Last updated: 2021-02-26
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Knit directory: wildlife-bacteria/
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| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | d502188 | siobhon-egan | 2021-02-26 | microbiome visualization |
| html | 7aafdac | siobhon-egan | 2021-02-26 | Build site. |
| Rmd | 0e683ca | siobhon-egan | 2021-02-26 | Publish the initial files for myproject |
| Rmd | 681fc13 | siobhon-egan | 2021-01-29 | Start workflowr project. |
Bacterial profiling of wildlife samples.
In the spirit of reproducibility this project website is created that outlines analysis done for the following publication:
Egan et al. Uncovering sylvatic cylces of bacteria in Australian wildlife.
PhD Thesis 2021 (Chapter three)
Raw Illumina MiSeq data is available at NCBI SRA project XXXXX
Nucleotide sequence data available on Genbank
Anaplasmataceae (long 16S rRNA) MW633160-MW633167
Borrelia 16S rRNA MW633074
Bartonella ITS MW633076-MW633082
ASVs for taxa of interest XXXXXX-XXXXXX
Data used but not directly produced for this manuscript.
Nucleotide data for identification of ticks MW665133-MW665150
To build/view webiste locally wflow_build() and wflow_view()
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Publish website pages wflow_publish(c("analysis/index.Rmd", "analysis/first-analysis.Rmd"), "Add my first analysis")
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