 0.1518412243
11029 Alu 41 not_TE_peak all_peaks 0.1423611111
11030 L1 48 TE_peak all_peaks 1.0000000000
11031 ERV1 383 TE_peak all_peaks 0.7864476386
11032 MIR 96 TE_peak all_peaks 0.8135593220
11033 Simple_repeat 35 TE_peak all_peaks 1.0000000000
11034 Simple_repeat 65 TE_peak all_peaks 1.0000000000
11035 hAT-Tip100? 121 TE_peak all_peaks 1.0000000000
11036 ERVL 117 not_TE_peak all_peaks 0.2096774194
11037 L2 112 not_TE_peak all_peaks 0.1557719054
11038 ERVL 49 TE_peak all_peaks 1.0000000000
11039 hAT-Tip100 68 TE_peak all_peaks 1.0000000000
11040 ERVL 54 not_TE_peak all_peaks 0.2812500000
11041 <NA> NA not_TE_peak all_peaks NA
11042 L2 119 TE_peak all_peaks 1.0000000000
11043 Simple_repeat 32 TE_peak all_peaks 1.0000000000
11044 ERVL 72 TE_peak all_peaks 1.0000000000
11045 Simple_repeat 51 TE_peak all_peaks 1.0000000000
11046 L2 88 TE_peak all_peaks 1.0000000000
11047 Alu 216 TE_peak all_peaks 0.7248322148
11048 <NA> NA not_TE_peak all_peaks NA
11049 <NA> NA not_TE_peak all_peaks NA
11050 Alu 41 not_TE_peak all_peaks 0.3534482759
11051 Simple_repeat 33 TE_peak all_peaks 1.0000000000
11052 Low_complexity 34 TE_peak all_peaks 1.0000000000
11053 <NA> NA not_TE_peak all_peaks NA
11054 Alu 31 not_TE_peak all_peaks 0.0993589744
11055 <NA> NA not_TE_peak all_peaks NA
11056 L1 454 TE_peak all_peaks 0.5710691824
11057 Alu 195 TE_peak all_peaks 0.8125000000
11058 Alu 143 not_TE_peak all_peaks 0.4782608696
11059 Simple_repeat 32 TE_peak all_peaks 1.0000000000
11060 hAT-Charlie 133 TE_peak all_peaks 1.0000000000
11061 Alu 47 not_TE_peak all_peaks 0.1577181208
11062 Alu 164 TE_peak all_peaks 1.0000000000
11063 Alu 30 not_TE_peak all_peaks 0.1000000000
11064 Alu 252 TE_peak all_peaks 1.0000000000
11065 Simple_repeat 18 TE_peak all_peaks 1.0000000000
11066 Alu 113 TE_peak all_peaks 1.0000000000
11067 MIR 121 TE_peak all_peaks 1.0000000000
11068 Alu 15 not_TE_peak all_peaks 0.0500000000
11069 Low_complexity 52 TE_peak all_peaks 1.0000000000
11070 Simple_repeat 120 TE_peak all_peaks 1.0000000000
11071 Alu 45 not_TE_peak all_peaks 0.2556818182
11072 L2 5 not_TE_peak all_peaks 0.0471698113
11073 Alu 254 TE_peak all_peaks 0.8728522337
11074 <NA> NA not_TE_peak all_peaks NA
11075 <NA> NA not_TE_peak all_peaks NA
11076 Alu 142 not_TE_peak all_peaks 0.4797297297
11077 Alu 148 TE_peak all_peaks 1.0000000000
11078 Alu 313 TE_peak all_peaks 1.0000000000
11079 Alu 166 TE_peak all_peaks 1.0000000000
11080 Alu 116 not_TE_peak all_peaks 0.3866666667
11081 <NA> NA not_TE_peak all_peaks NA
11082 Alu 59 not_TE_peak all_peaks 0.2070175439
11083 Simple_repeat 55 TE_peak all_peaks 1.0000000000
11084 Simple_repeat 23 TE_peak all_peaks 1.0000000000
11085 MIR 24 not_TE_peak all_peaks 0.1846153846
11086 hAT-Charlie 54 TE_peak all_peaks 0.7105263158
11087 Simple_repeat 28 TE_peak all_peaks 1.0000000000
11088 <NA> NA not_TE_peak all_peaks NA
11089 L2 29 TE_peak all_peaks 0.5087719298
11090 L2 122 not_TE_peak all_peaks 0.4728682171
11091 Alu 76 not_TE_peak all_peaks 0.2602739726
11092 Simple_repeat 32 TE_peak all_peaks 1.0000000000
11093 <NA> NA not_TE_peak all_peaks NA
11094 TcMar-Tigger 123 not_TE_peak all_peaks 0.4641509434
11095 TcMar-Tigger 59 TE_peak all_peaks 1.0000000000
11096 Simple_repeat 32 TE_peak all_peaks 1.0000000000
11097 <NA> NA not_TE_peak all_peaks NA
11098 <NA> NA not_TE_peak all_peaks NA
11099 Alu 95 not_TE_peak all_peaks 0.3356890459
11100 <NA> NA not_TE_peak all_peaks NA
11101 Simple_repeat 47 TE_peak all_peaks 1.0000000000
11102 <NA> NA not_TE_peak all_peaks NA
11103 MIR 69 not_TE_peak all_peaks 0.3094170404
11104 <NA> NA not_TE_peak all_peaks NA
11105 Simple_repeat 30 TE_peak all_peaks 1.0000000000
11106 MIR 27 not_TE_peak all_peaks 0.1656441718
11107 <NA> NA not_TE_peak all_peaks NA
11108 ERVL-MaLR 302 TE_peak all_peaks 0.6926605505
11109 Alu 58 not_TE_peak all_peaks 0.1853035144
11110 <NA> NA not_TE_peak all_peaks NA
11111 <NA> NA not_TE_peak all_peaks NA
[ reached 'max' / getOption("max.print") -- omitted 211273 rows ]### makeing of nine set
Nine_te_df <- Eight_group_TE %>%
mutate(mrc=if_else(Peakid %in% ESR_C$Peakid,"ESR_opcl", if_else(Peakid %in% ESR_D$Peakid,"ESR_clop",mrc)))
TE_mat<- Nine_te_df %>%
dplyr::filter(mrc != "not_mrc") %>%
group_by(TEstatus, mrc) %>%
tally %>%
mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>%
pivot_wider(id_cols = mrc, names_from = TEstatus,values_from = n) %>%
column_to_rownames("mrc") %>%
as.matrix(.)### makeing of nine set
Nine_class_status_df <-
Class_status_df %>%
mutate(mrc=if_else(Peakid %in% ESR_C$Peakid,"ESR_opcl", if_else(Peakid %in% ESR_D$Peakid,"ESR_clop",mrc)))
Sine_mat<- Nine_class_status_df %>%
dplyr::filter(mrc != "not_mrc") %>%
group_by(Sine_status, mrc) %>%
tally %>%
mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>%
pivot_wider(id_cols = mrc, names_from = Sine_status,values_from = n) %>%
column_to_rownames("mrc") %>%
na.omit(.) %>%
as.matrix(.)
