Last updated: 2019-03-19
workflowr checks: (Click a bullet for more information) ✔ R Markdown file: up-to-date
Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
✔ Repository version: 27f7115
wflow_publish
or wflow_git_commit
). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:
Ignored files:
Ignored: .Rhistory
Ignored: .Rproj.user/
Ignored: data/sst_ALL_clim_only.Rdata
Ignored: data/sst_ALL_event_aov_tukey.Rdata
Ignored: data/sst_ALL_flat.Rdata
Ignored: data/sst_ALL_miss.Rdata
Ignored: data/sst_ALL_miss_cat_chi.Rdata
Ignored: data/sst_ALL_miss_clim_event_cat.Rdata
Ignored: data/sst_ALL_miss_clim_only.Rdata
Ignored: data/sst_ALL_miss_event_aov_tukey.Rdata
Ignored: data/sst_ALL_repl.Rdata
Ignored: data/sst_ALL_smooth.Rdata
Ignored: data/sst_ALL_smooth_aov_tukey.Rdata
Ignored: data/sst_ALL_smooth_event.Rdata
Ignored: data/sst_ALL_trend.Rdata
Ignored: data/sst_ALL_trend_clim_event_cat.Rdata
Untracked files:
Untracked: analysis/bibliography.bib
Untracked: code/functions.R
Untracked: code/workflow.R
Untracked: data/.gitignore
Untracked: data/clim_py.csv
Untracked: data/clim_py_joinAG_1.csv
Untracked: data/clim_py_joinAG_5.csv
Untracked: data/clim_py_joinAG_no.csv
Untracked: data/clim_py_minD_3.csv
Untracked: data/clim_py_minD_7.csv
Untracked: data/clim_py_pctile_80.csv
Untracked: data/clim_py_pctile_95.csv
Untracked: data/clim_py_pctile_99.csv
Untracked: data/clim_py_random.csv
Untracked: data/clim_py_spw_11.csv
Untracked: data/clim_py_spw_51.csv
Untracked: data/clim_py_spw_no.csv
Untracked: data/clim_py_whw_3.csv
Untracked: data/clim_py_whw_7.csv
Untracked: data/mhwBlock.csv
Untracked: data/mhws_py.csv
Untracked: data/mhws_py_joinAG_1.csv
Untracked: data/mhws_py_joinAG_5.csv
Untracked: data/mhws_py_joinAG_no.csv
Untracked: data/mhws_py_minD_3.csv
Untracked: data/mhws_py_minD_7.csv
Untracked: data/mhws_py_pctile_80.csv
Untracked: data/mhws_py_pctile_95.csv
Untracked: data/mhws_py_pctile_99.csv
Untracked: data/mhws_py_random.csv
Untracked: data/mhws_py_spw_11.csv
Untracked: data/mhws_py_spw_51.csv
Untracked: data/mhws_py_spw_no.csv
Untracked: data/mhws_py_whw_3.csv
Untracked: data/mhws_py_whw_7.csv
Untracked: data/sst_ALL.Rdata
Untracked: data/sst_ALL_KS.Rdata
Untracked: data/sst_ALL_cat_chi.Rdata
Untracked: data/sst_ALL_clim_category_count.Rdata
Untracked: data/sst_ALL_con.Rdata
Untracked: data/sst_ALL_detrend.Rdata
Untracked: data/sst_ALL_event_cor.Rdata
Untracked: data/sst_ALL_miss_clim_KS_p.Rdata
Untracked: data/sst_ALL_miss_clim_aov_p.Rdata
Untracked: data/sst_ALL_miss_clim_aov_tukey.Rdata
Untracked: data/sst_ALL_miss_event_CI.Rdata
Untracked: data/sst_ALL_smooth_R2.Rdata
Untracked: data/sst_ALL_smooth_R2_base.Rdata
Untracked: data/sst_ALL_smooth_cor_base.Rdata
Untracked: data/sst_ALL_smooth_real_category.Rdata
Untracked: data/sst_ALL_trend_cat_chi.Rdata
Untracked: data/sst_ALL_trend_clim_KS_p.Rdata
Untracked: data/sst_ALL_trend_clim_aov_tukey.Rdata
Untracked: data/sst_ALL_trend_clim_only.Rdata
Untracked: data/sst_ALL_trend_event_CI.Rdata
Untracked: data/sst_ALL_trend_event_aov_tukey.Rdata
Untracked: data/sst_WA.csv
Untracked: data/sst_WA_miss_ice.csv
Untracked: data/sst_WA_miss_random.csv
Unstaged changes:
Deleted: .Rbuildignore
Modified: .gitignore
Deleted: DESCRIPTION
Deleted: NAMESPACE
Modified: NEWS.md
Deleted: R/MHWdetection-package.R
Deleted: R/placeholder.R
Modified: README.md
Deleted: _pkgdown.yml
Modified: _workflowr.yml
Modified: analysis/_site.yml
Modified: analysis/best_practices.Rmd
Modified: analysis/missing_data.Rmd
Modified: analysis/r_vs_python.Rmd
Modified: analysis/r_vs_python_arguments.Rmd
Modified: analysis/time_series_duration.Rmd
Modified: analysis/trend.Rmd
Deleted: docs/articles/fig/heatwaveR_v3.svg
Deleted: docs/docsearch.css
Deleted: docs/docsearch.js
Deleted: docs/link.svg
