Last updated: 2025-02-02

Checks: 2 0

Knit directory: CX5461_Project/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 95120ca. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .RData
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    Ignored:    .Rproj.user/

Untracked files:
    Untracked:  figure/

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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd 95120ca sayanpaul01 2025-02-02 Updated index with Correlation Heatmap of Samples
Rmd d9dc5a5 sayanpaul01 2025-02-02 Added GitHub source link to index
html d9dc5a5 sayanpaul01 2025-02-02 Added GitHub source link to index
html 9e7cdc9 sayanpaul01 2025-02-02 Build site.
Rmd 836b0e2 sayanpaul01 2025-02-02 Added PCA analysis link under QC Data in the index
html 6d0cf2c sayanpaul01 2025-01-31 Fixed X-axis label cutoff in boxplot and updated index
html ec5a1b0 sayanpaul01 2025-01-31 Build site.
html 9d99ced sayanpaul01 2025-01-31 Build site.
Rmd 6056476 sayanpaul01 2025-01-31 Updated index page for workflowr website
html 2b086e7 sayanpaul01 2025-01-30 Build site.
html 649747c sayanpaul01 2025-01-30 Build site.
html 909b59b sayanpaul01 2025-01-30 Build site.
html 5390837 sayanpaul01 2025-01-30 Build site.
Rmd 8ffe8a1 sayanpaul01 2025-01-30 Added Total Reads and Mapped Reads visualization
html 86b72f7 sayanpaul01 2025-01-30 Build site.
Rmd 7a9cb36 sayanpaul01 2025-01-30 Added Total Reads by Time under QC Data
html 8e7a4c1 sayanpaul01 2025-01-30 Build site.
Rmd 6ccc7a2 sayanpaul01 2025-01-30 Fixed link to Total Reads by Individual in QC Data
html 193cfe9 sayanpaul01 2025-01-30 Build site.
Rmd d24ffeb sayanpaul01 2025-01-30 Added Total Reads by Individual under QC Data
html e2f8bfe sayanpaul01 2025-01-30 Build site.
Rmd c3106bb sayanpaul01 2025-01-30 Rearranged Read Alignment Data links for better clarity
html 348a58c sayanpaul01 2025-01-30 Build site.
html 0afb954 sayanpaul01 2025-01-30 Build site.
Rmd a75f1d0 sayanpaul01 2025-01-30 Set index.html as default landing page
html 5909057 sayanpaul01 2025-01-29 Build site.
Rmd ba47cc8 sayanpaul01 2025-01-29 Updated homepage with Read alignment data link
html 3e72e52 sayanpaul01 2025-01-29 Added all missing docs files including total_reads_by_sample.html
html 2597a67 sayanpaul01 2025-01-29 Build site.
Rmd 088f417 sayanpaul01 2025-01-29 Updated homepage with read alignment data link
Rmd 3de5b6b sayanpaul01 2025-01-29 Start workflowr project.

Welcome to my research website.

QC Data

🔗 Source Code

View on GitHub