Line_mat<- Nine_class_status_df %>%
dplyr::filter(mrc != "not_mrc") %>%
group_by(Line_status, mrc) %>%
tally %>%
mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>%
pivot_wider(id_cols = mrc, names_from = Line_status,values_from = n) %>%
column_to_rownames("mrc") %>%
na.omit(.) %>%
as.matrix(.)
LTR_mat<- Nine_class_status_df %>%
dplyr::filter(mrc != "not_mrc") %>%
group_by(LTR_status, mrc) %>%
tally %>%
mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>%
pivot_wider(id_cols = mrc, names_from = LTR_status,values_from = n) %>%
column_to_rownames("mrc") %>%
na.omit(.) %>%
as.matrix(.)
Retro_mat<- Nine_class_status_df %>%
dplyr::filter(mrc != "not_mrc") %>%
group_by(Retro_status, mrc) %>%
tally %>%
mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>%
pivot_wider(id_cols = mrc, names_from = Retro_status,values_from = n) %>%
column_to_rownames("mrc") %>%
na.omit(.) %>%
as.matrix(.)
DNA_mat<- Nine_class_status_df %>%
dplyr::filter(mrc != "not_mrc") %>%
group_by(DNA_status, mrc) %>%
tally %>%
mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>%
pivot_wider(id_cols = mrc, names_from = DNA_status,values_from = n) %>%
column_to_rownames("mrc") %>%
na.omit(.) %>%
as.matrix(.)
CUG_mat <- CUG_mrc_nine_list %>%
distinct(Peakid,.keep_all = TRUE) %>%
dplyr::filter(mrc != "not_mrc") %>%
mutate(mrc=if_else(Peakid %in% ESR_C$Peakid,"ESR_opcl", if_else(Peakid %in% ESR_D$Peakid,"ESR_clop",mrc))) %>%
mutate(mrc= factor(mrc, levels = c("EAR_open","EAR_close","ESR_open", "ESR_close", "ESR_opcl", "ESR_clop","LR_open","LR_close","NR"))) %>%
group_by(cugstatus, mrc) %>%
tally %>%
pivot_wider(id_cols = mrc, names_from = cugstatus,values_from = n) %>%
column_to_rownames("mrc") %>%
na.omit() %>%
as.matrix(.)
TSS_mat <-
Col_TSS_data_gr %>%
as.data.frame() %>%
dplyr::select(Peakid,dist_to_NG) %>%
mutate(TSS_status= if_else(dist_to_NG <100& dist_to_NG>-100,"TSS_peak","not_TSS_peak")) %>%
mutate(mrc=if_else(Peakid %in% EAR_open$Peakid, "EAR_open",
if_else(Peakid %in% EAR_close$Peakid, "EAR_close",
if_else(Peakid %in% ESR_open$Peakid,"ESR_open",
if_else(Peakid %in% ESR_close$Peakid,"ESR_close",
if_else(Peakid %in% ESR_C$Peakid,"ESR_opcl",
if_else(Peakid %in% LR_open$Peakid,"LR_open",
if_else(Peakid %in% LR_close$Peakid,"LR_close",
if_else(Peakid %in% NR_df$Peakid,"NR",if_else(Peakid %in% ESR_D,"ESR_clop","not_mrc"))))))))) ) %>%
group_by(TSS_status, mrc) %>%
dplyr::filter(mrc !="not_mrc") %>%
tally %>%
pivot_wider(id_cols = mrc, names_from = TSS_status,values_from = n) %>%
column_to_rownames("mrc") %>%
na.omit(.) %>%
as.matrix(.)matrix_list <- list("TE"=TE_mat, "Sines"=Sine_mat, "Lines"=Line_mat,"DNA"= DNA_mat,"Retro"= Retro_mat,"LTR"= LTR_mat,"CGI"=CUG_mat,"TSS"=TSS_mat)
results <- data.frame(Matrix_Name = character(),
Row_Compared = character(),
Chi_Square_Statistic = numeric(),
P_Value = numeric(),
stringsAsFactors = FALSE)
names_list <- names(matrix_list)
# Loop through each matrix in the list
for (matrix_name in names_list) {
current_matrix <- matrix_list[[matrix_name]]
n_rows <- nrow(current_matrix)
# Print matrix details for debugging
cat("Processing Matrix:", matrix_name, "\n")
print(current_matrix)
# Loop through each row of the current matrix (except the last row)
for (i in 1:(n_rows - 1)) {
# Print row details for debugging
cat("Comparing row", i, "with last row:\n")
print(current_matrix[i, ])
print(current_matrix[n_rows, ])
# Perform chi-square test between row i and the last row
test_result <- tryCatch({
chisq.test(rbind(current_matrix[i, ], current_matrix[n_rows, ]))
}, error = function(e) {
cat("Error in chi-square test:", e$message, "\n")
return(NULL)
})
# Only store the result if test_result is valid (i.e., not NULL)
if (!is.null(test_result)) {
results <- rbind(results, data.frame(Matrix_Name = matrix_name,