Deleted: docs/pkgdown.css
Deleted: docs/pkgdown.js
Deleted: docs/pkgdown.yml
Deleted: docs/sitemap.xml
Deleted: man/MHWdetection-package.Rd
Deleted: man/placeholder.Rd
Deleted: tests/testthat.R
Deleted: tests/testthat/test-placeholder.R
Deleted: vignettes/.gitignore
Deleted: vignettes/Climatologies_and_baselines.Rmd
Deleted: vignettes/Short_climatologies.Rmd
Deleted: vignettes/best_practices.Rmd
Deleted: vignettes/bibliography.bib
Deleted: vignettes/data/.gitignore
Deleted: vignettes/data/clim_py.csv
Deleted: vignettes/data/clim_py_joinAG_1.csv
Deleted: vignettes/data/clim_py_joinAG_5.csv
Deleted: vignettes/data/clim_py_joinAG_no.csv
Deleted: vignettes/data/clim_py_minD_3.csv
Deleted: vignettes/data/clim_py_minD_7.csv
Deleted: vignettes/data/clim_py_pctile_80.csv
Deleted: vignettes/data/clim_py_pctile_95.csv
Deleted: vignettes/data/clim_py_pctile_99.csv
Deleted: vignettes/data/clim_py_random.csv
Deleted: vignettes/data/clim_py_spw_11.csv
Deleted: vignettes/data/clim_py_spw_51.csv
Deleted: vignettes/data/clim_py_spw_no.csv
Deleted: vignettes/data/clim_py_whw_3.csv
Deleted: vignettes/data/clim_py_whw_7.csv
Deleted: vignettes/data/mhwBlock.csv
Deleted: vignettes/data/mhws_py.csv
Deleted: vignettes/data/mhws_py_joinAG_1.csv
Deleted: vignettes/data/mhws_py_joinAG_5.csv
Deleted: vignettes/data/mhws_py_joinAG_no.csv
Deleted: vignettes/data/mhws_py_minD_3.csv
Deleted: vignettes/data/mhws_py_minD_7.csv
Deleted: vignettes/data/mhws_py_pctile_80.csv
Deleted: vignettes/data/mhws_py_pctile_95.csv
Deleted: vignettes/data/mhws_py_pctile_99.csv
Deleted: vignettes/data/mhws_py_random.csv
Deleted: vignettes/data/mhws_py_spw_11.csv
Deleted: vignettes/data/mhws_py_spw_51.csv
Deleted: vignettes/data/mhws_py_spw_no.csv
Deleted: vignettes/data/mhws_py_whw_3.csv
Deleted: vignettes/data/mhws_py_whw_7.csv
Deleted: vignettes/data/sst_ALL.Rdata
Deleted: vignettes/data/sst_ALL_KS.Rdata
Deleted: vignettes/data/sst_ALL_cat_chi.Rdata
Deleted: vignettes/data/sst_ALL_clim_category_count.Rdata
Deleted: vignettes/data/sst_ALL_con.Rdata
Deleted: vignettes/data/sst_ALL_detrend.Rdata
Deleted: vignettes/data/sst_ALL_event_cor.Rdata
Deleted: vignettes/data/sst_ALL_miss_clim_KS_p.Rdata
Deleted: vignettes/data/sst_ALL_miss_clim_aov_p.Rdata
Deleted: vignettes/data/sst_ALL_miss_clim_aov_tukey.Rdata
Deleted: vignettes/data/sst_ALL_miss_event_CI.Rdata
Deleted: vignettes/data/sst_ALL_miss_event_aov_tukey.Rdata
Deleted: vignettes/data/sst_ALL_smooth_R2.Rdata
Deleted: vignettes/data/sst_ALL_smooth_R2_base.Rdata
Deleted: vignettes/data/sst_ALL_smooth_cor_base.Rdata
Deleted: vignettes/data/sst_ALL_smooth_real_category.Rdata
Deleted: vignettes/data/sst_ALL_trend_cat_chi.Rdata
Deleted: vignettes/data/sst_ALL_trend_clim_KS_p.Rdata
Deleted: vignettes/data/sst_ALL_trend_clim_aov_tukey.Rdata
Deleted: vignettes/data/sst_ALL_trend_clim_only.Rdata
Deleted: vignettes/data/sst_ALL_trend_event_CI.Rdata
Deleted: vignettes/data/sst_ALL_trend_event_aov_tukey.Rdata
Deleted: vignettes/data/sst_WA.csv
Deleted: vignettes/data/sst_WA_miss_ice.csv
Deleted: vignettes/data/sst_WA_miss_random.csv
Deleted: vignettes/fig/detect_diagram.svg
Deleted: vignettes/fig/heatwaveR_v3.svg
Deleted: vignettes/gridded_products.Rmd
Deleted: vignettes/missing_data.Rmd
Deleted: vignettes/r_vs_python.Rmd
Deleted: vignettes/r_vs_python_additional.Rmd
Deleted: vignettes/r_vs_python_arguments.Rmd
Deleted: vignettes/time_series_duration.Rmd
Deleted: vignettes/trend.Rmd
Deleted: vignettes/variance.Rmd
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
This site contains all of the code used in the ‘Detecting marine heatwaves from imperfect data’ paper.
It is set up using the package workflowr
to ensure openness and reproducibility standards.
This reproducible R Markdown analysis was created with workflowr 1.1.1