Last updated: 2021-07-01

Checks: 2 0

Knit directory: wildlife-bacteria/

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>>>>>>> 939f8bd0220b7c36ec94acff0d2dac574ce1dd5b

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<<<<<<< HEAD The results in this page were generated with repository version 76cd179. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files. ======= The results in this page were generated with repository version 3a8e4cd. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files. >>>>>>> 939f8bd0220b7c36ec94acff0d2dac574ce1dd5b

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Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.DS_Store
    Ignored:    data/.DS_Store
    Ignored:    data/dada2/.DS_Store
    Ignored:    data/dada2/phyloseq/.DS_Store
    Ignored:    output/.DS_Store
    Ignored:    output/plots/.DS_Store
    Ignored:    output/plots/QC/.DS_Store
    Ignored:    output/plots/boxplots_select_taxa/.DS_Store
    Ignored:    output/plots/heatmaps/.DS_Store
    Ignored:    output/plots/maps/.DS_Store
    Ignored:    output/plots/tax_prev_abund/.DS_Store

Untracked files:
    Untracked:  ENA_docs/
    Untracked:  NCBI_data/
    Untracked:  analysis/microbiome-viz-extra.Rmd
    Untracked:  analysis/tois.Rmd
    Untracked:  data/dada2/all_SILVAtaxonomy.qza
    Untracked:  data/dada2/all_SILVAtaxonomy.qzv
    Untracked:  data/dada2/all_SILVAtaxonomy.tsv
    Untracked:  data/dada2/all_SILVAtaxonomy.xlsx
    Untracked:  data/dada2/all_rep-seqs.fasta
    Untracked:  data/dada2/all_rep-seqs.qza
    Untracked:  data/dada2/all_rep-seqs.qzv
    Untracked:  data/dada2/all_table.qza
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    Untracked:  data/dada2/denosing-stats.xlsx
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    Untracked:  data/dada2/feature-table.tsv
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    Untracked:  data/dada2/metadata.tsv
    Untracked:  data/dada2/phyloseq/all_SILVAtaxonomy.xlsx
    Untracked:  data/dada2/phyloseq/all_rep-seqs.fasta
    Untracked:  data/dada2/phyloseq/metadata2.csv
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<<<<<<< HEAD
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Unstaged changes:
    Modified:   analysis/_site.yml
    Modified:   analysis/index.Rmd

>>>>>>> 939f8bd0220b7c36ec94acff0d2dac574ce1dd5b

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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/license.Rmd) and HTML (docs/license.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
html <<<<<<< HEAD 5f4c86d siobhon-egan 2021-05-23 restructure pages
html ======= >>>>>>> 939f8bd0220b7c36ec94acff0d2dac574ce1dd5b 0d602a3 siobhon-egan 2021-05-23 updates to pages
html 9ecc095 siobhon-egan 2021-04-24 Build site.
html a69dea3 siobhon-egan 2021-04-24 Build site.
Rmd 6ebcc5d siobhon-egan 2021-04-24 updates
html 6ebcc5d siobhon-egan 2021-04-24 updates
html 7aafdac siobhon-egan 2021-02-26 Build site.
Rmd 3f5c871 siobhon-egan 2021-02-26 first build
Rmd 681fc13 siobhon-egan 2021-01-29 Start workflowr project.

MIT License

Copyright (c) [2021] Siobhon L. Egan.

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.