Row_Compared = rownames(current_matrix)[i],
Chi_Square_Statistic = test_result$statistic,
P_Value = test_result$p.value))
}
}
}Processing Matrix: TE
TE_peak not_TE_peak
EAR_close 2908 3020
EAR_open 2795 2045
ESR_clop 781 753
ESR_close 6149 6618
ESR_opcl 76 62
ESR_open 4490 3355
LR_close 10077 9687
LR_open 23813 18964
NR 69182 57609
Comparing row 1 with last row:
TE_peak not_TE_peak
2908 3020
TE_peak not_TE_peak
69182 57609
Comparing row 2 with last row:
TE_peak not_TE_peak
2795 2045
TE_peak not_TE_peak
69182 57609
Comparing row 3 with last row:
TE_peak not_TE_peak
781 753
TE_peak not_TE_peak
69182 57609
Comparing row 4 with last row:
TE_peak not_TE_peak
6149 6618
TE_peak not_TE_peak
69182 57609
Comparing row 5 with last row:
TE_peak not_TE_peak
76 62
TE_peak not_TE_peak
69182 57609
Comparing row 6 with last row:
TE_peak not_TE_peak
4490 3355
TE_peak not_TE_peak
69182 57609
Comparing row 7 with last row:
TE_peak not_TE_peak
10077 9687
TE_peak not_TE_peak
69182 57609
Comparing row 8 with last row:
TE_peak not_TE_peak
23813 18964
TE_peak not_TE_peak
69182 57609
Processing Matrix: Sines
sine_peak not_sine
EAR_close 1545 4383
EAR_open 1003 3837
ESR_clop 458 1076
ESR_close 3010 9757
ESR_opcl 30 108
ESR_open 1753 6092
LR_close 4367 15397
LR_open 10996 31781
NR 28532 98259
Comparing row 1 with last row:
sine_peak not_sine
1545 4383
sine_peak not_sine
28532 98259
Comparing row 2 with last row:
sine_peak not_sine
1003 3837
sine_peak not_sine
28532 98259
Comparing row 3 with last row:
sine_peak not_sine
458 1076
sine_peak not_sine
28532 98259
Comparing row 4 with last row:
sine_peak not_sine
3010 9757
sine_peak not_sine
28532 98259
Comparing row 5 with last row:
sine_peak not_sine
30 108
sine_peak not_sine
28532 98259
Comparing row 6 with last row:
sine_peak not_sine
1753 6092
sine_peak not_sine
28532 98259
Comparing row 7 with last row:
sine_peak not_sine
4367 15397
sine_peak not_sine
28532 98259
Comparing row 8 with last row:
sine_peak not_sine
10996 31781
sine_peak not_sine
28532 98259
Processing Matrix: Lines
line_peak not_line
EAR_close 1100 4828
EAR_open 739 4101
ESR_clop 290 1244
ESR_close 2233 10534
ESR_opcl 34 104
ESR_open 1403 6442
LR_close 3777 15987
LR_open 8569 34208
NR 21423 105368
Comparing row 1 with last row:
line_peak not_line
1100 4828
line_peak not_line
21423 105368
Comparing row 2 with last row:
line_peak not_line
739 4101
line_peak not_line
21423 105368
Comparing row 3 with last row:
line_peak not_line
290 1244
line_peak not_line
21423 105368
Comparing row 4 with last row:
line_peak not_line
2233 10534
line_peak not_line
21423 105368
Comparing row 5 with last row:
line_peak not_line
34 104
line_peak not_line
21423 105368
Comparing row 6 with last row:
line_peak not_line
1403 6442
line_peak not_line
21423 105368
Comparing row 7 with last row:
line_peak not_line
3777 15987
line_peak not_line
21423 105368
Comparing row 8 with last row:
line_peak not_line
8569 34208
line_peak not_line
21423 105368
Processing Matrix: DNA
DNA_peak not_DNA
EAR_close 408 5520
EAR_open 301 4539
ESR_clop 128 1406
ESR_close 854 11913
ESR_opcl 8 130
ESR_open 546 7299
LR_close 1522 18242
LR_open 3809 38968
NR 9040 117751
Comparing row 1 with last row:
DNA_peak not_DNA
408 5520
DNA_peak not_DNA
9040 117751
Comparing row 2 with last row:
DNA_peak not_DNA
301 4539
DNA_peak not_DNA
9040 117751
Comparing row 3 with last row:
DNA_peak not_DNA
128 1406
DNA_peak not_DNA
9040 117751
Comparing row 4 with last row:
DNA_peak not_DNA
854 11913
DNA_peak not_DNA
9040 117751
Comparing row 5 with last row:
DNA_peak not_DNA
8 130
DNA_peak not_DNA
9040 117751
Comparing row 6 with last row:
DNA_peak not_DNA
546 7299
DNA_peak not_DNA
9040 117751
Comparing row 7 with last row:
DNA_peak not_DNA
1522 18242
DNA_peak not_DNA
9040 117751
