Last updated: 2022-11-09

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Knit directory: MUGA_reference_data/

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MUGA Genotype Data for Reference Samples and CC/DO Founder Strains

File Name Description Link
MUGA_sample_metadata.csv Metadata for samples passing QC from reference strains (sample name, sex, strain) [TBD]
MUGA_founder_metadata.csv Metadata for CC/DO founder strain samples passing QC (sample name, sex, strain, letter code) [TBD]
MUGA_genotypes.csv.gz Genotypes for markers passing QC from reference samples [TBD]
MUGA_x_intensities.csv.gz Probe x-channel intensities from markers passing QC from reference samples [TBD]
MUGA_y_intensities.csv.gz Probe y-channel intensities from markers passing QC from reference samples [TBD]
MUGA_founder_consensus_genotypes.csv.gz CC/DO founder strain consensus genotypes for markers passing QC [TBD]
MUGA_founder_mean_x_intensities.csv.gz CC/DO founder strain-averaged probe intensities (x-channel) for all markers passing QC [TBD]
MUGA_founder_mean_y_intensities.csv.gz CC/DO founder strain-averaged probe intensities (y-channel) for all markers passing QC [TBD]

MegaMUGA Genotype Data for Reference Samples and CC/DO Founder Strains

File Name Description Link
MegaMUGA_sample_metadata.csv Metadata for samples passing QC from reference strains (sample name, sex, strain) [TBD]
MegaMUGA_founder_metadata.csv Metadata for CC/DO founder strain samples passing QC (sample name, sex, strain, letter code) [TBD]
MegaMUGA_genotypes.csv.gz Genotypes for markers passing QC from reference samples [TBD]
MegaMUGA_x_intensities.csv.gz Probe x-channel intensities from markers passing QC from reference samples [TBD]
MegaMUGA_y_intensities.csv.gz Probe y-channel intensities from markers passing QC from reference samples [TBD]
MegaMUGA_founder_consensus_genotypes.csv.gz CC/DO founder strain consensus genotypes for markers passing QC [TBD]
MegaMUGA_founder_mean_x_intensities.csv.gz CC/DO founder strain-averaged probe intensities (x-channel) for all markers passing QC [TBD]
MegaMUGA_founder_mean_y_intensities.csv.gz CC/DO founder strain-averaged probe intensities (y-channel) for all markers passing QC [TBD]

GigaMUGA Genotype Data for Reference Samples and CC/DO Founder Strains

File Name Description Link
GigaMUGA_sample_metadata.csv Metadata for samples passing QC from reference strains (sample name, sex, strain) [TBD]
GigaMUGA_founder_metadata.csv Metadata for CC/DO founder strain samples passing QC (sample name, sex, strain, letter code) [TBD]
GigaMUGA_genotypes.csv.gz Genotypes for markers passing QC from reference samples [TBD]
GigaMUGA_x_intensities.csv.gz Probe x-channel intensities from markers passing QC from reference samples [TBD]
GigaMUGA_y_intensities.csv.gz Probe y-channel intensities from markers passing QC from reference samples [TBD]
GigaMUGA_founder_consensus_genotypes.csv.gz CC/DO founder strain consensus genotypes for markers passing QC [TBD]
GigaMUGA_founder_mean_x_intensities.csv.gz CC/DO founder strain-averaged probe intensities (x-channel) for all markers passing QC [TBD]
GigaMUGA_founder_mean_y_intensities.csv.gz CC/DO founder strain-averaged probe intensities (y-channel) for all markers passing QC [TBD]