Last updated: 2020-12-21

Checks: 2 0

Knit directory: MHWflux/

This reproducible R Markdown analysis was created with workflowr (version 1.6.2). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 949244e

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 949244e. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    data/ALL_anom.Rda
    Ignored:    data/ALL_other.Rda
    Ignored:    data/ALL_ts_anom.Rda
    Ignored:    data/ERA5_down.Rda
    Ignored:    data/ERA5_down_anom.Rda
    Ignored:    data/ERA5_evp_anom.Rda
    Ignored:    data/ERA5_lhf_anom.Rda
    Ignored:    data/ERA5_lwr_anom.Rda
    Ignored:    data/ERA5_mslp_anom.Rda
    Ignored:    data/ERA5_pcp_anom.Rda
    Ignored:    data/ERA5_qnet_anom.Rda
    Ignored:    data/ERA5_shf_anom.Rda
    Ignored:    data/ERA5_swr_MLD.Rda
    Ignored:    data/ERA5_swr_anom.Rda
    Ignored:    data/ERA5_t2m_anom.Rda
    Ignored:    data/ERA5_tcc_anom.Rda
    Ignored:    data/ERA5_u_anom.Rda
    Ignored:    data/ERA5_v_anom.Rda
    Ignored:    data/GLORYS_all_anom.Rda
    Ignored:    data/OISST_all_anom.Rda
    Ignored:    data/packet.Rda
    Ignored:    data/som.Rda
    Ignored:    data/synoptic_states.Rda
    Ignored:    data/synoptic_states_other.Rda

Unstaged changes:
    Modified:   code/functions.R
    Modified:   data/ALL_cor.Rda
    Modified:   data/ALL_ts_anom_cum.Rda
    Modified:   shiny/ALL_cor.Rda
    Modified:   shiny/ALL_ts_anom_cum.Rda
    Modified:   shiny/app.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html 4a00400 robwschlegel 2020-12-21 Build site.
html 65f38bf robwschlegel 2020-12-21 Build site.
html 33f4595 robwschlegel 2020-11-10 Build site.
html a438235 robwschlegel 2020-11-10 Build site.
Rmd cbc5b74 robwschlegel 2020-11-10 Re-built site.
html 8d65758 robwschlegel 2020-09-03 Build site.
Rmd c0c599d robwschlegel 2020-08-12 Combining the MHWNWA and MHWflux code bases
html 9304ba0 robwschlegel 2020-07-21 Build site.
html cf24288 robwschlegel 2020-07-17 Build site.
html ab06b94 robwschlegel 2020-07-14 Build site.
html 7574e34 robwschlegel 2020-06-03 Build site.
html 97d0296 robwschlegel 2020-06-02 Build site.
html 0634d98 robwschlegel 2020-06-02 Build site.
html c6087d9 robwschlegel 2020-06-02 Build site.
html 12b4f67 robwschlegel 2020-04-29 Build site.
html 7c04311 robwschlegel 2020-04-22 Build site.
html 99eda29 robwschlegel 2020-04-16 Build site.
html 8daad01 robwschlegel 2020-02-26 Build site.
html 50b94b2 robwschlegel 2020-02-26 Build site.
html 8054f38 robwschlegel 2020-02-26 Build site.
html 50eb5a5 robwschlegel 2020-02-26 Build site.
Rmd 80324fe robwschlegel 2020-02-25 Adding the foundational content to the site
Rmd e611398 robwschlegel 2020-01-17 First push
Rmd 27e74aa robwschlegel 2020-01-17 Start workflowr project.
Rmd 95663e5 robwschlegel 2020-01-17 Start workflowr project.

This website contains the version controlled analyses used to determine the relationship between air-sea heat flux and marine heatwaves (MHWs) in the Northwest Atlantic Ocean.

Please use the tabs above to navigate the site. The “Analyses” tabs contains discrete steps in the workflow. To see the raw code used for the workflow/pipeline of this project please follow the link in the top right of this page to the source code for this project. Once there the raw workflow code may be found in the code/workflow.R script. The functions etc. may be found in the code/functions.R script. The code used to create the figures and tables may be found in the code/figures.R script. Please note that not all of the objects used in these scripts are saved in the GitHub repo for this project as many of them are far too large. All necessary objects can be created by following the steps as laid out in the analyses.

An interactive shiny application that allows one to explore the results may be found here.