Comparing row 8 with last row:
DNA_peak not_DNA
3809 38968
DNA_peak not_DNA
9040 117751
Processing Matrix: Retro
Retro_peak not_Retro
EAR_close 7 5921
EAR_open 22 4818
ESR_clop 2 1532
ESR_close 11 12756
ESR_open 41 7804
LR_close 18 19746
LR_open 38 42739
NR 148 126643
Comparing row 1 with last row:
Retro_peak not_Retro
7 5921
Retro_peak not_Retro
148 126643
Comparing row 2 with last row:
Retro_peak not_Retro
22 4818
Retro_peak not_Retro
148 126643
Comparing row 3 with last row:
Retro_peak not_Retro
2 1532
Retro_peak not_Retro
148 126643 Comparing row 4 with last row:
Retro_peak not_Retro
11 12756
Retro_peak not_Retro
148 126643
Comparing row 5 with last row:
Retro_peak not_Retro
41 7804
Retro_peak not_Retro
148 126643
Comparing row 6 with last row:
Retro_peak not_Retro
18 19746
Retro_peak not_Retro
148 126643
Comparing row 7 with last row:
Retro_peak not_Retro
38 42739
Retro_peak not_Retro
148 126643
Processing Matrix: LTR
LTR_peak not_LTR
EAR_close 787 5141
EAR_open 427 4413
ESR_clop 225 1309
ESR_close 1508 11259
ESR_opcl 20 118
ESR_open 776 7069
LR_close 2684 17080
LR_open 6116 36661
NR 14757 112034
Comparing row 1 with last row:
LTR_peak not_LTR
787 5141
LTR_peak not_LTR
14757 112034
Comparing row 2 with last row:
LTR_peak not_LTR
427 4413
LTR_peak not_LTR
14757 112034
Comparing row 3 with last row:
LTR_peak not_LTR
225 1309
LTR_peak not_LTR
14757 112034
Comparing row 4 with last row:
LTR_peak not_LTR
1508 11259
LTR_peak not_LTR
14757 112034
Comparing row 5 with last row:
LTR_peak not_LTR
20 118
LTR_peak not_LTR
14757 112034
Comparing row 6 with last row:
LTR_peak not_LTR
776 7069
LTR_peak not_LTR
14757 112034
Comparing row 7 with last row:
LTR_peak not_LTR
2684 17080
LTR_peak not_LTR
14757 112034
Comparing row 8 with last row:
LTR_peak not_LTR
6116 36661
LTR_peak not_LTR
14757 112034
Processing Matrix: CGI
CGi_peak not_CGi_peak
EAR_open 81 3077
EAR_close 17 4279
ESR_open 139 5133
ESR_close 71 9278
LR_open 307 28230
LR_close 102 13970
NR 1265 85063
Comparing row 1 with last row:
CGi_peak not_CGi_peak
81 3077
CGi_peak not_CGi_peak
1265 85063
Comparing row 2 with last row:
CGi_peak not_CGi_peak
17 4279
CGi_peak not_CGi_peak
1265 85063
Comparing row 3 with last row:
CGi_peak not_CGi_peak
139 5133
CGi_peak not_CGi_peak
1265 85063
Comparing row 4 with last row:
CGi_peak not_CGi_peak
71 9278
CGi_peak not_CGi_peak
1265 85063
Comparing row 5 with last row:
CGi_peak not_CGi_peak
307 28230
CGi_peak not_CGi_peak
1265 85063
Comparing row 6 with last row:
CGi_peak not_CGi_peak
102 13970
CGi_peak not_CGi_peak
1265 85063
Processing Matrix: TSS
TSS_peak not_TSS_peak
EAR_close 148 4148
EAR_open 429 2729
ESR_close 417 8932
ESR_opcl 2 97
ESR_open 198 5074
LR_close 799 13273
LR_open 1098 27439
NR 7610 78718
Comparing row 1 with last row:
TSS_peak not_TSS_peak
148 4148
TSS_peak not_TSS_peak
7610 78718
Comparing row 2 with last row:
TSS_peak not_TSS_peak
429 2729
TSS_peak not_TSS_peak
7610 78718
Comparing row 3 with last row:
TSS_peak not_TSS_peak
417 8932
TSS_peak not_TSS_peak
7610 78718
Comparing row 4 with last row:
TSS_peak not_TSS_peak
2 97
TSS_peak not_TSS_peak
7610 78718
Comparing row 5 with last row:
TSS_peak not_TSS_peak
198 5074
TSS_peak not_TSS_peak
7610 78718
Comparing row 6 with last row:
TSS_peak not_TSS_peak
799 13273
TSS_peak not_TSS_peak
7610 78718
Comparing row 7 with last row:
TSS_peak not_TSS_peak
1098 27439
TSS_peak not_TSS_peak
7610 78718 # Print the resulting dataframe
print(results) Matrix_Name Row_Compared Chi_Square_Statistic P_Value
X-squared TE EAR_close 6.903104e+01 9.692579e-17
X-squared1 TE EAR_open 1.894559e+01 1.345000e-05
X-squared2 TE ESR_clop 8.002126e+00 4.672245e-03
X-squared3 TE ESR_close 1.910265e+02 1.897880e-43
X-squared4 TE ESR_opcl 1.184281e-03 9.725475e-01
X-squared5 TE ESR_open 2.115029e+01 4.246360e-06
X-squared6 TE LR_close 8.796183e+01 6.672979e-21
X-squared7 TE LR_open 1.569567e+01 7.439430e-05
X-squared8 Sines EAR_close 4.073898e+01 1.739814e-10
X-squared9 Sines EAR_open 8.385977e+00 3.781268e-03
X-squared10 Sines ESR_clop 4.644582e+01 9.418709e-12
X-squared11 Sines ESR_close 7.576128e+00 5.914635e-03
X-squared12 Sines ESR_opcl 1.273197e-02 9.101606e-01
X-squared13 Sines ESR_open 9.657475e-02 7.559794e-01
X-squared14 Sines LR_close 1.607202e+00 2.048856e-01
X-squared15 Sines LR_open 1.832910e+02 9.265952e-42
X-squared16 Lines EAR_close 1.095372e+01 9.341575e-04
X-squared17 Lines EAR_open 8.705754e+00 3.172072e-03
X-squared18 Lines ESR_clop 4.207890e+00 4.023635e-02
X-squared19 Lines ESR_close 2.866069e+00 9.046560e-02
X-squared20 Lines ESR_opcl 5.342899e+00 2.080684e-02
X-squared21 Lines ESR_open 5.048981e+00 2.464042e-02
X-squared22 Lines LR_close 5.872044e+01 1.817440e-14
X-squared23 Lines LR_open 2.157756e+02 7.548848e-49
X-squared24 DNA EAR_close 4.868862e-01 4.853196e-01
X-squared25 DNA EAR_open 5.729269e+00 1.668443e-02
X-squared26 DNA ESR_clop 3.188597e+00 7.415364e-02
X-squared27 DNA ESR_close 3.353784e+00 6.705071e-02
X-squared28 DNA ESR_opcl 1.959302e-01 6.580261e-01
X-squared29 DNA ESR_open 2.976560e-01 5.853556e-01
X-squared30 DNA LR_close 8.251911e+00 4.070912e-03
X-squared31 DNA LR_open 1.435574e+02 4.439819e-33
X-squared32 Retro EAR_close 2.269176e-24 1.000000e+00
X-squared33 Retro EAR_open 3.867129e+01 5.015332e-10
X-squared34 Retro ESR_clop 5.740842e-29 1.000000e+00
X-squared35 Retro ESR_close 7.027035e-01 4.018768e-01
X-squared36 Retro ESR_open 8.395750e+01 5.055255e-20
X-squared37 Retro LR_close 7.807185e-01 3.769215e-01
X-squared38 Retro LR_open 2.024021e+00 1.548287e-01
X-squared39 LTR EAR_close 1.452134e+01 1.385811e-04
X-squared40 LTR EAR_open 3.596589e+01 2.008021e-09
X-squared41 LTR ESR_clop 1.319045e+01 2.813794e-04
X-squared42 LTR ESR_close 3.200447e-01 5.715808e-01
X-squared43 LTR ESR_opcl 8.316735e-01 3.617891e-01
X-squared44 LTR ESR_open 2.192667e+01 2.832692e-06
X-squared45 LTR LR_close 6.128351e+01 4.942022e-15
X-squared46 LTR LR_open 2.091919e+02 2.061473e-47
X-squared47 CGI EAR_open 2.412608e+01 9.022978e-07
X-squared48 CGI EAR_close 3.280949e+01 1.016472e-08
X-squared49 CGI ESR_open 4.438709e+01 2.694584e-11
X-squared50 CGI ESR_close 3.001802e+01 4.280499e-08
X-squared51 CGI LR_open 2.382286e+01 1.056207e-06
X-squared52 CGI LR_close 4.885169e+01 2.760671e-12
X-squared53 TSS EAR_close 1.500817e+02 1.663835e-34
X-squared54 TSS EAR_open 8.417102e+01 4.537745e-20
X-squared55 TSS ESR_close 2.075782e+02 4.637019e-47
X-squared56 TSS ESR_opcl 4.870180e+00 2.732466e-02
X-squared57 TSS ESR_open 1.624690e+02 3.267569e-37
X-squared58 TSS LR_close 1.547789e+02 1.565006e-35
X-squared59 TSS LR_open 7.546797e+02 3.853646e-166results_or <- data.frame(Matrix_Name = character(),
Row_Compared = character(),
Odds_Ratio = numeric(),
Lower_CI = numeric(),
Upper_CI = numeric(),
P_Value = numeric(),
stringsAsFactors = FALSE)
# Loop through each matrix in the list
for (matrix_name in names(matrix_list)) {
current_matrix <- matrix_list[[matrix_name]]
n_rows <- nrow(current_matrix)
# Loop through each row of the current matrix (except the last row)
for (i in 1:(n_rows - 1)) {
# Perform odds ratio test between row i and the last row using epitools
test_result <- tryCatch({
contingency_table <- rbind(current_matrix[i, ], current_matrix[n_rows, ])
# Check if any row in the contingency table contains only zeros
if (any(rowSums(contingency_table) == 0)) {
stop("Contingency table contains empty rows.")
}
oddsratio_result <- oddsratio(contingency_table)
# Ensure the oddsratio result has at least 2 rows
if (nrow(oddsratio_result$measure) < 2) {
stop("oddsratio result does not have enough data.")
}
list(oddsratio = oddsratio_result, p.value = oddsratio_result$p.value[2,"chi.square"])
}, error = function(e) {
cat("Error in odds ratio test for row", i, "in matrix", matrix_name, ":", e$message, "\n")
return(NULL)
})
# Only store the result if test_result is valid (i.e., not NULL)
if (!is.null(test_result)) {
or_value <- test_result$oddsratio$measure[2, "estimate"]
lower_ci <- test_result$oddsratio$measure[2, "lower"]
upper_ci <- test_result$oddsratio$measure[2, "upper"]
p_value <- test_result$oddsratio$p.value[2,"chi.square"]
# Check if the values are numeric and valid (not NA)
if (!is.na(or_value) && !is.na(lower_ci) && !is.na(upper_ci) && !is.na(p_value)) {
# Store the results in the dataframe
results_or <- rbind(results_or, data.frame(Matrix_Name = matrix_name,
Row_Compared = rownames(current_matrix)[i],
Odds_Ratio = or_value,
Lower_CI = lower_ci,
Upper_CI = upper_ci,
P_Value = p_value))
}
}
}
}
# Print the resulting dataframe
print(results_or) Matrix_Name Row_Compared Odds_Ratio Lower_CI Upper_CI
estimate TE EAR_close 0.8018315 0.7611353 0.8447307
estimate1 TE EAR_open 1.1380799 1.0739352 1.2062621
estimate2 TE ESR_clop 0.8637015 0.7809329 0.9552490
estimate3 TE ESR_close 0.7737171 0.7460215 0.8024291
estimate4 TE ESR_opcl 1.0202442 0.7297622 1.4318500
estimate5 TE ESR_open 1.1144381 1.0642473 1.1670127
estimate6 TE LR_close 0.8662558 0.8406570 0.8926037
estimate7 TE LR_open 1.0456610 1.0228421 1.0689499
estimate8 Sines EAR_close 1.2140218 1.1436499 1.2880365
estimate9 Sines EAR_open 0.9003151 0.8384455 0.9659169
estimate10 Sines ESR_clop 1.4661622 1.3121527 1.6356040
estimate11 Sines ESR_close 1.0624427 1.0176585 1.1088832
estimate12 Sines ESR_opcl 0.9604240 0.6293681 1.4206259
estimate13 Sines ESR_open 0.9910389 0.9380274 1.0465405
estimate14 Sines LR_close 0.9767914 0.9420791 1.0125838
estimate15 Sines LR_open 1.1915424 1.1616378 1.2221370
estimate16 Lines EAR_close 1.1207354 1.0475169 1.1980391
estimate17 Lines EAR_open 0.8864872 0.8180134 0.9593484
estimate18 Lines ESR_clop 1.1470621 1.0068554 1.3024806
estimate19 Lines ESR_close 1.0426688 0.9936261 1.0936497
estimate20 Lines ESR_opcl 1.6132125 1.0788300 2.3514816
estimate21 Lines ESR_open 1.0713070 1.0089789 1.1366501
estimate22 Lines LR_close 1.1620391 1.1181608 1.2074006
estimate23 Lines LR_open 1.2320451 1.1981776 1.2668316
estimate24 DNA EAR_close 0.9631076 0.8677809 1.0659409
estimate25 DNA EAR_open 0.8642179 0.7660552 0.9712230
estimate26 DNA ESR_clop 1.1872063 0.9848197 1.4183896
estimate27 DNA ESR_close 0.9339086 0.8679018 1.0036802
estimate28 DNA ESR_opcl 0.8169463 0.3652356 1.5628711
estimate29 DNA ESR_open 0.9746323 0.8902416 1.0648643
estimate30 DNA LR_close 1.0868636 1.0268235 1.1496416
estimate31 DNA LR_open 1.2732597 1.2237553 1.3244921
estimate32 Retro EAR_close 1.0340804 0.4355106 2.0463892
estimate33 Retro EAR_open 3.9321127 2.4405460 6.0252674
estimate34 Retro ESR_clop 1.2027275 0.1855626 3.7511651
estimate35 Retro ESR_close 0.7481210 0.3804652 1.3164846
estimate36 Retro ESR_open 4.5085891 3.1471538 6.3127730
estimate37 Retro LR_close 0.7863199 0.4649896 1.2476868
estimate38 Retro LR_open 0.7633061 0.5267756 1.0783561
estimate39 LTR EAR_close 1.1623912 1.0755693 1.2545921
estimate40 LTR EAR_open 0.7348741 0.6634605 0.8117356
estimate41 LTR ESR_clop 1.3057464 1.1295958 1.5022764
estimate42 LTR ESR_close 1.0169326 0.9608134 1.0756303
estimate43 LTR ESR_opcl 1.2955805 0.7818817 2.0337293
estimate44 LTR ESR_open 0.8335422 0.7719410 0.8988335
estimate45 LTR LR_close 1.1930868 1.1413249 1.2467341
estimate46 LTR LR_open 1.2665403 1.2265514 1.3077553
estimate47 CGI EAR_open 1.7734414 1.4018570 2.2113095
estimate48 CGI EAR_close 0.2697156 0.1602209 0.4210667
estimate49 CGI ESR_open 1.8228090 1.5201218 2.1684240
estimate50 CGI ESR_close 0.5156835 0.4020549 0.6503579
estimate51 CGI LR_open 0.7315696 0.6442733 0.8280861
estimate52 CGI LR_close 0.4917024 0.3991197 0.5988032
estimate53 TSS EAR_close 0.3694960 0.3117434 0.4343084
estimate54 TSS EAR_open 1.6265744 1.4634153 1.8036286
estimate55 TSS ESR_close 0.4831114 0.4360727 0.5337066
estimate56 TSS ESR_opcl 0.2295193 0.0353005 0.7209507
estimate57 TSS ESR_open 0.4039695 0.3487304 0.4651334
estimate58 TSS LR_close 0.6228241 0.5773269 0.6709731
estimate59 TSS LR_open 0.4140065 0.3878280 0.4414668
P_Value
estimate 8.661531e-17
estimate1 1.257554e-05
estimate2 4.309177e-03
estimate3 1.667436e-43
estimate4 9.045287e-01
estimate5 4.014478e-06
estimate6 6.204485e-21
estimate7 7.266284e-05
estimate8 1.568282e-10
estimate9 3.575062e-03
estimate10 7.603440e-12
estimate11 5.717164e-03
estimate12 8.299120e-01
estimate13 7.454107e-01
estimate14 2.016309e-01
estimate15 8.468238e-42
estimate16 8.767903e-04
estimate17 2.976821e-03
estimate18 3.701771e-02
estimate19 8.813468e-02
estimate20 1.530432e-02
estimate21 2.366672e-02
estimate22 1.679414e-14
estimate23 6.775038e-49
estimate24 4.693046e-01
estimate25 1.543072e-02
estimate26 6.642753e-02
estimate27 6.439674e-02
estimate28 5.430867e-01
estimate29 5.698995e-01
estimate30 3.884398e-03
estimate31 3.908336e-33
estimate32 9.761622e-01
estimate33 1.340329e-10
estimate34 8.764030e-01
estimate35 3.291164e-01
estimate36 1.183286e-20
estimate37 3.186374e-01
estimate38 1.317748e-01
estimate39 1.274425e-04
estimate40 1.743304e-09
estimate41 2.407915e-04
estimate42 5.617843e-01
estimate43 2.961428e-01
estimate44 2.591425e-06
estimate45 4.498738e-15
estimate46 1.821622e-47
estimate47 6.156094e-07
estimate48 6.867152e-09
estimate49 1.815962e-11
estimate50 3.289884e-08
estimate51 9.095905e-07
estimate52 2.085836e-12
estimate53 1.178508e-34
estimate54 3.380127e-20
estimate55 3.488987e-47
estimate56 1.711323e-02
estimate57 2.358360e-37
estimate58 1.274194e-35
estimate59 2.702370e-166library(circlize)
col_fun_OR = colorRamp2(c(0,6), c("white", "purple3"))
sig_mat_OR <- results_or %>%
as.data.frame() %>%
dplyr::select( Matrix_Name,Row_Compared,P_Value) %>%
pivot_wider(., id_cols = Matrix_Name, names_from = Row_Compared, values_from = P_Value) %>%
column_to_rownames("Matrix_Name") %>%
as.matrix()
results_or %>%
as.data.frame() %>%
dplyr::select( Matrix_Name,Row_Compared,Odds_Ratio) %>%
pivot_wider(., id_cols = Matrix_Name, names_from = Row_Compared, values_from = Odds_Ratio) %>%
column_to_rownames("Matrix_Name") %>%
as.matrix() %>%
ComplexHeatmap::Heatmap(. ,col = col_fun_OR,
cluster_rows=FALSE,
cluster_columns=FALSE,
column_names_side = "top",
column_names_rot = 45,
cell_fun = function(j, i, x, y, width, height, fill) {if (!is.na(sig_mat_OR[i, j]) && sig_mat_OR[i, j] < 0.05)
grid.text("*", x, y, gp = gpar(fontsize = 20))})
sessionInfo()R version 4.4.1 (2024-06-14 ucrt)
Platform: x86_64-w64-mingw32/x64
Running under: Windows 10 x64 (build 19045)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.utf8
[2] LC_CTYPE=English_United States.utf8
[3] LC_MONETARY=English_United States.utf8
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.utf8
time zone: America/Chicago
tzcode source: internal
attached base packages:
[1] grid stats4 stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] circlize_0.4.16
[2] epitools_0.5-10.1
[3] ggrepel_0.9.6
[4] plyranges_1.24.0
[5] ggsignif_0.6.4
[6] genomation_1.36.0
[7] smplot2_0.2.4
[8] eulerr_7.0.2
[9] biomaRt_2.60.1
[10] devtools_2.4.5
[11] usethis_3.0.0
[12] ggpubr_0.6.0
[13] BiocParallel_1.38.0
[14] scales_1.3.0
[15] VennDiagram_1.7.3
[16] futile.logger_1.4.3
[17] gridExtra_2.3
[18] ggfortify_0.4.17
[19] edgeR_4.2.1
[20] limma_3.60.4
[21] rtracklayer_1.64.0
[22] org.Hs.eg.db_3.19.1
[23] TxDb.Hsapiens.UCSC.hg38.knownGene_3.18.0
[24] GenomicFeatures_1.56.0
[25] AnnotationDbi_1.66.0
[26] Biobase_2.64.0
[27] GenomicRanges_1.56.1
[28] GenomeInfoDb_1.40.1
[29] IRanges_2.38.1
[30] S4Vectors_0.42.1
[31] BiocGenerics_0.50.0
[32] ChIPseeker_1.40.0
[33] RColorBrewer_1.1-3
[34] broom_1.0.7
[35] kableExtra_1.4.0
[36] lubridate_1.9.3
[37] forcats_1.0.0
[38] stringr_1.5.1
[39] dplyr_1.1.4
[40] purrr_1.0.2
[41] readr_2.1.5
[42] tidyr_1.3.1
[43] tibble_3.2.1
[44] ggplot2_3.5.1
[45] tidyverse_2.0.0
[46] workflowr_1.7.1
loaded via a namespace (and not attached):
[1] R.methodsS3_1.8.2
[2] vroom_1.6.5
[3] progress_1.2.3
[4] urlchecker_1.0.1
[5] nnet_7.3-19
[6] Biostrings_2.72.1
[7] vctrs_0.6.5
[8] digest_0.6.37
[9] png_0.1-8
[10] shape_1.4.6.1
[11] git2r_0.33.0
[12] magick_2.8.5
[13] MASS_7.3-61
[14] reshape2_1.4.4
[15] httpuv_1.6.15
[16] foreach_1.5.2
[17] qvalue_2.36.0
[18] withr_3.0.1
[19] xfun_0.47
[20] ggfun_0.1.6
[21] ellipsis_0.3.2
[22] memoise_2.0.1
[23] profvis_0.4.0
[24] systemfonts_1.1.0
[25] tidytree_0.4.6
[26] zoo_1.8-12
[27] GlobalOptions_0.1.2
[28] gtools_3.9.5
[29] R.oo_1.26.0
[30] Formula_1.2-5
[31] prettyunits_1.2.0
[32] KEGGREST_1.44.1
[33] promises_1.3.0
[34] httr_1.4.7
[35] rstatix_0.7.2
[36] restfulr_0.0.15
[37] ps_1.8.0
[38] rstudioapi_0.16.0
[39] UCSC.utils_1.0.0
[40] miniUI_0.1.1.1
[41] generics_0.1.3
[42] DOSE_3.30.5
[43] base64enc_0.1-3
[44] processx_3.8.4
[45] curl_5.2.3
[46] zlibbioc_1.50.0
[47] ggraph_2.2.1
[48] polyclip_1.10-7
[49] GenomeInfoDbData_1.2.12
[50] SparseArray_1.4.8
[51] xtable_1.8-4
[52] doParallel_1.0.17
[53] evaluate_1.0.0
[54] S4Arrays_1.4.1
[55] BiocFileCache_2.12.0
[56] hms_1.1.3
[57] colorspace_2.1-1
[58] filelock_1.0.3
[59] magrittr_2.0.3
[60] later_1.3.2
[61] viridis_0.6.5
[62] ggtree_3.12.0
[63] lattice_0.22-6
[64] getPass_0.2-4
[65] XML_3.99-0.17
[66] shadowtext_0.1.4
[67] cowplot_1.1.3
[68] matrixStats_1.4.1
[69] Hmisc_5.1-3
[70] pillar_1.9.0
[71] nlme_3.1-166
[72] iterators_1.0.14
[73] gridBase_0.4-7
[74] caTools_1.18.3
[75] compiler_4.4.1
[76] stringi_1.8.4
[77] SummarizedExperiment_1.34.0
[78] GenomicAlignments_1.40.0
[79] plyr_1.8.9
[80] crayon_1.5.3
[81] abind_1.4-8
[82] BiocIO_1.14.0
[83] gridGraphics_0.5-1
[84] locfit_1.5-9.10
[85] graphlayouts_1.2.0
[86] bit_4.5.0
[87] fastmatch_1.1-4
[88] whisker_0.4.1
[89] codetools_0.2-20
[90] bslib_0.8.0
[91] TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2
[92] GetoptLong_1.0.5
[93] mime_0.12
[94] splines_4.4.1
[95] Rcpp_1.0.13
[96] dbplyr_2.5.0
[97] knitr_1.48
[98] blob_1.2.4
[99] utf8_1.2.4
[100] clue_0.3-65
[101] fs_1.6.4
[102] checkmate_2.3.2
[103] pkgbuild_1.4.4
[104] ggplotify_0.1.2
[105] Matrix_1.7-0
[106] callr_3.7.6
[107] statmod_1.5.0
[108] tzdb_0.4.0
[109] svglite_2.1.3
[110] tweenr_2.0.3
[111] pkgconfig_2.0.3
[112] tools_4.4.1
[113] cachem_1.1.0
[114] RSQLite_2.3.7
[115] viridisLite_0.4.2
[116] DBI_1.2.3
[117] impute_1.78.0
[118] fastmap_1.2.0
[119] rmarkdown_2.28
[120] Rsamtools_2.20.0
[121] sass_0.4.9
[122] patchwork_1.3.0
[123] carData_3.0-5
[124] rpart_4.1.23
[125] farver_2.1.2
[126] tidygraph_1.3.1
[127] scatterpie_0.2.4
[128] yaml_2.3.10
[129] MatrixGenerics_1.16.0
[130] foreign_0.8-87
[131] cli_3.6.3
[132] lifecycle_1.0.4
[133] lambda.r_1.2.4
[134] sessioninfo_1.2.2
[135] backports_1.5.0
[136] timechange_0.3.0
[137] gtable_0.3.5
[138] rjson_0.2.23
[139] parallel_4.4.1
[140] ape_5.8
[141] jsonlite_1.8.9
[142] bitops_1.0-8
[143] bit64_4.5.2
[144] pwr_1.3-0
[145] yulab.utils_0.1.7
[146] futile.options_1.0.1
[147] jquerylib_0.1.4
[148] highr_0.11
[149] GOSemSim_2.30.2
[150] R.utils_2.12.3
[151] lazyeval_0.2.2
[152] shiny_1.9.1
[153] htmltools_0.5.8.1
[154] enrichplot_1.24.4
[155] GO.db_3.19.1
[156] rappdirs_0.3.3
[157] formatR_1.14
[158] glue_1.8.0
[159] httr2_1.0.5
[160] XVector_0.44.0
[161] RCurl_1.98-1.16
[162] rprojroot_2.0.4
[163] treeio_1.28.0
[164] BSgenome_1.72.0
[165] boot_1.3-31
[166] igraph_2.0.3
[167] R6_2.5.1
[168] gplots_3.1.3.1
[169] labeling_0.4.3
[170] cluster_2.1.6
[171] pkgload_1.4.0
[172] aplot_0.2.3
[173] DelayedArray_0.30.1
[174] tidyselect_1.2.1
[175] plotrix_3.8-4
[176] htmlTable_2.4.3
[177] ggforce_0.4.2
[178] xml2_1.3.6
[179] car_3.1-3
[180] seqPattern_1.36.0
[181] munsell_0.5.1
[182] KernSmooth_2.23-24
[183] data.table_1.16.0
[184] htmlwidgets_1.6.4
[185] fgsea_1.30.0
[186] ComplexHeatmap_2.20.0
[187] rlang_1.1.4
[188] remotes_2.5.0
[189] fansi_1.0.6